RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780457|ref|YP_003064870.1| cytidylate kinase [Candidatus
Liberibacter asiaticus str. psy62]
(217 letters)
>gnl|CDD|178800 PRK00023, cmk, cytidylate kinase; Provisional.
Length = 225
Score = 225 bits (576), Expect = 7e-60
Identities = 84/208 (40%), Positives = 133/208 (63%), Gaps = 15/208 (7%)
Query: 6 SQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIK 65
++I+IAIDG A +GKG +++ +A + GFHYLDTG +YRAVA L G+ L+DE+ +
Sbjct: 2 MKAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRAVALAALRHGVDLEDEEALVA 61
Query: 66 IAQNIVLSNLDKAQ--------------LSSNAIANVASQVASIDSVRDALIDIQRSFAQ 111
+A ++ +S + + + N AS+VA+I VR+AL++ QR+FA+
Sbjct: 62 LAAHLDISFESDPGGQRVFLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAR 121
Query: 112 NKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNR 171
G+++DGRDIGT++FPDA +K ++TAS + RA RRY E+ ++G VD+ +L +++ R
Sbjct: 122 EP-GLVMDGRDIGTVVFPDAELKIFLTASAEERAERRYKELQAKGISVDFEDLLAEIKER 180
Query: 172 DNQDRNRSYCPLVRDKDAYFFDTSEMDI 199
D +D NR+ PL +DA DTS + I
Sbjct: 181 DERDSNRAVAPLKPAEDALLLDTSGLSI 208
>gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 163 bits (415), Expect = 3e-41
Identities = 79/200 (39%), Positives = 118/200 (59%), Gaps = 11/200 (5%)
Query: 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIA-- 67
+I IDG A+GKG ++ +A G+HYLD+G +YR A L AG++LDDE +A
Sbjct: 444 VICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARG 503
Query: 68 -------QNIVLSNLDKAQ-LSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILD 119
I L D + + A AS+V+++ +VR AL+ +QRSF + G++ D
Sbjct: 504 LPVRFEGDRIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAALLALQRSFRRLP-GLVAD 562
Query: 120 GRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRS 179
GRD+GT+IFPDA +K ++TAS + RA RRY +++S+G + +L DL RD +D RS
Sbjct: 563 GRDMGTVIFPDAALKVFLTASAEARAERRYKQLISKGISANIADLLADLEARDARDTQRS 622
Query: 180 YCPLVRDKDAYFFDTSEMDI 199
PL +DA D S++ I
Sbjct: 623 VAPLKPAQDALLLDNSDLTI 642
>gnl|CDD|129128 TIGR00017, cmk, cytidylate kinase. This family consists of
cytidylate kinase, which catalyzes the phosphorylation
of cytidine 5-monophosphate (dCMP) to cytidine 5
-diphosphate (dCDP) in the presence of ATP or GTP. UMP
and dCMP can also act as acceptors.
Length = 217
Score = 160 bits (407), Expect = 2e-40
Identities = 73/211 (34%), Positives = 125/211 (59%), Gaps = 15/211 (7%)
Query: 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIA-- 67
IIAIDG + AGK +++ +A + G+ YLD+G +YRA+A L + L E ++
Sbjct: 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISH 63
Query: 68 -----------QNIVLSNLD-KAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLG 115
+ L+ D + + +AN AS+VA VR+AL+ Q++ A+N G
Sbjct: 64 LDIRFIPTNGEVEVFLNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQQALAKND-G 122
Query: 116 VILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQD 175
+I DGRDIGT++FP+A +K ++ AS++ RA+RRY ++ +G +V++ ++L +++ RD++D
Sbjct: 123 IIADGRDIGTVVFPNAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRD 182
Query: 176 RNRSYCPLVRDKDAYFFDTSEMDIGTMCKVA 206
NR PL + DA + DTS + I + +
Sbjct: 183 SNREVAPLKKADDALYLDTSNLSIDEVVEKI 213
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 145 bits (369), Expect = 7e-36
Identities = 77/213 (36%), Positives = 116/213 (54%), Gaps = 31/213 (14%)
Query: 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQN 69
IIAIDG A AGK ++R +A + G YLDTG +YRAV +L GI DE+ +A+
Sbjct: 286 IIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEE---ALAE- 341
Query: 70 IVLSNLDKAQLSSN----------------AI------ANVASQVASIDSVRDALIDIQR 107
+LS+L K +L + AI ++V S +A+ +VR AL+ Q+
Sbjct: 342 -LLSDL-KIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSV-SAIAAQPAVRQALVKQQQ 398
Query: 108 SFAQNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKV-DYVKILE 166
+ K G++ +GRDIGT +FPDA +K ++TAS++ RARRR ++ ++G V D ++
Sbjct: 399 RIGE-KGGLVAEGRDIGTHVFPDAELKIFLTASVEERARRRALDLQAQGFPVIDLEQLEA 457
Query: 167 DLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDI 199
+ RD D R PL + DA T + I
Sbjct: 458 QIAERDRLDSTREIAPLRKADDAIELITDGLSI 490
>gnl|CDD|181925 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der;
Reviewed.
Length = 712
Score = 127 bits (322), Expect = 1e-30
Identities = 69/239 (28%), Positives = 109/239 (45%), Gaps = 36/239 (15%)
Query: 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQ 68
II+AIDG A GK +SR +A G+ YLDTG +YRA A L GI LD E + ++
Sbjct: 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRACAWWCLKQGIDLDAELVDEQVVT 61
Query: 69 NIVL-----SNLD-----------------KAQLSSNAIANVASQVASIDSVRDALIDIQ 106
V + D ++ S +++ S VA+I VR+ LI Q
Sbjct: 62 EAVGEFFTGLHFDISVDPDSPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLIAAQ 121
Query: 107 RSFA---------QNKLGVILDGRDIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGE 157
R++ LG++ +GRDI T++ PDA ++ +TA ++R RR + S
Sbjct: 122 RAYIAREASADSFSGGLGIVAEGRDITTVVAPDAEVRILLTAREEVRQARRSGQDRS--- 178
Query: 158 KVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTSEMDIGTMCKVAKGLIDTKLDN 216
+LED+ RD D ++ L D S++D + GL++ ++
Sbjct: 179 -ETPGVVLEDVAARDEAD-SKVTSFLSAADGVTTLDNSDLDFDETLDLLIGLVEDAIEE 235
>gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal
protein S1; Provisional.
Length = 863
Score = 72.4 bits (177), Expect = 8e-14
Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 57/249 (22%)
Query: 8 SIIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNIL---------------- 51
++IIA+DG A +GK + R +A G L+TG YRA L
Sbjct: 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAFTLAALRRVSELAVQACSPSPD 93
Query: 52 -DAGI------------------------SLDDEKMAIKIAQNIVLS-----------NL 75
DA + +L DE + A+ + LS N+
Sbjct: 94 PDAAVGCAAVPHATNLDTSYAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENV 153
Query: 76 DKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFPDARIKF 135
+ + L S+ + + S A++ ++R + RS A V+ +GRD+ T++F DA +K
Sbjct: 154 E-SLLRSDEVESAVSYFAAMPAIRAIMTGKIRS-AVCGARVVCEGRDLTTVVFVDADLKC 211
Query: 136 YVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSYCPLVRDKDAYFFDTS 195
Y+ AS++ R RR+ + SR K + + + +R RD DR R+ L DA + DTS
Sbjct: 212 YLDASIEARVARRWAQGTSRLSKQE---LEQRMRARDAHDRARTVGGLRCAPDALYVDTS 268
Query: 196 EMDIGTMCK 204
+ I +C+
Sbjct: 269 CLTIEEVCE 277
>gnl|CDD|179771 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 54.4 bits (132), Expect = 2e-08
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 36/169 (21%)
Query: 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQN 69
II I G +GK ++R +A + G ++ G I+R +AK + G+SL
Sbjct: 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAK---ERGMSL------------ 46
Query: 70 IVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIFP 129
+ + A + ID D Q A+ + V+L+GR G +
Sbjct: 47 --------EEFNKYAEED-----PEIDKEIDRR---QLEIAEKEDNVVLEGRLAGWMAKD 90
Query: 130 DARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNR 178
A +K ++ A L++RA R ++ E + + LE+ R+ + R
Sbjct: 91 YADLKIWLKAPLEVRAER-----IAEREGISVEEALEETIEREESEAKR 134
>gnl|CDD|162744 TIGR02173, cyt_kin_arch, cytidylate kinase, putative. Proteins in
this family are believed to be cytidylate kinase.
Members of this family are found in the archaea and in
spirochaetes, and differ considerably from the common
bacterial form of cytidylate kinase described by
TIGR00017.
Length = 171
Score = 46.6 bits (111), Expect = 4e-06
Identities = 35/170 (20%), Positives = 65/170 (38%), Gaps = 36/170 (21%)
Query: 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQ 68
+II I G +GK +++ +A + + G I+R +A KM + + +
Sbjct: 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA------------AKMGLDLIE 48
Query: 69 NIVLSNLDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDGRDIGTIIF 128
N A + ID D A + V+L+ R G I+
Sbjct: 49 ----------------FLNYAEENPEIDKKIDRR---IHEIALKEKNVVLESRLAGWIVR 89
Query: 129 PDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDNQDRNR 178
A +K ++ A L++RARR +++ E + R+ ++ R
Sbjct: 90 EYADVKIWLKAPLEVRARR-----IAKREGKSLTVARSETIEREESEKRR 134
>gnl|CDD|179240 PRK01184, PRK01184, hypothetical protein; Provisional.
Length = 184
Score = 36.5 bits (85), Expect = 0.006
Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 41/172 (23%)
Query: 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAI----- 64
II + G +GKG S+ IA E G + G + R K G+ DE +
Sbjct: 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK---RGLEPTDENIGKVAIDL 58
Query: 65 --KIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVR-DALIDIQRSFAQNKLGVILDGR 121
++ + V A+ + I +V ID VR DA ++ R
Sbjct: 59 RKELGMDAV------AKRTVPKIREKGDEVVVIDGVRGDAEVEYFRKE------------ 100
Query: 122 DIGTIIFPDARIKFYVTASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDN 173
FP+ I + A ++R R + RG + D K E+L RD
Sbjct: 101 ------FPEDFILIAIHAPPEVRFER----LKKRG-RSDDPKSWEELEERDE 141
>gnl|CDD|162313 TIGR01351, adk, adenylate kinases. Adenylate kinase (EC 2.7.4.3)
converts ATP + AMP to ADP + ADP, that is, uses ATP as a
phosphate donor for AMP. Most members of this family are
known or believed to be adenylate kinase. However, some
members accept other nucleotide triphosphates as donors,
may be unable to use ATP, and may fail to complement
adenylate kinase mutants. An example of a
nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10)
is a GTP:AMP phosphotransferase. This family is
designated subfamily rather than equivalog for this
reason.
Length = 210
Score = 34.1 bits (79), Expect = 0.031
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 28/131 (21%)
Query: 15 GTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDDEKMAIKIAQNIVLSN 74
G +GKG ++ IA +YG ++ TG + RA K AG L K A+ +
Sbjct: 6 GPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIK----AGTPLG------KKAKEYM--- 52
Query: 75 LDKAQLSSNAIANVASQVASIDSVRDALIDIQRSFAQNKLGVILDG--RDIGTIIFPDAR 132
+K +L + I N V++ L Q N+ G ILDG R + DA
Sbjct: 53 -EKGELVPDEIVN--------QLVKERLTQNQ----DNENGFILDGFPRTLSQAEALDAL 99
Query: 133 IKFYVTASLDI 143
+K + A +++
Sbjct: 100 LKEKIDAVIEL 110
>gnl|CDD|181157 PRK07883, PRK07883, hypothetical protein; Validated.
Length = 557
Score = 29.9 bits (68), Expect = 0.55
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 131 ARIKFYVTASLDIRARRRYNEMVSRGEKVDYV 162
R++ Y TA+ R R EMV+ E+VD+V
Sbjct: 241 RRVRSYFTAA---ETRGRMREMVALAERVDHV 269
>gnl|CDD|178957 PRK00279, adk, adenylate kinase; Reviewed.
Length = 215
Score = 29.3 bits (67), Expect = 0.68
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 10/46 (21%)
Query: 19 AGKGVLSRFIALEYGFHYLDTGLIYRAV----------AKNILDAG 54
AGKG ++FIA +YG ++ TG + RA AK+ +DAG
Sbjct: 11 AGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAG 56
>gnl|CDD|184413 PRK13948, PRK13948, shikimate kinase; Provisional.
Length = 182
Score = 29.4 bits (66), Expect = 0.75
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 1 MGRLESQSIIIAIDGTAAAGKGVLSRFIALEYGFHYLDT-GLIYRAVAKNILD 52
+E +A+ G GK + ++ H++DT I R K+I +
Sbjct: 3 RLEIERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPE 55
>gnl|CDD|130427 TIGR01360, aden_kin_iso1, adenylate kinase, isozyme 1 subfamily.
Members of this family are adenylate kinase, EC 2.7.4.3.
This clade is found only in eukaryotes and includes
human adenylate kinase isozyme 1 (myokinase). Within the
adenylate kinase superfamily, this set appears
specifically closely related to a subfamily of
eukaryotic UMP-CMP kinases (TIGR01359), rather than to
the large clade of bacterial, archaeal, and eukaryotic
adenylate kinase family members in TIGR01351.
Length = 188
Score = 29.4 bits (66), Expect = 0.75
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 10 IIAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGISLDD--EKMAIKIA 67
II I G +GKG I +YGF +L TG + RA + + G L E + +
Sbjct: 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDL-VP 63
Query: 68 QNIVLSNLDKAQLSSNAIANVASQVASIDSVRDALID 104
+ VL L A VA++ + + LID
Sbjct: 64 LDTVLDLLKDA------------MVAALGTSKGFLID 88
>gnl|CDD|182183 PRK09986, PRK09986, DNA-binding transcriptional activator XapR;
Provisional.
Length = 294
Score = 29.3 bits (66), Expect = 0.82
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 1 MGRLESQSIIIAIDGTAAAGK--GVLSRFIA----LEYGFHYLDTGLIYRAVAKNILDAG 54
+GR E+ I I I GTA G+ + F+ +E+ L + A+ + LDAG
Sbjct: 91 IGRGEAGRIEIGIVGTALWGRLRPAMRHFLKENPNVEWLLRELSPSMQMAALERRELDAG 150
Query: 55 I 55
I
Sbjct: 151 I 151
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 29.0 bits (66), Expect = 0.97
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 183 LVRDKDAYFFD--TSEMDIGTMCKVAK 207
L+RD D YFFD TS +DI VA+
Sbjct: 227 LLRDADFYFFDEPTSYLDIRQRLNVAR 253
>gnl|CDD|178757 PLN03218, PLN03218, maturation of RBCL 1; Provisional.
Length = 1060
Score = 28.7 bits (64), Expect = 1.3
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 147 RRYNEMVSRGEKVDYVKILEDLRNRDNQDRNRSY 180
YN ++ G D + +LED+ R D ++ Y
Sbjct: 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIY 408
>gnl|CDD|184291 PRK13739, PRK13739, conjugal transfer protein TraP; Provisional.
Length = 198
Score = 28.3 bits (63), Expect = 1.5
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 136 YVTASLDIRARRRYNEMVSRGEKVD--YVKILEDLRNRDNQDRN 177
VTA D + Y E S K+ V +D NR+N D+N
Sbjct: 154 VVTA--DEHLKEVYTEDASLPGKIRKCPVYFPDDRTNRNNGDKN 195
>gnl|CDD|161782 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below.
Length = 207
Score = 28.1 bits (63), Expect = 1.7
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
Query: 116 VILDGRDIGTIIFPDAR------IKFYVTASLDIR-ARRRYNEMVSRGEKVDYV 162
VIL+G + D R +K +V LDIR RR ++ RG +D V
Sbjct: 109 VILEG----IMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSV 158
>gnl|CDD|184726 PRK14527, PRK14527, adenylate kinase; Provisional.
Length = 191
Score = 28.2 bits (63), Expect = 1.9
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 15 GTAAAGKGVLSRFIALEYGFHYLDTGLIYR----------AVAKNILDAGISLDDE 60
G AGKG + +A E G L TG I R AK I++AG + DE
Sbjct: 13 GPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDE 68
>gnl|CDD|184728 PRK14530, PRK14530, adenylate kinase; Provisional.
Length = 215
Score = 28.2 bits (63), Expect = 1.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 11 IAIDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRA 45
I + G AGKG S +A E+G ++ TG RA
Sbjct: 6 ILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRA 40
>gnl|CDD|179660 PRK03839, PRK03839, putative kinase; Provisional.
Length = 180
Score = 27.8 bits (62), Expect = 2.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 9 IIIAIDGTAAAGKGVLSRFIALEYGFHYLD 38
+IIAI GT GK +S+ +A + G+ Y+D
Sbjct: 1 MIIAITGTPGVGKTTVSKLLAEKLGYEYVD 30
>gnl|CDD|149693 pfam08715, Viral_protease, Papain like viral protease. This family
of viral proteases are similar to the papain protease
and are required for proteolytic processing of the
replicase polyprotein. The structure of this protein has
shown it adopts a fold similar that of de-ubiquitinating
enzymes.
Length = 315
Score = 27.9 bits (62), Expect = 2.1
Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 21/96 (21%)
Query: 98 VRDALIDIQRSFAQNKLGVILDGRDIGTIIFP--------------DARIKFYVT----- 138
V D ++ +S Q + GV+ D T +FP ++FY
Sbjct: 16 VHDVVVKPSKSLGQ-QFGVVYDKGKDVTGVFPADDNEDKELLVAPTVDWVRFYGFKKALY 74
Query: 139 -ASLDIRARRRYNEMVSRGEKVDYVKILEDLRNRDN 173
A+LD Y +++ K V L+ RDN
Sbjct: 75 YATLDASKYGIYLSALTQKWKFPQVGGFRVLKWRDN 110
>gnl|CDD|178435 PLN02842, PLN02842, nucleotide kinase.
Length = 505
Score = 27.5 bits (61), Expect = 2.5
Identities = 19/97 (19%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 13 IDGTAAAGKGVLSRFIALEYGFHYLDTGLIYRA----------VAKNILDAGISLDDEKM 62
I G A+GKG I ++G ++ TG + RA AK +++G + DE +
Sbjct: 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIV 61
Query: 63 AIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVR 99
+ + + + + +Q S++ ++
Sbjct: 62 IAMVTGRLSREDAKEKGWLLDGYPRSFAQAQSLEKLK 98
>gnl|CDD|180035 PRK05354, PRK05354, arginine decarboxylase; Provisional.
Length = 634
Score = 27.0 bits (61), Expect = 3.9
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 90 SQVASIDSVRDALIDIQRSFAQ-NKLGVILDGRDIG 124
SQ+A+I ++ A+ + R + + KLG + D+G
Sbjct: 255 SQIANIRDIKTAVREAARFYVELRKLGAPIQYLDVG 290
>gnl|CDD|180615 PRK06547, PRK06547, hypothetical protein; Provisional.
Length = 172
Score = 26.6 bits (59), Expect = 4.6
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 9 IIIAIDGTAAAGKGVLSRFIALEYGF 34
I + IDG + +GK L+ +A GF
Sbjct: 16 ITVLIDGRSGSGKTTLAGALAARTGF 41
>gnl|CDD|172992 PRK14526, PRK14526, adenylate kinase; Provisional.
Length = 211
Score = 26.7 bits (59), Expect = 5.0
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 3/39 (7%)
Query: 15 GTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDA 53
G +GKG +++ ++ E ++++ TG ++R NIL++
Sbjct: 7 GPPGSGKGTIAKILSNELNYYHISTGDLFRE---NILNS 42
>gnl|CDD|162904 TIGR02530, flg_new, flagellar operon protein. Members of this
family are found in a subset of bacterial flagellar
operons, generally between genes designated flgD and
flgE, in species as diverse as Bacillus halodurans and
various other Firmicutes, Geobacter sulfurreducens, and
Bdellovibrio bacteriovorus. The specific molecular
function is unknown.
Length = 96
Score = 26.3 bits (58), Expect = 5.7
Identities = 12/51 (23%), Positives = 27/51 (52%)
Query: 42 IYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVASQV 92
+ A +K + D+ I ++D + + + V++ +DK +L +N N+ V
Sbjct: 44 VEEAESKGVKDSLILMNDAALVVSLKNRTVITAMDKDELKNNVFTNIDGTV 94
>gnl|CDD|172994 PRK14528, PRK14528, adenylate kinase; Provisional.
Length = 186
Score = 26.1 bits (57), Expect = 7.4
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 15 GTAAAGKGVLSRFIALEYGFHYLDTGLIYRAVAKNILDAGI 55
G AGKG ++ + + TG I R KN GI
Sbjct: 8 GPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGI 48
>gnl|CDD|184451 PRK14013, PRK14013, hypothetical protein; Provisional.
Length = 338
Score = 25.9 bits (58), Expect = 8.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 21 KGVLSRFIALEYGFHY 36
KG L ++ LE+G HY
Sbjct: 274 KGTLDEYVYLEHGAHY 289
>gnl|CDD|183203 PRK11565, dkgA, 2,5-diketo-D-gluconate reductase A; Provisional.
Length = 275
Score = 25.8 bits (57), Expect = 8.2
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 13/101 (12%)
Query: 29 ALEYGFHYLDTGLIYR---AVAKNILDAGISLDDEKMAIKI-------AQNIVLSNLDKA 78
ALE G+ +DT IY+ V K + +A ++ ++ + K+ + + +L K
Sbjct: 37 ALEVGYRSIDTAAIYKNEEGVGKALKEASVAREELFITTKLWNDDHKRPREALEESLKKL 96
Query: 79 QLSSNAIANVASQVASIDSVRDA---LIDIQRSFAQNKLGV 116
QL + + V +ID +A +I++Q+ +GV
Sbjct: 97 QLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGV 137
>gnl|CDD|179738 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 25.8 bits (57), Expect = 8.6
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 42 IYRAVAKNILDAGISLDDEKMAIKIAQNIVLSNLDKAQLSSNAIANVASQVASIDSVRDA 101
++AV K I DA +LD E I I + I L + +A+ ++ ++ + + D
Sbjct: 35 FFKAVKKTINDAKSTLDKE---INIEE-IKEEALKYKKEFESAVESLKKKL-KFEELDDL 89
Query: 102 LIDIQ 106
I +
Sbjct: 90 KITAE 94
>gnl|CDD|181062 PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 699
Score = 25.9 bits (57), Expect = 8.7
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 12 AIDGTAAAGKGVLSRFIALEYGFHYLD 38
AI G A KGVL LE GF Y D
Sbjct: 211 AIKGIKGAAKGVLPVAKLLEGGFSYAD 237
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 25.7 bits (57), Expect = 9.0
Identities = 6/29 (20%), Positives = 14/29 (48%)
Query: 1 MGRLESQSIIIAIDGTAAAGKGVLSRFIA 29
M + + +++ + G + GK R +A
Sbjct: 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLA 29
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.137 0.376
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,472,566
Number of extensions: 225004
Number of successful extensions: 522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 53
Length of query: 217
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 127
Effective length of database: 4,049,753
Effective search space: 514318631
Effective search space used: 514318631
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)