254780458
3-phosphoshikimate 1-carboxyvinyltransferase
GeneID in NCBI database: | 8209445 | Locus tag: | CLIBASIA_01715 |
Protein GI in NCBI database: | 254780458 | Protein Accession: | YP_003064871.1 |
Gene range: | -(375960, 377309) | Protein Length: | 449aa |
Gene description: | 3-phosphoshikimate 1-carboxyvinyltransferase | ||
COG prediction: | [E] 5-enolpyruvylshikimate-3-phosphate synthase | ||
KEGG prediction: | aroA; 3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19); K00800 3-phosphoshikimate 1-carboxyvinyltransferase [EC:2.5.1.19] | ||
SEED prediction: | 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) | ||
Pathway involved in KEGG: | Phenylalanine, tyrosine and tryptophan biosynthesis [PATH:las00400] | ||
Subsystem involved in SEED: | Common Pathway For Synthesis of Aromatic Compounds (DAHP synthase to chorismate) | ||
sequence | sequence profile |
Prediction of Local Sequence Properties
Source | Summary | Result |
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Close Homologs Detected by BLAST or PSI-BLAST
Homolog within the Genome Detected by BLAST
Original result of BLAST against C. L. asiaticus genome
No hits with e-value below 0.05
Close Homologs Detected BLAST or PSI-BLAST in the First 2 Iterations
Original result of PSI-BLAST first 2 iterations
Identity | Alignment graph | Length | Definition | Round | E-value |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | |||
315122094 | 491 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | 1 | 1e-164 | |
15964006 | 455 | 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizo | 1 | 1e-127 | |
307319305 | 455 | 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizo | 1 | 1e-127 | |
241207045 | 452 | 3-phosphoshikimate 1-carboxyvinyltransferase [Rhizobium | 1 | 1e-125 | |
116249874 | 452 | 3-phosphoshikimate 1-carboxyvinyltransferase [Rhizobium | 1 | 1e-125 | |
227824085 | 448 | 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizo | 1 | 1e-123 | |
150398642 | 456 | 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizo | 1 | 1e-122 | |
8469107 | 455 | RecName: Full=3-phosphoshikimate 1-carboxyvinyltransfer | 1 | 1e-122 | |
114794061 | 455 | Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p | 1 | 1e-122 | |
18266432 | 455 | CP4EPSPS [Glycine max] Length = 455 | 1 | 1e-121 |
>gi|315122094|ref|YP_004062583.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 491 | Back alignment and organism information |
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Score = 581 bits (1498), Expect = e-164, Method: Compositional matrix adjust. Identities = 288/449 (64%), Positives = 363/449 (80%), Gaps = 4/449 (0%) Query: 1 MSFVCKKSTIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTM 60 + F+ KK +SS S GL GTIC+PGDRS+SHFSIILGG+A+GET+I G+LESDDVL T+ Sbjct: 47 LPFLYKKRPARSSCSSGLTGTICVPGDRSISHFSIILGGLASGETRISGLLESDDVLKTI 106 Query: 61 RMMHYLGARFTKKDREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFK 120 + M+ LGA FTKK+ EWI++GVGNGCLL+PE PLDF+ ++G L MG+VGVYDFQTFFK Sbjct: 107 KSMNCLGAHFTKKNGEWIIKGVGNGCLLAPESPLDFENSEIGCELTMGLVGVYDFQTFFK 166 Query: 121 GRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVV 180 G ++ + +E +L PL QMG QV + L LHGP+TPNPIVYKS M S + KSVV Sbjct: 167 G-GDLSKKAVERVLTPLIQMGTQVVPAKKNCLEFSLHGPKTPNPIVYKSSMVSARMKSVV 225 Query: 181 LLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLK 240 LLAGLN+ G+T+VIE +KTQ+HMEI+LKEFGVDLL+KSD I YSV+IEGRK++SGC+L Sbjct: 226 LLAGLNSLGVTKVIESMKTQNHMEIMLKEFGVDLLVKSDKIRGYSVQIEGRKKLSGCSLT 285 Query: 241 IPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGEN 300 IPGD S A FPLAAALLIPGS++++LNVL NP R+G+I+IL++MGADI N RIESGEN Sbjct: 286 IPGDPSFAIFPLAAALLIPGSNVQILNVLINPSRIGLINILQDMGADIVFVNHRIESGEN 345 Query: 301 IADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGII 360 IADI+VRFS +KGITIS++R+ ++DEY IL +ISAFAEG T+IKG+ ++ +Q S I+ Sbjct: 346 IADIQVRFSNLKGITISEDRMPYMIDEYSILAIISAFAEGRTVIKGMGKL---EQLSTIL 402 Query: 361 ECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVV 420 E +INN+Q E+ + L++ GVPGGKGLG +G MVQ KF +R+AMSFLVMGLASEYSV+ Sbjct: 403 EGLSINNVQCEQGENDLVVMGVPGGKGLGSRSGRMVQPKFDHRIAMSFLVMGLASEYSVI 462 Query: 421 VDDYTMISTIFPDFINLMKTLGARIEWVD 449 VDD +M STIF DFINLM+ LGARIE +D Sbjct: 463 VDDCSMASTIFQDFINLMQGLGARIERMD 491 |
Species: Candidatus Liberibacter solanacearum Genus: Candidatus Liberibacter Family: Rhizobiaceae Order: Rhizobiales Class: Alphaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
>gi|15964006|ref|NP_384359.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizobium meliloti 1021] Length = 455 | Back alignment and organism information |
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>gi|307319305|ref|ZP_07598734.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizobium meliloti AK83] Length = 455 | Back alignment and organism information |
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>gi|241207045|ref|YP_002978141.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 452 | Back alignment and organism information |
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>gi|116249874|ref|YP_765712.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 452 | Back alignment and organism information |
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>gi|227824085|ref|YP_002828058.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizobium fredii NGR234] Length = 448 | Back alignment and organism information |
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>gi|150398642|ref|YP_001329109.1| 3-phosphoshikimate 1-carboxyvinyltransferase [Sinorhizobium medicae WSM419] Length = 456 | Back alignment and organism information |
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>gi|8469107|sp|Q9R4E4|AROA_AGRSC RecName: Full=3-phosphoshikimate 1-carboxyvinyltransferase; AltName: Full=5-enolpyruvylshikimate-3-phosphate synthase; Short=EPSP synthase; Short=EPSPS Length = 455 | Back alignment and organism information |
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>gi|114794061|pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate Length = 455 | Back alignment and organism information |
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>gi|18266432|gb|AAL67577.1|AF464188_1 CP4EPSPS [Glycine max] Length = 455 | Back alignment and organism information |
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Conserved Domains in CDD Database
Detected by RPS-BLAST and HHsearch
Conserved Domains in CDD Database Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
Original result of RPS-BLASTagainst CDD database part II
Identity | Alignment graph | Length | Definition | E-value |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | ||
PRK02427 | 435 | PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltr | 5e-94 | |
PRK14806 | 735 | PRK14806, PRK14806, bifunctional cyclohexadienyl dehydr | 6e-75 | |
cd01556 | 409 | cd01556, EPSP_synthase, EPSP synthase domain | 7e-72 | |
TIGR01356 | 409 | TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltrans | 4e-69 | |
pfam00275 | 415 | pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshiki | 1e-51 | |
cd01554 | 408 | cd01554, EPT-like, Enol pyruvate transferases family in | 5e-47 | |
PRK11861 | 673 | PRK11861, PRK11861, bifunctional prephenate dehydrogena | 6e-12 | |
PLN02338 | 443 | PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltr | 7e-11 | |
COG0766 | 421 | COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl tran | 4e-07 | |
KOG0692 | 595 | KOG0692, KOG0692, KOG0692, Pentafunctional AROM protein | 2e-04 | |
COG0128 | 428 | COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synth | 2e-77 | |
PRK11860 | 661 | PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-c | 2e-10 | |
cd01555 | 400 | cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl t | 9e-07 | |
PRK09369 | 417 | PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvi | 1e-04 | |
TIGR01072 | 416 | TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyl | 2e-04 | |
PRK11860 | 661 | PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-c | 0.001 | |
cd01555 | 400 | cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl t | 0.004 |
>gnl|CDD|179423 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
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>gnl|CDD|184828 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
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>gnl|CDD|30129 cd01556, EPSP_synthase, EPSP synthase domain | Back alignment and domain information |
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>gnl|CDD|162316 TIGR01356, aroA, 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
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>gnl|CDD|144020 pfam00275, EPSP_synthase, EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Back alignment and domain information |
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>gnl|CDD|30127 cd01554, EPT-like, Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase | Back alignment and domain information |
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>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
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>gnl|CDD|177972 PLN02338, PLN02338, 3-phosphoshikimate 1-carboxyvinyltransferase | Back alignment and domain information |
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>gnl|CDD|31109 COG0766, MurA, UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>gnl|CDD|35911 KOG0692, KOG0692, KOG0692, Pentafunctional AROM protein [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|30477 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
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>gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional | Back alignment and domain information |
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>gnl|CDD|30128 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall | Back alignment and domain information |
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>gnl|CDD|181804 PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated | Back alignment and domain information |
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>gnl|CDD|162190 TIGR01072, murA, UDP-N-acetylglucosamine 1-carboxyvinyltransferase | Back alignment and domain information |
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>gnl|CDD|183342 PRK11860, PRK11860, bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional | Back alignment and domain information |
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>gnl|CDD|30128 cd01555, UdpNAET, UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall | Back alignment and domain information |
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Conserved Domains in CDD Database Detected by HHsearch
Original result of HHsearch against CDD database
Identity | Alignment graph | Length | Definition | Probability |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | ||
TIGR01356 | 444 | aroA 3-phosphoshikimate 1-carboxyvinyltransferase; Inte | 100.0 | |
COG0128 | 428 | AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino | 100.0 | |
PRK02427 | 424 | 3-phosphoshikimate 1-carboxyvinyltransferase; Provision | 100.0 | |
PRK11860 | 662 | bifunctional 3-phosphoshikimate 1-carboxyvinyltransfera | 100.0 | |
PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshikimat | 100.0 | |
cd01554 | 408 | EPT-like Enol pyruvate transferases family includes EPS | 100.0 | |
cd01556 | 409 | EPSP_synthase EPSP synthase domain. 3-phosphoshikimate | 100.0 | |
pfam00275 | 415 | EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carbo | 100.0 | |
PRK09369 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Vali | 100.0 | |
cd01555 | 400 | UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase | 100.0 | |
PRK12830 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Revi | 100.0 | |
TIGR01072 | 443 | murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 100.0 | |
COG0766 | 421 | MurA UDP-N-acetylglucosamine enolpyruvyl transferase [C | 100.0 | |
KOG0692 | 595 | consensus | 100.0 | |
TIGR01072 | 443 | murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase; | 99.92 | |
COG0766 | 421 | MurA UDP-N-acetylglucosamine enolpyruvyl transferase [C | 99.83 | |
PRK12830 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Revi | 99.79 | |
PRK11860 | 662 | bifunctional 3-phosphoshikimate 1-carboxyvinyltransfera | 99.66 | |
PRK09369 | 417 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Vali | 99.85 | |
cd01555 | 400 | UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase | 99.78 | |
PRK02427 | 424 | 3-phosphoshikimate 1-carboxyvinyltransferase; Provision | 99.71 | |
TIGR01356 | 444 | aroA 3-phosphoshikimate 1-carboxyvinyltransferase; Inte | 99.7 | |
cd01556 | 409 | EPSP_synthase EPSP synthase domain. 3-phosphoshikimate | 99.7 | |
cd01554 | 408 | EPT-like Enol pyruvate transferases family includes EPS | 99.7 | |
pfam00275 | 415 | EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carbo | 99.66 | |
COG0128 | 428 | AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino | 99.64 | |
PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshikimat | 99.43 | |
KOG0692 | 595 | consensus | 97.19 | |
cd01553 | 211 | EPT_RTPC-like This domain family includes the Enolpyruv | 98.44 | |
cd01553 | 211 | EPT_RTPC-like This domain family includes the Enolpyruv | 96.31 | |
COG0430 | 341 | RCL1 RNA 3'-terminal phosphate cyclase [RNA processing | 95.67 | |
TIGR03400 | 360 | 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1. Members | 94.6 | |
PRK04204 | 339 | RNA 3'-terminal-phosphate cyclase; Provisional | 93.28 | |
pfam01137 | 330 | RTC RNA 3'-terminal phosphate cyclase. RNA cyclases are | 93.19 | |
TIGR03399 | 326 | RNA_3prim_cycl RNA 3'-phosphate cyclase. Members of thi | 92.06 | |
cd00874 | 326 | RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (c | 92.03 | |
cd00875 | 341 | RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (cl | 91.64 | |
LOAD_rna_Cyc | 329 | consensus | 91.15 |
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro: IPR006264 These sequences represent 5-enolpyruvyl shikimate-3-phosphate synthase (EPSP_synthase) (3-phosphoshikimate-1-carboxyvinyltransferase,aroA), which catalyzes the sixth of seven steps in the shikimate pathway of the biosynthesis of chorimate | Back alignment and domain information |
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>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
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>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
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>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional | Back alignment and domain information |
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>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
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>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase | Back alignment and domain information |
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>cd01556 EPSP_synthase EPSP synthase domain | Back alignment and domain information |
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>pfam00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Back alignment and domain information |
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>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated | Back alignment and domain information |
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>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall | Back alignment and domain information |
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>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed | Back alignment and domain information |
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>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro: IPR005750 The bacterial enzyme UDP-N-acetylglucosamine (UDP-GlcNAc) enolpyruvyltransferase (MurA) catalyzes the transfer of enolpyruvate from phosphoenolpyruvate to uridine diphospho-N-acetylglucosamine, which is the first committed step of bacterial cell wall biosynthesis | Back alignment and domain information |
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>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>KOG0692 consensus | Back alignment and domain information |
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>TIGR01072 murA UDP-N-acetylglucosamine 1-carboxyvinyltransferase; InterPro: IPR005750 The bacterial enzyme UDP-N-acetylglucosamine (UDP-GlcNAc) enolpyruvyltransferase (MurA) catalyzes the transfer of enolpyruvate from phosphoenolpyruvate to uridine diphospho-N-acetylglucosamine, which is the first committed step of bacterial cell wall biosynthesis | Back alignment and domain information |
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>COG0766 MurA UDP-N-acetylglucosamine enolpyruvyl transferase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
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>PRK12830 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed | Back alignment and domain information |
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>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional | Back alignment and domain information |
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>PRK09369 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated | Back alignment and domain information |
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>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall | Back alignment and domain information |
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>PRK02427 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
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>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase; InterPro: IPR006264 These sequences represent 5-enolpyruvyl shikimate-3-phosphate synthase (EPSP_synthase) (3-phosphoshikimate-1-carboxyvinyltransferase,aroA), which catalyzes the sixth of seven steps in the shikimate pathway of the biosynthesis of chorimate | Back alignment and domain information |
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>cd01556 EPSP_synthase EPSP synthase domain | Back alignment and domain information |
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>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase | Back alignment and domain information |
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>pfam00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) | Back alignment and domain information |
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>COG0128 AroA 5-enolpyruvylshikimate-3-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
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>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
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>KOG0692 consensus | Back alignment and domain information |
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>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) | Back alignment and domain information |
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>cd01553 EPT_RTPC-like This domain family includes the Enolpyruvate transferase (EPT) family and the RNA 3' phosphate cyclase family (RTPC) | Back alignment and domain information |
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>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification] | Back alignment and domain information |
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>TIGR03400 18S_RNA_Rcl1p 18S rRNA biogenesis protein RCL1 | Back alignment and domain information |
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>PRK04204 RNA 3'-terminal-phosphate cyclase; Provisional | Back alignment and domain information |
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>pfam01137 RTC RNA 3'-terminal phosphate cyclase | Back alignment and domain information |
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>TIGR03399 RNA_3prim_cycl RNA 3'-phosphate cyclase | Back alignment and domain information |
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>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II) | Back alignment and domain information |
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>cd00875 RNA_Cyclase_Class_I RNA 3' phosphate cyclase domain (class I) This subfamily of cyclase-like proteins are encoded in eukaryotic genomes | Back alignment and domain information |
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>LOAD_rna_Cyc consensus | Back alignment and domain information |
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Homologous Structures in PDB Database
Detected by PSI-BLAST, RPS-BLAST and HHsearch
Homologous Structures Detected by PSI-BLAST against Nonredundant Database
Identity | Alignment graph | Length | Definition | E-value |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | ||
2gg4_A | 455 | Cp4 Epsp Synthase (Unliganded) Length = 455 | 2e-72 | |
2ggd_A | 455 | Cp4 Epsp Synthase Ala100gly Liganded With S3p And G | 2e-72 | |
2pqb_A | 445 | Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahed | 9e-71 | |
2pqd_A | 445 | A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Te | 1e-70 | |
1rf4_A | 427 | Structural Studies Of Streptococcus Pneumoniae Epsp | 2e-57 | |
1mi4_A | 427 | Glyphosate Insensitive G96a Mutant Epsp Synthase Li | 2e-49 | |
1g6s_A | 427 | Structure Of Epsp Synthase Liganded With Shikimate- | 2e-49 | |
2qfs_A | 427 | E.Coli Epsp Synthase Pro101ser Liganded With S3p Le | 3e-49 | |
2qfq_A | 427 | E. Coli Epsp Synthase Pro101leu Liganded With S3p L | 3e-49 | |
3fjx_A | 427 | E. Coli Epsp Synthase (T97i) Liganded With S3p Leng | 4e-49 | |
3fk0_A | 427 | E. Coli Epsp Synthase (Tips Mutation) Liganded With | 6e-49 | |
1q36_A | 427 | Epsp Synthase (Asp313ala) Liganded With Tetrahedral | 6e-49 | |
1eps_A | 427 | Structure And Topological Symmetry Of The Glyphosph | 4e-48 | |
3nvs_A | 450 | 1.02 Angstrom Resolution Crystal Structure Of 3-Pho | 1e-47 | |
1ejc_A | 419 | Crystal Structure Of Unliganded Mura (Type2) Length | 3e-42 | |
1q3g_A | 419 | Mura (Asp305ala) Liganded With Tetrahedral Reaction | 3e-42 | |
1naw_A | 419 | Enolpyruvyl Transferase Length = 419 | 5e-42 | |
3kqa_A | 419 | Mura Dead-End Complex With Terreic Acid Length = 41 | 5e-42 | |
1ryw_A | 419 | C115s Mura Liganded With Reaction Products Length = | 5e-42 | |
3kqj_A | 419 | Mura Binary Complex With Udp-N-Acetylglucosamine Le | 9e-42 | |
3iss_A | 418 | Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthas | 9e-42 | |
2z2c_A | 423 | Mura Inhibited By Unag-Cnicin Adduct Length = 423 | 9e-42 | |
1uae_A | 419 | Structure Of Udp-N-Acetylglucosamine Enolpyruvyl Tr | 1e-41 | |
3kr6_A | 419 | Mura Dead-End Complex With Fosfomycin Length = 419 | 1e-41 | |
1dlg_A | 419 | Crystal Structure Of The C115s Enterobacter Cloacae | 2e-41 | |
1a2n_A | 419 | Structure Of The C115a Mutant Of Mura Complexed Wit | 2e-41 | |
2rl1_A | 424 | Crystal Structure Of Udp-N-Acetylglucosamine Enolpy | 5e-39 | |
2yvw_A | 425 | Crystal Structure Of Udp-N-Acetylglucosamine 1- Car | 9e-30 | |
2bjb_A | 462 | Mycobacterium Tuberculosis Epsp Synthase In Unligan | 5e-28 | |
2o0b_A | 450 | Mycobacterium Tuberculosis Epsp Synthase In Complex | 5e-28 | |
3r38_A | 454 | 2.23 Angstrom Resolution Crystal Structure Of Udp-N | 2e-21 | |
1p88_A | 216 | Substrate-Induced Structural Changes To The Isolate | 2e-11 |
gi|114794058|pdb|2GG4|A Chain A, Cp4 Epsp Synthase (Unliganded) Length = 455 | Back alignment and structure |
Score = 278 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 224/451 (49%), Positives = 305/451 (67%), Gaps = 2/451 (0%) Query: 1 MSFVCKKSTIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTM 60 MS + S GL GT+ IPGD+S+SH S + GG+A+GET+I G+LE +DV+NT Sbjct: 1 MSHGASSRPATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTG 60 Query: 61 RMMHYLGARFTKKDREWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFK 120 + M +GAR K+ WI+ GVGNG LL+PE PLDF G L MG+VGVYDF + F Sbjct: 61 KAMQAMGARIRKEGDTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFI 120 Query: 121 GRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVV 180 G A + + + +L PL +MGVQVK + RLP+ L GP+TP PI Y+ PM S Q KS V Sbjct: 121 GDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAV 180 Query: 181 LLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLK 240 LLAGLNTPGIT VIEP+ T+DH E +L+ FG +L +++D ++R+EGR +++G + Sbjct: 181 LLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVID 240 Query: 241 IPGDSSIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGEN 300 +PGD S FPL AALL+PGSD+ +LNVL NP R G+I L+EMGADI + N R+ GE+ Sbjct: 241 VPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGED 300 Query: 301 IADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAFAEGETIIKGLA--EVMTSKQFSG 358 +AD+RVR S +KG+T+ ++R S++DEYPIL V +AFAEG T++ GL V S + S Sbjct: 301 VADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSA 360 Query: 359 IIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYS 418 + +N + + L+++G P GKGLG ++G V + +R+AMSFLVMGL SE Sbjct: 361 VANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENP 420 Query: 419 VVVDDYTMISTIFPDFINLMKTLGARIEWVD 449 V VDD TMI+T FP+F++LM LGA+IE D Sbjct: 421 VTVDDATMIATSFPEFMDLMAGLGAKIELSD 451 |
>gi|114794061|pdb|2GGD|A Chain A, Cp4 Epsp Synthase Ala100gly Liganded With S3p And Glyphosate Length = 455 | Back alignment and structure |
>gi|169791693|pdb|2PQB|A Chain A, Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Intermediate Analog Length = 445 | Back alignment and structure |
>gi|169791695|pdb|2PQD|A Chain A, A100g Cp4 Epsps Liganded With (R)-Difluoromethyl Tetrahedral Reaction Intermediate Analog Length = 445 | Back alignment and structure |
>gi|46015460|pdb|1RF4|A Chain A, Structural Studies Of Streptococcus Pneumoniae Epsp Synthase, Tetrahedral Intermediate Bound State Length = 427 | Back alignment and structure |
>gi|27573942|pdb|1MI4|A Chain A, Glyphosate Insensitive G96a Mutant Epsp Synthase Liganded With Shikimate-3-Phosphate Length = 427 | Back alignment and structure |
gi|13096161|pdb|1G6S|A Chain A, Structure Of Epsp Synthase Liganded With Shikimate-3- Phosphate And Glyphosate Length = 427 | Back alignment and structure |
>gi|158430187|pdb|2QFS|A Chain A, E.Coli Epsp Synthase Pro101ser Liganded With S3p Length = 427 | Back alignment and structure |
>gi|158430186|pdb|2QFQ|A Chain A, E. Coli Epsp Synthase Pro101leu Liganded With S3p Length = 427 | Back alignment and structure |
>gi|223674057|pdb|3FJX|A Chain A, E. Coli Epsp Synthase (T97i) Liganded With S3p Length = 427 | Back alignment and structure |
>gi|223674059|pdb|3FK0|A Chain A, E. Coli Epsp Synthase (Tips Mutation) Liganded With S3p Length = 427 | Back alignment and structure |
>gi|40889351|pdb|1Q36|A Chain A, Epsp Synthase (Asp313ala) Liganded With Tetrahedral Reaction Intermediate Length = 427 | Back alignment and structure |
>gi|157830987|pdb|1EPS|A Chain A, Structure And Topological Symmetry Of The Glyphosphate 5- Enol-Pyruvylshikimate-3-Phosphate Synthase: A Distinctive Protein Fold Length = 427 | Back alignment and structure |
>gi|301016109|pdb|3NVS|A Chain A, 1.02 Angstrom Resolution Crystal Structure Of 3-Phosphoshikimate 1- Carboxyvinyltransferase From Vibrio Cholerae In Complex With Shikimate-3-Phosphate (Partially Photolyzed) And Glyphosate Length = 450 | Back alignment and structure |
>gi|282403785|pdb|1EJC|A Chain A, Crystal Structure Of Unliganded Mura (Type2) Length = 419 | Back alignment and structure |
>gi|282403791|pdb|1Q3G|A Chain A, Mura (Asp305ala) Liganded With Tetrahedral Reaction Intermediate Length = 419 | Back alignment and structure |
gi|2392464|pdb|1NAW|A Chain A, Enolpyruvyl Transferase Length = 419 | Back alignment and structure |
>gi|295321799|pdb|3KQA|A Chain A, Mura Dead-End Complex With Terreic Acid Length = 419 | Back alignment and structure |
>gi|282403807|pdb|1RYW|A Chain A, C115s Mura Liganded With Reaction Products Length = 419 | Back alignment and structure |
>gi|295321803|pdb|3KQJ|A Chain A, Mura Binary Complex With Udp-N-Acetylglucosamine Length = 419 | Back alignment and structure |
>gi|282403825|pdb|3ISS|A Chain A, Crystal Structure Of Enolpyruvyl-Udp-Glcnac Synthase (Mura) :udp-N-Acetylmuramic Acid:phosphite From Escherichia Coli Length = 418 | Back alignment and structure |
>gi|282403821|pdb|2Z2C|A Chain A, Mura Inhibited By Unag-Cnicin Adduct Length = 423 | Back alignment and structure |
gi|157834054|pdb|1UAE|A Chain A, Structure Of Udp-N-Acetylglucosamine Enolpyruvyl Transferase Length = 419 | Back alignment and structure |
>gi|295321804|pdb|3KR6|A Chain A, Mura Dead-End Complex With Fosfomycin Length = 419 | Back alignment and structure |
>gi|325534097|pdb|1DLG|A Chain A, Crystal Structure Of The C115s Enterobacter Cloacae Mura In The Un- Liganded State Length = 419 | Back alignment and structure |
>gi|157829656|pdb|1A2N|A Chain A, Structure Of The C115a Mutant Of Mura Complexed With The Fluorinated Analog Of The Reaction Tetrahedral Intermediate Length = 419 | Back alignment and structure |
gi|170785034|pdb|2RL1|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine Enolpyruvyl Transferase From Haemophilus Influenzae In Complex With Udp-N-Acetylglucosamine Length = 424 | Back alignment and structure |
gi|158431289|pdb|2YVW|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine 1- Carboxyvinyltransferase From Aquifex Aeolicus Vf5 Length = 425 | Back alignment and structure |
>gi|93278857|pdb|2BJB|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Unliganded State Length = 462 | Back alignment and structure |
gi|178847075|pdb|2O0B|A Chain A, Mycobacterium Tuberculosis Epsp Synthase In Complex With S3p (Partially Photolyzed) Length = 450 | Back alignment and structure |
>gi|326634644|pdb|3R38|A Chain A, 2.23 Angstrom Resolution Crystal Structure Of Udp-N-Acetylglucosamine 1-Carboxyvinyltransferase (Mura) From Listeria Monocytogenes Egd-E Length = 454 | Back alignment and structure |
>gi|56553616|pdb|1P88|A Chain A, Substrate-Induced Structural Changes To The Isolated N- Terminal Domain Of 5-Enolpyruvylshikimate-3-Phosphate Synthase Length = 216 | Back alignment and structure |
Homologous Structures in PDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | ||
2pqc_A | 445 | 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OU | 2e-81 | |
1ejd_A | 419 | MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransfera | 2e-58 | |
3nvs_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; structura | 8e-58 | |
1rf6_A | 427 | 5-enolpyruvylshikimate-3-phosphate synthase; shikimate | 4e-54 | |
1g6s_A | 427 | EPSP synthase; two-domain structure, inside-OUT alpha-b | 6e-46 | |
2o0b_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate | 1e-32 | |
2yvw_A | 425 | UDP-N-acetylglucosamine 1- carboxyvinyltransferase; pep | 5e-29 |
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* Length = 445 | Back alignment and structure |
---|
Score = 297 bits (762), Expect = 2e-81 Identities = 222/434 (51%), Positives = 302/434 (69%), Gaps = 2/434 (0%) Query: 15 SCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKD 74 S GL GT+ IPGD+S+SH S + GG+A+GET+I G+LE +DV+NT + M +GAR K+ Sbjct: 10 SSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG 69 Query: 75 REWIVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLL 134 WI+ GVGNG LL+PE PLDF G L MG+VGVYDF + F G A + + + +L Sbjct: 70 DTWIIDGVGNGGLLAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVL 129 Query: 135 APLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVI 194 PL +MGVQVK + RLP+ L GP+TP PI Y+ PM S Q KS VLLAGLNTPGIT VI Sbjct: 130 NPLREMGVQVKSEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVI 189 Query: 195 EPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAA 254 EP+ T+DH E +L+ FG +L +++D ++R+EGR +++G + +PGD S FPL A Sbjct: 190 EPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSSTAFPLVA 249 Query: 255 ALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGI 314 ALL+PGSD+ +LNVL NP R G+I L+EMGADI + N R+ GE++AD+RVR S +KG+ Sbjct: 250 ALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGV 309 Query: 315 TISDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYER 372 T+ ++R S++DEYPIL V +AFAEG T++ GL E V S + S + +N + + Sbjct: 310 TVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDE 369 Query: 373 EGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFP 432 L+++G P GKGLG ++G V + +R+AMSFLVMGL SE V VDD TMI+T FP Sbjct: 370 GETSLVVRGRPDGKGLGNASGAAVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFP 429 Query: 433 DFINLMKTLGARIE 446 +F++LM LGA+IE Sbjct: 430 EFMDLMAGLGAKIE 443 |
>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 2z2c_A* 1uae_A* 3iss_A* 1a2n_A* 2rl1_A* 2rl2_A* Length = 419 | Back alignment and structure |
---|
>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A Length = 450 | Back alignment and structure |
---|
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* Length = 427 | Back alignment and structure |
---|
>1g6s_A EPSP synthase; two-domain structure, inside-OUT alpha-beta barrel, transferase; HET: S3P GPJ; 1.50A {Escherichia coli} SCOP: d.68.2.2 PDB: 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 1q36_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1eps_A 1p88_A 1p89_A Length = 427 | Back alignment and structure |
---|
>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A Length = 450 | Back alignment and structure |
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>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} Length = 425 | Back alignment and structure |
---|
Homologous Structures in PDB70 Database Detected by HHsearch
Original result of HHsearch against PDB70 database
Identity | Alignment graph | Length | Definition | Probability |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | ||
2pqc_A | 445 | 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OU | 100.0 | |
1rf6_A | 427 | 5-enolpyruvylshikimate-3-phosphate synthase; shikimate | 100.0 | |
3nvs_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; structura | 100.0 | |
1ejd_A | 419 | MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransfera | 100.0 | |
2o0b_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate | 100.0 | |
2yvw_A | 425 | UDP-N-acetylglucosamine 1- carboxyvinyltransferase; pep | 100.0 | |
2o0b_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate | 99.72 | |
3nvs_A | 450 | 3-phosphoshikimate 1-carboxyvinyltransferase; structura | 99.64 | |
1ejd_A | 419 | MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransfera | 99.66 | |
2pqc_A | 445 | 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OU | 99.59 | |
1rf6_A | 427 | 5-enolpyruvylshikimate-3-phosphate synthase; shikimate | 99.59 | |
2yvw_A | 425 | UDP-N-acetylglucosamine 1- carboxyvinyltransferase; pep | 99.47 |
>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* | Back alignment and structure |
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Probab=100.00 E-value=0 Score=752.41 Aligned_cols=440 Identities=50% Similarity=0.866 Sum_probs=421.7 Q ss_pred EEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCC Q ss_conf 15897068853699981842228999999997449849997798028999999999984979999899899981268875 Q gi|254780458|r 8 STIQSSYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCL 87 (449) Q Consensus 8 ~~~~~~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~ 87 (449) -++++|++++|+|+|++|||||++||+|++|||++|+|+|+|+++++||..|+++|++||++|++++++++|+|.+.+.+ T Consensus 3 ~~~~~~~~~~L~G~v~~pgSKs~~~R~L~~aal~~g~s~i~n~~~~~Dv~~m~~~L~~lG~~i~~~~~~~~I~g~~~~~~ 82 (445) T 2pqc_A 3 RPATARKSSGLSGTVRIPGDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEGDTWIIDGVGNGGL 82 (445) T ss_dssp CCEEEECCSCCEEEEECCBCHHHHHHHHHHHHHSEEEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEEEECTTCC T ss_pred CCEECCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCC T ss_conf 98772799970699976881899999999999759999992698239999999999977998999799999993688876 Q ss_pred CCCCCEEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCCEEE Q ss_conf 68531055033333220013431455310331233333446542101012312741010134322201202221111134 Q gi|254780458|r 88 LSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPEDKRLPLVLHGPRTPNPIVY 167 (449) Q Consensus 88 ~~~~~~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~~~~~Pi~I~g~~~~~~~~~ 167 (449) ..|+..+|+++||+++||++++++..++.+.++|+++|++|||++|+++|++||+++++.+++++|+.|+|+...+++.+ T Consensus 83 ~~~~~~i~~g~sgt~~r~l~~l~~~~~~~~~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~lPi~i~g~~~~~~~~i 162 (445) T 2pqc_A 83 LAPEAPLDFGNAATGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVKSEDGDRLPVTLRGPKTPTPITY 162 (445) T ss_dssp CCCSSCEECTTCHHHHHHHHHHHHTSSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTEEEEEEECCSSCCCCEE T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCCCCEEE T ss_conf 68626778765567888765554057843997586341641389999999854745760579846779986688866799 Q ss_pred EECCCCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHH Q ss_conf 30234443320000000000112223465454424444665449734441133310026752865102332002321122 Q gi|254780458|r 168 KSPMDSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSI 247 (449) Q Consensus 168 ~~~~~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ss 247 (449) ..+.+|||+++++|||++.+++.++++++..+++|++.+|+.||.++.++.+..+.++|+|+|+++|.+.+|.||+|||+ T Consensus 163 ~~~~~S~~~~s~lllaa~~~~g~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~i~g~~~~~~~~~~v~~D~s~ 242 (445) T 2pqc_A 163 RVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIRLEGRGKLTGQVIDVPGDPSS 242 (445) T ss_dssp ECSSSCHHHHHHHHHHHHTSSSEEEEEESSCCCCHHHHHHHHTTCCEEEEECTTSCEEEEEETTCCCBCCEEECCBCHHH T ss_pred ECCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCEEECCCCHHH T ss_conf 81565499999999523148995899588777779999999852665421158881699987655568847883898789 Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHH Q ss_conf 10000011225565322233323222222210000013432344422787034320256420233323464435430111 Q gi|254780458|r 248 AFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDE 327 (449) Q Consensus 248 Aa~~la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~D~ 327 (449) |+||+++|++++|+++++.|+..++.|.+++++|++||+++++.++++..++...++.++...|++++++..++|+++|+ T Consensus 243 aa~~~~aaa~~~g~~i~i~n~~~~~~~~~~l~iL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~p~~~D~ 322 (445) T 2pqc_A 243 TAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDE 322 (445) T ss_dssp HHHHHHHHHHSTTCEEEEEEEECCGGGCHHHHHHHHHTCEEEEEEEEEETTEEEEEEEEECCCCBCCEECGGGGGGTGGG T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHCCCEEEEECCEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHH T ss_conf 99999999976998599818886620789999999859979960454764860267887631456631574559975889 Q ss_pred CCCCCCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHH Q ss_conf 01112322223474100272001--2456899999999746978999889599976788766665687266048845899 Q gi|254780458|r 328 YPILLVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVA 405 (449) Q Consensus 328 ~p~Lavla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRia 405 (449) +|+|+++|++|+|+|+|+|++|+ |||||++++.++|+|||+++++++|+++|+|.+.+++....+++.++||+|||+| T Consensus 323 ~p~la~~a~~a~g~s~i~gi~~lr~kEsdRi~~~~~eL~k~G~~i~~~~d~l~I~g~~~~~~~~~~~g~~i~t~~DHRia 402 (445) T 2pqc_A 323 YPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGAAVATHLDHRIA 402 (445) T ss_dssp HHHHHHHHTTSBSEEEECCCGGGGGSSSCHHHHHHHHHHHTTCEEEECSSCEEEECCTTCTTCSCTTCCEECCTTCHHHH T ss_pred HHHHHHHHHHCCCCEEEECHHHHHCCHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHH T ss_conf 99999999847997699122673010017899999999977987998388699968866656667767678589978999 Q ss_pred HHHHHHHHHCCCCEEEECCCEECCCCCCHHHHHHHCCCEEEE Q ss_conf 999999973599589944543027786988899865978988 Q gi|254780458|r 406 MSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEW 447 (449) Q Consensus 406 Ma~~i~gl~~~~~~~I~~~~~v~ksyP~F~~~l~~LGa~ie~ 447 (449) |++++|||+++++++|+|++||+||||+||++|++|||+||. T Consensus 403 ma~~iaal~~~g~~~I~~~~~v~ksyP~f~~~l~~LGa~ie~ 444 (445) T 2pqc_A 403 MSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAKIEL 444 (445) T ss_dssp HHHHHHHTTSSSCEEESCCTTGGGTCTTHHHHHHHHTCEEEE T ss_pred HHHHHHHHHCCCCEEEECCEEEECCCHHHHHHHHHCCCEEEE T ss_conf 999999986899899956807967046099999957988995 |
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* | Back alignment and structure |
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>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A | Back alignment and structure |
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>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A* | Back alignment and structure |
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>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A | Back alignment and structure |
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>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} | Back alignment and structure |
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>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A | Back alignment and structure |
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>3nvs_A 3-phosphoshikimate 1-carboxyvinyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: S3P SKM GPJ EPE; 1.02A {Vibrio cholerae} PDB: 1g6s_A* 1g6t_A* 1x8r_A* 1x8t_A* 2aa9_A* 2aay_A* 2pq9_A* 1eps_A 1mi4_A* 3fjz_A* 3fjx_A* 2qfs_A* 2qft_A* 2qfq_A* 2qfu_A* 3fk0_A* 3fk1_A* 1q36_A* 1p88_A 1p89_A | Back alignment and structure |
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>1ejd_A MURA, EPT, UDP-N-acetylglucosamine enolpyruvyltransferase; inside-OUT alpha/beta barrel; 1.55A {Enterobacter cloacae} SCOP: d.68.2.2 PDB: 1ejc_A 1eyn_A* 1ybg_A* 1naw_A 1q3g_A* 1dlg_A 1ryw_A* 3lth_A* 3kqa_A* 3kqj_A* 2z2c_A* 1uae_A* 3iss_A* 3kr6_A* 1a2n_A* 2rl1_A* 2rl2_A* | Back alignment and structure |
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>2pqc_A 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A* | Back alignment and structure |
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>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2 PDB: 1rf5_A 1rf4_A* | Back alignment and structure |
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>2yvw_A UDP-N-acetylglucosamine 1- carboxyvinyltransferase; peptidoglycan, structural genomics, NPPSFA; HET: EPU; 1.81A {Aquifex aeolicus VF5} | Back alignment and structure |
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Homologous Domains in SCOP and MMDB Database
Detected by RPS-BLAST and HHsearch
Homologous Domains in SCOP70 (Version1.75) Database Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | E-value |
449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | |||
d1rf6a_ | 427 | d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPS | 1e-55 | |
d1g6sa_ | 427 | d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPS | 2e-37 | |
d1ejda_ | 419 | d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl trans | 1e-35 | |
d1p88a_ | 216 | d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPS | 4e-18 |
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} Length = 427 | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase species: Streptococcus pneumoniae [TaxId: 1313] Score = 211 bits (537), Expect = 1e-55 Identities = 132/428 (30%), Positives = 214/428 (50%), Gaps = 17/428 (3%) Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77 L G I +PGD+S+SH SII G +A GET++ +L +DVL+TM++ LG KD Sbjct: 10 LHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVI 69 Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137 VQGVG L +P+ L+ L+ GV+ DF+ G + + ++ + PL Sbjct: 70 TVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPL 129 Query: 138 YQMGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEP 196 +MGV + E PL L G + PI Y+ P+ S Q KS ++ A L G + +IE Sbjct: 130 KKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEK 189 Query: 197 VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAAL 256 T++H E +L++FG L + I ++G ++++G + +PGD S A F L A L Sbjct: 190 EYTRNHTEDMLQQFGGHLSVDGKKIT-----VQGPQKLTGQKVVVPGDISSAAFWLVAGL 244 Query: 257 LIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITI 316 + P S + L NV N R GIID++R MG + + I+ A + V S +KG I Sbjct: 245 IAPNSRLVLQNVGINETRTGIIDVIRAMGGKLE--ITEIDPVAKSATLIVESSDLKGTEI 302 Query: 317 SDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYEREG 374 + ++DE PI+ +++ A+G T+IK E V + + + + N Sbjct: 303 CGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTA 362 Query: 375 DYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGL-ASEYSVVVDDYTMISTIFPD 433 D ++IKG G V + +R+ M + L ++ V +D I+T +P Sbjct: 363 DGMIIKGKSALH------GARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPS 416 Query: 434 FINLMKTL 441 F + +++L Sbjct: 417 FFDDLESL 424 |
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 427 | Back information, alignment and structure |
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>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} Length = 419 | Back information, alignment and structure |
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>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} Length = 216 | Back information, alignment and structure |
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Homologous Domains in SCOP70 (Version 1.75) Database Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
Identity | Alignment graph | Length | Definition | Probability |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Candidatu | ||
d1rf6a_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {S | 100.0 | |
d1g6sa_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {E | 100.0 | |
d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, M | 100.0 | |
d1p88a_ | 216 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {E | 100.0 | |
d1ejda_ | 419 | UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, M | 99.63 | |
d1g6sa_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {E | 99.56 | |
d1rf6a_ | 427 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {S | 99.6 | |
d1p88a_ | 216 | 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {E | 99.16 | |
d1qmha2 | 239 | RNA 3'-terminal phosphate cyclase, RPTC {Escherichia co | 93.86 |
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: IF3-like superfamily: EPT/RTPC-like family: Enolpyruvate transferase, EPT domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase species: Streptococcus pneumoniae [TaxId: 1313] Probab=100.00 E-value=0 Score=693.70 Aligned_cols=416 Identities=31% Similarity=0.492 Sum_probs=381.1 Q ss_pred ECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEEECCEEEEEECCCCCCCCCCC Q ss_conf 06885369998184222899999999744984999779802899999999998497999989989998126887568531 Q gi|254780458|r 13 SYSCGLQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSPEY 92 (449) Q Consensus 13 ~~~~~L~G~i~vp~SKs~s~RaLl~AaLa~g~s~i~n~~~s~Dv~~~l~al~~LG~~i~~~~~~~~i~g~g~~~~~~~~~ 92 (449) .++++|+|+|++|||||+|||+|++|+|++|+|+|+|+++|+||..|+++|++||++|++++++++|+|.|.+.+..|+. T Consensus 5 ~~~~~l~G~i~~pgSKS~s~R~L~laaLa~g~s~i~n~~~s~Dv~~~~~~L~~lG~~i~~~~~~~~I~g~g~~~~~~~~~ 84 (427) T d1rf6a_ 5 TNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQN 84 (427) T ss_dssp CCCCCEEEEECCCBCHHHHHHHHHHHHHSBSEEEEESCCCSHHHHHHHHHHHHTTCEEEEETTEEEEECCCSSCCCCCSS T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCHH T ss_conf 68877179998378689999999999976998999379904999999999997889899759999999168877678615 Q ss_pred EEEECCCCCCCCEEEEECCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEECC-CCCCCCEEECCCCCCCEEEEECC Q ss_conf 05503333322001343145531033123333344654210101231274101013-43222012022211111343023 Q gi|254780458|r 93 PLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPE-DKRLPLVLHGPRTPNPIVYKSPM 171 (449) Q Consensus 93 ~i~~~~sgt~~r~l~~~l~~~~~~~~i~G~~~l~~Rpi~~li~~L~~lGa~i~~~~-~~~~Pi~I~g~~~~~~~~~~~~~ 171 (449) .+++++||+++||++++++..++.+.++|+++|++|||++|+++|++|||++++.+ ++.+|+.++|+...+++.+..+. T Consensus 85 ~i~~~~sgt~~r~l~~l~a~~~~~v~~~G~~~l~~RPi~~l~~~L~~lGa~i~~~~~~~~~p~~i~g~~~~~~~~i~~~~ 164 (427) T d1rf6a_ 85 ALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPI 164 (427) T ss_dssp CEECTTCHHHHHHHHHHGGGCSSEEEEECCTTGGGSCCHHHHHHHHHTTCEEEEETTTTEEEEEEECCTTCCCCEEECSS T ss_pred HHHHCCCCEEECCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHCCCEEEECCCCCCEEEECCCCCCCCCEEEECCC T ss_conf 56531443000012222245431120479813036555420006876394798303556202302477887445995357 Q ss_pred CCCCCCCEEHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHC Q ss_conf 44433200000000001122234654544244446654497344411333100267528651023320023211221000 Q gi|254780458|r 172 DSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFP 251 (449) Q Consensus 172 ~S~q~~s~lLlA~~~~~g~t~i~~~~~s~~~i~~~L~~fG~~i~~~~~~~~~~~i~i~g~~~l~~~~~~Ip~D~ssAa~~ 251 (449) +|||+++++|||++..+|.+++.+.....++++.+|++||+++.+.. ..+.|+|+++|.|.+|.||+|||+|+|| T Consensus 165 ~S~q~ts~lllaa~~~~g~~~i~~~~~~~~~t~~~L~~~G~~i~~~~-----~~i~i~~~~~l~~~~~~V~~D~s~A~~~ 239 (427) T d1rf6a_ 165 ASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDG-----KKITVQGPQKLTGQKVVVPGDISSAAFW 239 (427) T ss_dssp CCHHHHHHHHHHHTTSSEEEEEECSSCCCCHHHHHHHHTTCCCEEET-----TEEEEEECCCCBCCEEECCBCHHHHHHH T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCC-----EEEEECCCCEECCCEEECCCCHHHHHHH T ss_conf 76756443554222058943553243107789999997399752231-----2899886311167469858976789999 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCHHHCCCC Q ss_conf 00112255653222333232222222100000134323444227870343202564202333234644354301110111 Q gi|254780458|r 252 LAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPIL 331 (449) Q Consensus 252 la~a~l~~g~~i~i~n~~~~~~q~~~ldiL~~mG~~i~~~~~~~~~~~~~~~i~~~~~~l~g~~i~~~~~~~~~D~~p~L 331 (449) +++|++++|++|+++|++.++.|.+++++|++||+++++.+.+.. .......+....|++++++..++|++||++|++ T Consensus 240 l~aaal~~g~~i~i~~~~~~~~~~~~~~~l~~~g~~i~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~p~~~d~~p~l 317 (427) T d1rf6a_ 240 LVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPV--AKSATLIVESSDLKGTEICGALIPRLIDELPII 317 (427) T ss_dssp HHHHHHSTTEEEEEEEEECCTTTCHHHHHHHHTTCEEEEEEEETT--TTEEEEEEECCCCBCCEECTTSGGGTGGGHHHH T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCC--CCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHH T ss_conf 999996799879987789760016788764114530341133232--223402331266442223445588723455577 Q ss_pred CCCCCCCCCCCCCCCCHHH--HHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCCCCCCCCCCCCEEECCCCHHHHHHHH Q ss_conf 2322223474100272001--24568999999997469789998895999767887666656872660488458999999 Q gi|254780458|r 332 LVISAFAEGETIIKGLAEV--MTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFL 409 (449) Q Consensus 332 avla~~a~G~t~i~gi~~l--kesdRi~~~~~~L~~~G~~~~~~~d~l~I~G~~~~~~~~~~~~~~v~s~~DHRiaMa~~ 409 (449) +++|++|+|+|+|+|++|+ |||||+.++.++|+|||+++++++|+++|+|++. .+++.|+||+|||+|||++ T Consensus 318 a~la~~a~G~s~i~g~~~lr~kEsdRi~~~~~eL~klG~~~~~~~d~l~I~G~~~------l~g~~v~s~~DHRiama~~ 391 (427) T d1rf6a_ 318 ALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSA------LHGARVNTFGDHRIGMMTA 391 (427) T ss_dssp HHHHHTSBEEEEECSCGGGGGSSSCTTHHHHHHHHTTTCCEEEETTEEEEEECCC------CCCEEEECTTCHHHHHHHH T ss_pred HHHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEEECCCC------CCCCEEECCCCHHHHHHHH T ss_conf 7765315784000207888889989999999999977997999899999979998------8478778988199999999 Q ss_pred HHHHH-CCCCEEEECCCEECCCCCCHHHHHHHC Q ss_conf 99973-599589944543027786988899865 Q gi|254780458|r 410 VMGLA-SEYSVVVDDYTMISTIFPDFINLMKTL 441 (449) Q Consensus 410 i~gl~-~~~~~~I~~~~~v~ksyP~F~~~l~~L 441 (449) ++|+. ++++++|+|++||+||||+||++|++| T Consensus 392 i~al~~~~g~~~I~~~~~v~ksyP~F~~~l~~L 424 (427) T d1rf6a_ 392 IAALLVADGEVELDRAEAINTSYPSFFDDLESL 424 (427) T ss_dssp HHHHTCSSSCEEEETGGGGGGTCTTHHHHHHHH T ss_pred HHHHHCCCCCEEECCCCEEECCCHHHHHHHHHH T ss_conf 999965899699827837978765099999997 |
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
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>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl transferase (EPT, MurA, MurZ) {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
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>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
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>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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Homologous Domains in MMDB70 Database Detected by RPS-BLAST
Original result of RPS-BLAST against MMDB70 database
Identity | Alignment graph | Length | Definition | E-value |
Target | 449 | 3-phosphoshikimate 1-carboxyvinyltransferase [Cand | ||
2pqc_A_11-20_241-305 | 75 | (A:11-20,A:241-305) 3-phosphoshikimate 1-carboxyvi | 1e-20 | |
1rf6_A_1-17_234-296_412-427 | 96 | (A:1-17,A:234-296,A:412-427) 5-enolpyruvylshikimat | 7e-19 | |
1g6s_A_10-20_244-302_415-427 | 83 | (A:10-20,A:244-302,A:415-427) EPSP synthase; two-d | 3e-08 | |
2o0b_A_21-240 | 220 | (A:21-240) 3-phosphoshikimate 1-carboxyvinyltransf | 2e-19 | |
1g6s_A_21-243 | 223 | (A:21-243) EPSP synthase; two-domain structure, in | 5e-19 | |
1ejd_A_21-230 | 210 | (A:21-230) MURA, EPT, UDP-N-acetylglucosamine enol | 4e-15 | |
2yvw_A_30-237 | 208 | (A:30-237) UDP-N-acetylglucosamine 1- carboxyvinyl | 1e-14 | |
2o0b_A_21-240 | 220 | (A:21-240) 3-phosphoshikimate 1-carboxyvinyltransf | 7e-10 | |
1g6s_A_21-243 | 223 | (A:21-243) EPSP synthase; two-domain structure, in | 0.001 | |
1ejd_A_21-230 | 210 | (A:21-230) MURA, EPT, UDP-N-acetylglucosamine enol | 2e-05 | |
1g6s_A_21-243 | 223 | (A:21-243) EPSP synthase; two-domain structure, in | 0.002 | |
1rf6_A_297-411 | 115 | (A:297-411) 5-enolpyruvylshikimate-3-phosphate syn | 4e-11 | |
2yvw_A_1-18_295-425 | 149 | (A:1-18,A:295-425) UDP-N-acetylglucosamine 1- carb | 4e-05 | |
2o0b_A_1-9_299-409 | 120 | (A:1-9,A:299-409) 3-phosphoshikimate 1-carboxyviny | 6e-05 | |
2pqc_A_83-228 | 146 | (A:83-228) 3-phosphoshikimate 1-carboxyvinyltransf | 2e-17 | |
1rf6_A_80-220 | 141 | (A:80-220) 5-enolpyruvylshikimate-3-phosphate synt | 1e-12 | |
1ejd_A_21-230 | 210 | (A:21-230) MURA, EPT, UDP-N-acetylglucosamine enol | 0.002 | |
1ejd_A_1-20_231-419 | 209 | (A:1-20,A:231-419) MURA, EPT, UDP-N-acetylglucosam | 9e-15 | |
2o0b_A_10-20_241-298_410-450 | 110 | (A:10-20,A:241-298,A:410-450) 3-phosphoshikimate 1 | 3e-14 | |
2pqc_A_1-10_389-445 | 67 | (A:1-10,A:389-445) 3-phosphoshikimate 1-carboxyvin | 3e-13 | |
1rf6_A_18-79_221-233 | 75 | (A:18-79,A:221-233) 5-enolpyruvylshikimate-3-phosp | 7e-12 | |
2pqc_A_21-82_229-240 | 74 | (A:21-82,A:229-240) 3-phosphoshikimate 1-carboxyvi | 6e-10 | |
2pqc_A_306-388 | 83 | (A:306-388) 3-phosphoshikimate 1-carboxyvinyltrans | 4e-09 | |
1g6s_A_303-374 | 72 | (A:303-374) EPSP synthase; two-domain structure, i | 2e-04 |
>2pqc_A (A:11-20,A:241-305) 3-phosphoshikimate 1-carboxyvinyltransferase; inside-OUT alpha/beta barrel; HET: RC1; 1.60A {Agrobacterium SP} PDB: 2pqb_A* 2gg6_A* 2gg4_A* 2gga_A* 2ggd_A* 2pqd_A*Length = 75 | Back alignment and structure |
---|
Score = 95.6 bits (238), Expect = 1e-20 Identities = 38/65 (58%), Positives = 48/65 (73%) Query: 246 SIAFFPLAAALLIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIR 305 S FPL AALL+PGSD+ +LNVL NP R G+I L+EMGADI + N R+ GE++AD+R Sbjct: 11 SSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIEVINPRLAGGEDVADLR 70 Query: 306 VRFSK 310 VR S Sbjct: 71 VRSST 75 |
>1rf6_A (A:1-17,A:234-296,A:412-427) 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway, EPSP synthase, glyphosate, PEP, transferase; HET: GPJ S3P; 1.90A {Streptococcus pneumoniae}Length = 96 | Back alignment and structure |
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>1g6s_A (A:10-20,A:244-302,A:415-427) EPSP synthase; two-domain structure, inside-OUT alpha-beta barrel, transferase; HET: S3P GPJ; 1.50A {Escherichia coli}Length = 83 | Back alignment and structure |
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>2o0b_A (A:21-240) 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_ALength = 220 | Back alignment and structure |
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