HHsearch alignment for GI: 254780458 and conserved domain: COG0430
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification].
Probab=95.67 E-value=0.076 Score=30.76 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=76.1
Q ss_pred HHHHHHHCCCCEEEECCCC-------HHHHHHHHHHHHHC-CCEEEEE-CCEEEEEECCCCCCCCCCCEEEECCCCCCCC
Q ss_conf 9999974498499977980-------28999999999984-9799998-9989998126887568531055033333220
Q gi|254780458|r 34 SIILGGIAAGETQIRGVLE-------SDDVLNTMRMMHYL-GARFTKK-DREWIVQGVGNGCLLSPEYPLDFKGFDMGYG 104 (449)
Q Consensus 34 aLl~AaLa~g~s~i~n~~~-------s~Dv~~~l~al~~L-G~~i~~~-~~~~~i~g~g~~~~~~~~~~i~~~~sgt~~r 104 (449)
T Consensus 20 al~LS~ltG~pvrI~nIRa~R~~PGL~~QHltaVra~~~i~~a~v~G~e~GS~~l~F~-Pg~i~gG~~~~digTAGsi~L 98 (341)
T COG0430 20 ALALSALTGKPVRIENIRAGRANPGLKRQHLTAVRAAAEICNAEVEGAELGSTELVFR-PGKIRGGDYRVDIGTAGSITL 98 (341)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEE-CCCEECCEEEEEECCCCCEEE
T ss_conf 8989985189679998705899977279999999999986187584103362699983-462117617998137885546
Q ss_pred EE---EEECCCCC--CEEEECCCC-CCCCCCCCCE----EEEEEECCCCEEE--CCCCCCC
Q ss_conf 01---34314553--103312333-3344654210----1012312741010--1343222
Q gi|254780458|r 105 LM---MGVVGVYD--FQTFFKGRA-EILQPTIESL----LAPLYQMGVQVKL--PEDKRLP 153 (449)
Q Consensus 105 ~l---~~~l~~~~--~~~~i~G~~-~l~~Rpi~~l----i~~L~~lGa~i~~--~~~~~~P 153 (449)
T Consensus 99 vlQtlLp~~~fa~~~~~i~v~GGTdv~~aP~vDyir~v~lp~L~k~G~~~~l~vlkRG~yP 159 (341)
T COG0430 99 VLQTLLPLLLFADGPSRITVTGGTDVPWAPPVDYIRRVTLPVLRKMGIECELEVLKRGFYP 159 (341)
T ss_pred EHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 3887787773379974999977547998998204466379999861620599998324587