RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780458|ref|YP_003064871.1| 3-phosphoshikimate
1-carboxyvinyltransferase [Candidatus Liberibacter asiaticus str.
psy62]
(449 letters)
>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 427
Score = 211 bits (537), Expect = 1e-55
Identities = 132/428 (30%), Positives = 214/428 (50%), Gaps = 17/428 (3%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
L G I +PGD+S+SH SII G +A GET++ +L +DVL+TM++ LG KD
Sbjct: 10 LHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVI 69
Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137
VQGVG L +P+ L+ L+ GV+ DF+ G + + ++ + PL
Sbjct: 70 TVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPL 129
Query: 138 YQMGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEP 196
+MGV + E PL L G + PI Y+ P+ S Q KS ++ A L G + +IE
Sbjct: 130 KKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEK 189
Query: 197 VKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAAL 256
T++H E +L++FG L + I ++G ++++G + +PGD S A F L A L
Sbjct: 190 EYTRNHTEDMLQQFGGHLSVDGKKIT-----VQGPQKLTGQKVVVPGDISSAAFWLVAGL 244
Query: 257 LIPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITI 316
+ P S + L NV N R GIID++R MG + + I+ A + V S +KG I
Sbjct: 245 IAPNSRLVLQNVGINETRTGIIDVIRAMGGKLE--ITEIDPVAKSATLIVESSDLKGTEI 302
Query: 317 SDNRLRSIVDEYPILLVISAFAEGETIIKGLAE--VMTSKQFSGIIECFNINNIQYEREG 374
+ ++DE PI+ +++ A+G T+IK E V + + + + N
Sbjct: 303 CGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTA 362
Query: 375 DYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGL-ASEYSVVVDDYTMISTIFPD 433
D ++IKG G V + +R+ M + L ++ V +D I+T +P
Sbjct: 363 DGMIIKGKSALH------GARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPS 416
Query: 434 FINLMKTL 441
F + +++L
Sbjct: 417 FFDDLESL 424
>d1g6sa_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 427
Score = 150 bits (380), Expect = 2e-37
Identities = 80/431 (18%), Positives = 162/431 (37%), Gaps = 26/431 (6%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
+ GTI +PG +S+S+ +++L +A G+T + +L+SDDV + + + LG +T
Sbjct: 12 VDGTINLPGSKSVSNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRT 71
Query: 78 IVQGVGNGCLLSPEYPL--DFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLA 135
+ +GNG L E L + + + G + + I L+
Sbjct: 72 RCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVD 131
Query: 136 PLYQMGVQVK-LPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNT-PGITEV 193
L G ++ L ++ PL L G T + + S ++++ A L + +
Sbjct: 132 ALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRI 191
Query: 194 IEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLA 253
+ ++ +++I L + + V G+ S + GD+S A + LA
Sbjct: 192 KGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQSYQSPGTYLVEGDASSASYFLA 251
Query: 254 AALLIPGSDIKL-LNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIK 312
AA + G+ + + + D+L +MGA I +
Sbjct: 252 AAAIKGGTVKVTGIGRNSMQGDIRFADVLEKMGATICWGDDY------------ISCTRG 299
Query: 313 GITISDNRLRSIVDEYPILLVISAFAEGETIIKGLAEVMT--SKQFSGIIECFNINNIQY 370
+ D + I D + + FA+G T ++ + + + + +
Sbjct: 300 ELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNIYNWRVKETDRLFAMATELRKVGAEV 359
Query: 371 EREGDYLMIKGVPGGKGLGCSTGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTI 430
E DY+ I + + +R+AM F ++ L+ V + D +
Sbjct: 360 EEGHDYIRITPPEKLN------FAEIATYNDHRMAMCFSLVALSDT-PVTILDPKCTAKT 412
Query: 431 FPDFINLMKTL 441
FPD+ + +
Sbjct: 413 FPDYFEQLARI 423
>d1ejda_ d.68.2.2 (A:) UDP-N-acetylglucosamine enolpyruvyl
transferase (EPT, MurA, MurZ) {Enterobacter cloacae
[TaxId: 550]}
Length = 419
Score = 144 bits (364), Expect = 1e-35
Identities = 83/434 (19%), Positives = 153/434 (35%), Gaps = 30/434 (6%)
Query: 18 LQGTICIPGDRSLSHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREW 77
LQG + I G ++ + + +A +I+ V + D+ TM+++ LG + + W
Sbjct: 12 LQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERDGSVW 71
Query: 78 IVQGVGNGCLLSPEYPLDFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPL 137
I N + + G ++ G G I ++ + L
Sbjct: 72 IDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVS--LPGGCAIGARPVDLHIFGL 129
Query: 138 YQMGVQVKLPEDKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEVIEPV 197
++G ++KL E V + SV + ++ A G T I
Sbjct: 130 EKLGAEIKLEEGYVKASVNGRLK---GAHIVMDKVSVGATVTIMSAATLAEGTT--IIEN 184
Query: 198 KTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSIAFFPLAAALL 257
++ + F V L K + IEG +R+ G ++ D L AA
Sbjct: 185 AAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAA-- 242
Query: 258 IPGSDIKLLNVLTNPLRVGIIDILREMGADITLSNSRIESGENIADIRVRFSKIKGITIS 317
S K++ P D L + A + + + IE+GE+ + + + K +T+
Sbjct: 243 -AISGGKIVCRNAQP------DTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVR 295
Query: 318 DNRLRS-IVDEYPILLVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDY 376
+ D +++ AEG +I +I E E +
Sbjct: 296 TAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRM----GAHAEIESNT 351
Query: 377 LMIKGVPGGKGLGC-STGHMVQSKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFI 435
++ GV G +T R + S ++ G +E + VVD I +
Sbjct: 352 VICHGVEKLSGAQVMATDL--------RASASLVLAGCIAEGTTVVDRIYHIDRGYERIE 403
Query: 436 NLMKTLGARIEWVD 449
+ ++ LGA IE V
Sbjct: 404 DKLRALGANIERVK 417
>d1p88a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
synthase {Escherichia coli [TaxId: 562]}
Length = 216
Score = 86.6 bits (213), Expect = 4e-18
Identities = 41/224 (18%), Positives = 81/224 (36%), Gaps = 16/224 (7%)
Query: 31 SHFSIILGGIAAGETQIRGVLESDDVLNTMRMMHYLGARFTKKDREWIVQGVGNGCLLSP 90
S+ +++L +A G+T + +L+SDDV + + + LG +T + +GNG L
Sbjct: 1 SNRALLLAALAHGKTVLTNLLDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHA 60
Query: 91 EYPL--DFKGFDMGYGLMMGVVGVYDFQTFFKGRAEILQPTIESLLAPLYQMGVQVKLPE 148
E L + + + G + + I L+ L G ++ E
Sbjct: 61 EGALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLE 120
Query: 149 DKRLPLVLHGPRTPNPIVYKSPMDSVQSKSVVLLAGLNTPGITEV-----IEPVKTQDHM 203
+ P + V S Q + +L+ P T + + D
Sbjct: 121 QENYPPLRLQGGFTGGNVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDIT 180
Query: 204 EIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSSI 247
++K FGV++ + ++G G + + PG +
Sbjct: 181 LNLMKTFGVEIENQHYQQ----FVVKG-----GQSYQSPGTYLV 215
Score = 30.0 bits (66), Expect = 0.44
Identities = 15/116 (12%), Positives = 36/116 (31%), Gaps = 4/116 (3%)
Query: 332 LVISAFAEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCS 391
L+++A A G+T++ L + S ++ + Y D + + G L
Sbjct: 5 LLLAALAHGKTVLTNLLD---SDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAE 61
Query: 392 TGHMVQSKFGYRVAMSFLVMGLASEYSV-VVDDYTMISTIFPDFINLMKTLGARIE 446
+ + + + M ++ ++ GA+I
Sbjct: 62 GALELFLGNAGTAMRPLAAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKIT 117
Score = 27.7 bits (60), Expect = 2.2
Identities = 22/190 (11%), Positives = 66/190 (34%), Gaps = 13/190 (6%)
Query: 130 IESLLAPLYQMGVQVKLPEDKRLPLVLHGPR---TPNPIVYKSPMDSVQSKSVVLLAGLN 186
+ +L L +GV L D+ ++ + + + L
Sbjct: 26 VRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALCLG 85
Query: 187 TPGITEVIEPVKTQDHMEIILKEFGVDLLIKSDTIEDYSVRIEGRKRISGCNLKIPGDSS 246
+ I EP + + ++ + + ++ + + +G N+ + G S
Sbjct: 86 SNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGSVS 145
Query: 247 ---IAFFPLAAALLIPGSDIKLL-NVLTNPLRVGIIDILREMGADITLSNSR---IESGE 299
+ + A L + I++ ++++ P +++++ G +I + + ++ G+
Sbjct: 146 SQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQHYQQFVVKGGQ 205
Query: 300 NI---ADIRV 306
+ V
Sbjct: 206 SYQSPGTYLV 215
Score = 25.8 bits (55), Expect = 7.7
Identities = 18/172 (10%), Positives = 40/172 (23%), Gaps = 6/172 (3%)
Query: 278 IDILREMGADITLSNSRIESGENIADIRVRFSKIKGITISDNRLRSIVDEYPILLVISAF 337
++ L +G T S + + + L +
Sbjct: 30 LNALTALGVSYT------LSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPLAAALC 83
Query: 338 AEGETIIKGLAEVMTSKQFSGIIECFNINNIQYEREGDYLMIKGVPGGKGLGCSTGHMVQ 397
I+ M + +++ + + G G +
Sbjct: 84 LGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGGNVDVDGS 143
Query: 398 SKFGYRVAMSFLVMGLASEYSVVVDDYTMISTIFPDFINLMKTLGARIEWVD 449
+ A+ + + + + +NLMKT G IE
Sbjct: 144 VSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQH 195
>d1zt2b1 a.262.1.1 (B:3-209) DNA primase large subunit PriB,
N-terminal domain {Sulfolobus solfataricus [TaxId:
2287]}
Length = 207
Score = 31.4 bits (71), Expect = 0.16
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 279 DILREMGADITLSNSRIESGENIAD---IRVRFSKIKGITISDNRLRSIVDEYPILLVIS 335
D L++ G ITL++ + + + D R++ +K V + L+
Sbjct: 14 DELKKYGGGITLTDL-LLNSTTLIDQAKDRIQKTKSGDELPHYVSYNEPVLVFYTTLLSL 72
Query: 336 AFAEGETIIKGLAE 349
A +I+ A
Sbjct: 73 AILNDVKLIRRYAY 86
>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 337
Score = 26.6 bits (58), Expect = 4.5
Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
Query: 373 EGDYLMIKG-VPGGKG 387
+G Y ++KG VPG
Sbjct: 291 DGPYTLVKGSVPGPDK 306
>d2eyqa6 d.315.1.1 (A:990-1147) Transcription-repair coupling
factor, TRCF, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 158
Score = 26.2 bits (57), Expect = 5.0
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 209 EFGVDLLIKSDTIEDYSVRIEGRKRISGCN 238
E + L+ D I D + R+ KRI+
Sbjct: 16 ELRMPSLLPDDFIPDVNTRLSFYKRIASAK 45
>d1ehia2 d.142.1.1 (A:135-362) D-alanine:D-lactate ligase VanA,
C-domain {Leuconostoc mesenteroides, Ddl2 [TaxId: 1245]}
Length = 228
Score = 25.4 bits (54), Expect = 8.8
Identities = 8/46 (17%), Positives = 17/46 (36%)
Query: 172 DSVQSKSVVLLAGLNTPGITEVIEPVKTQDHMEIILKEFGVDLLIK 217
D +K ++ + G+ V + I+ E G + +K
Sbjct: 1 DKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVK 46
>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 190
Score = 25.4 bits (55), Expect = 9.2
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 261 SDIKLLNVLTNPLRVGIIDILRE 283
+D +++ V+ R I+ +LR
Sbjct: 8 TDPEVIKVMLEDTRRKILKLLRN 30
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.141 0.409
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,674,183
Number of extensions: 81978
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 17
Length of query: 449
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 361
Effective length of database: 1,199,356
Effective search space: 432967516
Effective search space used: 432967516
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)