HHsearch alignment for GI: 254780459 and conserved domain: CHL00018
>CHL00018 rpoC1 RNA polymerase beta' subunit.
Probab=92.92 E-value=0.044 Score=33.65 Aligned_cols=35 Identities=6% Similarity=0.078 Sum_probs=23.7
Q ss_pred CCCCCCCCCEEEEC---CCCCCCCCCCCCEECHHHHHCCC
Q ss_conf 31178888744214---88872277898715323310123
Q gi|254780459|r 9 KRTCPDTGKRFYDL---NKQVIVSPYTQNSWPLAYFEAPT 45 (129)
Q Consensus 9 KR~C~~Cg~KFYDl---nk~PiiCP~CG~e~~~~~~~~~~ 45 (129)
T Consensus 66 d~eC~-CG-KYK~i~~~k~~g~vCerCGVEvt~S~VRR~R 103 (668)
T CHL00018 66 SGICA-CG-NYRVIGDEKEDPKFCEQCGVEFVDSRIRRYR 103 (668)
T ss_pred CCEEE-CC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf 86675-87-7522465565762468778360401666750