HHsearch alignment for GI: 254780459 and conserved domain: CHL00018

>CHL00018 rpoC1 RNA polymerase beta' subunit.
Probab=92.92  E-value=0.044  Score=33.65  Aligned_cols=35  Identities=6%  Similarity=0.078  Sum_probs=23.7

Q ss_pred             CCCCCCCCCEEEEC---CCCCCCCCCCCCEECHHHHHCCC
Q ss_conf             31178888744214---88872277898715323310123
Q gi|254780459|r    9 KRTCPDTGKRFYDL---NKQVIVSPYTQNSWPLAYFEAPT   45 (129)
Q Consensus         9 KR~C~~Cg~KFYDl---nk~PiiCP~CG~e~~~~~~~~~~   45 (129)
T Consensus        66 d~eC~-CG-KYK~i~~~k~~g~vCerCGVEvt~S~VRR~R  103 (668)
T CHL00018         66 SGICA-CG-NYRVIGDEKEDPKFCEQCGVEFVDSRIRRYR  103 (668)
T ss_pred             CCEEE-CC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC
T ss_conf             86675-87-7522465565762468778360401666750