HHsearch alignment for GI: 254780459 and conserved domain: TIGR01405
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=92.15 E-value=0.082 Score=32.01 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=19.1
Q ss_pred CCCCCCCEEEECCCCCC----------CCCCCC--CEE
Q ss_conf 17888874421488872----------277898--715
Q gi|254780459|r 11 TCPDTGKRFYDLNKQVI----------VSPYTQ--NSW 36 (129)
Q Consensus 11 ~C~~Cg~KFYDlnk~Pi----------iCP~CG--~e~ 36 (129)
T Consensus 719 ~Cp~C--ky~Ef~~D~~~~~GfDLp~K~CP~Cgak~pl 754 (1264)
T TIGR01405 719 LCPNC--KYSEFVTDGSVGSGFDLPDKDCPKCGAKAPL 754 (1264)
T ss_pred CCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 08787--3553003787788776857888888877763