HHsearch alignment for GI: 254780459 and conserved domain: TIGR01405

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=92.15  E-value=0.082  Score=32.01  Aligned_cols=24  Identities=13%  Similarity=0.340  Sum_probs=19.1

Q ss_pred             CCCCCCCEEEECCCCCC----------CCCCCC--CEE
Q ss_conf             17888874421488872----------277898--715
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVI----------VSPYTQ--NSW   36 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~Pi----------iCP~CG--~e~   36 (129)
T Consensus       719 ~Cp~C--ky~Ef~~D~~~~~GfDLp~K~CP~Cgak~pl  754 (1264)
T TIGR01405       719 LCPNC--KYSEFVTDGSVGSGFDLPDKDCPKCGAKAPL  754 (1264)
T ss_pred             CCCCC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             08787--3553003787788776857888888877763