HHsearch alignment for GI: 254780459 and conserved domain: smart00531

>smart00531 TFIIE Transcription initiation factor IIE.
Probab=95.47  E-value=0.0095  Score=37.72  Aligned_cols=29  Identities=14%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             CCCCCCCCEEEECCC-------CCCCCCCCCCEECH
Q ss_conf             117888874421488-------87227789871532
Q gi|254780459|r   10 RTCPDTGKRFYDLNK-------QVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk-------~PiiCP~CG~e~~~   38 (129)
T Consensus       100 Y~C~~C~~ryt~~eA~~l~~~~~~F~Cp~Cg~~L~~  135 (147)
T smart00531      100 YKCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELEE  135 (147)
T ss_pred             EECCCCCCEECHHHHHHHCCCCCCEECCCCCCEEEE
T ss_conf             889999978629999884189983788999999887