HHsearch alignment of GI: 254780459 and MMDB domain: 1pft_A_

>1pft_A (A:) TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus}
Probab=94.29  E-value=0.026  Score=34.65  Aligned_cols=34  Identities=18%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHHH
Q ss_conf             83117888874--42148887227789871532331
Q gi|254780459|r    8 TKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus         8 ~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .+++||.||..  -||.++--+||..||..+.-..+
T Consensus         4 ~~~~Cp~Cg~~~iv~D~~~Ge~vC~~CG~Vlee~~i   39 (50)
T 1pft_A            4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEENII   39 (50)
T ss_dssp             SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCCCCC
T ss_pred             CCCCCCCCCCCCEEEECCCCEEECCCCCCEECCCCC
T ss_conf             655592987982788788791851269859243424