HHsearch alignment of GI: 254780459 and MMDB domain: 3k1f_M_1-57

>3k1f_M (M:1-57) Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=93.97  E-value=0.024  Score=34.89  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=28.1

Q ss_pred             HHHCCCCCCCCCCC----EEEECCCCCCCCCCCCCEEC
Q ss_conf             22278311788887----44214888722778987153
Q gi|254780459|r    4 PELGTKRTCPDTGK----RFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         4 ~elG~KR~C~~Cg~----KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .++-.+++||.||.    -.+|+.+--+||-.||-.+.
T Consensus        16 ~~~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlVi~   53 (57)
T 3k1f_M           16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS   53 (57)
T ss_dssp             SCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred             CCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC
T ss_conf             99864468989999898898879889679735891944