HHsearch alignment of GI: 254780459 and MMDB domain: 3k1f_M_1-57
>3k1f_M (M:1-57) Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=93.97 E-value=0.024 Score=34.89 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=28.1
Q ss_pred HHHCCCCCCCCCCC----EEEECCCCCCCCCCCCCEEC
Q ss_conf 22278311788887----44214888722778987153
Q gi|254780459|r 4 PELGTKRTCPDTGK----RFYDLNKQVIVSPYTQNSWP 37 (129)
Q Consensus 4 ~elG~KR~C~~Cg~----KFYDlnk~PiiCP~CG~e~~ 37 (129)
.++-.+++||.||. -.+|+.+--+||-.||-.+.
T Consensus 16 ~~~~~~~~CPeC~s~~~~lv~D~~~Ge~VC~~CGlVi~ 53 (57)
T 3k1f_M 16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (57)
T ss_dssp SCCCCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred CCCEEEEECCCCCCCCCEEEEECCCCCEECCCCCEEEC
T ss_conf 99864468989999898898879889679735891944