HHsearch results for GI: 254780459 and protein with PDBid: 2a6h_D
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=93.92 E-value=0.017 Score=34.89 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=21.7
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf 178888744214888722778987153233101
Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129)
Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129)
-| .|| ||.-....-++|+.||.|+......+
T Consensus 57 eC-~CG-kyk~~~~~g~~C~~CgVEvt~s~vRR 87 (1524)
T 2a6h_D 57 EC-ACG-KYKRQRFEGKVCERCGVEVTKSIVRR 87 (1524)
T ss_dssp CC-SSC-SSCSSTTTTCCCSSSCCCCSSTHHHH
T ss_pred EE-ECC-CCCCCCCCCEECCCCCCEECCCCHHH
T ss_conf 67-387-76552649827799987878432576