HHsearch results for GI: 254780459 and protein with PDBid: 3k7a_M

>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}

Probab=93.31  E-value=0.034  Score=33.00  Aligned_cols=34  Identities=18%  Similarity=0.251  Sum_probs=28.2

Q ss_pred             HHHCCCCCCCCCCC----EEEECCCCCCCCCCCCCEEC
Q ss_conf             22278311788887----44214888722778987153
Q gi|254780459|r    4 PELGTKRTCPDTGK----RFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         4 ~elG~KR~C~~Cg~----KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +.+-++++||.||.    -.+|...--++|-.||..+.
T Consensus        16 ~~~~~~~~C~~C~~~~~~iv~D~~~G~~vC~~CG~Vl~   53 (345)
T 3k7a_M           16 PNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS   53 (345)
T ss_dssp             -CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred             CCCCCCEECCCCCCCCCCEEEECCCCCEECCCCCCCCC
T ss_conf             99860318959999998646787889883146887804