HHSEARCH alignment of GI: 254780459 and SCOP domain: d1smyd_

Alignment

Probab=94.00  E-value=0.0099  Score=34.83  Aligned_cols=31  Identities=10%  Similarity=0.085  Sum_probs=21.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             178888744214888722778987153233101
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      -| .|| ||+=..-.-++|+.||.|+......+
T Consensus        56 eC-~CG-Kyk~~~~~g~vC~~CgVevt~s~vRR   86 (1504)
T d1smyd_          56 EC-ACG-KYKRQRFEGKVCERCGVEVTKSIVRR   86 (1504)
T ss_dssp             SC-SSC-SCCSSSSSSCCCSSSCCCCSSTHHHH
T ss_pred             EE-ECC-CCCCCCCCCEECCCCCCEECCCCHHH
T ss_conf             67-287-76652519977799986877301676

SCOP domain information

class: Multi-domain proteins (alpha and beta)
fold: beta and beta-prime subunits of DNA dependent RNA-polymerase
superfamily: beta and beta-prime subunits of DNA dependent RNA-polymerase
family: RNA-polymerase beta-prime
domain: RNA-polymerase beta-prime
species: Thermus thermophilus [TaxId: 274]