Query         gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    108 out of 275
Neff          6.5 
Searched_HMMs 13730
Date          Wed Jun  1 05:42:16 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780459.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2akla2 g.41.3.5 (A:3-40) Hypo  94.8  0.0056 4.1E-07   36.3   1.9   31   10-40      4-34  (38)
  2 d1smyd_ e.29.1.2 (D:) RNA-poly  94.0  0.0099 7.2E-07   34.8   1.7   31   11-43     56-86  (1504)
  3 d2f9yb1 c.14.1.4 (B:23-285) Ac  93.9  0.0064 4.7E-07   36.0   0.7   29   10-38      3-33  (263)
  4 d1nnqa2 g.41.5.1 (A:135-171) R  93.6   0.018 1.3E-06   33.3   2.5   29    5-35      1-29  (37)
  5 d1pfta_ g.41.3.1 (A:) Transcri  91.7   0.038 2.8E-06   31.2   2.0   31    8-38      4-36  (50)
  6 d1yuza2 g.41.5.1 (A:167-202) N  91.6   0.053 3.8E-06   30.4   2.7   27    7-35      3-29  (36)
  7 d1vd4a_ g.41.3.1 (A:) Transcri  91.5   0.058 4.2E-06   30.1   2.8   28   11-38     16-51  (62)
  8 d2gmga1 a.4.5.82 (A:1-105) Hyp  91.2   0.042 3.1E-06   31.0   1.8   27   11-37     69-95  (105)
  9 d1akya2 g.41.2.1 (A:131-168) M  91.0   0.061 4.4E-06   30.0   2.5   28    9-36      2-32  (38)
 10 d1dl6a_ g.41.3.1 (A:) Transcri  89.7   0.088 6.4E-06   29.0   2.4   34    7-40      9-44  (58)
 11 d2ey4e1 g.41.16.1 (E:4-55) Rib  89.0   0.092 6.7E-06   28.9   2.1   21   10-35      3-23  (52)
 12 d1dvpa2 g.50.1.1 (A:149-220) H  86.5    0.22 1.6E-05   26.6   2.8   35    3-38      7-41  (72)
 13 d2apob1 g.41.16.1 (B:403-457)   84.8    0.22 1.6E-05   26.6   2.2   22    9-35      4-25  (55)
 14 d2j0151 g.41.8.5 (5:2-60) Ribo  84.7    0.23 1.6E-05   26.5   2.2   22    9-34     29-50  (59)
 15 d2hf1a1 b.171.1.1 (A:2-60) Hyp  84.6    0.19 1.4E-05   27.0   1.7   30   10-39      8-38  (59)
 16 d2jnya1 b.171.1.1 (A:1-59) Unc  84.5    0.32 2.3E-05   25.6   2.8   37    3-39      4-41  (59)
 17 d2gnra1 b.40.4.15 (A:8-144) Hy  84.3    0.21 1.5E-05   26.7   1.9   23   10-35     40-62  (137)
 18 d2ct7a1 g.44.1.4 (A:8-80) Ring  84.3    0.33 2.4E-05   25.5   2.8   28    9-36     18-46  (73)
 19 d2dkta1 g.89.1.1 (A:8-81) RING  84.2    0.26 1.9E-05   26.2   2.3   25    8-36     50-74  (74)
 20 d2pk7a1 b.171.1.1 (A:3-61) Unc  84.0    0.18 1.3E-05   27.1   1.5   30   10-39      7-37  (59)
 21 d1s3ga2 g.41.2.1 (A:126-160) M  83.6     0.3 2.2E-05   25.7   2.4   28    9-36      2-32  (35)
 22 d2ak3a2 g.41.2.1 (A:125-161) M  83.5    0.25 1.9E-05   26.2   2.0   28    9-36      2-32  (37)
 23 d2k4xa1 g.41.8.8 (A:1-55) Ribo  83.1    0.31 2.2E-05   25.7   2.3   29    8-36     17-47  (55)
 24 d1zbdb_ g.50.1.1 (B:) Effector  83.0    0.29 2.1E-05   25.9   2.1   28   10-37     49-76  (124)
 25 d1zina2 g.41.2.1 (A:126-160) M  82.6    0.35 2.6E-05   25.3   2.4   28    9-36      2-32  (35)
 26 d1ltla_ b.40.4.11 (A:) DNA rep  82.5    0.36 2.6E-05   25.3   2.4   28   10-37    127-160 (239)
 27 d1m2ka_ c.31.1.5 (A:) AF1676,   81.7    0.38 2.8E-05   25.1   2.3   32    9-40    121-156 (249)
 28 d1lkoa2 g.41.5.1 (A:148-191) R  81.6    0.28   2E-05   25.9   1.6   28    7-35      6-33  (44)
 29 d1wfka_ g.50.1.1 (A:) Zinc fin  81.2    0.46 3.3E-05   24.6   2.6   30    7-37      7-36  (88)
 30 d1hk8a_ c.7.1.3 (A:) Class III  80.5    0.34 2.5E-05   25.4   1.7   25   11-35    517-542 (561)
 31 d2zjrz1 g.41.8.5 (Z:2-59) Ribo  79.9    0.34 2.5E-05   25.4   1.6   22    9-34     29-50  (58)
 32 d1joca1 g.50.1.1 (A:1348-1411)  79.6     0.5 3.6E-05   24.4   2.3   27   10-37      9-35  (64)
 33 d1e4va2 g.41.2.1 (A:122-156) M  79.5    0.41   3E-05   24.9   1.9   28    9-36      2-32  (35)
 34 d1qxfa_ g.41.8.4 (A:) Ribosoma  78.8    0.79 5.7E-05   23.2   3.2   29    8-36      6-36  (58)
 35 d1rqga3 g.41.1.1 (A:139-173) M  77.6    0.66 4.8E-05   23.7   2.5   32    9-45      2-34  (35)
 36 d1pfva3 g.41.1.1 (A:141-175) M  77.3    0.39 2.8E-05   25.1   1.2   32    9-45      2-34  (35)
 37 d1jj2y_ g.41.8.1 (Y:) Ribosoma  76.9     0.6 4.4E-05   23.9   2.1   30    7-38     25-57  (73)
 38 d1l1oc_ b.40.4.3 (C:) Replicat  75.7    0.58 4.2E-05   24.0   1.8   28   10-37     41-70  (178)
 39 d1z60a1 g.49.1.2 (A:328-386) T  73.6    0.55   4E-05   24.2   1.2   33    4-38     10-42  (59)
 40 d1dgsa1 a.60.2.2 (A:401-581) N  72.8    0.59 4.3E-05   23.9   1.2   10   11-20      5-14  (181)
 41 d2baya1 g.44.1.2 (A:1-56) Pre-  70.8    0.75 5.5E-05   23.3   1.4   30   11-44      2-31  (56)
 42 d1twfl_ g.41.9.2 (L:) RBP12 su  70.6     1.5 0.00011   21.5   2.8   30    7-36      2-31  (46)
 43 d1vfya_ g.50.1.1 (A:) vps27p p  69.8     1.4  0.0001   21.6   2.6   31    6-37      2-32  (67)
 44 d1q1aa_ c.31.1.5 (A:) Hst2 {Ba  69.6     1.1 7.7E-05   22.4   1.9   31    9-39    136-176 (289)
 45 d1jm7b_ g.44.1.1 (B:) bard1 RI  69.2     1.2 8.6E-05   22.1   2.1   30   10-43     23-52  (97)
 46 d6rxna_ g.41.5.1 (A:) Rubredox  69.1     1.2 8.5E-05   22.2   2.1   27    8-35      2-38  (45)
 47 d1j8fa_ c.31.1.5 (A:) Sirt2 hi  68.6    0.97   7E-05   22.7   1.6   31    9-39    159-198 (323)
 48 d1yc5a1 c.31.1.5 (A:1-245) NAD  65.4     1.5 0.00011   21.5   2.0   31    9-39    121-158 (245)
 49 d1s5pa_ c.31.1.5 (A:) NAD-depe  65.4       1 7.3E-05   22.5   1.1   31    9-39    113-147 (235)
 50 d1vqoz1 g.41.8.1 (Z:10-82) Rib  65.2    0.88 6.4E-05   22.9   0.8   30    7-38     25-57  (73)
 51 d2fiya1 e.59.1.1 (A:19-308) Fd  65.2     1.3 9.4E-05   21.9   1.6   32    6-37    161-201 (290)
 52 d1ryqa_ g.41.9.3 (A:) putative  65.0     1.3 9.6E-05   21.8   1.7   22    8-34      8-29  (67)
 53 d1wgma_ g.44.1.2 (A:) Ubiquiti  64.9     1.7 0.00012   21.2   2.1   32    9-44     22-53  (98)
 54 d2b4ya1 c.31.1.5 (A:36-302) NA  64.9     1.6 0.00011   21.4   2.0   31    9-39    128-184 (267)
 55 d1y02a2 g.50.1.1 (A:20-70) Rif  61.8     1.7 0.00012   21.2   1.7   27   11-38      2-28  (51)
 56 d2dkta2 g.93.1.1 (A:82-137) RI  61.4     1.6 0.00012   21.3   1.5   24    9-34      2-25  (56)
 57 d2csha1 g.37.1.1 (A:8-60) Zinc  59.1     2.7 0.00019   20.0   2.3   30   11-41      5-45  (53)
 58 d1p9ra_ c.37.1.11 (A:) Extrace  58.8     2.1 0.00015   20.6   1.8   23    8-34    294-336 (401)
 59 d1d4ua2 g.39.1.5 (A:1-36) DNA   58.3     2.5 0.00018   20.1   2.1   24   10-33      6-33  (36)
 60 d1s24a_ g.41.5.1 (A:) Two-iron  58.0       3 0.00022   19.6   2.5   27    8-35      3-46  (56)
 61 d1wd2a_ g.44.1.1 (A:) Ariadne-  58.0     1.8 0.00013   21.0   1.3   28   10-37      7-37  (60)
 62 d1yuja_ g.37.1.1 (A:) GAGA fac  56.1     1.8 0.00013   21.0   1.1   17   22-38     20-36  (54)
 63 d2cona1 g.41.15.1 (A:8-73) RNA  56.0     2.9 0.00021   19.7   2.1   22   11-34     10-31  (66)
 64 d1ma3a_ c.31.1.5 (A:) AF0112,   55.8     2.7  0.0002   19.9   1.9   31   10-40    124-162 (252)
 65 d2qam01 g.41.8.5 (0:1-56) Ribo  53.6     2.6 0.00019   20.1   1.5   19   11-34     29-47  (56)
 66 d1bora_ g.44.1.1 (A:) Acute pr  50.8     3.1 0.00022   19.6   1.6   29    9-42      6-34  (56)
 67 d1brfa_ g.41.5.1 (A:) Rubredox  49.8     4.3 0.00031   18.7   2.2   26    9-35      2-44  (53)
 68 d1wfla_ g.80.1.1 (A:) Zinc fin  49.4     4.3 0.00032   18.7   2.1   26    8-37     24-49  (74)
 69 d1ywsa1 g.41.17.1 (A:1-82) Dip  48.9     2.5 0.00018   20.1   0.8   32   10-42     23-64  (82)
 70 d1t1ha_ g.44.1.2 (A:) E3 ubiqu  47.7     3.4 0.00025   19.3   1.4   36    3-43      2-37  (78)
 71 d1fbva4 g.44.1.1 (A:356-434) C  46.1     4.2 0.00031   18.7   1.7   29   10-43     24-52  (79)
 72 d2jzaa1 b.33.1.3 (A:1-122) NAD  45.9     8.1 0.00059   17.0   3.1   33    8-40     42-81  (122)
 73 d1y0jb1 g.37.1.2 (B:1-36) U-sh  45.5     3.1 0.00022   19.6   0.9   13   26-38      8-20  (36)
 74 d1iroa_ g.41.5.1 (A:) Rubredox  44.2     5.8 0.00043   17.9   2.1   26    9-35      3-45  (53)
 75 d1x3za1 d.3.1.4 (A:8-327) Pept  43.9     5.6 0.00041   18.0   2.0   46    5-50    115-185 (320)
 76 d1vm9a_ b.33.1.1 (A:) Toluene-  43.4     5.3 0.00039   18.1   1.8   33    8-40     40-74  (109)
 77 d1wgea1 g.41.17.1 (A:8-77) Del  43.0     3.9 0.00029   18.9   1.1   26   10-36     24-55  (70)
 78 d2ct1a2 g.37.1.1 (A:8-43) Tran  42.8     4.6 0.00034   18.5   1.4   20   23-42      5-24  (36)
 79 d2cota2 g.37.1.1 (A:7-44) Zinc  42.7     4.6 0.00034   18.5   1.4   18   23-40      9-26  (38)
 80 d1wfha_ g.80.1.1 (A:) Zinc fin  42.4     7.5 0.00054   17.2   2.5   27    7-37     13-39  (64)
 81 d2f4ma1 d.3.1.4 (A:164-450) Pe  41.7     7.6 0.00055   17.2   2.4   45    5-49     77-143 (287)
 82 d2aqaa1 g.41.16.1 (A:2-58) H/a  41.7     5.3 0.00039   18.1   1.6   18   14-35      8-25  (57)
 83 d2dlqa2 g.37.1.1 (A:35-62) GLI  40.6     3.8 0.00028   19.0   0.7   11   26-36      1-11  (28)
 84 d2adra1 g.37.1.1 (A:102-130) A  40.5     4.4 0.00032   18.6   1.1   17   25-41      1-17  (29)
 85 d2c2la2 g.44.1.2 (A:225-304) S  39.9       7 0.00051   17.4   2.0   29   10-43      8-36  (80)
 86 d1v54f_ g.41.5.3 (F:) Cytochro  38.7     7.9 0.00058   17.1   2.1   23   16-38     68-91  (98)
 87 d1wjpa2 g.37.1.1 (A:43-66) Zin  38.3     4.4 0.00032   18.6   0.8   10   27-36      1-10  (26)
 88 d1srka_ g.37.1.1 (A:) Zinc fin  37.7     6.4 0.00046   17.6   1.5   20   23-42      4-23  (35)
 89 d1p91a_ c.66.1.33 (A:) rRNA me  37.3     6.2 0.00045   17.7   1.4   25   11-37      3-27  (268)
 90 d1a1ia2 g.37.1.1 (A:132-159) Z  37.1     5.9 0.00043   17.8   1.3   15   25-39      2-16  (28)
 91 d1rmda2 g.44.1.1 (A:1-86) V(D)  36.9     8.2 0.00059   17.0   1.9   27   10-41     24-50  (86)
 92 d1wffa_ g.80.1.1 (A:) ANUBL1 (  36.6      10 0.00076   16.3   2.4   25   10-37     26-50  (85)
 93 d1x6ea1 g.37.1.1 (A:8-40) Zinc  36.1     7.1 0.00051   17.4   1.5   18   23-40      4-21  (33)
 94 d1p7aa_ g.37.1.1 (A:) Kruppel-  35.9     6.9  0.0005   17.4   1.4   19   23-41      8-26  (37)
 95 d1x68a2 g.39.1.3 (A:37-70) Fou  35.8     4.5 0.00033   18.6   0.5   25   12-37      2-31  (34)
 96 d2dsxa1 g.41.5.1 (A:1-52) Rubr  35.7     9.5 0.00069   16.6   2.1   18   17-35     28-45  (52)
 97 d1sp1a_ g.37.1.1 (A:) Transcri  35.4     5.8 0.00042   17.9   1.0   15   25-39      1-15  (29)
 98 d1x4la2 g.39.1.3 (A:37-66) Fou  35.3     1.6 0.00012   21.3  -1.9   24   12-35      2-29  (30)
 99 d1x6ea2 g.37.1.1 (A:41-66) Zin  35.1     6.7 0.00049   17.5   1.3   16   25-40      1-16  (26)
100 d1vqo11 g.41.8.2 (1:1-56) Ribo  34.5      10 0.00074   16.4   2.1   23   10-34     17-39  (56)
101 d1dx8a_ g.41.5.1 (A:) Rubredox  34.4      10 0.00076   16.3   2.2   27    8-35      6-49  (70)
102 d1fqta_ b.33.1.1 (A:) Rieske-t  33.9     8.1 0.00059   17.0   1.5   31   10-40     41-74  (109)
103 d1twfi2 g.41.3.1 (I:50-121) RB  31.8     8.4 0.00061   16.9   1.3   33    8-40     22-65  (72)
104 d3c0da1 b.33.1.3 (A:4-111) NAD  31.4      10 0.00074   16.4   1.7   32    9-40     41-79  (108)
105 d1wfpa_ g.80.1.1 (A:) Zinc fin  31.4      15  0.0011   15.3   2.6   26    8-37     24-49  (74)
106 d1a1ia3 g.37.1.1 (A:160-187) Z  30.8       8 0.00058   17.0   1.1   14   25-38      2-15  (28)
107 d1ubdc2 g.37.1.1 (C:323-350) Y  30.8     7.6 0.00056   17.2   1.0   16   27-42      3-18  (28)
108 d1x6ha2 g.37.1.1 (A:8-43) Tran  30.7     9.7  0.0007   16.5   1.5   20   23-42      5-24  (36)
109 d1exka_ g.54.1.1 (A:) Cysteine  30.7     8.3 0.00061   16.9   1.2   30    5-34      7-36  (79)
110 d1jm7a_ g.44.1.1 (A:) brca1 RI  30.2     3.7 0.00027   19.1  -0.7   24   11-39     23-46  (103)
111 d1hxra_ b.88.1.1 (A:) RabGEF M  30.1     8.7 0.00064   16.8   1.2   15   22-36      8-22  (115)
112 d2ct1a1 g.37.1.1 (A:44-71) Tra  29.7     8.3 0.00061   16.9   1.0   11   28-38      4-14  (28)
113 d2jnea1 g.41.18.1 (A:1-71) Hyp  29.0       8 0.00058   17.0   0.8   29    5-37     13-42  (71)
114 d2gyc11 g.41.8.6 (1:1-52) Ribo  29.0      16  0.0012   15.2   2.4   27    8-34      8-44  (52)
115 d1bboa1 g.37.1.1 (A:1-28) Enha  28.9     7.6 0.00055   17.2   0.7   16   28-43      3-19  (28)
116 d2pw4a1 d.380.1.1 (A:1-184) Un  28.1      14   0.001   15.6   1.9   32    3-34    138-174 (184)
117 d2j9ub1 g.41.11.1 (B:115-161)   28.1      18  0.0013   14.9   2.8   35   10-44      4-44  (47)
118 d1bhia_ g.37.1.1 (A:) Transact  28.0      11 0.00079   16.2   1.4   19   24-42      4-24  (38)
119 d2csha2 g.37.1.1 (A:61-104) Zi  27.8     9.9 0.00072   16.5   1.1   12   25-36      4-15  (44)
120 d1x6ha1 g.37.1.1 (A:44-80) Tra  27.7      10 0.00073   16.4   1.1   14   26-39      4-17  (37)
121 d1vyxa_ g.44.1.3 (A:) IE1B pro  25.4      11 0.00079   16.2   1.0   28   11-38      8-35  (60)
122 d1weoa_ g.44.1.1 (A:) Cellulos  25.4      13 0.00094   15.7   1.4   11   26-36     58-68  (93)
123 d2ea9a1 d.110.8.1 (A:8-110) Hy  24.8     6.8  0.0005   17.4  -0.1   18    1-18      1-19  (103)
124 d2bmoa1 b.33.1.2 (A:3-152) Nit  24.5      17  0.0013   15.0   1.9   30   11-40     76-108 (150)
125 d2jo6a1 b.33.1.3 (A:1-108) NAD  24.3      13 0.00096   15.7   1.2   33    8-40     42-81  (108)
126 d1ps9a3 c.4.1.1 (A:331-465,A:6  24.2     8.8 0.00064   16.8   0.3   29   10-38      2-35  (179)
127 d1xg8a_ c.47.1.17 (A:) Hypothe  24.0     7.7 0.00056   17.1   0.0   10    6-15     13-22  (111)
128 d1sp2a_ g.37.1.1 (A:) Transcri  23.8      13 0.00093   15.8   1.1   18   25-42      1-20  (31)
129 d1se0a_ g.52.1.1 (A:) BIR doma  23.6      17  0.0012   15.1   1.7   19   18-36     30-49  (97)
130 d1ubdc3 g.37.1.1 (C:351-380) Y  23.0      14   0.001   15.5   1.2   18   25-42      1-20  (30)
131 d2glia3 g.37.1.1 (A:168-197) F  23.0      13 0.00094   15.8   1.0   18   25-42      1-20  (30)
132 d1iyma_ g.44.1.1 (A:) EL5 RING  22.6      22  0.0016   14.4   2.1   32   11-43      7-38  (55)
133 d1b8ta3 g.39.1.3 (A:101-143) C  22.4      18  0.0013   14.9   1.6   21    4-24     10-30  (43)
134 d1ur6b_ g.44.1.1 (B:) Not-4 N-  22.3      15  0.0011   15.3   1.3   27   12-39      3-29  (52)
135 d1cl4a_ g.40.1.1 (A:) Nucleoca  22.0      14   0.001   15.5   1.0   12   26-37      2-13  (32)
136 d1ubdc4 g.37.1.1 (C:381-408) Y  21.8      14   0.001   15.5   1.0   16   25-40      1-18  (28)
137 d1lv3a_ g.39.1.9 (A:) Hypothet  21.5      19  0.0014   14.8   1.6   10   27-36      7-16  (65)
138 d2pu9a1 g.36.1.1 (A:8-115) Fer  21.4       7 0.00051   17.4  -0.6   34    5-42     42-90  (108)
139 d1i3oe_ g.52.1.1 (E:) BIR doma  21.2      15  0.0011   15.4   1.0   18   19-36     63-81  (111)
140 d1wfea_ g.80.1.1 (A:) AN1-type  21.1      24  0.0018   14.1   2.7   27   11-39     27-53  (86)
141 d1x61a2 g.39.1.3 (A:35-66) Thy  20.8      23  0.0017   14.2   1.9   15   11-25      1-20  (32)
142 d1chca_ g.44.1.1 (A:) Immediat  20.3      20  0.0015   14.6   1.5   27   11-41      7-33  (68)
143 d2de6a1 b.33.1.2 (A:1-142) Ter  20.3      21  0.0016   14.4   1.7   30   10-39     67-100 (142)
144 d2qfaa1 g.52.1.1 (A:5-141) Ant  20.3      19  0.0014   14.7   1.4   13   24-36     48-60  (137)
145 d1njqa_ g.37.1.3 (A:) SUPERMAN  20.3      18  0.0013   14.9   1.3   16   27-42      6-21  (37)

No 1  
>d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=94.78  E-value=0.0056  Score=36.33  Aligned_cols=31  Identities=16%  Similarity=0.443  Sum_probs=26.8

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHH
Q ss_conf             1178888744214888722778987153233
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      --||.|+.-|-=-...-.|||.||.||.+..
T Consensus         4 P~CP~C~seytYedg~l~vCPeC~hEW~~~~   34 (38)
T d2akla2           4 PPCPQCNSEYTYEDGALLVCPECAHEWSPNE   34 (38)
T ss_dssp             CCCTTTCCCCCEECSSSEEETTTTEEECTTT
T ss_pred             CCCCCCCCCCEECCCCEEECCCCCCCCCCCC
T ss_conf             8688789803573799978975557478543


No 2  
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]}
Probab=94.00  E-value=0.0099  Score=34.83  Aligned_cols=31  Identities=10%  Similarity=0.085  Sum_probs=21.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             178888744214888722778987153233101
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      -| .|| ||+=..-.-++|+.||.|+......+
T Consensus        56 eC-~CG-Kyk~~~~~g~vC~~CgVevt~s~vRR   86 (1504)
T d1smyd_          56 EC-ACG-KYKRQRFEGKVCERCGVEVTKSIVRR   86 (1504)
T ss_dssp             SC-SSC-SCCSSSSSSCCCSSSCCCCSSTHHHH
T ss_pred             EE-ECC-CCCCCCCCCEECCCCCCEECCCCHHH
T ss_conf             67-287-76652519977799986877301676


No 3  
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]}
Probab=93.94  E-value=0.0064  Score=35.97  Aligned_cols=29  Identities=21%  Similarity=0.552  Sum_probs=23.1

Q ss_pred             CCCCCCCCEEE--ECCCCCCCCCCCCCEECH
Q ss_conf             11788887442--148887227789871532
Q gi|254780459|r   10 RTCPDTGKRFY--DLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~   38 (129)
                      +.||+|+...|  ||.+.==|||+||.-|.+
T Consensus         3 ~~C~~C~~~~~~~~l~~~~~vC~~C~~h~~l   33 (263)
T d2f9yb1           3 TKCDSCGQVLYRAELERNLEVCPKCDHHMRM   33 (263)
T ss_dssp             ECCTTTCCCEETTHHHHTTTBCTTTCCBCCC
T ss_pred             CCCCCCCCEEEHHHHHHHCCCCCCCCCCCCC
T ss_conf             7178776502699999858899399899876


No 4  
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=93.63  E-value=0.018  Score=33.26  Aligned_cols=29  Identities=21%  Similarity=0.258  Sum_probs=25.1

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             2278311788887442148887227789871
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      |.++..+|+.||--+.+  .-|-.||-||+-
T Consensus         1 E~~~~~~C~vCG~i~~g--~~P~~CPvCg~~   29 (37)
T d1nnqa2           1 EIKKVYICPICGYTAVD--EAPEYCPVCGAP   29 (37)
T ss_dssp             CCSCEEECTTTCCEEES--CCCSBCTTTCCB
T ss_pred             CCCCEEECCCCCCEECC--CCCCCCCCCCCC
T ss_conf             97767989989988618--778848889985


No 5  
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=91.67  E-value=0.038  Score=31.23  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=25.7

Q ss_pred             CCCCCCCCCCE--EEECCCCCCCCCCCCCEECH
Q ss_conf             83117888874--42148887227789871532
Q gi|254780459|r    8 TKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         8 ~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~   38 (129)
                      .+|+||.||.+  .+|..+--++|-.||..+.-
T Consensus         4 ~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~Viee   36 (50)
T d1pfta_           4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEE   36 (50)
T ss_dssp             SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred             CCCCCCCCCCCCEEEECCCCEEECCCCCCEECC
T ss_conf             553484887983788878790850049869252


No 6  
>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=91.63  E-value=0.053  Score=30.38  Aligned_cols=27  Identities=15%  Similarity=0.167  Sum_probs=23.6

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             78311788887442148887227789871
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      ++..+|+.||--+..  .-|-.||-||+-
T Consensus         3 ~~~~vC~vCGyi~~g--~~Pe~CPvCg~~   29 (36)
T d1yuza2           3 DKFHLCPICGYIHKG--EDFEKCPICFRP   29 (36)
T ss_dssp             CCEEECSSSCCEEES--SCCSBCTTTCCB
T ss_pred             CCEEECCCCCCEEEC--CCCCCCCCCCCC
T ss_conf             888978989998628--888848889986


No 7  
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.53  E-value=0.058  Score=30.14  Aligned_cols=28  Identities=14%  Similarity=0.326  Sum_probs=23.0

Q ss_pred             CCCCCCCEE--------EECCCCCCCCCCCCCEECH
Q ss_conf             178888744--------2148887227789871532
Q gi|254780459|r   11 TCPDTGKRF--------YDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        11 ~C~~Cg~KF--------YDlnk~PiiCP~CG~e~~~   38 (129)
                      +||.|+++|        +|+...-.+|-+|++++..
T Consensus        16 ~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~el~e   51 (62)
T d1vd4a_          16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE   51 (62)
T ss_dssp             ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred             ECCCCCCCCCHHHHHHHCCCCCCEEEECCCCCEEEC
T ss_conf             889988880554387736967893973588999753


No 8  
>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}
Probab=91.16  E-value=0.042  Score=30.99  Aligned_cols=27  Identities=19%  Similarity=0.292  Sum_probs=22.9

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             178888744214888722778987153
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .|-+||--|=+--|.|=-||.|..+|.
T Consensus        69 ~CrkCGfvFr~~~kkPSRCP~CKSE~I   95 (105)
T d2gmga1          69 QCRKCGFVFKAEINIPSRCPKCKSEWI   95 (105)
T ss_dssp             BBTTTCCBCCCCSSCCSSCSSSCCCCB
T ss_pred             HHHHCCCEECCCCCCCCCCCCCCCCCC
T ss_conf             152367760566899998998887263


No 9  
>d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=90.95  E-value=0.061  Score=30.01  Aligned_cols=28  Identities=11%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             CCCCCCCCCEEEECCCCC---CCCCCCCCEE
Q ss_conf             311788887442148887---2277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQV---IVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~   36 (129)
                      -|+|++||+-|-.+.+.|   =+|-.||.++
T Consensus         2 Rr~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L   32 (38)
T d1akya2           2 RLIHPASGRSYHKIFNPPKEDMKDDVTGEAL   32 (38)
T ss_dssp             EEECTTTCCEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCCCCCCCHHHHHCCCCCCCCCCCCCCCEE
T ss_conf             6688474664544235867678457889985


No 10 
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.70  E-value=0.088  Score=29.01  Aligned_cols=34  Identities=15%  Similarity=0.115  Sum_probs=26.9

Q ss_pred             CCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHH
Q ss_conf             783117888874--4214888722778987153233
Q gi|254780459|r    7 GTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         7 G~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~   40 (129)
                      =.|-.||.||.+  .||..+--++|-.||..+.-..
T Consensus         9 ~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~Vlee~~   44 (58)
T d1dl6a_           9 LPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRV   44 (58)
T ss_dssp             CSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSC
T ss_pred             CCCCCCCCCCCCCEEEECCCCCEECCCCCCEECCCC
T ss_conf             566689799798777887888285035998905413


No 11 
>d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=89.04  E-value=0.092  Score=28.90  Aligned_cols=21  Identities=38%  Similarity=0.896  Sum_probs=18.0

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             11788887442148887227789871
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      |.|++||.  |-|.+   +||.||..
T Consensus         3 rkC~~C~~--YTL~~---~CP~CG~~   23 (52)
T d2ey4e1           3 RKCPKCGR--YTLKE---VCPVCGEK   23 (52)
T ss_dssp             EECTTTCC--EESSS---BCTTTCCB
T ss_pred             CCCCCCCC--EECCC---CCCCCCCC
T ss_conf             30774666--44445---28678885


No 12 
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=86.51  E-value=0.22  Score=26.55  Aligned_cols=35  Identities=11%  Similarity=0.144  Sum_probs=28.7

Q ss_pred             CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             522278311788887442148887227789871532
Q gi|254780459|r    3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      .|.|=-=+.|+.|+++|= |-+..-.|..||..|=.
T Consensus         7 ~p~W~~~~~C~~C~~~F~-~~~rrhhCr~CG~~~C~   41 (72)
T d1dvpa2           7 APNWADGRVCHRCRVEFT-FTNRKHHCRNCGQVFCG   41 (72)
T ss_dssp             CCCCCCCSBCTTTCCBCC-SSSCCEECTTTCCEECS
T ss_pred             CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEECH
T ss_conf             998976874346899005-75444244216896491


No 13 
>d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=84.83  E-value=0.22  Score=26.57  Aligned_cols=22  Identities=27%  Similarity=0.712  Sum_probs=18.3

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             311788887442148887227789871
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      =|.|++||.  |-|.+   +||.||..
T Consensus         4 lrkC~~C~~--YTL~~---~CP~CG~~   25 (55)
T d2apob1           4 MKKCPKCGL--YTLKE---ICPKCGEK   25 (55)
T ss_dssp             CEECTTTCC--EESSS---BCSSSCSB
T ss_pred             EEECCCCCC--EECCC---CCCCCCCC
T ss_conf             234873665--43345---27678886


No 14 
>d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]}
Probab=84.74  E-value=0.23  Score=26.51  Aligned_cols=22  Identities=18%  Similarity=0.327  Sum_probs=17.8

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             31178888744214888722778987
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      =..|++||.    +.+.=-+||+||.
T Consensus        29 l~~C~~CG~----~~~pHrvC~~CG~   50 (59)
T d2j0151          29 LVPCPECKA----MKPPHTVCPECGY   50 (59)
T ss_dssp             CBCCSSSSS----CBCTTCBCTTTCC
T ss_pred             EEECCCCCC----CCCCEEECCCCCE
T ss_conf             468899998----1066068798980


No 15 
>d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]}
Probab=84.61  E-value=0.19  Score=26.96  Aligned_cols=30  Identities=17%  Similarity=0.409  Sum_probs=24.9

Q ss_pred             CCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             1178888744-21488872277898715323
Q gi|254780459|r   10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      -.||.|+.++ |+-++.-++|+.||..|++.
T Consensus         8 L~CP~ck~~L~~~~~~~~Lvc~~~~l~YPI~   38 (59)
T d2hf1a1           8 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK   38 (59)
T ss_dssp             CBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             HCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             3587989863695889989638768445441


No 16 
>d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=84.53  E-value=0.32  Score=25.60  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=27.6

Q ss_pred             CHHHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             52227831178888744-21488872277898715323
Q gi|254780459|r    3 KPELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         3 K~elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      +++|=-=-.||.|+.++ |+-.+.-++|+.||..|++.
T Consensus         4 ~~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~   41 (59)
T d2jnya1           4 DPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRID   41 (59)
T ss_dssp             CGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEE
T ss_pred             CHHHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC
T ss_conf             97999871587999870796889989748648545252


No 17 
>d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=84.35  E-value=0.21  Score=26.71  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=18.3

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             11788887442148887227789871
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      +.|.+||.-||=-  .+ .||.||..
T Consensus        40 ~~C~~CG~v~~Pp--r~-~Cp~C~s~   62 (137)
T d2gnra1          40 SKCSKCGRIFVPA--RS-YCEHCFVK   62 (137)
T ss_dssp             EECTTTCCEEESC--CS-EETTTTEE
T ss_pred             EECCCCCCEEECC--CC-CCCCCCCC
T ss_conf             9818999888575--04-67998998


No 18 
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.33  E-value=0.33  Score=25.54  Aligned_cols=28  Identities=14%  Similarity=0.302  Sum_probs=21.1

Q ss_pred             CCCCCCCCCEE-EECCCCCCCCCCCCCEE
Q ss_conf             31178888744-21488872277898715
Q gi|254780459|r    9 KRTCPDTGKRF-YDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~   36 (129)
                      -|-||.||.-+ ++-+-.-++||.||..|
T Consensus        18 ~k~CP~C~~~~~~~~~~~~~~C~~C~~~f   46 (73)
T d2ct7a1          18 FLWCAQCSFGFIYEREQLEATCPQCHQTF   46 (73)
T ss_dssp             EECCSSSCCCEECCCSCSCEECTTTCCEE
T ss_pred             CCCCCCCCCEEEECCCCCEEECCCCCCEE
T ss_conf             88999999976877999987869989917


No 19 
>d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=84.25  E-value=0.26  Score=26.18  Aligned_cols=25  Identities=8%  Similarity=0.042  Sum_probs=11.7

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             83117888874421488872277898715
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      .+-+|..||.++    +.|..||+||..|
T Consensus        50 ~~l~CH~Cg~~~----~~~~~C~~Cgs~F   74 (74)
T d2dkta1          50 KEVQCINCEKLQ----HAQQTCEDCSTLF   74 (74)
T ss_dssp             CCEEESSSCCEE----CSCSBCSSSCCBS
T ss_pred             CEEEECCCCCCC----CCCCCCCCCCCCC
T ss_conf             879835679744----3788487878879


No 20 
>d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]}
Probab=84.03  E-value=0.18  Score=27.05  Aligned_cols=30  Identities=17%  Similarity=0.335  Sum_probs=24.5

Q ss_pred             CCCCCCCCEE-EECCCCCCCCCCCCCEECHH
Q ss_conf             1178888744-21488872277898715323
Q gi|254780459|r   10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~   39 (129)
                      -+||.|+.++ |+-++.-++|+.||-.|++.
T Consensus         7 L~CP~ck~~L~~~~~~~~Lvc~~~~laYPI~   37 (59)
T d2pk7a1           7 LACPICKGPLKLSADKTELISKGAGLAYPIR   37 (59)
T ss_dssp             CCCTTTCCCCEECTTSSEEEETTTTEEEEEE
T ss_pred             EECCCCCCCCEEECCCCEEECCCCCCCCCCC
T ss_conf             4787989865694889989648758554240


No 21 
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=83.64  E-value=0.3  Score=25.73  Aligned_cols=28  Identities=14%  Similarity=0.113  Sum_probs=20.9

Q ss_pred             CCCCCCCCCEEEECCCC---CCCCCCCCCEE
Q ss_conf             31178888744214888---72277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQ---VIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~   36 (129)
                      -|+|++||+-|=...+.   +=+|=.||.+.
T Consensus         2 R~~C~~CG~~Yh~~~~pPk~~g~CD~cg~~L   32 (35)
T d1s3ga2           2 RRICKVCGTSYHLLFNPPQVEGKCDKDGGEL   32 (35)
T ss_dssp             EEEETTTCCEEETTTBCCSBTTBCTTTCCBE
T ss_pred             CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             6688574751145667988888367989995


No 22 
>d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=83.52  E-value=0.25  Score=26.19  Aligned_cols=28  Identities=11%  Similarity=0.152  Sum_probs=21.5

Q ss_pred             CCCCCCCCCEEEECCC---CCCCCCCCCCEE
Q ss_conf             3117888874421488---872277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNK---QVIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk---~PiiCP~CG~e~   36 (129)
                      -|+||+||+-|=-+.+   .+-+|=.||.++
T Consensus         2 R~vc~~cG~~Yh~~~~pPk~~g~CD~cg~~L   32 (37)
T d2ak3a2           2 RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPL   32 (37)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CEEECCCCCHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             5051775870210457744668864779827


No 23 
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}
Probab=83.14  E-value=0.31  Score=25.71  Aligned_cols=29  Identities=17%  Similarity=0.289  Sum_probs=22.6

Q ss_pred             CCCCCCCCCC-EEEECCCCCCCCCCCCC-EE
Q ss_conf             8311788887-44214888722778987-15
Q gi|254780459|r    8 TKRTCPDTGK-RFYDLNKQVIVSPYTQN-SW   36 (129)
Q Consensus         8 ~KR~C~~Cg~-KFYDlnk~PiiCP~CG~-e~   36 (129)
                      ++|.||.||. -|-=-.++-..|=+||- +|
T Consensus        17 ~~k~CP~CG~GvFmA~H~dR~~CGKCgyTef   47 (55)
T d2k4xa1          17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTEF   47 (55)
T ss_dssp             SSCCCTTTTTTCCCEECSSEEECTTTCCCEE
T ss_pred             ECCCCCCCCCCEEEEECCCCCCCCCCCCCEE
T ss_conf             2474959999577412589766347756179


No 24 
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=83.01  E-value=0.29  Score=25.88  Aligned_cols=28  Identities=14%  Similarity=0.150  Sum_probs=22.9

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             1178888744214888722778987153
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +.|+.|++.|.=|.+....|..||..|=
T Consensus        49 ~~C~~C~~~f~~~~~~~~~C~~C~~~~C   76 (124)
T d1zbdb_          49 NRCILCGEQLGMLGSASVVCEDCKKNVC   76 (124)
T ss_dssp             SBCSSSCCBCSTTSCCEEECTTTCCEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8583459733478999886724786011


No 25 
>d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=82.64  E-value=0.35  Score=25.34  Aligned_cols=28  Identities=14%  Similarity=0.203  Sum_probs=20.9

Q ss_pred             CCCCCCCCCEEEECCCC---CCCCCCCCCEE
Q ss_conf             31178888744214888---72277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQ---VIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~   36 (129)
                      -|+|++||+-|-...+.   +=+|=.||.+.
T Consensus         2 Rr~C~~CG~~Yh~~~~pPk~~g~CD~cG~~L   32 (35)
T d1zina2           2 RRICRNCGATYHLIFHPPAKPGVCDKCGGEL   32 (35)
T ss_dssp             EEEETTTCCEEETTTBCCSSTTBCTTTCCBE
T ss_pred             CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             6588676752126567988788477989995


No 26 
>d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=82.45  E-value=0.36  Score=25.27  Aligned_cols=28  Identities=7%  Similarity=-0.009  Sum_probs=21.1

Q ss_pred             CCCCCCCCEEEEC-----CCCCCCCCCCCC-EEC
Q ss_conf             1178888744214-----888722778987-153
Q gi|254780459|r   10 RTCPDTGKRFYDL-----NKQVIVSPYTQN-SWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDl-----nk~PiiCP~CG~-e~~   37 (129)
                      -.|+.||..+|-.     -+.|..||.||. .|.
T Consensus       127 ~~C~~C~~~~~~~~~~~~~~~p~~C~~C~~~~f~  160 (239)
T d1ltla_         127 FECRGCMRHHAVTQSTNMITEPSLCSECGGRSFR  160 (239)
T ss_dssp             EEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEE
T ss_pred             EECCCCCCEEEEEECCCEECCCCCCCCCCCCCCE
T ss_conf             9988888569997169715377557777996518


No 27 
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=81.74  E-value=0.38  Score=25.14  Aligned_cols=32  Identities=6%  Similarity=-0.088  Sum_probs=21.6

Q ss_pred             CCCCCCCCCEEEEC----CCCCCCCCCCCCEECHHH
Q ss_conf             31178888744214----888722778987153233
Q gi|254780459|r    9 KRTCPDTGKRFYDL----NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~KFYDl----nk~PiiCP~CG~e~~~~~   40 (129)
                      +-.|+.|+.+|.=-    -.....||.||...-|..
T Consensus       121 ~~~C~~c~~~~~~~~~~~~~~~p~C~~Cgg~lrP~V  156 (249)
T d1m2ka_         121 VVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGV  156 (249)
T ss_dssp             EEEESSSSCEEECSSCCCSSSCCBCSSSSSBEEEEE
T ss_pred             HEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCE
T ss_conf             301034798200011233789997645899711244


No 28 
>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}
Probab=81.56  E-value=0.28  Score=25.93  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=22.0

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCE
Q ss_conf             78311788887442148887227789871
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      .++-+|.+||--+.- ..-|-+||.||+-
T Consensus         6 ~~~W~C~~CGyi~~g-~~aP~~CPvC~~p   33 (44)
T d1lkoa2           6 ATKWRCRNCGYVHEG-TGAPELCPACAHP   33 (44)
T ss_dssp             EEEEEETTTCCEEEE-EECCSBCTTTCCB
T ss_pred             CEEEECCCCCCEEEC-CCCCCCCCCCCCC
T ss_conf             748883889958777-8798768799885


No 29 
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=81.18  E-value=0.46  Score=24.64  Aligned_cols=30  Identities=17%  Similarity=0.219  Sum_probs=24.3

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             7831178888744214888722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      |..-.|..|+++|= |-+..-.|..||..|=
T Consensus         7 ~~~s~C~~C~~~Fs-~~~rrhhCr~CG~vfC   36 (88)
T d1wfka_           7 GMESRCYGCAVKFT-LFKKEYGCKNCGRAFC   36 (88)
T ss_dssp             CCCSBCTTTCCBCC-SSSCEEECSSSCCEEE
T ss_pred             CCCCCCCCCCCHHC-CCCCCCCCCCCCHHHC
T ss_conf             56686935195013-5433533411195458


No 30 
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Probab=80.46  E-value=0.34  Score=25.44  Aligned_cols=25  Identities=12%  Similarity=0.157  Sum_probs=15.3

Q ss_pred             CCCCCCCE-EEECCCCCCCCCCCCCE
Q ss_conf             17888874-42148887227789871
Q gi|254780459|r   11 TCPDTGKR-FYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        11 ~C~~Cg~K-FYDlnk~PiiCP~CG~e   35 (129)
                      +|++||.+ -|-..+.-=.||.||..
T Consensus       517 ~C~~Cg~~~~~~~~~~~~~CP~CGs~  542 (561)
T d1hk8a_         517 KCFTCGSTHEMTPTENGFVCSICGET  542 (561)
T ss_dssp             EETTTCCCSCCEECSSSEECSSSCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             47788875864357778529389899


No 31 
>d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]}
Probab=79.90  E-value=0.34  Score=25.45  Aligned_cols=22  Identities=14%  Similarity=0.209  Sum_probs=16.5

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             31178888744214888722778987
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      =.+||+||.    +.+.=-+||+||.
T Consensus        29 l~~C~~CG~----~~lpHrvC~~CG~   50 (58)
T d2zjrz1          29 LTECPQCHG----KKLSHHICPNCGY   50 (58)
T ss_dssp             CEECTTTCC----EECTTBCCTTTCB
T ss_pred             EEECCCCCC----CCCCEEECCCCCC
T ss_conf             147899999----7566056798883


No 32 
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.56  E-value=0.5  Score=24.41  Aligned_cols=27  Identities=19%  Similarity=0.203  Sum_probs=22.4

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             1178888744214888722778987153
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ..|+.|+++|.=|+|. -.|-.||..|=
T Consensus         9 ~~C~~C~~~F~~~~rr-HHCR~CG~v~C   35 (64)
T d1joca1           9 QNCMACGKGFSVTVRR-HHCRQCGNIFC   35 (64)
T ss_dssp             CBCTTTCCBCCSSSCC-EECTTTCCEEC
T ss_pred             CCCCCCCCCCCCCCCC-CCHHHHCCEEC
T ss_conf             9683759743687655-05054198415


No 33 
>d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]}
Probab=79.49  E-value=0.41  Score=24.92  Aligned_cols=28  Identities=11%  Similarity=0.031  Sum_probs=20.5

Q ss_pred             CCCCCCCCCEEEECCCC---CCCCCCCCCEE
Q ss_conf             31178888744214888---72277898715
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQ---VIVSPYTQNSW   36 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~   36 (129)
                      -|+||+||.-|=...+-   +=+|=.||.+.
T Consensus         2 Rr~c~~cG~~Yh~~~~PPk~~g~CD~cg~~L   32 (35)
T d1e4va2           2 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEEL   32 (35)
T ss_dssp             EEEETTTTEEEETTTBCCSSTTBCTTTCCBC
T ss_pred             CCCCCCCCCHHHHCCCCCCCCCCCCCCCCEE
T ss_conf             6677686772320047644588126778972


No 34 
>d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=78.82  E-value=0.79  Score=23.19  Aligned_cols=29  Identities=14%  Similarity=0.244  Sum_probs=23.5

Q ss_pred             CCCCCCCCCCEEEECCC--CCCCCCCCCCEE
Q ss_conf             83117888874421488--872277898715
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK--QVIVSPYTQNSW   36 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk--~PiiCP~CG~e~   36 (129)
                      .|-.||.|+.-=-=|.+  +++.|..||+.+
T Consensus         6 ~~VkC~~C~n~~ivFsha~t~V~C~~Cg~~L   36 (58)
T d1qxfa_           6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV   36 (58)
T ss_dssp             EEEECTTTCCEEEEESSCSSCEECSSSCCEE
T ss_pred             EEEECCCCCCEEEEEECCCEEEECCCCCCEE
T ss_conf             8959999998678982375489814658788


No 35 
>d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=77.60  E-value=0.66  Score=23.67  Aligned_cols=32  Identities=16%  Similarity=0.096  Sum_probs=23.9

Q ss_pred             CCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCC
Q ss_conf             3117888874-421488872277898715323310123
Q gi|254780459|r    9 KRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPT   45 (129)
Q Consensus         9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~   45 (129)
                      +-+||.||.. -|     =--|-+||+.|.|..|+.++
T Consensus         2 ~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLinP~   34 (35)
T d1rqga3           2 IGTCPYCGAEDQK-----GDQCEVCGRPLTPEILINPR   34 (35)
T ss_dssp             CSBCSSSCCSCCC-----TTTCSSSCCCCCTTSSBSCB
T ss_pred             EEECCCCCCCCCC-----CCCHHHCCCCCCHHHHCCCC
T ss_conf             6779799897540-----76234567846888940788


No 36 
>d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]}
Probab=77.33  E-value=0.39  Score=25.06  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=24.5

Q ss_pred             CCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCC
Q ss_conf             3117888874-421488872277898715323310123
Q gi|254780459|r    9 KRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPT   45 (129)
Q Consensus         9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~   45 (129)
                      +-+||.||.. -|     =--|.+||+.|.|..|+.++
T Consensus         2 ~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLinP~   34 (35)
T d1pfva3           2 KGTCPKCKSPDQY-----GDNCEVCGATYSPTELIEPK   34 (35)
T ss_dssp             EEECTTTCCSSEE-----TTBCTTTCCBCCGGGSEEEE
T ss_pred             EEECCCCCCCCCC-----CCCHHHCCCCCCHHHHCCCC
T ss_conf             6679799796654-----65277708707899952889


No 37 
>d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=76.93  E-value=0.6  Score=23.92  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH
Q ss_conf             7831178888744214888---7227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~   38 (129)
                      -.|++||.||..  .+.|.   -=.|-+||..|.-
T Consensus        25 ~~ky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG   57 (73)
T d1jj2y_          25 KKKHKCPVCGFK--KLKRAGTGIWMCGHCGYKIAG   57 (73)
T ss_dssp             HSCBCCSSSCCS--CEEEEETTEEEETTTCCEEEC
T ss_pred             CCCCCCCCCCCC--CEEEEEEEEEECCCCCCEEEC
T ss_conf             378649888988--228899888887999988867


No 38 
>d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.69  E-value=0.58  Score=24.01  Aligned_cols=28  Identities=18%  Similarity=0.464  Sum_probs=23.2

Q ss_pred             CCCCC--CCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             11788--88744214888722778987153
Q gi|254780459|r   10 RTCPD--TGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~--Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      ..||+  |.+|-.+....--.||+||..++
T Consensus        41 ~aCp~~~C~KKv~~~~~g~~~C~kC~~~~~   70 (178)
T d1l1oc_          41 QACPTQDCNKKVIDQQNGLYRCEKCDTEFP   70 (178)
T ss_dssp             EBCCSTTCCCBCEEETTTEEEETTTTEEES
T ss_pred             CCCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf             478973257844107897288888888688


No 39 
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=73.62  E-value=0.55  Score=24.15  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=26.3

Q ss_pred             HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             22278311788887442148887227789871532
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      .+.+..|.|..|.+.|.+  +.--.||+|+..|=.
T Consensus        10 ~~~~~~~~C~gC~~~l~~--~~~y~C~~C~~~FC~   42 (59)
T d1z60a1          10 EEYNGERFCYGCQGELKD--QHVYVCAVCQNVFCV   42 (59)
T ss_dssp             HHHCSCCEETTTTEECTT--SEEECCTTTTCCBCH
T ss_pred             HHCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCC
T ss_conf             233999872587880799--860799678985136


No 40 
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=72.82  E-value=0.59  Score=23.95  Aligned_cols=10  Identities=40%  Similarity=1.155  Sum_probs=5.2

Q ss_pred             CCCCCCCEEE
Q ss_conf             1788887442
Q gi|254780459|r   11 TCPDTGKRFY   20 (129)
Q Consensus        11 ~C~~Cg~KFY   20 (129)
                      .||+||++..
T Consensus         5 ~CP~C~s~l~   14 (181)
T d1dgsa1           5 ACPECGHRLV   14 (181)
T ss_dssp             BCTTTCCBCE
T ss_pred             CCCCCCCEEE
T ss_conf             7999989526


No 41 
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=70.79  E-value=0.75  Score=23.32  Aligned_cols=30  Identities=20%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             1788887442148887227789871532331012
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      +|+=|+.-|    ++|++.|+||..|.-.-+.+-
T Consensus         2 ~C~Ic~~~~----~~Pv~~~~cGh~fc~~cI~~~   31 (56)
T d2baya1           2 LCAISGKVP----RRPVLSPKSRTIFEKSLLEQY   31 (56)
T ss_dssp             CCTTTCSCC----SSEEEETTTTEEEEHHHHHHH
T ss_pred             CCCCCCCHH----HHCCCCCCCCCCCCHHHHHHH
T ss_conf             993678568----865745789984559999998


No 42 
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=70.58  E-value=1.5  Score=21.51  Aligned_cols=30  Identities=7%  Similarity=0.075  Sum_probs=23.8

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEE
Q ss_conf             783117888874421488872277898715
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSW   36 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~   36 (129)
                      ..+=+|-.||+++-=--++||-|-.||.-+
T Consensus         2 ~v~YiCgeCg~~~~l~~~d~irCreCG~RI   31 (46)
T d1twfl_           2 TLKYICAECSSKLSLSRTDAVRCKDCGHRI   31 (46)
T ss_dssp             CCCEECSSSCCEECCCTTSTTCCSSSCCCC
T ss_pred             CEEEECCCCCCCEEECCCCCEEECCCCCEE
T ss_conf             527985468981076899968811188587


No 43 
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=69.82  E-value=1.4  Score=21.60  Aligned_cols=31  Identities=13%  Similarity=0.040  Sum_probs=23.4

Q ss_pred             HCCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             27831178888744214888722778987153
Q gi|254780459|r    6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      |=---.|+.|+++|-=| +..-.|-.||..|=
T Consensus         2 W~~~~~C~~C~~~F~~~-~rkhhCr~CG~~fC   32 (67)
T d1vfya_           2 WIDSDACMICSKKFSLL-NRKHHCRSCGGVFC   32 (67)
T ss_dssp             CCCCSBCTTTCCBCBTT-BCCEECTTTCCEEC
T ss_pred             CCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEC
T ss_conf             97670011589712686-42241455797764


No 44 
>d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=69.56  E-value=1.1  Score=22.41  Aligned_cols=31  Identities=19%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             CCCCCCCCCEEEE------CC----CCCCCCCCCCCEECHH
Q ss_conf             3117888874421------48----8872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYD------LN----KQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYD------ln----k~PiiCP~CG~e~~~~   39 (129)
                      +-.|.+|+.+|.-      +.    +....||.||...-|.
T Consensus       136 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~c~~Cgg~lrP~  176 (289)
T d1q1aa_         136 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA  176 (289)
T ss_dssp             EEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             35664777668989999886524555567653224410572


No 45 
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.20  E-value=1.2  Score=22.11  Aligned_cols=30  Identities=3%  Similarity=0.049  Sum_probs=22.1

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             1178888744214888722778987153233101
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      -+||-|...|    +.|++++.||+.|-..=+.+
T Consensus        23 l~C~IC~~~~----~~pv~~~~CgH~fC~~Ci~~   52 (97)
T d1jm7b_          23 LRCSRCTNIL----REPVCLGGCEHIFCSNCVSD   52 (97)
T ss_dssp             TSCSSSCSCC----SSCBCCCSSSCCBCTTTGGG
T ss_pred             CCCCCCCCHH----HCCCEECCCCCCHHHHHHHH
T ss_conf             8992587221----12746588999302999999


No 46 
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=69.13  E-value=1.2  Score=22.15  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=16.7

Q ss_pred             CCCCCCCCCCEEEECC--------CCC--CCCCCCCCE
Q ss_conf             8311788887442148--------887--227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLN--------KQV--IVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDln--------k~P--iiCP~CG~e   35 (129)
                      .|-+|..||-- ||=.        --|  =+||-||+.
T Consensus         2 ~~y~C~~Cgyi-Yd~~~Gdgt~Fe~LP~dw~CP~C~a~   38 (45)
T d6rxna_           2 QKYVCNVCGYE-YDPAEHDNVPFDQLPDDWCCPVCGVS   38 (45)
T ss_dssp             CCEEETTTCCE-ECGGGGTTCCGGGSCTTCBCTTTCCB
T ss_pred             CCEEECCCCEE-ECCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             87590899808-78644799897788987789599892


No 47 
>d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=68.63  E-value=0.97  Score=22.65  Aligned_cols=31  Identities=16%  Similarity=0.131  Sum_probs=21.8

Q ss_pred             CCCCCCCCCEE-EEC--------CCCCCCCCCCCCEECHH
Q ss_conf             31178888744-214--------88872277898715323
Q gi|254780459|r    9 KRTCPDTGKRF-YDL--------NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KF-YDl--------nk~PiiCP~CG~e~~~~   39 (129)
                      +-.|..|+.++ |++        ...+..||.||...-|.
T Consensus       159 ~~~C~~c~~~~~~~~~~~~~~~~~~~~p~C~~CgG~lRP~  198 (323)
T d1j8fa_         159 TSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPD  198 (323)
T ss_dssp             EEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBEEEE
T ss_pred             CCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             0101033554014455666553135566665679835887


No 48 
>d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]}
Probab=65.43  E-value=1.5  Score=21.50  Aligned_cols=31  Identities=13%  Similarity=0.153  Sum_probs=21.3

Q ss_pred             CCCCCCCCCEEE------EC-CCCCCCCCCCCCEECHH
Q ss_conf             311788887442------14-88872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFY------DL-NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFY------Dl-nk~PiiCP~CG~e~~~~   39 (129)
                      +-.|..|+++|.      .+ ......||.||...-|.
T Consensus       121 ~~~C~~c~~~~~~~~~~~~~~~~~~p~c~~Cgg~lrP~  158 (245)
T d1yc5a1         121 EYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPN  158 (245)
T ss_dssp             EEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             66650457776678876532014578742358714575


No 49 
>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]}
Probab=65.39  E-value=1  Score=22.55  Aligned_cols=31  Identities=10%  Similarity=-0.010  Sum_probs=20.7

Q ss_pred             CCCCCCCCCEEEEC----CCCCCCCCCCCCEECHH
Q ss_conf             31178888744214----88872277898715323
Q gi|254780459|r    9 KRTCPDTGKRFYDL----NKQVIVSPYTQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYDl----nk~PiiCP~CG~e~~~~   39 (129)
                      +-.|++|+.+|.--    ......||.||...-|.
T Consensus       113 ~~~C~~C~~~~~~~~~~~~~~~~~c~~Cgg~lrP~  147 (235)
T d1s5pa_         113 KVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH  147 (235)
T ss_dssp             EEEETTTCCEEECCSCCCSSCCC-------CEEEE
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             79979999734433333556666664446412561


No 50 
>d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=65.22  E-value=0.88  Score=22.89  Aligned_cols=30  Identities=17%  Similarity=0.511  Sum_probs=22.7

Q ss_pred             CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH
Q ss_conf             7831178888744214888---7227789871532
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL   38 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~   38 (129)
                      -.|++||.||..  .+.|.   -=.|-+||..|.-
T Consensus        25 ~~ky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG   57 (73)
T d1vqoz1          25 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFTG   57 (73)
T ss_dssp             HSCBCCSSSSCS--CEEEEETTEEEETTTCCEEEC
T ss_pred             HCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC
T ss_conf             279619887996--038988888888999998737


No 51 
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=65.19  E-value=1.3  Score=21.88  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=15.6

Q ss_pred             HCCCCCCCCCCCEE--EEC-------CCCCCCCCCCCCEEC
Q ss_conf             27831178888744--214-------888722778987153
Q gi|254780459|r    6 LGTKRTCPDTGKRF--YDL-------NKQVIVSPYTQNSWP   37 (129)
Q Consensus         6 lG~KR~C~~Cg~KF--YDl-------nk~PiiCP~CG~e~~   37 (129)
                      .+.+..||-||..=  =-+       ++.=..|.-||++|.
T Consensus       161 ~~~~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~  201 (290)
T d2fiya1         161 TESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH  201 (290)
T ss_dssp             CTTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE
T ss_pred             CCCCCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCC
T ss_conf             66699699999802114032367778856887899988542


No 52 
>d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]}
Probab=65.04  E-value=1.3  Score=21.83  Aligned_cols=22  Identities=9%  Similarity=0.215  Sum_probs=17.1

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             831178888744214888722778987
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      ..|.|.+|+.-+=+   +  .||.||.
T Consensus         8 ~~rAC~~C~~i~~~---~--~CpnC~s   29 (67)
T d1ryqa_           8 SEKACRHCHYITSE---D--RCPVCGS   29 (67)
T ss_dssp             -CEEETTTCBEESS---S--SCTTTCC
T ss_pred             CCHHHHHCCCCCCC---C--CCCCCCC
T ss_conf             17467618875688---8--7979869


No 53 
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.87  E-value=1.7  Score=21.22  Aligned_cols=32  Identities=9%  Similarity=-0.015  Sum_probs=24.8

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC
Q ss_conf             311788887442148887227789871532331012
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~   44 (129)
                      .-+||=|+.-|    ++|++.|.||..|.-..+.+-
T Consensus        22 ~f~CPI~~~lm----~dPV~~~~~~~ty~r~~I~~~   53 (98)
T d1wgma_          22 EFLDPIMSTLM----CDPVVLPSSRVTVDRSTIARH   53 (98)
T ss_dssp             TTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHH
T ss_pred             HHCCCCCHHHH----HHHHHCCCCCCHHHHHHHHHH
T ss_conf             74886734688----777762355320149999999


No 54 
>d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=64.86  E-value=1.6  Score=21.39  Aligned_cols=31  Identities=10%  Similarity=0.036  Sum_probs=19.5

Q ss_pred             CCCCCCCCCEEEECCC------------------------CCCCCCC--CCCEECHH
Q ss_conf             3117888874421488------------------------8722778--98715323
Q gi|254780459|r    9 KRTCPDTGKRFYDLNK------------------------QVIVSPY--TQNSWPLA   39 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk------------------------~PiiCP~--CG~e~~~~   39 (129)
                      +-.|+.||.+|+....                        ....||.  ||..+-|.
T Consensus       128 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~~~~Cgg~lrP~  184 (267)
T d2b4ya1         128 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPH  184 (267)
T ss_dssp             EEEETTTCCEEECCCSSSSGGGTTCCCCSTTCCCCCCCGGGSCBCCSTTTCCBEEEE
T ss_pred             EEEECCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCCHHHCCCCCCCCCCCEECCC
T ss_conf             899799998621111310366614578886424431314334543335789873675


No 55 
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.76  E-value=1.7  Score=21.19  Aligned_cols=27  Identities=11%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             1788887442148887227789871532
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      .|..|+++|-=|+|. -.|-.||..|=-
T Consensus         2 ~C~~C~~~F~~~~rk-hhCr~CG~~fC~   28 (51)
T d1y02a2           2 SCKSCGAHFANTARK-QTCLDCKKNFCM   28 (51)
T ss_dssp             CCTTTCCCCSSGGGC-EECTTTCCEECG
T ss_pred             CCCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf             761428800697647-446669865172


No 56 
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=61.36  E-value=1.6  Score=21.34  Aligned_cols=24  Identities=13%  Similarity=0.162  Sum_probs=20.1

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             31178888744214888722778987
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      |-.|..|  ||||=.|.+-.||+||-
T Consensus         2 ~YfC~iC--~l~dddk~~yHC~~Cgi   25 (56)
T d2dkta2           2 EYYCSIC--HLFDKDKRQYHCESCGI   25 (56)
T ss_dssp             SEECSSS--CCEECSSSEEEETTTTE
T ss_pred             CEECCCC--CCCCCCCCCCCCCCCCC
T ss_conf             6578737--75468887665999980


No 57 
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.10  E-value=2.7  Score=19.96  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             CCCCCCCEEEE-----------CCCCCCCCCCCCCEECHHHH
Q ss_conf             17888874421-----------48887227789871532331
Q gi|254780459|r   11 TCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        11 ~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~~~   41 (129)
                      .| .||..|--           .+..|-.|+.||..|.-...
T Consensus         5 ~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~   45 (53)
T d2csha1           5 PC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH   45 (53)
T ss_dssp             EC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHH
T ss_pred             CC-CCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCEECCHHH
T ss_conf             79-999817978786998633014658707975989257889


No 58 
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=58.81  E-value=2.1  Score=20.57  Aligned_cols=23  Identities=22%  Similarity=0.485  Sum_probs=16.6

Q ss_pred             CCCCCCCCC--------------------CEEEECCCCCCCCCCCCC
Q ss_conf             831178888--------------------744214888722778987
Q gi|254780459|r    8 TKRTCPDTG--------------------KRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         8 ~KR~C~~Cg--------------------~KFYDlnk~PiiCP~CG~   34 (129)
                      .+|.||+|.                    .+||    .|.=||+|+.
T Consensus       294 v~~lCp~Ck~~~~~~~~~~~~~~~~~~~~~~~~----~~~GC~~C~~  336 (401)
T d1p9ra_         294 VRTLCPDCKEPYEADKEQRKLFDSKKKEPLILY----RATGCPKCNH  336 (401)
T ss_dssp             EEEECTTTCEEEECCHHHHTTC-----CCCEEE----ECCCCSSSCS
T ss_pred             HHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEE----ECCCCCCCCC
T ss_conf             342188867688999999962354545663798----0899630379


No 59 
>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.33  E-value=2.5  Score=20.10  Aligned_cols=24  Identities=21%  Similarity=0.495  Sum_probs=16.0

Q ss_pred             CCCCCCCCEEEE---CCC-CCCCCCCCC
Q ss_conf             117888874421---488-872277898
Q gi|254780459|r   10 RTCPDTGKRFYD---LNK-QVIVSPYTQ   33 (129)
Q Consensus        10 R~C~~Cg~KFYD---lnk-~PiiCP~CG   33 (129)
                      -+|..||.+|-|   ||. .-.+|-+|-
T Consensus         6 ~~C~eCg~~F~DSYL~~~Fd~~vCD~CR   33 (36)
T d1d4ua2           6 VICEECGKEFMDSYLMDHFDLPTCDDCR   33 (36)
T ss_dssp             EECTTTCCEESCSSSTTTTSCCCCTTTC
T ss_pred             HHHHHHCCHHHHHHHHHCCCCHHCCCCC
T ss_conf             8998857377899999738950114354


No 60 
>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}
Probab=57.99  E-value=3  Score=19.62  Aligned_cols=27  Identities=22%  Similarity=0.303  Sum_probs=17.2

Q ss_pred             CCCCCCCCCCEEEECCC-----------------CCCCCCCCCCE
Q ss_conf             83117888874421488-----------------87227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK-----------------QVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk-----------------~PiiCP~CG~e   35 (129)
                      +|-+|..|| --||-.+                 .-=+||-||+.
T Consensus         3 kky~C~~Cg-yiYdp~~Gd~~~gi~pGT~F~~LP~dw~CP~C~a~   46 (56)
T d1s24a_           3 LKWICITCG-HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT   46 (56)
T ss_dssp             CEEEETTTT-EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred             CCEECCCCC-CEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             327889999-38885547845686989975568987799499895


No 61 
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.98  E-value=1.8  Score=20.97  Aligned_cols=28  Identities=11%  Similarity=0.184  Sum_probs=20.6

Q ss_pred             CCCCCCCCEEEEC-CCCCCCC--CCCCCEEC
Q ss_conf             1178888744214-8887227--78987153
Q gi|254780459|r   10 RTCPDTGKRFYDL-NKQVIVS--PYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDl-nk~PiiC--P~CG~e~~   37 (129)
                      |.||+|++.+--- +-.=++|  +.||++|=
T Consensus         7 K~CP~C~~~ieK~~GCnhM~C~~~~C~~~fC   37 (60)
T d1wd2a_           7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFC   37 (60)
T ss_dssp             CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCS
T ss_pred             CCCCCCCCEEEECCCCCCEEECCCCCCCEEE
T ss_conf             5987999968878898876969989999387


No 62 
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}
Probab=56.08  E-value=1.8  Score=20.96  Aligned_cols=17  Identities=12%  Similarity=-0.001  Sum_probs=13.2

Q ss_pred             CCCCCCCCCCCCCEECH
Q ss_conf             48887227789871532
Q gi|254780459|r   22 LNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        22 lnk~PiiCP~CG~e~~~   38 (129)
                      +.-.|.+||-||+.+--
T Consensus        20 ~s~qpatcpic~avirq   36 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQ   36 (54)
T ss_dssp             TTSCCEECTTTCCEESS
T ss_pred             CCCCCCCCCHHHHHHHH
T ss_conf             23599777048999998


No 63 
>d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=55.98  E-value=2.9  Score=19.70  Aligned_cols=22  Identities=23%  Similarity=0.294  Sum_probs=18.6

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             178888744214888722778987
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .|..|-+-..|+.|  .-||+||.
T Consensus        10 rC~aCf~~t~~~~k--~FCpkCGn   31 (66)
T d2cona1          10 RCHGCFKTTSDMNR--VFCGHCGN   31 (66)
T ss_dssp             ECSSSCCEESCSSC--CSCSSSCC
T ss_pred             EEEECCCCCCCCCC--CCCCCCCC
T ss_conf             74255769688666--41753698


No 64 
>d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=55.76  E-value=2.7  Score=19.92  Aligned_cols=31  Identities=6%  Similarity=-0.120  Sum_probs=22.1

Q ss_pred             CCCCCCCCEEEE--------CCCCCCCCCCCCCEECHHH
Q ss_conf             117888874421--------4888722778987153233
Q gi|254780459|r   10 RTCPDTGKRFYD--------LNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KFYD--------lnk~PiiCP~CG~e~~~~~   40 (129)
                      -.|..|+.+|+-        ....+..||.||..+-|..
T Consensus       124 ~~C~~~~~~~~~~~~~~~~~~~~~~~~c~~cgg~lrP~v  162 (252)
T d1ma3a_         124 LDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRV  162 (252)
T ss_dssp             EEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEEEE
T ss_pred             EEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf             578034655431024443303777777635556688847


No 65 
>d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]}
Probab=53.58  E-value=2.6  Score=20.07  Aligned_cols=19  Identities=5%  Similarity=0.127  Sum_probs=12.1

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             178888744214888722778987
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .||+||.-    .+.=-+|| ||.
T Consensus        29 ~c~~CG~~----~lpH~vC~-cG~   47 (56)
T d2qam01          29 VDKTSGEK----HLRHHITA-DGY   47 (56)
T ss_dssp             ECSSSCCE----ECTTSCCT-TSC
T ss_pred             ECCCCCCC----CCCCEECC-CCC
T ss_conf             78899997----05727889-977


No 66 
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.81  E-value=3.1  Score=19.58  Aligned_cols=29  Identities=14%  Similarity=0.085  Sum_probs=19.4

Q ss_pred             CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH
Q ss_conf             3117888874421488872277898715323310
Q gi|254780459|r    9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus         9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~   42 (129)
                      .-.|+-|...|    +.|++.| ||+.|=..=+.
T Consensus         6 ~l~C~IC~~~~----~~p~~lp-CgH~fC~~Ci~   34 (56)
T d1bora_           6 FLRCQQCQAEA----KCPKLLP-CLHTLCSGCLE   34 (56)
T ss_dssp             CSSCSSSCSSC----BCCSCST-TSCCSBTTTCS
T ss_pred             CCCCCCCCCCC----CCCEEEC-CCCHHHHHHHH
T ss_conf             88984029415----8978901-77778599887


No 67 
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=49.77  E-value=4.3  Score=18.70  Aligned_cols=26  Identities=27%  Similarity=0.423  Sum_probs=16.0

Q ss_pred             CCCCCCCC-----------------CEEEECCCCCCCCCCCCCE
Q ss_conf             31178888-----------------7442148887227789871
Q gi|254780459|r    9 KRTCPDTG-----------------KRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg-----------------~KFYDlnk~PiiCP~CG~e   35 (129)
                      |-+|+.||                 |.|-||- .-=+||-||+.
T Consensus         2 ky~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP-~dw~CP~C~a~   44 (53)
T d1brfa_           2 KWVCKICGYIYDEDAGDPDNGISPGTKFEELP-DDWVCPICGAP   44 (53)
T ss_dssp             EEEETTTCCEEETTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred             CEECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC
T ss_conf             24879999188865578456879999978989-98889299894


No 68 
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.41  E-value=4.3  Score=18.66  Aligned_cols=26  Identities=15%  Similarity=0.063  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             831178888744214888722778987153
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .|..|..|.+|.   +-.++.| .||..|=
T Consensus        24 k~~RC~~C~KKl---~l~~~~C-rCg~~FC   49 (74)
T d1wfla_          24 KKNRCFMCRKKV---GLTGFDC-RCGNLFC   49 (74)
T ss_dssp             CTTBCSSSCCBC---GGGCEEC-TTSCEEC
T ss_pred             CCCCCHHHCCCC---CCEEEEC-CCCCEEH
T ss_conf             788273238863---4230570-6889721


No 69 
>d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.86  E-value=2.5  Score=20.13  Aligned_cols=32  Identities=28%  Similarity=0.477  Sum_probs=19.9

Q ss_pred             CCCCCCCCEEE----ECCCC--CCCCCCCCCE----ECHHHHH
Q ss_conf             11788887442----14888--7227789871----5323310
Q gi|254780459|r   10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNS----WPLAYFE   42 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e----~~~~~~~   42 (129)
                      +-|| ||-+|-    +|..-  -+.||+|.--    |.++.+.
T Consensus        23 ypCr-CGd~F~it~~dLe~ge~v~~C~sCSL~IrVif~~ed~~   64 (82)
T d1ywsa1          23 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKEDLA   64 (82)
T ss_dssp             ECCS-SSSCEEEEHHHHHTTCCEEEETTTTEEEEEECCHHHHH
T ss_pred             ECCC-CCCEEEECHHHHHCCCEEEECCCCCEEEEEEECHHHHH
T ss_conf             6135-69837986999858995996899860899995525744


No 70 
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=47.71  E-value=3.4  Score=19.28  Aligned_cols=36  Identities=17%  Similarity=0.313  Sum_probs=26.2

Q ss_pred             CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             52227831178888744214888722778987153233101
Q gi|254780459|r    3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus         3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      +|++=---+||=|..-|    ++|++.| ||+.|--.-+.+
T Consensus         2 ~peiP~~l~CpIc~~~m----~dPV~~~-cgh~fc~~ci~~   37 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELM----KDPVIVS-TGQTYERSSIQK   37 (78)
T ss_dssp             CCCCSSSSSCTTTSCCC----SSEEEET-TTEEEEHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHH----HCCEECC-CCCCCHHHHHHH
T ss_conf             79899627991718121----0833726-777433999999


No 71 
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.06  E-value=4.2  Score=18.73  Aligned_cols=29  Identities=14%  Similarity=0.247  Sum_probs=20.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             1178888744214888722778987153233101
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      .+|+-|-    +..++|++-| ||+.|--.=+.+
T Consensus        24 ~~C~IC~----~~~~~~~~~~-CgH~fC~~Ci~~   52 (79)
T d1fbva4          24 QLCKICA----ENDKDVKIEP-CGHLMCTSCLTS   52 (79)
T ss_dssp             TBCTTTS----SSBCCEECSS-SCCEECHHHHHH
T ss_pred             CCCCCCC----CCCCCEEEEC-CCCEEEHHHHHH
T ss_conf             9993589----7689969958-999352999999


No 72 
>d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]}
Probab=45.90  E-value=8.1  Score=17.01  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=22.1

Q ss_pred             CCCCCCCCCCE------EEECC-CCCCCCCCCCCEECHHH
Q ss_conf             83117888874------42148-88722778987153233
Q gi|254780459|r    8 TKRTCPDTGKR------FYDLN-KQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         8 ~KR~C~~Cg~K------FYDln-k~PiiCP~CG~e~~~~~   40 (129)
                      .--+||..|+-      ..+.+ +.-|+||+.|..|.+..
T Consensus        42 ~~~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~t   81 (122)
T d2jzaa1          42 ISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD   81 (122)
T ss_dssp             EBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT
T ss_pred             EECCCCCCCCCCCCCCEEEECCCCCEEECCCCCCEEECCC
T ss_conf             9668976356343232365036998897997897655133


No 73 
>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=45.49  E-value=3.1  Score=19.57  Aligned_cols=13  Identities=0%  Similarity=-0.151  Sum_probs=7.6

Q ss_pred             CCCCCCCCCEECH
Q ss_conf             7227789871532
Q gi|254780459|r   26 VIVSPYTQNSWPL   38 (129)
Q Consensus        26 PiiCP~CG~e~~~   38 (129)
                      -.+||-||--|.-
T Consensus         8 rf~c~pcgirfss   20 (36)
T d1y0jb1           8 RFMCLPCGIAFSS   20 (36)
T ss_dssp             CCBCTTTCCBCSC
T ss_pred             CEECCCCCEEECC
T ss_conf             1512665204347


No 74 
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=44.24  E-value=5.8  Score=17.87  Aligned_cols=26  Identities=31%  Similarity=0.437  Sum_probs=15.3

Q ss_pred             CCCCCCCC-----------------CEEEECCCCCCCCCCCCCE
Q ss_conf             31178888-----------------7442148887227789871
Q gi|254780459|r    9 KRTCPDTG-----------------KRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus         9 KR~C~~Cg-----------------~KFYDlnk~PiiCP~CG~e   35 (129)
                      |-+|..||                 |+|-+|- .-=+||-||+.
T Consensus         3 ky~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~   45 (53)
T d1iroa_           3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIP-DDWVCPLCGVG   45 (53)
T ss_dssp             CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB
T ss_pred             CEECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC
T ss_conf             75909999288855488456879899978889-98899399894


No 75 
>d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=43.89  E-value=5.6  Score=17.96  Aligned_cols=46  Identities=13%  Similarity=0.093  Sum_probs=29.7

Q ss_pred             HHCCCCCCCCCCCEE-E---ECCCC---------------CCCCCCCCCE--E----CHHHHHCCCCCCCC
Q ss_conf             227831178888744-2---14888---------------7227789871--5----32331012344344
Q gi|254780459|r    5 ELGTKRTCPDTGKRF-Y---DLNKQ---------------VIVSPYTQNS--W----PLAYFEAPTSPEKE   50 (129)
Q Consensus         5 elG~KR~C~~Cg~KF-Y---Dlnk~---------------PiiCP~CG~e--~----~~~~~~~~~~~~~~   50 (129)
                      .|=.|-.|+.||.+= +   -++..               --.|+.||+.  |    .|..++..|+||-+
T Consensus       115 ~wvn~p~C~~Cg~~t~~~~~~~g~~~p~~~e~~~~a~~vE~y~C~~C~~~~RFPRyn~p~~LL~tR~GRcg  185 (320)
T d1x3za1         115 KWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCG  185 (320)
T ss_dssp             EECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHH
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHH
T ss_conf             65589999867997622413466789891565478886999989999995146886888999761575348


No 76 
>d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]}
Probab=43.39  E-value=5.3  Score=18.11  Aligned_cols=33  Identities=12%  Similarity=0.081  Sum_probs=23.2

Q ss_pred             CCCCCCCCCCEE--EECCCCCCCCCCCCCEECHHH
Q ss_conf             831178888744--214888722778987153233
Q gi|254780459|r    8 TKRTCPDTGKRF--YDLNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus         8 ~KR~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~~   40 (129)
                      .-..||..|...  ..++..-|+||+.|..|++..
T Consensus        40 ~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~   74 (109)
T d1vm9a_          40 YQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGT   74 (109)
T ss_dssp             EESBCSSSSCBGGGSEEETTEEECTTTCCEEETTT
T ss_pred             EEEECCCCCCCCEEEECCCCEEECCCCCCEEECCC
T ss_conf             97668987753225763699997536783287799


No 77 
>d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.04  E-value=3.9  Score=18.92  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=16.9

Q ss_pred             CCCCCCCCEEE----ECCCC--CCCCCCCCCEE
Q ss_conf             11788887442----14888--72277898715
Q gi|254780459|r   10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW   36 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~   36 (129)
                      +-|| ||-+|-    +|..-  -+.||+|.--+
T Consensus        24 ypCp-CGd~F~it~~dLe~ge~V~~C~sCSL~i   55 (70)
T d1wgea1          24 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII   55 (70)
T ss_dssp             ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred             ECCC-CCCEEEECHHHHHCCCEEEECCCCCEEE
T ss_conf             6789-9995898799986899497299975189


No 78 
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.78  E-value=4.6  Score=18.49  Aligned_cols=20  Identities=0%  Similarity=-0.160  Sum_probs=14.6

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +-.|-.|+.||..|.-...+
T Consensus         5 gekP~~C~~C~k~F~~~~~L   24 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTM   24 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98797689776411420899


No 79 
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.65  E-value=4.6  Score=18.50  Aligned_cols=18  Identities=6%  Similarity=0.006  Sum_probs=13.6

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         9 ~ekpy~C~~CgK~F~~~s   26 (38)
T d2cota2           9 ERRRYKCDECGKSFSHSS   26 (38)
T ss_dssp             CSCSSBCSSSCCBCSCHH
T ss_pred             CCCCEECCCCCCEEECHH
T ss_conf             998972588786050778


No 80 
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=42.45  E-value=7.5  Score=17.22  Aligned_cols=27  Identities=11%  Similarity=0.076  Sum_probs=20.3

Q ss_pred             CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             7831178888744214888722778987153
Q gi|254780459|r    7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      -+|..|..|.+|.-   -.++.| .||..|=
T Consensus        13 ~k~~RC~~C~KKl~---l~~~~C-rCg~~FC   39 (64)
T d1wfha_          13 QRPNRCTVCRKRVG---LTGFMC-RCGTTFC   39 (64)
T ss_dssp             SSCCCCTTTCCCCC---TTCEEC-SSSCEEC
T ss_pred             CCCCCCHHHCCCCC---CEEEEC-CCCCEEH
T ss_conf             88980721087736---451462-6989701


No 81 
>d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=41.75  E-value=7.6  Score=17.18  Aligned_cols=45  Identities=9%  Similarity=-0.015  Sum_probs=29.2

Q ss_pred             HHCCCCCCCCCCCEEEECCCC--C--------------CCCCCCCCE--E----CHHHHHCCCCCCC
Q ss_conf             227831178888744214888--7--------------227789871--5----3233101234434
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQ--V--------------IVSPYTQNS--W----PLAYFEAPTSPEK   49 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~--P--------------iiCP~CG~e--~----~~~~~~~~~~~~~   49 (129)
                      .|=.+=-|+.||.+.--....  |              ..|..||..  |    .|..++..|+|+-
T Consensus        77 ~wv~~ppC~~C~~~~~~~~~~~~p~~~e~~~ga~rVE~~~C~~C~~~~rfpRy~~p~~ll~tr~G~C  143 (287)
T d2f4ma1          77 RWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRC  143 (287)
T ss_dssp             EECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESH
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCEECCCCCCHHHHHHHCCCCH
T ss_conf             5427898755588430046778988466546875489997688887214788799999998568358


No 82 
>d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=41.73  E-value=5.3  Score=18.12  Aligned_cols=18  Identities=39%  Similarity=0.641  Sum_probs=13.8

Q ss_pred             CCCCEEEECCCCCCCCCCCCCE
Q ss_conf             8887442148887227789871
Q gi|254780459|r   14 DTGKRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        14 ~Cg~KFYDlnk~PiiCP~CG~e   35 (129)
                      .=|.|-|-|.+   +|| ||..
T Consensus         8 ~~g~rvYTLkk---~~p-~G~~   25 (57)
T d2aqaa1           8 PDGKRIYTLKK---VTE-SGEI   25 (57)
T ss_dssp             SSSCEECCCCC---SSC-CCCC
T ss_pred             CCCCEEEEEEC---CCC-CCCC
T ss_conf             99978788402---388-9981


No 83 
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.60  E-value=3.8  Score=19.02  Aligned_cols=11  Identities=9%  Similarity=0.196  Sum_probs=7.4

Q ss_pred             CCCCCCCCCEE
Q ss_conf             72277898715
Q gi|254780459|r   26 VIVSPYTQNSW   36 (129)
Q Consensus        26 PiiCP~CG~e~   36 (129)
                      |..|++||.-|
T Consensus         1 pf~c~kcgkcy   11 (28)
T d2dlqa2           1 PFECPKCGKCY   11 (28)
T ss_dssp             SCBCTTTCCBC
T ss_pred             CCCCCCCHHHH
T ss_conf             97656350055


No 84 
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=40.50  E-value=4.4  Score=18.60  Aligned_cols=17  Identities=6%  Similarity=0.061  Sum_probs=12.2

Q ss_pred             CCCCCCCCCCEECHHHH
Q ss_conf             87227789871532331
Q gi|254780459|r   25 QVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~~   41 (129)
                      .|-.|+.||..|.-..-
T Consensus         1 kp~~C~~C~k~F~~~~~   17 (29)
T d2adra1           1 RSFVCEVCTRAFARQEH   17 (29)
T ss_dssp             CCBCCTTTCCCBSCHHH
T ss_pred             CCCCCCCCCCCCCCCHH
T ss_conf             96799899899887047


No 85 
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.89  E-value=7  Score=17.39  Aligned_cols=29  Identities=3%  Similarity=-0.082  Sum_probs=19.9

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             1178888744214888722778987153233101
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      -+||=|..-|    ++|++- .||+.|.-.-+.+
T Consensus         8 l~CpIc~~l~----~dPv~~-~cGhtfc~~ci~~   36 (80)
T d2c2la2           8 LCGKISFELM----REPCIT-PSGITYDRKDIEE   36 (80)
T ss_dssp             TBCTTTCSBC----SSEEEC-SSCCEEETTHHHH
T ss_pred             CCCCCCCCHH----HHHCCC-CCCCEECHHHHHH
T ss_conf             1185837323----403305-8868563889999


No 86 
>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}
Probab=38.68  E-value=7.9  Score=17.05  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=18.3

Q ss_pred             CCEEEECCCC-CCCCCCCCCEECH
Q ss_conf             8744214888-7227789871532
Q gi|254780459|r   16 GKRFYDLNKQ-VIVSPYTQNSWPL   38 (129)
Q Consensus        16 g~KFYDlnk~-PiiCP~CG~e~~~   38 (129)
                      -..++=|.|. |--||.||.-|.+
T Consensus        68 ~v~W~~l~~g~p~RC~eCG~~fkL   91 (98)
T d1v54f_          68 TVIWFWLHKGEAQRCPSCGTHYKL   91 (98)
T ss_dssp             CCEEEEEESSSCEECTTTCCEEEE
T ss_pred             EEEEEEEECCCCCCCCCCCCEEEE
T ss_conf             337889757998616778868998


No 87 
>d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.30  E-value=4.4  Score=18.62  Aligned_cols=10  Identities=30%  Similarity=0.607  Sum_probs=6.8

Q ss_pred             CCCCCCCCEE
Q ss_conf             2277898715
Q gi|254780459|r   27 IVSPYTQNSW   36 (129)
Q Consensus        27 iiCP~CG~e~   36 (129)
                      .+||||.--|
T Consensus         1 avcpycslrf   10 (26)
T d1wjpa2           1 AVCPYCSLRF   10 (26)
T ss_dssp             BCCTTTCCCB
T ss_pred             CCCCCCEEEE
T ss_conf             9787502243


No 88 
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.67  E-value=6.4  Score=17.64  Aligned_cols=20  Identities=10%  Similarity=-0.001  Sum_probs=14.4

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +-.|-.|+.||..|.-...+
T Consensus         4 GekPy~C~~C~k~F~~~~~L   23 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANC   23 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHH
T ss_conf             87460288788965686999


No 89 
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}
Probab=37.32  E-value=6.2  Score=17.72  Aligned_cols=25  Identities=16%  Similarity=0.401  Sum_probs=16.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             178888744214888722778987153
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      .||.|+..+- ....-++|+.|.. |+
T Consensus         3 ~CP~C~~~L~-~~~~~l~C~~~h~-fd   27 (268)
T d1p91a_           3 SCPLCHQPLS-REKNSYICPQRHQ-FD   27 (268)
T ss_dssp             BCTTTCCBCE-EETTEEECTTCCE-EE
T ss_pred             CCCCCCHHHH-CCCCEEECCCCCC-CC
T ss_conf             4989981220-5798698899985-06


No 90 
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.15  E-value=5.9  Score=17.84  Aligned_cols=15  Identities=0%  Similarity=0.009  Sum_probs=11.3

Q ss_pred             CCCCCCCCCCEECHH
Q ss_conf             872277898715323
Q gi|254780459|r   25 QVIVSPYTQNSWPLA   39 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~   39 (129)
                      .|-.|+.||..|.-.
T Consensus         2 KPy~C~~C~k~F~~~   16 (28)
T d1a1ia2           2 KPFQCRICMRNFSRS   16 (28)
T ss_dssp             CCEECTTTCCEESCH
T ss_pred             CCCCCCCCCCEECCC
T ss_conf             080099786974462


No 91 
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.90  E-value=8.2  Score=16.98  Aligned_cols=27  Identities=4%  Similarity=0.069  Sum_probs=18.8

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             11788887442148887227789871532331
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      -+||-|.-.|    +.|++-| ||+.|=-.=+
T Consensus        24 l~C~IC~~~~----~~pv~~~-CgH~FC~~Ci   50 (86)
T d1rmda2          24 ISCQICEHIL----ADPVETS-CKHLFCRICI   50 (86)
T ss_dssp             TBCTTTCSBC----SSEEECT-TSCEEEHHHH
T ss_pred             CCCCCCCCCH----HCCEECC-CCCHHHHHHH
T ss_conf             5995678444----1555267-8876319999


No 92 
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.57  E-value=10  Score=16.34  Aligned_cols=25  Identities=16%  Similarity=0.093  Sum_probs=18.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             1178888744214888722778987153
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +.|..|.+|--=+  .++.| .||..|=
T Consensus        26 ~RC~~C~KKl~l~--~~~~C-rCg~~FC   50 (85)
T d1wffa_          26 KHCFLCGKKTGLA--TSFEC-RCGNNFC   50 (85)
T ss_dssp             CBCSSSCCBCSSS--SCEEC-TTCCEEC
T ss_pred             CCCHHCCCEECCC--CCEEC-CCCCEEH
T ss_conf             8374407963688--57265-8989801


No 93 
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.08  E-value=7.1  Score=17.36  Aligned_cols=18  Identities=0%  Similarity=-0.103  Sum_probs=13.1

Q ss_pred             CCCCCCCCCCCCEECHHH
Q ss_conf             888722778987153233
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~   40 (129)
                      +..|-.|+.||..|.-..
T Consensus         4 gekpy~C~~Cgk~F~~~~   21 (33)
T d1x6ea1           4 GEKPYGCVECGKAFSRSS   21 (33)
T ss_dssp             TCCCEECSSSCCEESSHH
T ss_pred             CCCCEECCCCCCEECCHH
T ss_conf             998863899988728667


No 94 
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.87  E-value=6.9  Score=17.42  Aligned_cols=19  Identities=11%  Similarity=0.095  Sum_probs=13.5

Q ss_pred             CCCCCCCCCCCCEECHHHH
Q ss_conf             8887227789871532331
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~   41 (129)
                      +-.|-.|+.||..|.-...
T Consensus         8 geKPy~C~~C~k~F~~~~~   26 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDH   26 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHH
T ss_pred             CCCCEEECCCCCEECCHHH
T ss_conf             9668575999989248899


No 95 
>d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.78  E-value=4.5  Score=18.58  Aligned_cols=25  Identities=12%  Similarity=0.194  Sum_probs=16.1

Q ss_pred             CCCCCC-----EEEECCCCCCCCCCCCCEEC
Q ss_conf             788887-----44214888722778987153
Q gi|254780459|r   12 CPDTGK-----RFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus        12 C~~Cg~-----KFYDlnk~PiiCP~CG~e~~   37 (129)
                      |-.|+.     -|. -.|..|.||+||.-.+
T Consensus         2 cgkcsvslvg~gfl-tq~~~i~c~~cgsg~d   31 (34)
T d1x68a2           2 CGKCSVSLVGKGFL-TQNKEIFCQKCGSGMD   31 (34)
T ss_dssp             CTTTCCBCSSSCEE-EETTEEEETTTTCCCC
T ss_pred             CCCCEEEEEEEEEE-ECCCCEEEHHCCCCCC
T ss_conf             85025788711102-2157577011077767


No 96 
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=35.73  E-value=9.5  Score=16.59  Aligned_cols=18  Identities=28%  Similarity=0.338  Sum_probs=10.1

Q ss_pred             CEEEECCCCCCCCCCCCCE
Q ss_conf             7442148887227789871
Q gi|254780459|r   17 KRFYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        17 ~KFYDlnk~PiiCP~CG~e   35 (129)
                      |.|-+|- .-=+||-||+.
T Consensus        28 T~F~~LP-~~w~CP~C~a~   45 (52)
T d2dsxa1          28 TKFEDLP-DDWACPVCGAS   45 (52)
T ss_dssp             CCGGGSC-TTCBCTTTCCB
T ss_pred             CCHHHCC-CCCCCCCCCCC
T ss_conf             9978889-97899299891


No 97 
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.37  E-value=5.8  Score=17.91  Aligned_cols=15  Identities=7%  Similarity=0.133  Sum_probs=10.9

Q ss_pred             CCCCCCCCCCEECHH
Q ss_conf             872277898715323
Q gi|254780459|r   25 QVIVSPYTQNSWPLA   39 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~   39 (129)
                      .|-.|+.||..|.-.
T Consensus         1 Kpy~C~~C~k~F~~~   15 (29)
T d1sp1a_           1 KKFACPECPKRFMRS   15 (29)
T ss_dssp             CCSCCTTTTCCCSCS
T ss_pred             CCEECCCCCCEECCH
T ss_conf             999899088860435


No 98 
>d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.32  E-value=1.6  Score=21.31  Aligned_cols=24  Identities=13%  Similarity=0.220  Sum_probs=15.8

Q ss_pred             CCCCCCE----EEECCCCCCCCCCCCCE
Q ss_conf             7888874----42148887227789871
Q gi|254780459|r   12 CPDTGKR----FYDLNKQVIVSPYTQNS   35 (129)
Q Consensus        12 C~~Cg~K----FYDlnk~PiiCP~CG~e   35 (129)
                      |..|+.-    =|=-.|+-|.||.||.+
T Consensus         2 c~kcsvslvgrgflterddilc~dcgkd   29 (30)
T d1x4la2           2 CKKCSLSLVGRGFLTERDDILCPDCGKD   29 (30)
T ss_dssp             CSSSCCBCTTSCCEECSSSEECHHHHHT
T ss_pred             CCEEEEEEEEEECCCCCCCEECCCCCCC
T ss_conf             6161588872001000464654654767


No 99 
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.11  E-value=6.7  Score=17.49  Aligned_cols=16  Identities=0%  Similarity=-0.143  Sum_probs=11.8

Q ss_pred             CCCCCCCCCCEECHHH
Q ss_conf             8722778987153233
Q gi|254780459|r   25 QVIVSPYTQNSWPLAY   40 (129)
Q Consensus        25 ~PiiCP~CG~e~~~~~   40 (129)
                      .|-.|..||..|.-..
T Consensus         1 KPy~C~eCgK~F~~~s   16 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNS   16 (26)
T ss_dssp             CCEECSSSCCEESSHH
T ss_pred             CCCCCCCCCCEECCCC
T ss_conf             9824889858236673


No 100
>d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=34.48  E-value=10  Score=16.38  Aligned_cols=23  Identities=22%  Similarity=0.395  Sum_probs=19.7

Q ss_pred             CCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             1178888744214888722778987
Q gi|254780459|r   10 RTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus        10 R~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      -.|--||.+=|-+.|.  .|.+||.
T Consensus        17 ~~CrRCGr~syH~qK~--~CasCGy   39 (56)
T d1vqo11          17 TKCRRCGEKSYHTKKK--VCSSCGF   39 (56)
T ss_dssp             EECTTTCSEEEETTTT--EETTTCT
T ss_pred             CHHHCCCCHHHHHCCC--CCCCCCC
T ss_conf             6643558245554045--2553588


No 101
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=34.36  E-value=10  Score=16.32  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=16.4

Q ss_pred             CCCCCCCCCCEEEECCC-----------------CCCCCCCCCCE
Q ss_conf             83117888874421488-----------------87227789871
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNK-----------------QVIVSPYTQNS   35 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk-----------------~PiiCP~CG~e   35 (129)
                      .|.+|..||- -||=.+                 .-=+||-||+.
T Consensus         6 ~ky~C~~Cgy-iYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~   49 (70)
T d1dx8a_           6 GKYECEACGY-IYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP   49 (70)
T ss_dssp             SCEEETTTCC-EECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred             CEEECCCCCE-EECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             7078299990-8783447845687989996788898789399996


No 102
>d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]}
Probab=33.87  E-value=8.1  Score=16.98  Aligned_cols=31  Identities=13%  Similarity=0.221  Sum_probs=21.6

Q ss_pred             CCCCCCCCEEEE---CCCCCCCCCCCCCEECHHH
Q ss_conf             117888874421---4888722778987153233
Q gi|254780459|r   10 RTCPDTGKRFYD---LNKQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        10 R~C~~Cg~KFYD---lnk~PiiCP~CG~e~~~~~   40 (129)
                      -.||.-|....+   +...-|+||..|..|.+..
T Consensus        41 ~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~t   74 (109)
T d1fqta_          41 DRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRT   74 (109)
T ss_dssp             SBCTTSSCBSSTTCCEETTEEECTTTCCEEETTT
T ss_pred             EECCCCCCCCCCCEEECCCEEECCCCCCEEECCC
T ss_conf             5444247520134051487787455487998898


No 103
>d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.76  E-value=8.4  Score=16.90  Aligned_cols=33  Identities=18%  Similarity=0.422  Sum_probs=21.3

Q ss_pred             CCCCCCCCCCE---EEECCCC----C----CCCCCCCCEECHHH
Q ss_conf             83117888874---4214888----7----22778987153233
Q gi|254780459|r    8 TKRTCPDTGKR---FYDLNKQ----V----IVSPYTQNSWPLAY   40 (129)
Q Consensus         8 ~KR~C~~Cg~K---FYDlnk~----P----iiCP~CG~e~~~~~   40 (129)
                      ++..||.||.+   ||-+--.    |    .+|.+||.-|-.+.
T Consensus        22 t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~   65 (72)
T d1twfi2          22 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ   65 (72)
T ss_dssp             CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT
T ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCC
T ss_conf             67999797798579999514766788548999189989836160


No 104
>d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]}
Probab=31.42  E-value=10  Score=16.41  Aligned_cols=32  Identities=19%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             CCCCCCCCCE------EEECCCC-CCCCCCCCCEECHHH
Q ss_conf             3117888874------4214888-722778987153233
Q gi|254780459|r    9 KRTCPDTGKR------FYDLNKQ-VIVSPYTQNSWPLAY   40 (129)
Q Consensus         9 KR~C~~Cg~K------FYDlnk~-PiiCP~CG~e~~~~~   40 (129)
                      -.+||--|.-      ..+.+.. -|.||..|..|++..
T Consensus        41 ~~~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~t   79 (108)
T d3c0da1          41 QDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS   79 (108)
T ss_dssp             ESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT
T ss_pred             ECCCCCCCCCCCCCCEEEECCCCEEEECCCCCCEEECCC
T ss_conf             745797786123563788528960895444660886347


No 105
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=31.40  E-value=15  Score=15.32  Aligned_cols=26  Identities=12%  Similarity=0.152  Sum_probs=19.3

Q ss_pred             CCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             831178888744214888722778987153
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +|..|..|..|.   +-..+.| .||..|=
T Consensus        24 kk~RC~~C~KKl---~l~~~~C-rCg~~FC   49 (74)
T d1wfpa_          24 TATRCLSCNKKV---GVTGFKC-RCGSTFC   49 (74)
T ss_dssp             CCCBCSSSCCBC---TTTCEEC-TTSCEEC
T ss_pred             CCCCCHHCCCCC---CCCCEEC-CCCCHHH
T ss_conf             898271008816---7886234-8877221


No 106
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.83  E-value=8  Score=17.05  Aligned_cols=14  Identities=0%  Similarity=0.005  Sum_probs=9.4

Q ss_pred             CCCCCCCCCCEECH
Q ss_conf             87227789871532
Q gi|254780459|r   25 QVIVSPYTQNSWPL   38 (129)
Q Consensus        25 ~PiiCP~CG~e~~~   38 (129)
                      .|-.|--||.-|.-
T Consensus         2 kPf~C~~CgrkFAr   15 (28)
T d1a1ia3           2 KPFACDICGRKFAR   15 (28)
T ss_dssp             CCEECTTTCCEESS
T ss_pred             CCCCCCHHHHHHHC
T ss_conf             87120001025513


No 107
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.80  E-value=7.6  Score=17.16  Aligned_cols=16  Identities=6%  Similarity=-0.176  Sum_probs=9.3

Q ss_pred             CCCCCCCCEECHHHHH
Q ss_conf             2277898715323310
Q gi|254780459|r   27 IVSPYTQNSWPLAYFE   42 (129)
Q Consensus        27 iiCP~CG~e~~~~~~~   42 (129)
                      -+|-.||..|.....+
T Consensus         3 hvc~ecgkaf~esskl   18 (28)
T d1ubdc2           3 HVCAECGKAFVESSKL   18 (28)
T ss_dssp             EECTTTCCEESSHHHH
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             1398886999989887


No 108
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.71  E-value=9.7  Score=16.53  Aligned_cols=20  Identities=0%  Similarity=0.001  Sum_probs=14.4

Q ss_pred             CCCCCCCCCCCCEECHHHHH
Q ss_conf             88872277898715323310
Q gi|254780459|r   23 NKQVIVSPYTQNSWPLAYFE   42 (129)
Q Consensus        23 nk~PiiCP~CG~e~~~~~~~   42 (129)
                      +-.|-.|+.||..|.-...+
T Consensus         5 gekPy~C~~C~k~F~~~~~L   24 (36)
T d1x6ha2           5 GEKPYACSHCDKTFRQKQLL   24 (36)
T ss_dssp             CCCCEECSSSSCEESSHHHH
T ss_pred             CCCCEECCCCCCCCCCHHHH
T ss_conf             98797889987875877688


No 109
>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}
Probab=30.68  E-value=8.3  Score=16.92  Aligned_cols=30  Identities=13%  Similarity=0.049  Sum_probs=21.3

Q ss_pred             HHCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf             227831178888744214888722778987
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQN   34 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~   34 (129)
                      .+=.++.|+.|.-.=+--+..+..||.|+-
T Consensus         7 ~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G   36 (79)
T d1exka_           7 RIPTLEECDVCHGSGAKPGTQPQTCPTCHG   36 (79)
T ss_dssp             CCCCEEECGGGTTTSBCSSSCCEECTTTTT
T ss_pred             EEEEECCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf             811404479995756689831601897346


No 110
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.22  E-value=3.7  Score=19.08  Aligned_cols=24  Identities=13%  Similarity=0.173  Sum_probs=14.8

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             17888874421488872277898715323
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      .||-|---|    +.|++.| ||+.|=..
T Consensus        23 ~CpIC~~~~----~~pv~~~-CgH~fC~~   46 (103)
T d1jm7a_          23 ECPICLELI----KEPVSTK-CDHIFCKF   46 (103)
T ss_dssp             SCSSSCCCC----SSCCBCT-TSCCCCSH
T ss_pred             CCCCCCCHH----CCEEECC-CCCCHHHH
T ss_conf             997218231----8918837-99864167


No 111
>d1hxra_ b.88.1.1 (A:) RabGEF Mss4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=30.06  E-value=8.7  Score=16.80  Aligned_cols=15  Identities=7%  Similarity=0.124  Sum_probs=12.0

Q ss_pred             CCCCCCCCCCCCCEE
Q ss_conf             488872277898715
Q gi|254780459|r   22 LNKQVIVSPYTQNSW   36 (129)
Q Consensus        22 lnk~PiiCP~CG~e~   36 (129)
                      -|+.-|+||.||..+
T Consensus         8 kN~~~v~C~~C~S~i   22 (115)
T d1hxra_           8 RNRKAVLCQRCGSRV   22 (115)
T ss_dssp             BBSSCEEETTTCCEE
T ss_pred             CCCCEEECCCCCCEE
T ss_conf             674569999999886


No 112
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.74  E-value=8.3  Score=16.93  Aligned_cols=11  Identities=9%  Similarity=-0.007  Sum_probs=7.0

Q ss_pred             CCCCCCCEECH
Q ss_conf             27789871532
Q gi|254780459|r   28 VSPYTQNSWPL   38 (129)
Q Consensus        28 iCP~CG~e~~~   38 (129)
                      -||-|++.+..
T Consensus         4 qcphc~tiiar   14 (28)
T d2ct1a1           4 HCPHCDTVIAR   14 (28)
T ss_dssp             ECSSSSCEESS
T ss_pred             CCCCCHHHEEE
T ss_conf             69963411132


No 113
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]}
Probab=29.05  E-value=8  Score=17.04  Aligned_cols=29  Identities=10%  Similarity=0.251  Sum_probs=19.4

Q ss_pred             HH-CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC
Q ss_conf             22-7831178888744214888722778987153
Q gi|254780459|r    5 EL-GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP   37 (129)
Q Consensus         5 el-G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~   37 (129)
                      +| |-...|..|...|    +.-+.||-|+.+..
T Consensus        13 ~~~~~~~~C~~C~~~~----~~~a~CPdC~~~Le   42 (71)
T d2jnea1          13 DQDNGHARCRSCGEFI----EMKALCPDCHQPLQ   42 (71)
T ss_dssp             EEETTEEEETTTCCEE----EEEEECTTTCSBCE
T ss_pred             CCCCCCEEHHHHHHHH----EEEEECCCCCCHHH
T ss_conf             0258977614640102----36775886020899


No 114
>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}
Probab=29.05  E-value=16  Score=15.21  Aligned_cols=27  Identities=19%  Similarity=0.261  Sum_probs=20.2

Q ss_pred             CCCCCCCCCCEEEECCCCCC----------CCCCCCC
Q ss_conf             83117888874421488872----------2778987
Q gi|254780459|r    8 TKRTCPDTGKRFYDLNKQVI----------VSPYTQN   34 (129)
Q Consensus         8 ~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~   34 (129)
                      ++-+|..|+-+||=-.|.+-          -||.|+.
T Consensus         8 I~L~st~~~~~~Y~T~Knk~~~~~kLel~Ky~p~~~k   44 (52)
T d2gyc11           8 IKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQ   44 (52)
T ss_dssp             CCCCCCCSSSCCCCCCCCCSSSCCSCCCCCBCCSSSS
T ss_pred             EEEEEECCCCCEEEECCCCCCCCHHEEEECCCCCCCC
T ss_conf             9999837888179862788899414389732888773


No 115
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.85  E-value=7.6  Score=17.18  Aligned_cols=16  Identities=0%  Similarity=-0.149  Sum_probs=9.6

Q ss_pred             CCCCCCCEE-CHHHHHC
Q ss_conf             277898715-3233101
Q gi|254780459|r   28 VSPYTQNSW-PLAYFEA   43 (129)
Q Consensus        28 iCP~CG~e~-~~~~~~~   43 (129)
                      |||+||--- .|..+.+
T Consensus         3 vC~~Cg~~C~KPSvL~K   19 (28)
T d1bboa1           3 ICEECGIRAKKPSMLKK   19 (28)
T ss_dssp             BCTTTCCBCSSHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHH
T ss_conf             60021764378799999


No 116
>d2pw4a1 d.380.1.1 (A:1-184) Uncharacterized protein Jann2411 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=28.13  E-value=14  Score=15.61  Aligned_cols=32  Identities=16%  Similarity=0.262  Sum_probs=22.1

Q ss_pred             CHHHCCCCCC--CCCCCEEEECCCCC---CCCCCCCC
Q ss_conf             5222783117--88887442148887---22778987
Q gi|254780459|r    3 KPELGTKRTC--PDTGKRFYDLNKQV---IVSPYTQN   34 (129)
Q Consensus         3 K~elG~KR~C--~~Cg~KFYDlnk~P---iiCP~CG~   34 (129)
                      ...|+.=|.|  |.|+.-|||.-|..   ==++.||.
T Consensus       138 ~~~~~RLr~C~ap~C~~vF~D~Srn~~RRwCSm~CGN  174 (184)
T d2pw4a1         138 HQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQN  174 (184)
T ss_dssp             TTCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHH
T ss_pred             CCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf             6754540547999987587758999987756853108


No 117
>d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=28.07  E-value=18  Score=14.93  Aligned_cols=35  Identities=9%  Similarity=-0.008  Sum_probs=22.9

Q ss_pred             CCCCCCCCE---EEECCC---CCCCCCCCCCEECHHHHHCC
Q ss_conf             117888874---421488---87227789871532331012
Q gi|254780459|r   10 RTCPDTGKR---FYDLNK---QVIVSPYTQNSWPLAYFEAP   44 (129)
Q Consensus        10 R~C~~Cg~K---FYDlnk---~PiiCP~CG~e~~~~~~~~~   44 (129)
                      -+||-|++-   +--|.+   .+.+|-+||...+-+.+..+
T Consensus         4 W~CPICm~~Ne~~~e~~~n~~~~p~C~nCGV~~D~em~~~S   44 (47)
T d2j9ub1           4 WVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSS   44 (47)
T ss_dssp             EECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCHHHHGGG
T ss_pred             EECCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHC
T ss_conf             55361366410012560477788863445875378786521


No 118
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.01  E-value=11  Score=16.24  Aligned_cols=19  Identities=5%  Similarity=0.015  Sum_probs=13.7

Q ss_pred             CCCCCC--CCCCCEECHHHHH
Q ss_conf             887227--7898715323310
Q gi|254780459|r   24 KQVIVS--PYTQNSWPLAYFE   42 (129)
Q Consensus        24 k~PiiC--P~CG~e~~~~~~~   42 (129)
                      -.|-+|  |+|+..|.-+--+
T Consensus         4 dkPF~C~~pGC~q~F~neDhL   24 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHL   24 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHH
T ss_pred             CCCEECCCCCCCCCCCCHHHH
T ss_conf             875314899855325665788


No 119
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.83  E-value=9.9  Score=16.48  Aligned_cols=12  Identities=0%  Similarity=-0.023  Sum_probs=6.8

Q ss_pred             CCCCCCCCCCEE
Q ss_conf             872277898715
Q gi|254780459|r   25 QVIVSPYTQNSW   36 (129)
Q Consensus        25 ~PiiCP~CG~e~   36 (129)
                      .|--|-.||.-|
T Consensus         4 KPYeC~~C~KrF   15 (44)
T d2csha2           4 KPYECNICAKRF   15 (44)
T ss_dssp             CCEECSSSCCEE
T ss_pred             CCEECCCHHHHH
T ss_conf             753315202454


No 120
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.68  E-value=10  Score=16.43  Aligned_cols=14  Identities=7%  Similarity=0.112  Sum_probs=10.1

Q ss_pred             CCCCCCCCCEECHH
Q ss_conf             72277898715323
Q gi|254780459|r   26 VIVSPYTQNSWPLA   39 (129)
Q Consensus        26 PiiCP~CG~e~~~~   39 (129)
                      -.+|-+||..|...
T Consensus         4 afvcskcgktftrr   17 (37)
T d1x6ha1           4 AFVCSKCGKTFTRR   17 (37)
T ss_dssp             CEECSSSCCEESCH
T ss_pred             EEEECCCCCCHHCC
T ss_conf             23330034411000


No 121
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=25.42  E-value=11  Score=16.23  Aligned_cols=28  Identities=4%  Similarity=-0.161  Sum_probs=12.2

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECH
Q ss_conf             1788887442148887227789871532
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL   38 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~   38 (129)
                      +|+=|-.-|-+..-.|..|.+|+..|-.
T Consensus         8 ~C~IC~~~~~~~~~~~c~c~~c~h~~H~   35 (60)
T d1vyxa_           8 VCWICNEELGNERFRACGCTGELENVHR   35 (60)
T ss_dssp             EETTTTEECSCCCCCSCCCSSGGGSCCH
T ss_pred             CCCCCCCCCCCCEEEECCCCCCCCEECH
T ss_conf             9923886277751673145897788738


No 122
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=25.41  E-value=13  Score=15.75  Aligned_cols=11  Identities=9%  Similarity=0.223  Sum_probs=6.8

Q ss_pred             CCCCCCCCCEE
Q ss_conf             72277898715
Q gi|254780459|r   26 VIVSPYTQNSW   36 (129)
Q Consensus        26 PiiCP~CG~e~   36 (129)
                      --.||-|++-|
T Consensus        58 ~q~CpqCkt~Y   68 (93)
T d1weoa_          58 TQNCPQCKTRY   68 (93)
T ss_dssp             CSSCTTTCCCC
T ss_pred             CCCCCCCCCHH
T ss_conf             70274448724


No 123
>d2ea9a1 d.110.8.1 (A:8-110) Hypothetical protein YfjZ {Escherichia coli [TaxId: 562]}
Probab=24.83  E-value=6.8  Score=17.45  Aligned_cols=18  Identities=28%  Similarity=0.483  Sum_probs=12.8

Q ss_pred             CCCHHHCCCCCCCCC-CCE
Q ss_conf             975222783117888-874
Q gi|254780459|r    1 MAKPELGTKRTCPDT-GKR   18 (129)
Q Consensus         1 MaK~elG~KR~C~~C-g~K   18 (129)
                      |+.+.||.||.-.-| |+|
T Consensus         1 ~s~~~WGL~~~itP~fGAR   19 (103)
T d2ea9a1           1 MSNTTWGLQRDITPRLGAR   19 (103)
T ss_dssp             CCSCHHHHTCCSSSEEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCE
T ss_conf             9766547667757342222


No 124
>d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
Probab=24.46  E-value=17  Score=14.96  Aligned_cols=30  Identities=17%  Similarity=0.241  Sum_probs=22.1

Q ss_pred             CCCCCCCEEEECC---CCCCCCCCCCCEECHHH
Q ss_conf             1788887442148---88722778987153233
Q gi|254780459|r   11 TCPDTGKRFYDLN---KQVIVSPYTQNSWPLAY   40 (129)
Q Consensus        11 ~C~~Cg~KFYDln---k~PiiCP~CG~e~~~~~   40 (129)
                      +||-=|+++-.-.   ..-|+|||.|=.|...=
T Consensus        76 ~C~HRG~~L~~~~~g~~~~i~CpYHgW~yd~~G  108 (150)
T d2bmoa1          76 VCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNG  108 (150)
T ss_dssp             BCTTTCCBCCCSSEEECSEEECTTTCCEEETTS
T ss_pred             HCCCCCCCCCCCCCCCCCCEEECCCCEEECCCC
T ss_conf             345343554000125544147402120540664


No 125
>d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]}
Probab=24.26  E-value=13  Score=15.69  Aligned_cols=33  Identities=12%  Similarity=0.114  Sum_probs=21.2

Q ss_pred             CCCCCCCCCCE------EEECCC-CCCCCCCCCCEECHHH
Q ss_conf             83117888874------421488-8722778987153233
Q gi|254780459|r    8 TKRTCPDTGKR------FYDLNK-QVIVSPYTQNSWPLAY   40 (129)
Q Consensus         8 ~KR~C~~Cg~K------FYDlnk-~PiiCP~CG~e~~~~~   40 (129)
                      .-..||--|+-      +.+.+. .-|+||+.|..|.+..
T Consensus        42 ~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~t   81 (108)
T d2jo6a1          42 ISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD   81 (108)
T ss_dssp             EESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT
T ss_pred             EECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCEEECCC
T ss_conf             9784887897502220475042478898998886487798


No 126
>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}
Probab=24.21  E-value=8.8  Score=16.77  Aligned_cols=29  Identities=14%  Similarity=0.085  Sum_probs=19.7

Q ss_pred             CCCCCCCC--EEEECCCCCCCC---CCCCCEECH
Q ss_conf             11788887--442148887227---789871532
Q gi|254780459|r   10 RTCPDTGK--RFYDLNKQVIVS---PYTQNSWPL   38 (129)
Q Consensus        10 R~C~~Cg~--KFYDlnk~PiiC---P~CG~e~~~   38 (129)
                      |.|..|.-  -=..++..|+.|   |..|.|...
T Consensus         2 r~Ci~C~~~C~~~~~~~~~~~C~~Np~~g~e~~~   35 (179)
T d1ps9a3           2 NTCIGCNQACLDQIFVGKVTSCLVNPRACHETKM   35 (179)
T ss_dssp             CCCCCCCTTTHHHHHTTCCCCCSSCTTTTCTTTS
T ss_pred             CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf             5201437888657624980489647654676645


No 127
>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}
Probab=24.02  E-value=7.7  Score=17.14  Aligned_cols=10  Identities=20%  Similarity=0.564  Sum_probs=5.2

Q ss_pred             HCCCCCCCCC
Q ss_conf             2783117888
Q gi|254780459|r    6 LGTKRTCPDT   15 (129)
Q Consensus         6 lG~KR~C~~C   15 (129)
                      .|.+.+|+||
T Consensus        13 YGA~~iCASC   22 (111)
T d1xg8a_          13 YGADVICASC   22 (111)
T ss_dssp             EECSSCCGGG
T ss_pred             ECCCCCCHHH
T ss_conf             7445404543


No 128
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.76  E-value=13  Score=15.79  Aligned_cols=18  Identities=6%  Similarity=0.054  Sum_probs=11.5

Q ss_pred             CCCCC--CCCCCEECHHHHH
Q ss_conf             87227--7898715323310
Q gi|254780459|r   25 QVIVS--PYTQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiC--P~CG~e~~~~~~~   42 (129)
                      .|-.|  |+||..|.-..-+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L   20 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDEL   20 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHH
T ss_pred             CCCCCCCCCCCCCCCCHHHH
T ss_conf             90999099879174875676


No 129
>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=23.62  E-value=17  Score=15.07  Aligned_cols=19  Identities=5%  Similarity=-0.008  Sum_probs=11.9

Q ss_pred             EEEECC-CCCCCCCCCCCEE
Q ss_conf             442148-8872277898715
Q gi|254780459|r   18 RFYDLN-KQVIVSPYTQNSW   36 (129)
Q Consensus        18 KFYDln-k~PiiCP~CG~e~   36 (129)
                      =||=++ ++-+.|.+||.++
T Consensus        30 GFyytg~~D~v~C~~C~~~l   49 (97)
T d1se0a_          30 GMYFTHAGDKVKCFFCGVEI   49 (97)
T ss_dssp             TEEECSSTTCEEETTTCCEE
T ss_pred             CCEECCCCCEEEECCCCCCC
T ss_conf             98788999877938578890


No 130
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.05  E-value=14  Score=15.48  Aligned_cols=18  Identities=6%  Similarity=0.196  Sum_probs=11.5

Q ss_pred             CCCCCCC--CCCEECHHHHH
Q ss_conf             8722778--98715323310
Q gi|254780459|r   25 QVIVSPY--TQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiCP~--CG~e~~~~~~~   42 (129)
                      .|-+|+.  ||..|.-..-+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L   20 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNL   20 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHH
T ss_pred             CCCCCCCCCCCCEECCHHHC
T ss_conf             98158889979358917783


No 131
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.02  E-value=13  Score=15.77  Aligned_cols=18  Identities=6%  Similarity=-0.042  Sum_probs=11.8

Q ss_pred             CCCCCCC--CCCEECHHHHH
Q ss_conf             8722778--98715323310
Q gi|254780459|r   25 QVIVSPY--TQNSWPLAYFE   42 (129)
Q Consensus        25 ~PiiCP~--CG~e~~~~~~~   42 (129)
                      .|-+|+.  ||..|.-..-+
T Consensus         1 kp~~C~~~gCgk~F~~~~~L   20 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENL   20 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHH
T ss_pred             CCEECCCCCCCCEECCHHHH
T ss_conf             98068889988448976575


No 132
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=22.64  E-value=22  Score=14.36  Aligned_cols=32  Identities=9%  Similarity=0.166  Sum_probs=20.3

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC
Q ss_conf             178888744214888722778987153233101
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA   43 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~   43 (129)
                      .|+=|=..|-. +.....+|.||..|-..=+.+
T Consensus         7 ~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~   38 (55)
T d1iyma_           7 ECAVCLAELED-GEEARFLPRCGHGFHAECVDM   38 (55)
T ss_dssp             CCTTTCCCCCT-TSCCEECSSSCCEECTTHHHH
T ss_pred             CCEEECCCCCC-CCEEEEECCCCCCCCHHHHHH
T ss_conf             98497900107-988999089898105999999


No 133
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=22.35  E-value=18  Score=14.85  Aligned_cols=21  Identities=29%  Similarity=0.688  Sum_probs=13.7

Q ss_pred             HHHCCCCCCCCCCCEEEECCC
Q ss_conf             222783117888874421488
Q gi|254780459|r    4 PELGTKRTCPDTGKRFYDLNK   24 (129)
Q Consensus         4 ~elG~KR~C~~Cg~KFYDlnk   24 (129)
                      ..||..-.|+.||+.-|-+-|
T Consensus        10 ~~~g~~~kC~~C~k~VY~~E~   30 (43)
T d1b8ta3          10 QKVGGSDGCPRCGQAVYAAEK   30 (43)
T ss_dssp             CCCCCCEECTTTSCEECSSSC
T ss_pred             CCCCCCCCCCCCCCEEEHHHH
T ss_conf             236889867567999668898


No 134
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.27  E-value=15  Score=15.30  Aligned_cols=27  Identities=7%  Similarity=-0.107  Sum_probs=11.8

Q ss_pred             CCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             7888874421488872277898715323
Q gi|254780459|r   12 CPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        12 C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      ||=|-.+|=.-++.+.++| ||+.|-..
T Consensus         3 CpICl~~~~~~~~~~~~~~-CgH~~c~~   29 (52)
T d1ur6b_           3 CPLCMEPLEIDDINFFPCT-CGYQICRF   29 (52)
T ss_dssp             ETTTTEECCGGGTTCCSSS-SSCCCCHH
T ss_pred             CCCCCHHHHCCCCEEEECC-CCCCCCHH
T ss_conf             9587823518982598669-97704558


No 135
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=22.01  E-value=14  Score=15.53  Aligned_cols=12  Identities=8%  Similarity=-0.039  Sum_probs=8.5

Q ss_pred             CCCCCCCCCEEC
Q ss_conf             722778987153
Q gi|254780459|r   26 VIVSPYTQNSWP   37 (129)
Q Consensus        26 PiiCP~CG~e~~   37 (129)
                      |=+||.|..-+-
T Consensus         2 P~lCPrC~kG~H   13 (32)
T d1cl4a_           2 PGLCPRCKRGKH   13 (32)
T ss_dssp             CCSCSSCSSCSS
T ss_pred             CCCCCCCCCCCH
T ss_conf             864845467556


No 136
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.81  E-value=14  Score=15.53  Aligned_cols=16  Identities=13%  Similarity=0.372  Sum_probs=10.6

Q ss_pred             CCCCCCC--CCCEECHHH
Q ss_conf             8722778--987153233
Q gi|254780459|r   25 QVIVSPY--TQNSWPLAY   40 (129)
Q Consensus        25 ~PiiCP~--CG~e~~~~~   40 (129)
                      .|-+||.  ||..|.-..
T Consensus         1 rPf~C~~~gC~K~F~~~~   18 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQST   18 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTT
T ss_pred             CCCCCCCCCCCCCCCCHH
T ss_conf             981898899698699899


No 137
>d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]}
Probab=21.45  E-value=19  Score=14.76  Aligned_cols=10  Identities=10%  Similarity=0.165  Sum_probs=5.6

Q ss_pred             CCCCCCCCEE
Q ss_conf             2277898715
Q gi|254780459|r   27 IVSPYTQNSW   36 (129)
Q Consensus        27 iiCP~CG~e~   36 (129)
                      |-||.||+.+
T Consensus         7 v~CP~C~k~~   16 (65)
T d1lv3a_           7 VNCPTCGKTV   16 (65)
T ss_dssp             EECTTTCCEE
T ss_pred             EECCCCCCCC
T ss_conf             0488999834


No 138
>d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]}
Probab=21.44  E-value=7  Score=17.40  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=21.6

Q ss_pred             HHCCCCCCCCCCCEEEECCCC-----CCCCC----------CCCCEECHHHHH
Q ss_conf             227831178888744214888-----72277----------898715323310
Q gi|254780459|r    5 ELGTKRTCPDTGKRFYDLNKQ-----VIVSP----------YTQNSWPLAYFE   42 (129)
Q Consensus         5 elG~KR~C~~Cg~KFYDlnk~-----PiiCP----------~CG~e~~~~~~~   42 (129)
                      .+| +|.|| |  |||.=++.     -|+||          .||--+.++.-.
T Consensus        42 ~yG-~~~CP-C--r~~~gk~ee~k~~~~iCPC~~~~e~g~ChC~Lf~t~e~~~   90 (108)
T d2pu9a1          42 ELG-SPLCP-C--RHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDF   90 (108)
T ss_dssp             HHS-SCBCT-T--BCCSCHHHHHHHCTTBSSCHHHHHHCCCTTSSSBCTTCTT
T ss_pred             HCC-CCCCC-C--CCCCCCHHHHHCCCEECCCCCHHHCCEEEEEEEECCCCCC
T ss_conf             809-98788-6--5678867786357533589685242805587775555444


No 139
>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.24  E-value=15  Score=15.41  Aligned_cols=18  Identities=6%  Similarity=-0.027  Sum_probs=13.4

Q ss_pred             EEECC-CCCCCCCCCCCEE
Q ss_conf             42148-8872277898715
Q gi|254780459|r   19 FYDLN-KQVIVSPYTQNSW   36 (129)
Q Consensus        19 FYDln-k~PiiCP~CG~e~   36 (129)
                      ||=.+ ++-+.|.+||.++
T Consensus        63 Fyytg~~D~v~Cf~C~~~l   81 (111)
T d1i3oe_          63 LYYTGIGDQVQCFACGGKL   81 (111)
T ss_dssp             EEEEEETTEEEETTTCCEE
T ss_pred             CEECCCCCEEEECCCCCEE
T ss_conf             8787999867947679891


No 140
>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.06  E-value=24  Score=14.11  Aligned_cols=27  Identities=22%  Similarity=0.504  Sum_probs=17.3

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHH
Q ss_conf             17888874421488872277898715323
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~   39 (129)
                      .|..=+-|-.+|  -|++|++|+..|=+.
T Consensus        27 ~Cs~~~C~~~~~--lp~~C~~C~~~FC~~   53 (86)
T d1wfea_          27 SCSFKGCTDVEL--VAVICPYCEKNFCLR   53 (86)
T ss_dssp             ECCSTTCCCEES--SCEECTTTCCEECGG
T ss_pred             CCCCCCCCCCCC--CCCCCHHHCCCHHHC
T ss_conf             678777888655--741521118611154


No 141
>d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.81  E-value=23  Score=14.18  Aligned_cols=15  Identities=20%  Similarity=0.731  Sum_probs=10.9

Q ss_pred             CCCCCCCE-----EEECCCC
Q ss_conf             17888874-----4214888
Q gi|254780459|r   11 TCPDTGKR-----FYDLNKQ   25 (129)
Q Consensus        11 ~C~~Cg~K-----FYDlnk~   25 (129)
                      +|..|++|     ||-+-|.
T Consensus         1 vC~tC~~kLRGqpFYAvekk   20 (32)
T d1x61a2           1 VCSTCRAQLRGQHFYAVERR   20 (32)
T ss_dssp             BCSSSCCBCTTSCEEESSSC
T ss_pred             CEEEECCEECCCCCEEEECC
T ss_conf             93580745158803586211


No 142
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=20.31  E-value=20  Score=14.57  Aligned_cols=27  Identities=7%  Similarity=0.049  Sum_probs=18.4

Q ss_pred             CCCCCCCEEEECCCCCCCCCCCCCEECHHHH
Q ss_conf             1788887442148887227789871532331
Q gi|254780459|r   11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF   41 (129)
Q Consensus        11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~   41 (129)
                      .|+=|-..|    +.|+++..||+.|-..=+
T Consensus         7 ~C~IC~~~~----~~~~~~~~C~H~Fc~~Ci   33 (68)
T d1chca_           7 RCPICLEDP----SNYSMALPCLHAFCYVCI   33 (68)
T ss_dssp             CCSSCCSCC----CSCEEETTTTEEESTTHH
T ss_pred             CCCCCCCCC----CCCCEEECCCCCCCHHHH
T ss_conf             994499396----688388289991768999


No 143
>d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]}
Probab=20.27  E-value=21  Score=14.40  Aligned_cols=30  Identities=17%  Similarity=0.233  Sum_probs=20.4

Q ss_pred             CCCCCCCCEEE----ECCCCCCCCCCCCCEECHH
Q ss_conf             11788887442----1488872277898715323
Q gi|254780459|r   10 RTCPDTGKRFY----DLNKQVIVSPYTQNSWPLA   39 (129)
Q Consensus        10 R~C~~Cg~KFY----Dlnk~PiiCP~CG~e~~~~   39 (129)
                      -+||-=|+..-    ...+.-|+||+-|..|.+.
T Consensus        67 n~CpHrga~L~~g~~~~~~~~i~Cp~Hgw~fdl~  100 (142)
T d2de6a1          67 DRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWE  100 (142)
T ss_dssp             SSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETT
T ss_pred             CCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECC
T ss_conf             7549987569726524606989644552399616


No 144
>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.26  E-value=19  Score=14.70  Aligned_cols=13  Identities=0%  Similarity=-0.038  Sum_probs=8.4

Q ss_pred             CCCCCCCCCCCEE
Q ss_conf             8872277898715
Q gi|254780459|r   24 KQVIVSPYTQNSW   36 (129)
Q Consensus        24 k~PiiCP~CG~e~   36 (129)
                      .+-+.|.+||.++
T Consensus        48 ~D~v~Cf~C~~~l   60 (137)
T d2qfaa1          48 PDLAQCFFCFKEL   60 (137)
T ss_dssp             TTCEEETTTCCEE
T ss_pred             CCEEEECCCCCCC
T ss_conf             9868966557783


No 145
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=20.25  E-value=18  Score=14.89  Aligned_cols=16  Identities=6%  Similarity=0.056  Sum_probs=9.9

Q ss_pred             CCCCCCCCEECHHHHH
Q ss_conf             2277898715323310
Q gi|254780459|r   27 IVSPYTQNSWPLAYFE   42 (129)
Q Consensus        27 iiCP~CG~e~~~~~~~   42 (129)
                      -.|..|+..|.--..+
T Consensus         6 ~~C~~C~k~F~s~qAL   21 (37)
T d1njqa_           6 YTCSFCKREFRSAQAL   21 (37)
T ss_dssp             EECTTTCCEESSHHHH
T ss_pred             CCCCCCCCCCCCCCCC
T ss_conf             2889988833786545


Done!