Query gi|254780459|ref|YP_003064872.1| hypothetical protein CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 108 out of 275 Neff 6.5 Searched_HMMs 13730 Date Wed Jun 1 05:42:16 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780459.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2akla2 g.41.3.5 (A:3-40) Hypo 94.8 0.0056 4.1E-07 36.3 1.9 31 10-40 4-34 (38) 2 d1smyd_ e.29.1.2 (D:) RNA-poly 94.0 0.0099 7.2E-07 34.8 1.7 31 11-43 56-86 (1504) 3 d2f9yb1 c.14.1.4 (B:23-285) Ac 93.9 0.0064 4.7E-07 36.0 0.7 29 10-38 3-33 (263) 4 d1nnqa2 g.41.5.1 (A:135-171) R 93.6 0.018 1.3E-06 33.3 2.5 29 5-35 1-29 (37) 5 d1pfta_ g.41.3.1 (A:) Transcri 91.7 0.038 2.8E-06 31.2 2.0 31 8-38 4-36 (50) 6 d1yuza2 g.41.5.1 (A:167-202) N 91.6 0.053 3.8E-06 30.4 2.7 27 7-35 3-29 (36) 7 d1vd4a_ g.41.3.1 (A:) Transcri 91.5 0.058 4.2E-06 30.1 2.8 28 11-38 16-51 (62) 8 d2gmga1 a.4.5.82 (A:1-105) Hyp 91.2 0.042 3.1E-06 31.0 1.8 27 11-37 69-95 (105) 9 d1akya2 g.41.2.1 (A:131-168) M 91.0 0.061 4.4E-06 30.0 2.5 28 9-36 2-32 (38) 10 d1dl6a_ g.41.3.1 (A:) Transcri 89.7 0.088 6.4E-06 29.0 2.4 34 7-40 9-44 (58) 11 d2ey4e1 g.41.16.1 (E:4-55) Rib 89.0 0.092 6.7E-06 28.9 2.1 21 10-35 3-23 (52) 12 d1dvpa2 g.50.1.1 (A:149-220) H 86.5 0.22 1.6E-05 26.6 2.8 35 3-38 7-41 (72) 13 d2apob1 g.41.16.1 (B:403-457) 84.8 0.22 1.6E-05 26.6 2.2 22 9-35 4-25 (55) 14 d2j0151 g.41.8.5 (5:2-60) Ribo 84.7 0.23 1.6E-05 26.5 2.2 22 9-34 29-50 (59) 15 d2hf1a1 b.171.1.1 (A:2-60) Hyp 84.6 0.19 1.4E-05 27.0 1.7 30 10-39 8-38 (59) 16 d2jnya1 b.171.1.1 (A:1-59) Unc 84.5 0.32 2.3E-05 25.6 2.8 37 3-39 4-41 (59) 17 d2gnra1 b.40.4.15 (A:8-144) Hy 84.3 0.21 1.5E-05 26.7 1.9 23 10-35 40-62 (137) 18 d2ct7a1 g.44.1.4 (A:8-80) Ring 84.3 0.33 2.4E-05 25.5 2.8 28 9-36 18-46 (73) 19 d2dkta1 g.89.1.1 (A:8-81) RING 84.2 0.26 1.9E-05 26.2 2.3 25 8-36 50-74 (74) 20 d2pk7a1 b.171.1.1 (A:3-61) Unc 84.0 0.18 1.3E-05 27.1 1.5 30 10-39 7-37 (59) 21 d1s3ga2 g.41.2.1 (A:126-160) M 83.6 0.3 2.2E-05 25.7 2.4 28 9-36 2-32 (35) 22 d2ak3a2 g.41.2.1 (A:125-161) M 83.5 0.25 1.9E-05 26.2 2.0 28 9-36 2-32 (37) 23 d2k4xa1 g.41.8.8 (A:1-55) Ribo 83.1 0.31 2.2E-05 25.7 2.3 29 8-36 17-47 (55) 24 d1zbdb_ g.50.1.1 (B:) Effector 83.0 0.29 2.1E-05 25.9 2.1 28 10-37 49-76 (124) 25 d1zina2 g.41.2.1 (A:126-160) M 82.6 0.35 2.6E-05 25.3 2.4 28 9-36 2-32 (35) 26 d1ltla_ b.40.4.11 (A:) DNA rep 82.5 0.36 2.6E-05 25.3 2.4 28 10-37 127-160 (239) 27 d1m2ka_ c.31.1.5 (A:) AF1676, 81.7 0.38 2.8E-05 25.1 2.3 32 9-40 121-156 (249) 28 d1lkoa2 g.41.5.1 (A:148-191) R 81.6 0.28 2E-05 25.9 1.6 28 7-35 6-33 (44) 29 d1wfka_ g.50.1.1 (A:) Zinc fin 81.2 0.46 3.3E-05 24.6 2.6 30 7-37 7-36 (88) 30 d1hk8a_ c.7.1.3 (A:) Class III 80.5 0.34 2.5E-05 25.4 1.7 25 11-35 517-542 (561) 31 d2zjrz1 g.41.8.5 (Z:2-59) Ribo 79.9 0.34 2.5E-05 25.4 1.6 22 9-34 29-50 (58) 32 d1joca1 g.50.1.1 (A:1348-1411) 79.6 0.5 3.6E-05 24.4 2.3 27 10-37 9-35 (64) 33 d1e4va2 g.41.2.1 (A:122-156) M 79.5 0.41 3E-05 24.9 1.9 28 9-36 2-32 (35) 34 d1qxfa_ g.41.8.4 (A:) Ribosoma 78.8 0.79 5.7E-05 23.2 3.2 29 8-36 6-36 (58) 35 d1rqga3 g.41.1.1 (A:139-173) M 77.6 0.66 4.8E-05 23.7 2.5 32 9-45 2-34 (35) 36 d1pfva3 g.41.1.1 (A:141-175) M 77.3 0.39 2.8E-05 25.1 1.2 32 9-45 2-34 (35) 37 d1jj2y_ g.41.8.1 (Y:) Ribosoma 76.9 0.6 4.4E-05 23.9 2.1 30 7-38 25-57 (73) 38 d1l1oc_ b.40.4.3 (C:) Replicat 75.7 0.58 4.2E-05 24.0 1.8 28 10-37 41-70 (178) 39 d1z60a1 g.49.1.2 (A:328-386) T 73.6 0.55 4E-05 24.2 1.2 33 4-38 10-42 (59) 40 d1dgsa1 a.60.2.2 (A:401-581) N 72.8 0.59 4.3E-05 23.9 1.2 10 11-20 5-14 (181) 41 d2baya1 g.44.1.2 (A:1-56) Pre- 70.8 0.75 5.5E-05 23.3 1.4 30 11-44 2-31 (56) 42 d1twfl_ g.41.9.2 (L:) RBP12 su 70.6 1.5 0.00011 21.5 2.8 30 7-36 2-31 (46) 43 d1vfya_ g.50.1.1 (A:) vps27p p 69.8 1.4 0.0001 21.6 2.6 31 6-37 2-32 (67) 44 d1q1aa_ c.31.1.5 (A:) Hst2 {Ba 69.6 1.1 7.7E-05 22.4 1.9 31 9-39 136-176 (289) 45 d1jm7b_ g.44.1.1 (B:) bard1 RI 69.2 1.2 8.6E-05 22.1 2.1 30 10-43 23-52 (97) 46 d6rxna_ g.41.5.1 (A:) Rubredox 69.1 1.2 8.5E-05 22.2 2.1 27 8-35 2-38 (45) 47 d1j8fa_ c.31.1.5 (A:) Sirt2 hi 68.6 0.97 7E-05 22.7 1.6 31 9-39 159-198 (323) 48 d1yc5a1 c.31.1.5 (A:1-245) NAD 65.4 1.5 0.00011 21.5 2.0 31 9-39 121-158 (245) 49 d1s5pa_ c.31.1.5 (A:) NAD-depe 65.4 1 7.3E-05 22.5 1.1 31 9-39 113-147 (235) 50 d1vqoz1 g.41.8.1 (Z:10-82) Rib 65.2 0.88 6.4E-05 22.9 0.8 30 7-38 25-57 (73) 51 d2fiya1 e.59.1.1 (A:19-308) Fd 65.2 1.3 9.4E-05 21.9 1.6 32 6-37 161-201 (290) 52 d1ryqa_ g.41.9.3 (A:) putative 65.0 1.3 9.6E-05 21.8 1.7 22 8-34 8-29 (67) 53 d1wgma_ g.44.1.2 (A:) Ubiquiti 64.9 1.7 0.00012 21.2 2.1 32 9-44 22-53 (98) 54 d2b4ya1 c.31.1.5 (A:36-302) NA 64.9 1.6 0.00011 21.4 2.0 31 9-39 128-184 (267) 55 d1y02a2 g.50.1.1 (A:20-70) Rif 61.8 1.7 0.00012 21.2 1.7 27 11-38 2-28 (51) 56 d2dkta2 g.93.1.1 (A:82-137) RI 61.4 1.6 0.00012 21.3 1.5 24 9-34 2-25 (56) 57 d2csha1 g.37.1.1 (A:8-60) Zinc 59.1 2.7 0.00019 20.0 2.3 30 11-41 5-45 (53) 58 d1p9ra_ c.37.1.11 (A:) Extrace 58.8 2.1 0.00015 20.6 1.8 23 8-34 294-336 (401) 59 d1d4ua2 g.39.1.5 (A:1-36) DNA 58.3 2.5 0.00018 20.1 2.1 24 10-33 6-33 (36) 60 d1s24a_ g.41.5.1 (A:) Two-iron 58.0 3 0.00022 19.6 2.5 27 8-35 3-46 (56) 61 d1wd2a_ g.44.1.1 (A:) Ariadne- 58.0 1.8 0.00013 21.0 1.3 28 10-37 7-37 (60) 62 d1yuja_ g.37.1.1 (A:) GAGA fac 56.1 1.8 0.00013 21.0 1.1 17 22-38 20-36 (54) 63 d2cona1 g.41.15.1 (A:8-73) RNA 56.0 2.9 0.00021 19.7 2.1 22 11-34 10-31 (66) 64 d1ma3a_ c.31.1.5 (A:) AF0112, 55.8 2.7 0.0002 19.9 1.9 31 10-40 124-162 (252) 65 d2qam01 g.41.8.5 (0:1-56) Ribo 53.6 2.6 0.00019 20.1 1.5 19 11-34 29-47 (56) 66 d1bora_ g.44.1.1 (A:) Acute pr 50.8 3.1 0.00022 19.6 1.6 29 9-42 6-34 (56) 67 d1brfa_ g.41.5.1 (A:) Rubredox 49.8 4.3 0.00031 18.7 2.2 26 9-35 2-44 (53) 68 d1wfla_ g.80.1.1 (A:) Zinc fin 49.4 4.3 0.00032 18.7 2.1 26 8-37 24-49 (74) 69 d1ywsa1 g.41.17.1 (A:1-82) Dip 48.9 2.5 0.00018 20.1 0.8 32 10-42 23-64 (82) 70 d1t1ha_ g.44.1.2 (A:) E3 ubiqu 47.7 3.4 0.00025 19.3 1.4 36 3-43 2-37 (78) 71 d1fbva4 g.44.1.1 (A:356-434) C 46.1 4.2 0.00031 18.7 1.7 29 10-43 24-52 (79) 72 d2jzaa1 b.33.1.3 (A:1-122) NAD 45.9 8.1 0.00059 17.0 3.1 33 8-40 42-81 (122) 73 d1y0jb1 g.37.1.2 (B:1-36) U-sh 45.5 3.1 0.00022 19.6 0.9 13 26-38 8-20 (36) 74 d1iroa_ g.41.5.1 (A:) Rubredox 44.2 5.8 0.00043 17.9 2.1 26 9-35 3-45 (53) 75 d1x3za1 d.3.1.4 (A:8-327) Pept 43.9 5.6 0.00041 18.0 2.0 46 5-50 115-185 (320) 76 d1vm9a_ b.33.1.1 (A:) Toluene- 43.4 5.3 0.00039 18.1 1.8 33 8-40 40-74 (109) 77 d1wgea1 g.41.17.1 (A:8-77) Del 43.0 3.9 0.00029 18.9 1.1 26 10-36 24-55 (70) 78 d2ct1a2 g.37.1.1 (A:8-43) Tran 42.8 4.6 0.00034 18.5 1.4 20 23-42 5-24 (36) 79 d2cota2 g.37.1.1 (A:7-44) Zinc 42.7 4.6 0.00034 18.5 1.4 18 23-40 9-26 (38) 80 d1wfha_ g.80.1.1 (A:) Zinc fin 42.4 7.5 0.00054 17.2 2.5 27 7-37 13-39 (64) 81 d2f4ma1 d.3.1.4 (A:164-450) Pe 41.7 7.6 0.00055 17.2 2.4 45 5-49 77-143 (287) 82 d2aqaa1 g.41.16.1 (A:2-58) H/a 41.7 5.3 0.00039 18.1 1.6 18 14-35 8-25 (57) 83 d2dlqa2 g.37.1.1 (A:35-62) GLI 40.6 3.8 0.00028 19.0 0.7 11 26-36 1-11 (28) 84 d2adra1 g.37.1.1 (A:102-130) A 40.5 4.4 0.00032 18.6 1.1 17 25-41 1-17 (29) 85 d2c2la2 g.44.1.2 (A:225-304) S 39.9 7 0.00051 17.4 2.0 29 10-43 8-36 (80) 86 d1v54f_ g.41.5.3 (F:) Cytochro 38.7 7.9 0.00058 17.1 2.1 23 16-38 68-91 (98) 87 d1wjpa2 g.37.1.1 (A:43-66) Zin 38.3 4.4 0.00032 18.6 0.8 10 27-36 1-10 (26) 88 d1srka_ g.37.1.1 (A:) Zinc fin 37.7 6.4 0.00046 17.6 1.5 20 23-42 4-23 (35) 89 d1p91a_ c.66.1.33 (A:) rRNA me 37.3 6.2 0.00045 17.7 1.4 25 11-37 3-27 (268) 90 d1a1ia2 g.37.1.1 (A:132-159) Z 37.1 5.9 0.00043 17.8 1.3 15 25-39 2-16 (28) 91 d1rmda2 g.44.1.1 (A:1-86) V(D) 36.9 8.2 0.00059 17.0 1.9 27 10-41 24-50 (86) 92 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 36.6 10 0.00076 16.3 2.4 25 10-37 26-50 (85) 93 d1x6ea1 g.37.1.1 (A:8-40) Zinc 36.1 7.1 0.00051 17.4 1.5 18 23-40 4-21 (33) 94 d1p7aa_ g.37.1.1 (A:) Kruppel- 35.9 6.9 0.0005 17.4 1.4 19 23-41 8-26 (37) 95 d1x68a2 g.39.1.3 (A:37-70) Fou 35.8 4.5 0.00033 18.6 0.5 25 12-37 2-31 (34) 96 d2dsxa1 g.41.5.1 (A:1-52) Rubr 35.7 9.5 0.00069 16.6 2.1 18 17-35 28-45 (52) 97 d1sp1a_ g.37.1.1 (A:) Transcri 35.4 5.8 0.00042 17.9 1.0 15 25-39 1-15 (29) 98 d1x4la2 g.39.1.3 (A:37-66) Fou 35.3 1.6 0.00012 21.3 -1.9 24 12-35 2-29 (30) 99 d1x6ea2 g.37.1.1 (A:41-66) Zin 35.1 6.7 0.00049 17.5 1.3 16 25-40 1-16 (26) 100 d1vqo11 g.41.8.2 (1:1-56) Ribo 34.5 10 0.00074 16.4 2.1 23 10-34 17-39 (56) 101 d1dx8a_ g.41.5.1 (A:) Rubredox 34.4 10 0.00076 16.3 2.2 27 8-35 6-49 (70) 102 d1fqta_ b.33.1.1 (A:) Rieske-t 33.9 8.1 0.00059 17.0 1.5 31 10-40 41-74 (109) 103 d1twfi2 g.41.3.1 (I:50-121) RB 31.8 8.4 0.00061 16.9 1.3 33 8-40 22-65 (72) 104 d3c0da1 b.33.1.3 (A:4-111) NAD 31.4 10 0.00074 16.4 1.7 32 9-40 41-79 (108) 105 d1wfpa_ g.80.1.1 (A:) Zinc fin 31.4 15 0.0011 15.3 2.6 26 8-37 24-49 (74) 106 d1a1ia3 g.37.1.1 (A:160-187) Z 30.8 8 0.00058 17.0 1.1 14 25-38 2-15 (28) 107 d1ubdc2 g.37.1.1 (C:323-350) Y 30.8 7.6 0.00056 17.2 1.0 16 27-42 3-18 (28) 108 d1x6ha2 g.37.1.1 (A:8-43) Tran 30.7 9.7 0.0007 16.5 1.5 20 23-42 5-24 (36) 109 d1exka_ g.54.1.1 (A:) Cysteine 30.7 8.3 0.00061 16.9 1.2 30 5-34 7-36 (79) 110 d1jm7a_ g.44.1.1 (A:) brca1 RI 30.2 3.7 0.00027 19.1 -0.7 24 11-39 23-46 (103) 111 d1hxra_ b.88.1.1 (A:) RabGEF M 30.1 8.7 0.00064 16.8 1.2 15 22-36 8-22 (115) 112 d2ct1a1 g.37.1.1 (A:44-71) Tra 29.7 8.3 0.00061 16.9 1.0 11 28-38 4-14 (28) 113 d2jnea1 g.41.18.1 (A:1-71) Hyp 29.0 8 0.00058 17.0 0.8 29 5-37 13-42 (71) 114 d2gyc11 g.41.8.6 (1:1-52) Ribo 29.0 16 0.0012 15.2 2.4 27 8-34 8-44 (52) 115 d1bboa1 g.37.1.1 (A:1-28) Enha 28.9 7.6 0.00055 17.2 0.7 16 28-43 3-19 (28) 116 d2pw4a1 d.380.1.1 (A:1-184) Un 28.1 14 0.001 15.6 1.9 32 3-34 138-174 (184) 117 d2j9ub1 g.41.11.1 (B:115-161) 28.1 18 0.0013 14.9 2.8 35 10-44 4-44 (47) 118 d1bhia_ g.37.1.1 (A:) Transact 28.0 11 0.00079 16.2 1.4 19 24-42 4-24 (38) 119 d2csha2 g.37.1.1 (A:61-104) Zi 27.8 9.9 0.00072 16.5 1.1 12 25-36 4-15 (44) 120 d1x6ha1 g.37.1.1 (A:44-80) Tra 27.7 10 0.00073 16.4 1.1 14 26-39 4-17 (37) 121 d1vyxa_ g.44.1.3 (A:) IE1B pro 25.4 11 0.00079 16.2 1.0 28 11-38 8-35 (60) 122 d1weoa_ g.44.1.1 (A:) Cellulos 25.4 13 0.00094 15.7 1.4 11 26-36 58-68 (93) 123 d2ea9a1 d.110.8.1 (A:8-110) Hy 24.8 6.8 0.0005 17.4 -0.1 18 1-18 1-19 (103) 124 d2bmoa1 b.33.1.2 (A:3-152) Nit 24.5 17 0.0013 15.0 1.9 30 11-40 76-108 (150) 125 d2jo6a1 b.33.1.3 (A:1-108) NAD 24.3 13 0.00096 15.7 1.2 33 8-40 42-81 (108) 126 d1ps9a3 c.4.1.1 (A:331-465,A:6 24.2 8.8 0.00064 16.8 0.3 29 10-38 2-35 (179) 127 d1xg8a_ c.47.1.17 (A:) Hypothe 24.0 7.7 0.00056 17.1 0.0 10 6-15 13-22 (111) 128 d1sp2a_ g.37.1.1 (A:) Transcri 23.8 13 0.00093 15.8 1.1 18 25-42 1-20 (31) 129 d1se0a_ g.52.1.1 (A:) BIR doma 23.6 17 0.0012 15.1 1.7 19 18-36 30-49 (97) 130 d1ubdc3 g.37.1.1 (C:351-380) Y 23.0 14 0.001 15.5 1.2 18 25-42 1-20 (30) 131 d2glia3 g.37.1.1 (A:168-197) F 23.0 13 0.00094 15.8 1.0 18 25-42 1-20 (30) 132 d1iyma_ g.44.1.1 (A:) EL5 RING 22.6 22 0.0016 14.4 2.1 32 11-43 7-38 (55) 133 d1b8ta3 g.39.1.3 (A:101-143) C 22.4 18 0.0013 14.9 1.6 21 4-24 10-30 (43) 134 d1ur6b_ g.44.1.1 (B:) Not-4 N- 22.3 15 0.0011 15.3 1.3 27 12-39 3-29 (52) 135 d1cl4a_ g.40.1.1 (A:) Nucleoca 22.0 14 0.001 15.5 1.0 12 26-37 2-13 (32) 136 d1ubdc4 g.37.1.1 (C:381-408) Y 21.8 14 0.001 15.5 1.0 16 25-40 1-18 (28) 137 d1lv3a_ g.39.1.9 (A:) Hypothet 21.5 19 0.0014 14.8 1.6 10 27-36 7-16 (65) 138 d2pu9a1 g.36.1.1 (A:8-115) Fer 21.4 7 0.00051 17.4 -0.6 34 5-42 42-90 (108) 139 d1i3oe_ g.52.1.1 (E:) BIR doma 21.2 15 0.0011 15.4 1.0 18 19-36 63-81 (111) 140 d1wfea_ g.80.1.1 (A:) AN1-type 21.1 24 0.0018 14.1 2.7 27 11-39 27-53 (86) 141 d1x61a2 g.39.1.3 (A:35-66) Thy 20.8 23 0.0017 14.2 1.9 15 11-25 1-20 (32) 142 d1chca_ g.44.1.1 (A:) Immediat 20.3 20 0.0015 14.6 1.5 27 11-41 7-33 (68) 143 d2de6a1 b.33.1.2 (A:1-142) Ter 20.3 21 0.0016 14.4 1.7 30 10-39 67-100 (142) 144 d2qfaa1 g.52.1.1 (A:5-141) Ant 20.3 19 0.0014 14.7 1.4 13 24-36 48-60 (137) 145 d1njqa_ g.37.1.3 (A:) SUPERMAN 20.3 18 0.0013 14.9 1.3 16 27-42 6-21 (37) No 1 >d2akla2 g.41.3.5 (A:3-40) Hypothetical protein PA0128, N-terminal domain {Pseudomonas aeruginosa [TaxId: 287]} Probab=94.78 E-value=0.0056 Score=36.33 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=26.8 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHH Q ss_conf 1178888744214888722778987153233 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~ 40 (129) --||.|+.-|-=-...-.|||.||.||.+.. T Consensus 4 P~CP~C~seytYedg~l~vCPeC~hEW~~~~ 34 (38) T d2akla2 4 PPCPQCNSEYTYEDGALLVCPECAHEWSPNE 34 (38) T ss_dssp CCCTTTCCCCCEECSSSEEETTTTEEECTTT T ss_pred CCCCCCCCCCEECCCCEEECCCCCCCCCCCC T ss_conf 8688789803573799978975557478543 No 2 >d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus [TaxId: 274]} Probab=94.00 E-value=0.0099 Score=34.83 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=21.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 178888744214888722778987153233101 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) -| .|| ||+=..-.-++|+.||.|+......+ T Consensus 56 eC-~CG-Kyk~~~~~g~vC~~CgVevt~s~vRR 86 (1504) T d1smyd_ 56 EC-ACG-KYKRQRFEGKVCERCGVEVTKSIVRR 86 (1504) T ss_dssp SC-SSC-SCCSSSSSSCCCSSSCCCCSSTHHHH T ss_pred EE-ECC-CCCCCCCCCEECCCCCCEECCCCHHH T ss_conf 67-287-76652519977799986877301676 No 3 >d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, AccD {Escherichia coli [TaxId: 562]} Probab=93.94 E-value=0.0064 Score=35.97 Aligned_cols=29 Identities=21% Similarity=0.552 Sum_probs=23.1 Q ss_pred CCCCCCCCEEE--ECCCCCCCCCCCCCEECH Q ss_conf 11788887442--148887227789871532 Q gi|254780459|r 10 RTCPDTGKRFY--DLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~KFY--Dlnk~PiiCP~CG~e~~~ 38 (129) +.||+|+...| ||.+.==|||+||.-|.+ T Consensus 3 ~~C~~C~~~~~~~~l~~~~~vC~~C~~h~~l 33 (263) T d2f9yb1 3 TKCDSCGQVLYRAELERNLEVCPKCDHHMRM 33 (263) T ss_dssp ECCTTTCCCEETTHHHHTTTBCTTTCCBCCC T ss_pred CCCCCCCCEEEHHHHHHHCCCCCCCCCCCCC T ss_conf 7178776502699999858899399899876 No 4 >d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=93.63 E-value=0.018 Score=33.26 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.1 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 2278311788887442148887227789871 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) |.++..+|+.||--+.+ .-|-.||-||+- T Consensus 1 E~~~~~~C~vCG~i~~g--~~P~~CPvCg~~ 29 (37) T d1nnqa2 1 EIKKVYICPICGYTAVD--EAPEYCPVCGAP 29 (37) T ss_dssp CCSCEEECTTTCCEEES--CCCSBCTTTCCB T ss_pred CCCCEEECCCCCCEECC--CCCCCCCCCCCC T ss_conf 97767989989988618--778848889985 No 5 >d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=91.67 E-value=0.038 Score=31.23 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.7 Q ss_pred CCCCCCCCCCE--EEECCCCCCCCCCCCCEECH Q ss_conf 83117888874--42148887227789871532 Q gi|254780459|r 8 TKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 8 ~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~ 38 (129) .+|+||.||.+ .+|..+--++|-.||..+.- T Consensus 4 ~~~~Cp~Cgs~~iv~D~~~Ge~vC~~CG~Viee 36 (50) T d1pfta_ 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50) T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCC T ss_pred CCCCCCCCCCCCEEEECCCCEEECCCCCCEECC T ss_conf 553484887983788878790850049869252 No 6 >d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Probab=91.63 E-value=0.053 Score=30.38 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=23.6 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 78311788887442148887227789871 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) ++..+|+.||--+.. .-|-.||-||+- T Consensus 3 ~~~~vC~vCGyi~~g--~~Pe~CPvCg~~ 29 (36) T d1yuza2 3 DKFHLCPICGYIHKG--EDFEKCPICFRP 29 (36) T ss_dssp CCEEECSSSCCEEES--SCCSBCTTTCCB T ss_pred CCEEECCCCCCEEEC--CCCCCCCCCCCC T ss_conf 888978989998628--888848889986 No 7 >d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]} Probab=91.53 E-value=0.058 Score=30.14 Aligned_cols=28 Identities=14% Similarity=0.326 Sum_probs=23.0 Q ss_pred CCCCCCCEE--------EECCCCCCCCCCCCCEECH Q ss_conf 178888744--------2148887227789871532 Q gi|254780459|r 11 TCPDTGKRF--------YDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 11 ~C~~Cg~KF--------YDlnk~PiiCP~CG~e~~~ 38 (129) +||.|+++| +|+...-.+|-+|++++.. T Consensus 16 ~Cp~C~~~ys~Lda~~L~d~~~~~F~C~~C~~el~e 51 (62) T d1vd4a_ 16 KCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62) T ss_dssp ECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE T ss_pred ECCCCCCCCCHHHHHHHCCCCCCEEEECCCCCEEEC T ss_conf 889988880554387736967893973588999753 No 8 >d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]} Probab=91.16 E-value=0.042 Score=30.99 Aligned_cols=27 Identities=19% Similarity=0.292 Sum_probs=22.9 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 178888744214888722778987153 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .|-+||--|=+--|.|=-||.|..+|. T Consensus 69 ~CrkCGfvFr~~~kkPSRCP~CKSE~I 95 (105) T d2gmga1 69 QCRKCGFVFKAEINIPSRCPKCKSEWI 95 (105) T ss_dssp BBTTTCCBCCCCSSCCSSCSSSCCCCB T ss_pred HHHHCCCEECCCCCCCCCCCCCCCCCC T ss_conf 152367760566899998998887263 No 9 >d1akya2 g.41.2.1 (A:131-168) Microbial and mitochondrial ADK, insert "zinc finger" domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=90.95 E-value=0.061 Score=30.01 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=21.9 Q ss_pred CCCCCCCCCEEEECCCCC---CCCCCCCCEE Q ss_conf 311788887442148887---2277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQV---IVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~P---iiCP~CG~e~ 36 (129) -|+|++||+-|-.+.+.| =+|-.||.++ T Consensus 2 Rr~C~~cG~~Yh~~~~ppk~~g~CD~cg~~L 32 (38) T d1akya2 2 RLIHPASGRSYHKIFNPPKEDMKDDVTGEAL 32 (38) T ss_dssp EEECTTTCCEEETTTBCCSSTTBCTTTCCBC T ss_pred CCCCCCCCCHHHHHCCCCCCCCCCCCCCCEE T ss_conf 6688474664544235867678457889985 No 10 >d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=89.70 E-value=0.088 Score=29.01 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=26.9 Q ss_pred CCCCCCCCCCCE--EEECCCCCCCCCCCCCEECHHH Q ss_conf 783117888874--4214888722778987153233 Q gi|254780459|r 7 GTKRTCPDTGKR--FYDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 7 G~KR~C~~Cg~K--FYDlnk~PiiCP~CG~e~~~~~ 40 (129) =.|-.||.||.+ .||..+--++|-.||..+.-.. T Consensus 9 ~~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~Vlee~~ 44 (58) T d1dl6a_ 9 LPRVTCPNHPDAILVEDYRAGDMICPECGLVVGDRV 44 (58) T ss_dssp CSCCSBTTBSSSCCEECSSSCCEECTTTCCEECCSC T ss_pred CCCCCCCCCCCCCEEEECCCCCEECCCCCCEECCCC T ss_conf 566689799798777887888285035998905413 No 11 >d2ey4e1 g.41.16.1 (E:4-55) Ribosome biogenesis protein Nop10 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=89.04 E-value=0.092 Score=28.90 Aligned_cols=21 Identities=38% Similarity=0.896 Sum_probs=18.0 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 11788887442148887227789871 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) |.|++||. |-|.+ +||.||.. T Consensus 3 rkC~~C~~--YTL~~---~CP~CG~~ 23 (52) T d2ey4e1 3 RKCPKCGR--YTLKE---VCPVCGEK 23 (52) T ss_dssp EECTTTCC--EESSS---BCTTTCCB T ss_pred CCCCCCCC--EECCC---CCCCCCCC T ss_conf 30774666--44445---28678885 No 12 >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=86.51 E-value=0.22 Score=26.55 Aligned_cols=35 Identities=11% Similarity=0.144 Sum_probs=28.7 Q ss_pred CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 522278311788887442148887227789871532 Q gi|254780459|r 3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) .|.|=-=+.|+.|+++|= |-+..-.|..||..|=. T Consensus 7 ~p~W~~~~~C~~C~~~F~-~~~rrhhCr~CG~~~C~ 41 (72) T d1dvpa2 7 APNWADGRVCHRCRVEFT-FTNRKHHCRNCGQVFCG 41 (72) T ss_dssp CCCCCCCSBCTTTCCBCC-SSSCCEECTTTCCEECS T ss_pred CCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCEECH T ss_conf 998976874346899005-75444244216896491 No 13 >d2apob1 g.41.16.1 (B:403-457) Ribosome biogenesis protein Nop10 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=84.83 E-value=0.22 Score=26.57 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=18.3 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 311788887442148887227789871 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) =|.|++||. |-|.+ +||.||.. T Consensus 4 lrkC~~C~~--YTL~~---~CP~CG~~ 25 (55) T d2apob1 4 MKKCPKCGL--YTLKE---ICPKCGEK 25 (55) T ss_dssp CEECTTTCC--EESSS---BCSSSCSB T ss_pred EEECCCCCC--EECCC---CCCCCCCC T ss_conf 234873665--43345---27678886 No 14 >d2j0151 g.41.8.5 (5:2-60) Ribosomal protein L32p {Thermus thermophilus [TaxId: 274]} Probab=84.74 E-value=0.23 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=17.8 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 31178888744214888722778987 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) =..|++||. +.+.=-+||+||. T Consensus 29 l~~C~~CG~----~~~pHrvC~~CG~ 50 (59) T d2j0151 29 LVPCPECKA----MKPPHTVCPECGY 50 (59) T ss_dssp CBCCSSSSS----CBCTTCBCTTTCC T ss_pred EEECCCCCC----CCCCEEECCCCCE T ss_conf 468899998----1066068798980 No 15 >d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]} Probab=84.61 E-value=0.19 Score=26.96 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=24.9 Q ss_pred CCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 1178888744-21488872277898715323 Q gi|254780459|r 10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) -.||.|+.++ |+-++.-++|+.||..|++. T Consensus 8 L~CP~ck~~L~~~~~~~~Lvc~~~~l~YPI~ 38 (59) T d2hf1a1 8 LVCPLCKGPLVFDKSKDELICKGDRLAFPIK 38 (59) T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEEEEE T ss_pred HCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 3587989863695889989638768445441 No 16 >d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]} Probab=84.53 E-value=0.32 Score=25.60 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=27.6 Q ss_pred CHHHCCCCCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 52227831178888744-21488872277898715323 Q gi|254780459|r 3 KPELGTKRTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 3 K~elG~KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) +++|=-=-.||.|+.++ |+-.+.-++|+.||..|++. T Consensus 4 ~~~LL~iL~CP~ck~~L~~~~~~~~Lvc~~~~~~YPI~ 41 (59) T d2jnya1 4 DPQLLEVLACPKDKGPLRYLESEQLLVNERLNLAYRID 41 (59) T ss_dssp CGGGTCCCBCTTTCCBCEEETTTTEEEETTTTEEEEEE T ss_pred CHHHHHHHCCCCCCCEEEEECCCCEEECCCCCCCCCCC T ss_conf 97999871587999870796889989748648545252 No 17 >d2gnra1 b.40.4.15 (A:8-144) Hypothetical protein SSO2064 {Sulfolobus solfataricus [TaxId: 2287]} Probab=84.35 E-value=0.21 Score=26.71 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=18.3 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 11788887442148887227789871 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) +.|.+||.-||=- .+ .||.||.. T Consensus 40 ~~C~~CG~v~~Pp--r~-~Cp~C~s~ 62 (137) T d2gnra1 40 SKCSKCGRIFVPA--RS-YCEHCFVK 62 (137) T ss_dssp EECTTTCCEEESC--CS-EETTTTEE T ss_pred EECCCCCCEEECC--CC-CCCCCCCC T ss_conf 9818999888575--04-67998998 No 18 >d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo sapiens) [TaxId: 9606]} Probab=84.33 E-value=0.33 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.302 Sum_probs=21.1 Q ss_pred CCCCCCCCCEE-EECCCCCCCCCCCCCEE Q ss_conf 31178888744-21488872277898715 Q gi|254780459|r 9 KRTCPDTGKRF-YDLNKQVIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KF-YDlnk~PiiCP~CG~e~ 36 (129) -|-||.||.-+ ++-+-.-++||.||..| T Consensus 18 ~k~CP~C~~~~~~~~~~~~~~C~~C~~~f 46 (73) T d2ct7a1 18 FLWCAQCSFGFIYEREQLEATCPQCHQTF 46 (73) T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEE T ss_pred CCCCCCCCCEEEECCCCCEEECCCCCCEE T ss_conf 88999999976877999987869989917 No 19 >d2dkta1 g.89.1.1 (A:8-81) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=84.25 E-value=0.26 Score=26.18 Aligned_cols=25 Identities=8% Similarity=0.042 Sum_probs=11.7 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 83117888874421488872277898715 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) .+-+|..||.++ +.|..||+||..| T Consensus 50 ~~l~CH~Cg~~~----~~~~~C~~Cgs~F 74 (74) T d2dkta1 50 KEVQCINCEKLQ----HAQQTCEDCSTLF 74 (74) T ss_dssp CCEEESSSCCEE----CSCSBCSSSCCBS T ss_pred CEEEECCCCCCC----CCCCCCCCCCCCC T ss_conf 879835679744----3788487878879 No 20 >d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]} Probab=84.03 E-value=0.18 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.335 Sum_probs=24.5 Q ss_pred CCCCCCCCEE-EECCCCCCCCCCCCCEECHH Q ss_conf 1178888744-21488872277898715323 Q gi|254780459|r 10 RTCPDTGKRF-YDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KF-YDlnk~PiiCP~CG~e~~~~ 39 (129) -+||.|+.++ |+-++.-++|+.||-.|++. T Consensus 7 L~CP~ck~~L~~~~~~~~Lvc~~~~laYPI~ 37 (59) T d2pk7a1 7 LACPICKGPLKLSADKTELISKGAGLAYPIR 37 (59) T ss_dssp CCCTTTCCCCEECTTSSEEEETTTTEEEEEE T ss_pred EECCCCCCCCEEECCCCEEECCCCCCCCCCC T ss_conf 4787989865694889989648758554240 No 21 >d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]} Probab=83.64 E-value=0.3 Score=25.73 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=20.9 Q ss_pred CCCCCCCCCEEEECCCC---CCCCCCCCCEE Q ss_conf 31178888744214888---72277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQ---VIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~ 36 (129) -|+|++||+-|=...+. +=+|=.||.+. T Consensus 2 R~~C~~CG~~Yh~~~~pPk~~g~CD~cg~~L 32 (35) T d1s3ga2 2 RRICKVCGTSYHLLFNPPQVEGKCDKDGGEL 32 (35) T ss_dssp EEEETTTCCEEETTTBCCSBTTBCTTTCCBE T ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC T ss_conf 6688574751145667988888367989995 No 22 >d2ak3a2 g.41.2.1 (A:125-161) Microbial and mitochondrial ADK, insert "zinc finger" domain {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Probab=83.52 E-value=0.25 Score=26.19 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=21.5 Q ss_pred CCCCCCCCCEEEECCC---CCCCCCCCCCEE Q ss_conf 3117888874421488---872277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNK---QVIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk---~PiiCP~CG~e~ 36 (129) -|+||+||+-|=-+.+ .+-+|=.||.++ T Consensus 2 R~vc~~cG~~Yh~~~~pPk~~g~CD~cg~~L 32 (37) T d2ak3a2 2 RWIHPGSGRVYNIEFNPPKTMGIDDLTGEPL 32 (37) T ss_dssp EEEETTTTEEEETTTBCCSSTTBCTTTCCBC T ss_pred CEEECCCCCHHHHCCCCCCCCCCCCCCCCCC T ss_conf 5051775870210457744668864779827 No 23 >d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]} Probab=83.14 E-value=0.31 Score=25.71 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=22.6 Q ss_pred CCCCCCCCCC-EEEECCCCCCCCCCCCC-EE Q ss_conf 8311788887-44214888722778987-15 Q gi|254780459|r 8 TKRTCPDTGK-RFYDLNKQVIVSPYTQN-SW 36 (129) Q Consensus 8 ~KR~C~~Cg~-KFYDlnk~PiiCP~CG~-e~ 36 (129) ++|.||.||. -|-=-.++-..|=+||- +| T Consensus 17 ~~k~CP~CG~GvFmA~H~dR~~CGKCgyTef 47 (55) T d2k4xa1 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTEF 47 (55) T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCEE T ss_pred ECCCCCCCCCCEEEEECCCCCCCCCCCCCEE T ss_conf 2474959999577412589766347756179 No 24 >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=83.01 E-value=0.29 Score=25.88 Aligned_cols=28 Identities=14% Similarity=0.150 Sum_probs=22.9 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 1178888744214888722778987153 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +.|+.|++.|.=|.+....|..||..|= T Consensus 49 ~~C~~C~~~f~~~~~~~~~C~~C~~~~C 76 (124) T d1zbdb_ 49 NRCILCGEQLGMLGSASVVCEDCKKNVC 76 (124) T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEE T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 8583459733478999886724786011 No 25 >d1zina2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus stearothermophilus [TaxId: 1422]} Probab=82.64 E-value=0.35 Score=25.34 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=20.9 Q ss_pred CCCCCCCCCEEEECCCC---CCCCCCCCCEE Q ss_conf 31178888744214888---72277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQ---VIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~ 36 (129) -|+|++||+-|-...+. +=+|=.||.+. T Consensus 2 Rr~C~~CG~~Yh~~~~pPk~~g~CD~cG~~L 32 (35) T d1zina2 2 RRICRNCGATYHLIFHPPAKPGVCDKCGGEL 32 (35) T ss_dssp EEEETTTCCEEETTTBCCSSTTBCTTTCCBE T ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCCCCC T ss_conf 6588676752126567988788477989995 No 26 >d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=82.45 E-value=0.36 Score=25.27 Aligned_cols=28 Identities=7% Similarity=-0.009 Sum_probs=21.1 Q ss_pred CCCCCCCCEEEEC-----CCCCCCCCCCCC-EEC Q ss_conf 1178888744214-----888722778987-153 Q gi|254780459|r 10 RTCPDTGKRFYDL-----NKQVIVSPYTQN-SWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDl-----nk~PiiCP~CG~-e~~ 37 (129) -.|+.||..+|-. -+.|..||.||. .|. T Consensus 127 ~~C~~C~~~~~~~~~~~~~~~p~~C~~C~~~~f~ 160 (239) T d1ltla_ 127 FECRGCMRHHAVTQSTNMITEPSLCSECGGRSFR 160 (239) T ss_dssp EEETTTCCEEEEECSSSSCCCCSCCTTTCCCCEE T ss_pred EECCCCCCEEEEEECCCEECCCCCCCCCCCCCCE T ss_conf 9988888569997169715377557777996518 No 27 >d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=81.74 E-value=0.38 Score=25.14 Aligned_cols=32 Identities=6% Similarity=-0.088 Sum_probs=21.6 Q ss_pred CCCCCCCCCEEEEC----CCCCCCCCCCCCEECHHH Q ss_conf 31178888744214----888722778987153233 Q gi|254780459|r 9 KRTCPDTGKRFYDL----NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~KFYDl----nk~PiiCP~CG~e~~~~~ 40 (129) +-.|+.|+.+|.=- -.....||.||...-|.. T Consensus 121 ~~~C~~c~~~~~~~~~~~~~~~p~C~~Cgg~lrP~V 156 (249) T d1m2ka_ 121 VVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGV 156 (249) T ss_dssp EEEESSSSCEEECSSCCCSSSCCBCSSSSSBEEEEE T ss_pred HEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCCE T ss_conf 301034798200011233789997645899711244 No 28 >d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Probab=81.56 E-value=0.28 Score=25.93 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=22.0 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCE Q ss_conf 78311788887442148887227789871 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e 35 (129) .++-+|.+||--+.- ..-|-+||.||+- T Consensus 6 ~~~W~C~~CGyi~~g-~~aP~~CPvC~~p 33 (44) T d1lkoa2 6 ATKWRCRNCGYVHEG-TGAPELCPACAHP 33 (44) T ss_dssp EEEEEETTTCCEEEE-EECCSBCTTTCCB T ss_pred CEEEECCCCCCEEEC-CCCCCCCCCCCCC T ss_conf 748883889958777-8798768799885 No 29 >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} Probab=81.18 E-value=0.46 Score=24.64 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=24.3 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 7831178888744214888722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) |..-.|..|+++|= |-+..-.|..||..|= T Consensus 7 ~~~s~C~~C~~~Fs-~~~rrhhCr~CG~vfC 36 (88) T d1wfka_ 7 GMESRCYGCAVKFT-LFKKEYGCKNCGRAFC 36 (88) T ss_dssp CCCSBCTTTCCBCC-SSSCEEECSSSCCEEE T ss_pred CCCCCCCCCCCHHC-CCCCCCCCCCCCHHHC T ss_conf 56686935195013-5433533411195458 No 30 >d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]} Probab=80.46 E-value=0.34 Score=25.44 Aligned_cols=25 Identities=12% Similarity=0.157 Sum_probs=15.3 Q ss_pred CCCCCCCE-EEECCCCCCCCCCCCCE Q ss_conf 17888874-42148887227789871 Q gi|254780459|r 11 TCPDTGKR-FYDLNKQVIVSPYTQNS 35 (129) Q Consensus 11 ~C~~Cg~K-FYDlnk~PiiCP~CG~e 35 (129) +|++||.+ -|-..+.-=.||.||.. T Consensus 517 ~C~~Cg~~~~~~~~~~~~~CP~CGs~ 542 (561) T d1hk8a_ 517 KCFTCGSTHEMTPTENGFVCSICGET 542 (561) T ss_dssp EETTTCCCSCCEECSSSEECSSSCCC T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 47788875864357778529389899 No 31 >d2zjrz1 g.41.8.5 (Z:2-59) Ribosomal protein L32p {Deinococcus radiodurans [TaxId: 1299]} Probab=79.90 E-value=0.34 Score=25.45 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=16.5 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 31178888744214888722778987 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) =.+||+||. +.+.=-+||+||. T Consensus 29 l~~C~~CG~----~~lpHrvC~~CG~ 50 (58) T d2zjrz1 29 LTECPQCHG----KKLSHHICPNCGY 50 (58) T ss_dssp CEECTTTCC----EECTTBCCTTTCB T ss_pred EEECCCCCC----CCCCEEECCCCCC T ss_conf 147899999----7566056798883 No 32 >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} Probab=79.56 E-value=0.5 Score=24.41 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=22.4 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 1178888744214888722778987153 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ..|+.|+++|.=|+|. -.|-.||..|= T Consensus 9 ~~C~~C~~~F~~~~rr-HHCR~CG~v~C 35 (64) T d1joca1 9 QNCMACGKGFSVTVRR-HHCRQCGNIFC 35 (64) T ss_dssp CBCTTTCCBCCSSSCC-EECTTTCCEEC T ss_pred CCCCCCCCCCCCCCCC-CCHHHHCCEEC T ss_conf 9683759743687655-05054198415 No 33 >d1e4va2 g.41.2.1 (A:122-156) Microbial and mitochondrial ADK, insert "zinc finger" domain {Escherichia coli [TaxId: 562]} Probab=79.49 E-value=0.41 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.031 Sum_probs=20.5 Q ss_pred CCCCCCCCCEEEECCCC---CCCCCCCCCEE Q ss_conf 31178888744214888---72277898715 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQ---VIVSPYTQNSW 36 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~ 36 (129) -|+||+||.-|=...+- +=+|=.||.+. T Consensus 2 Rr~c~~cG~~Yh~~~~PPk~~g~CD~cg~~L 32 (35) T d1e4va2 2 RRVHAPSGRVYHVKFNPPKVEGKDDVTGEEL 32 (35) T ss_dssp EEEETTTTEEEETTTBCCSSTTBCTTTCCBC T ss_pred CCCCCCCCCHHHHCCCCCCCCCCCCCCCCEE T ss_conf 6677686772320047644588126778972 No 34 >d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=78.82 E-value=0.79 Score=23.19 Aligned_cols=29 Identities=14% Similarity=0.244 Sum_probs=23.5 Q ss_pred CCCCCCCCCCEEEECCC--CCCCCCCCCCEE Q ss_conf 83117888874421488--872277898715 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK--QVIVSPYTQNSW 36 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk--~PiiCP~CG~e~ 36 (129) .|-.||.|+.-=-=|.+ +++.|..||+.+ T Consensus 6 ~~VkC~~C~n~~ivFsha~t~V~C~~Cg~~L 36 (58) T d1qxfa_ 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTV 36 (58) T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEE T ss_pred EEEECCCCCCEEEEEECCCEEEECCCCCCEE T ss_conf 8959999998678982375489814658788 No 35 >d1rqga3 g.41.1.1 (A:139-173) Methionyl-tRNA synthetase (MetRS), Zn-domain {Pyrococcus abyssi [TaxId: 29292]} Probab=77.60 E-value=0.66 Score=23.67 Aligned_cols=32 Identities=16% Similarity=0.096 Sum_probs=23.9 Q ss_pred CCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCC Q ss_conf 3117888874-421488872277898715323310123 Q gi|254780459|r 9 KRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPT 45 (129) Q Consensus 9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~ 45 (129) +-+||.||.. -| =--|-+||+.|.|..|+.++ T Consensus 2 ~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLinP~ 34 (35) T d1rqga3 2 IGTCPYCGAEDQK-----GDQCEVCGRPLTPEILINPR 34 (35) T ss_dssp CSBCSSSCCSCCC-----TTTCSSSCCCCCTTSSBSCB T ss_pred EEECCCCCCCCCC-----CCCHHHCCCCCCHHHHCCCC T ss_conf 6779799897540-----76234567846888940788 No 36 >d1pfva3 g.41.1.1 (A:141-175) Methionyl-tRNA synthetase (MetRS), Zn-domain {Escherichia coli [TaxId: 562]} Probab=77.33 E-value=0.39 Score=25.06 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=24.5 Q ss_pred CCCCCCCCCE-EEECCCCCCCCCCCCCEECHHHHHCCC Q ss_conf 3117888874-421488872277898715323310123 Q gi|254780459|r 9 KRTCPDTGKR-FYDLNKQVIVSPYTQNSWPLAYFEAPT 45 (129) Q Consensus 9 KR~C~~Cg~K-FYDlnk~PiiCP~CG~e~~~~~~~~~~ 45 (129) +-+||.||.. -| =--|.+||+.|.|..|+.++ T Consensus 2 ~G~CP~C~~~~a~-----GDqCe~CG~~~~p~eLinP~ 34 (35) T d1pfva3 2 KGTCPKCKSPDQY-----GDNCEVCGATYSPTELIEPK 34 (35) T ss_dssp EEECTTTCCSSEE-----TTBCTTTCCBCCGGGSEEEE T ss_pred EEECCCCCCCCCC-----CCCHHHCCCCCCHHHHCCCC T ss_conf 6679799796654-----65277708707899952889 No 37 >d1jj2y_ g.41.8.1 (Y:) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=76.93 E-value=0.6 Score=23.92 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=22.1 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH Q ss_conf 7831178888744214888---7227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~ 38 (129) -.|++||.||.. .+.|. -=.|-+||..|.- T Consensus 25 ~~ky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG 57 (73) T d1jj2y_ 25 KKKHKCPVCGFK--KLKRAGTGIWMCGHCGYKIAG 57 (73) T ss_dssp HSCBCCSSSCCS--CEEEEETTEEEETTTCCEEEC T ss_pred CCCCCCCCCCCC--CEEEEEEEEEECCCCCCEEEC T ss_conf 378649888988--228899888887999988867 No 38 >d1l1oc_ b.40.4.3 (C:) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} Probab=75.69 E-value=0.58 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=23.2 Q ss_pred CCCCC--CCCEEEECCCCCCCCCCCCCEEC Q ss_conf 11788--88744214888722778987153 Q gi|254780459|r 10 RTCPD--TGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~--Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) ..||+ |.+|-.+....--.||+||..++ T Consensus 41 ~aCp~~~C~KKv~~~~~g~~~C~kC~~~~~ 70 (178) T d1l1oc_ 41 QACPTQDCNKKVIDQQNGLYRCEKCDTEFP 70 (178) T ss_dssp EBCCSTTCCCBCEEETTTEEEETTTTEEES T ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCCCC T ss_conf 478973257844107897288888888688 No 39 >d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]} Probab=73.62 E-value=0.55 Score=24.15 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=26.3 Q ss_pred HHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 22278311788887442148887227789871532 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) .+.+..|.|..|.+.|.+ +.--.||+|+..|=. T Consensus 10 ~~~~~~~~C~gC~~~l~~--~~~y~C~~C~~~FC~ 42 (59) T d1z60a1 10 EEYNGERFCYGCQGELKD--QHVYVCAVCQNVFCV 42 (59) T ss_dssp HHHCSCCEETTTTEECTT--SEEECCTTTTCCBCH T ss_pred HHCCCCCCCCCCCCCCCC--CCEEECCCCCCCCCC T ss_conf 233999872587880799--860799678985136 No 40 >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Probab=72.82 E-value=0.59 Score=23.95 Aligned_cols=10 Identities=40% Similarity=1.155 Sum_probs=5.2 Q ss_pred CCCCCCCEEE Q ss_conf 1788887442 Q gi|254780459|r 11 TCPDTGKRFY 20 (129) Q Consensus 11 ~C~~Cg~KFY 20 (129) .||+||++.. T Consensus 5 ~CP~C~s~l~ 14 (181) T d1dgsa1 5 ACPECGHRLV 14 (181) T ss_dssp BCTTTCCBCE T ss_pred CCCCCCCEEE T ss_conf 7999989526 No 41 >d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=70.79 E-value=0.75 Score=23.32 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=22.9 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 1788887442148887227789871532331012 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) +|+=|+.-| ++|++.|+||..|.-.-+.+- T Consensus 2 ~C~Ic~~~~----~~Pv~~~~cGh~fc~~cI~~~ 31 (56) T d2baya1 2 LCAISGKVP----RRPVLSPKSRTIFEKSLLEQY 31 (56) T ss_dssp CCTTTCSCC----SSEEEETTTTEEEEHHHHHHH T ss_pred CCCCCCCHH----HHCCCCCCCCCCCCHHHHHHH T ss_conf 993678568----865745789984559999998 No 42 >d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=70.58 E-value=1.5 Score=21.51 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=23.8 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEE Q ss_conf 783117888874421488872277898715 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSW 36 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~ 36 (129) ..+=+|-.||+++-=--++||-|-.||.-+ T Consensus 2 ~v~YiCgeCg~~~~l~~~d~irCreCG~RI 31 (46) T d1twfl_ 2 TLKYICAECSSKLSLSRTDAVRCKDCGHRI 31 (46) T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCCCC T ss_pred CEEEECCCCCCCEEECCCCCEEECCCCCEE T ss_conf 527985468981076899968811188587 No 43 >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=69.82 E-value=1.4 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.040 Sum_probs=23.4 Q ss_pred HCCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 27831178888744214888722778987153 Q gi|254780459|r 6 LGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 6 lG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) |=---.|+.|+++|-=| +..-.|-.||..|= T Consensus 2 W~~~~~C~~C~~~F~~~-~rkhhCr~CG~~fC 32 (67) T d1vfya_ 2 WIDSDACMICSKKFSLL-NRKHHCRSCGGVFC 32 (67) T ss_dssp CCCCSBCTTTCCBCBTT-BCCEECTTTCCEEC T ss_pred CCCCCCCCCCCCCCCCC-CCCCCCCCCCCEEC T ss_conf 97670011589712686-42241455797764 No 44 >d1q1aa_ c.31.1.5 (A:) Hst2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=69.56 E-value=1.1 Score=22.41 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=20.0 Q ss_pred CCCCCCCCCEEEE------CC----CCCCCCCCCCCEECHH Q ss_conf 3117888874421------48----8872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYD------LN----KQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYD------ln----k~PiiCP~CG~e~~~~ 39 (129) +-.|.+|+.+|.- +. +....||.||...-|. T Consensus 136 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~p~c~~Cgg~lrP~ 176 (289) T d1q1aa_ 136 HCHCIGCGKVYPPQVFKSKLAEHPIKDFVKCDVCGELVKPA 176 (289) T ss_dssp EEEETTTCCEECHHHHHHHHTCSSCCSCCBCTTTCCBEEEE T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 35664777668989999886524555567653224410572 No 45 >d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Probab=69.20 E-value=1.2 Score=22.11 Aligned_cols=30 Identities=3% Similarity=0.049 Sum_probs=22.1 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 1178888744214888722778987153233101 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) -+||-|...| +.|++++.||+.|-..=+.+ T Consensus 23 l~C~IC~~~~----~~pv~~~~CgH~fC~~Ci~~ 52 (97) T d1jm7b_ 23 LRCSRCTNIL----REPVCLGGCEHIFCSNCVSD 52 (97) T ss_dssp TSCSSSCSCC----SSCBCCCSSSCCBCTTTGGG T ss_pred CCCCCCCCHH----HCCCEECCCCCCHHHHHHHH T ss_conf 8992587221----12746588999302999999 No 46 >d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]} Probab=69.13 E-value=1.2 Score=22.15 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=16.7 Q ss_pred CCCCCCCCCCEEEECC--------CCC--CCCCCCCCE Q ss_conf 8311788887442148--------887--227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLN--------KQV--IVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDln--------k~P--iiCP~CG~e 35 (129) .|-+|..||-- ||=. --| =+||-||+. T Consensus 2 ~~y~C~~Cgyi-Yd~~~Gdgt~Fe~LP~dw~CP~C~a~ 38 (45) T d6rxna_ 2 QKYVCNVCGYE-YDPAEHDNVPFDQLPDDWCCPVCGVS 38 (45) T ss_dssp CCEEETTTCCE-ECGGGGTTCCGGGSCTTCBCTTTCCB T ss_pred CCEEECCCCEE-ECCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 87590899808-78644799897788987789599892 No 47 >d1j8fa_ c.31.1.5 (A:) Sirt2 histone deacetylase {Human (Homo sapiens) [TaxId: 9606]} Probab=68.63 E-value=0.97 Score=22.65 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=21.8 Q ss_pred CCCCCCCCCEE-EEC--------CCCCCCCCCCCCEECHH Q ss_conf 31178888744-214--------88872277898715323 Q gi|254780459|r 9 KRTCPDTGKRF-YDL--------NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KF-YDl--------nk~PiiCP~CG~e~~~~ 39 (129) +-.|..|+.++ |++ ...+..||.||...-|. T Consensus 159 ~~~C~~c~~~~~~~~~~~~~~~~~~~~p~C~~CgG~lRP~ 198 (323) T d1j8fa_ 159 TSHCVSASCRHEYPLSWMKEKIFSEVTPKCEDCQSLVKPD 198 (323) T ss_dssp EEEESCTTTCCEECHHHHHHHHHTTCCCBCTTTCCBEEEE T ss_pred CCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 0101033554014455666553135566665679835887 No 48 >d1yc5a1 c.31.1.5 (A:1-245) NAD-dependent deacetylase NpdA {Thermotoga maritima [TaxId: 2336]} Probab=65.43 E-value=1.5 Score=21.50 Aligned_cols=31 Identities=13% Similarity=0.153 Sum_probs=21.3 Q ss_pred CCCCCCCCCEEE------EC-CCCCCCCCCCCCEECHH Q ss_conf 311788887442------14-88872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFY------DL-NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFY------Dl-nk~PiiCP~CG~e~~~~ 39 (129) +-.|..|+++|. .+ ......||.||...-|. T Consensus 121 ~~~C~~c~~~~~~~~~~~~~~~~~~p~c~~Cgg~lrP~ 158 (245) T d1yc5a1 121 EYYCVRCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPN 158 (245) T ss_dssp EEEETTTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEE T ss_pred EEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC T ss_conf 66650457776678876532014578742358714575 No 49 >d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia coli [TaxId: 562]} Probab=65.39 E-value=1 Score=22.55 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=20.7 Q ss_pred CCCCCCCCCEEEEC----CCCCCCCCCCCCEECHH Q ss_conf 31178888744214----88872277898715323 Q gi|254780459|r 9 KRTCPDTGKRFYDL----NKQVIVSPYTQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYDl----nk~PiiCP~CG~e~~~~ 39 (129) +-.|++|+.+|.-- ......||.||...-|. T Consensus 113 ~~~C~~C~~~~~~~~~~~~~~~~~c~~Cgg~lrP~ 147 (235) T d1s5pa_ 113 KVRCSQSGQVLDWTGDVTPEDKCHCCQFPAPLRPH 147 (235) T ss_dssp EEEETTTCCEEECCSCCCSSCCC-------CEEEE T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 79979999734433333556666664446412561 No 50 >d1vqoz1 g.41.8.1 (Z:10-82) Ribosomal protein L37ae {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=65.22 E-value=0.88 Score=22.89 Aligned_cols=30 Identities=17% Similarity=0.511 Sum_probs=22.7 Q ss_pred CCCCCCCCCCCEEEECCCC---CCCCCCCCCEECH Q ss_conf 7831178888744214888---7227789871532 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQ---VIVSPYTQNSWPL 38 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~---PiiCP~CG~e~~~ 38 (129) -.|++||.||.. .+.|. -=.|-+||..|.- T Consensus 25 ~~ky~Cp~Cgk~--~vkR~a~GIW~C~kC~~~~AG 57 (73) T d1vqoz1 25 NEDHACPNCGED--RVDRQGTGIWQCSYCDYKFTG 57 (73) T ss_dssp HSCBCCSSSSCS--CEEEEETTEEEETTTCCEEEC T ss_pred HCCCCCCCCCCC--EEEEEEEEEEECCCCCCEEEC T ss_conf 279619887996--038988888888999998737 No 51 >d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Probab=65.19 E-value=1.3 Score=21.88 Aligned_cols=32 Identities=13% Similarity=0.298 Sum_probs=15.6 Q ss_pred HCCCCCCCCCCCEE--EEC-------CCCCCCCCCCCCEEC Q ss_conf 27831178888744--214-------888722778987153 Q gi|254780459|r 6 LGTKRTCPDTGKRF--YDL-------NKQVIVSPYTQNSWP 37 (129) Q Consensus 6 lG~KR~C~~Cg~KF--YDl-------nk~PiiCP~CG~e~~ 37 (129) .+.+..||-||..= =-+ ++.=..|.-||++|. T Consensus 161 ~~~~~~CPvCGs~P~~s~l~~~~~~~G~R~l~C~~C~teW~ 201 (290) T d2fiya1 161 TESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWH 201 (290) T ss_dssp CTTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEE T ss_pred CCCCCCCCCCCCCCHHHEEECCCCCCCCEEEECCCCCCCCC T ss_conf 66699699999802114032367778856887899988542 No 52 >d1ryqa_ g.41.9.3 (A:) putative DNA-directed RNA polymerase subunit E'' (RpoE2) {Pyrococcus furiosus [TaxId: 2261]} Probab=65.04 E-value=1.3 Score=21.83 Aligned_cols=22 Identities=9% Similarity=0.215 Sum_probs=17.1 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 831178888744214888722778987 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) ..|.|.+|+.-+=+ + .||.||. T Consensus 8 ~~rAC~~C~~i~~~---~--~CpnC~s 29 (67) T d1ryqa_ 8 SEKACRHCHYITSE---D--RCPVCGS 29 (67) T ss_dssp -CEEETTTCBEESS---S--SCTTTCC T ss_pred CCHHHHHCCCCCCC---C--CCCCCCC T ss_conf 17467618875688---8--7979869 No 53 >d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Probab=64.87 E-value=1.7 Score=21.22 Aligned_cols=32 Identities=9% Similarity=-0.015 Sum_probs=24.8 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHCC Q ss_conf 311788887442148887227789871532331012 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~~ 44 (129) .-+||=|+.-| ++|++.|.||..|.-..+.+- T Consensus 22 ~f~CPI~~~lm----~dPV~~~~~~~ty~r~~I~~~ 53 (98) T d1wgma_ 22 EFLDPIMSTLM----CDPVVLPSSRVTVDRSTIARH 53 (98) T ss_dssp TTBCTTTCSBC----SSEEECTTTCCEEEHHHHHHH T ss_pred HHCCCCCHHHH----HHHHHCCCCCCHHHHHHHHHH T ss_conf 74886734688----777762355320149999999 No 54 >d2b4ya1 c.31.1.5 (A:36-302) NAD-dependent deacetylase sirtuin-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=64.86 E-value=1.6 Score=21.39 Aligned_cols=31 Identities=10% Similarity=0.036 Sum_probs=19.5 Q ss_pred CCCCCCCCCEEEECCC------------------------CCCCCCC--CCCEECHH Q ss_conf 3117888874421488------------------------8722778--98715323 Q gi|254780459|r 9 KRTCPDTGKRFYDLNK------------------------QVIVSPY--TQNSWPLA 39 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk------------------------~PiiCP~--CG~e~~~~ 39 (129) +-.|+.||.+|+.... ....||. ||..+-|. T Consensus 128 ~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~C~~~~Cgg~lrP~ 184 (267) T d2b4ya1 128 KTRCTSCGVVAENYKSPICPALSGKGAPEPGTQDASIPVEKLPRCEEAGCGGLLRPH 184 (267) T ss_dssp EEEETTTCCEEECCCSSSSGGGTTCCCCSTTCCCCCCCGGGSCBCCSTTTCCBEEEE T ss_pred EEEECCCCCCCCCCCCCCCHHHHCCCCCCCCHHHHHCCHHHCCCCCCCCCCCEECCC T ss_conf 899799998621111310366614578886424431314334543335789873675 No 55 >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Probab=61.76 E-value=1.7 Score=21.19 Aligned_cols=27 Identities=11% Similarity=0.346 Sum_probs=21.7 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 1788887442148887227789871532 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) .|..|+++|-=|+|. -.|-.||..|=- T Consensus 2 ~C~~C~~~F~~~~rk-hhCr~CG~~fC~ 28 (51) T d1y02a2 2 SCKSCGAHFANTARK-QTCLDCKKNFCM 28 (51) T ss_dssp CCTTTCCCCSSGGGC-EECTTTCCEECG T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCCCCC T ss_conf 761428800697647-446669865172 No 56 >d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=61.36 E-value=1.6 Score=21.34 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=20.1 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 31178888744214888722778987 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) |-.|..| ||||=.|.+-.||+||- T Consensus 2 ~YfC~iC--~l~dddk~~yHC~~Cgi 25 (56) T d2dkta2 2 EYYCSIC--HLFDKDKRQYHCESCGI 25 (56) T ss_dssp SEECSSS--CCEECSSSEEEETTTTE T ss_pred CEECCCC--CCCCCCCCCCCCCCCCC T ss_conf 6578737--75468887665999980 No 57 >d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Probab=59.10 E-value=2.7 Score=19.96 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=22.1 Q ss_pred CCCCCCCEEEE-----------CCCCCCCCCCCCCEECHHHH Q ss_conf 17888874421-----------48887227789871532331 Q gi|254780459|r 11 TCPDTGKRFYD-----------LNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 11 ~C~~Cg~KFYD-----------lnk~PiiCP~CG~e~~~~~~ 41 (129) .| .||..|-- .+..|-.|+.||..|.-... T Consensus 5 ~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy~C~~C~k~F~~~~~ 45 (53) T d2csha1 5 PC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHH 45 (53) T ss_dssp EC-TTSCEESSHHHHHHHHHHHSCCCSEECTTTSCEESSSHH T ss_pred CC-CCCCEECCHHHHHHHHHCCCCCCCCCCCCCCCEECCHHH T ss_conf 79-999817978786998633014658707975989257889 No 58 >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} Probab=58.81 E-value=2.1 Score=20.57 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=16.6 Q ss_pred CCCCCCCCC--------------------CEEEECCCCCCCCCCCCC Q ss_conf 831178888--------------------744214888722778987 Q gi|254780459|r 8 TKRTCPDTG--------------------KRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 8 ~KR~C~~Cg--------------------~KFYDlnk~PiiCP~CG~ 34 (129) .+|.||+|. .+|| .|.=||+|+. T Consensus 294 v~~lCp~Ck~~~~~~~~~~~~~~~~~~~~~~~~----~~~GC~~C~~ 336 (401) T d1p9ra_ 294 VRTLCPDCKEPYEADKEQRKLFDSKKKEPLILY----RATGCPKCNH 336 (401) T ss_dssp EEEECTTTCEEEECCHHHHTTC-----CCCEEE----ECCCCSSSCS T ss_pred HHHHCCCCCCCCCCCHHHHHHCCCCCCCCEEEE----ECCCCCCCCC T ss_conf 342188867688999999962354545663798----0899630379 No 59 >d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Probab=58.33 E-value=2.5 Score=20.10 Aligned_cols=24 Identities=21% Similarity=0.495 Sum_probs=16.0 Q ss_pred CCCCCCCCEEEE---CCC-CCCCCCCCC Q ss_conf 117888874421---488-872277898 Q gi|254780459|r 10 RTCPDTGKRFYD---LNK-QVIVSPYTQ 33 (129) Q Consensus 10 R~C~~Cg~KFYD---lnk-~PiiCP~CG 33 (129) -+|..||.+|-| ||. .-.+|-+|- T Consensus 6 ~~C~eCg~~F~DSYL~~~Fd~~vCD~CR 33 (36) T d1d4ua2 6 VICEECGKEFMDSYLMDHFDLPTCDDCR 33 (36) T ss_dssp EECTTTCCEESCSSSTTTTSCCCCTTTC T ss_pred HHHHHHCCHHHHHHHHHCCCCHHCCCCC T ss_conf 8998857377899999738950114354 No 60 >d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]} Probab=57.99 E-value=3 Score=19.62 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=17.2 Q ss_pred CCCCCCCCCCEEEECCC-----------------CCCCCCCCCCE Q ss_conf 83117888874421488-----------------87227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK-----------------QVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk-----------------~PiiCP~CG~e 35 (129) +|-+|..|| --||-.+ .-=+||-||+. T Consensus 3 kky~C~~Cg-yiYdp~~Gd~~~gi~pGT~F~~LP~dw~CP~C~a~ 46 (56) T d1s24a_ 3 LKWICITCG-HIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGAT 46 (56) T ss_dssp CEEEETTTT-EEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCCC T ss_pred CCEECCCCC-CEECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 327889999-38885547845686989975568987799499895 No 61 >d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo sapiens) [TaxId: 9606]} Probab=57.98 E-value=1.8 Score=20.97 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=20.6 Q ss_pred CCCCCCCCEEEEC-CCCCCCC--CCCCCEEC Q ss_conf 1178888744214-8887227--78987153 Q gi|254780459|r 10 RTCPDTGKRFYDL-NKQVIVS--PYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDl-nk~PiiC--P~CG~e~~ 37 (129) |.||+|++.+--- +-.=++| +.||++|= T Consensus 7 K~CP~C~~~ieK~~GCnhM~C~~~~C~~~fC 37 (60) T d1wd2a_ 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFC 37 (60) T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCS T ss_pred CCCCCCCCEEEECCCCCCEEECCCCCCCEEE T ss_conf 5987999968878898876969989999387 No 62 >d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]} Probab=56.08 E-value=1.8 Score=20.96 Aligned_cols=17 Identities=12% Similarity=-0.001 Sum_probs=13.2 Q ss_pred CCCCCCCCCCCCCEECH Q ss_conf 48887227789871532 Q gi|254780459|r 22 LNKQVIVSPYTQNSWPL 38 (129) Q Consensus 22 lnk~PiiCP~CG~e~~~ 38 (129) +.-.|.+||-||+.+-- T Consensus 20 ~s~qpatcpic~avirq 36 (54) T d1yuja_ 20 QSEQPATCPICYAVIRQ 36 (54) T ss_dssp TTSCCEECTTTCCEESS T ss_pred CCCCCCCCCHHHHHHHH T ss_conf 23599777048999998 No 63 >d2cona1 g.41.15.1 (A:8-73) RNA-binding protein NOB1 (Nin one binding) {Mouse (Mus musculus) [TaxId: 10090]} Probab=55.98 E-value=2.9 Score=19.70 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.6 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 178888744214888722778987 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .|..|-+-..|+.| .-||+||. T Consensus 10 rC~aCf~~t~~~~k--~FCpkCGn 31 (66) T d2cona1 10 RCHGCFKTTSDMNR--VFCGHCGN 31 (66) T ss_dssp ECSSSCCEESCSSC--CSCSSSCC T ss_pred EEEECCCCCCCCCC--CCCCCCCC T ss_conf 74255769688666--41753698 No 64 >d1ma3a_ c.31.1.5 (A:) AF0112, Sir2 homolog (Sir2-AF2) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=55.76 E-value=2.7 Score=19.92 Aligned_cols=31 Identities=6% Similarity=-0.120 Sum_probs=22.1 Q ss_pred CCCCCCCCEEEE--------CCCCCCCCCCCCCEECHHH Q ss_conf 117888874421--------4888722778987153233 Q gi|254780459|r 10 RTCPDTGKRFYD--------LNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KFYD--------lnk~PiiCP~CG~e~~~~~ 40 (129) -.|..|+.+|+- ....+..||.||..+-|.. T Consensus 124 ~~C~~~~~~~~~~~~~~~~~~~~~~~~c~~cgg~lrP~v 162 (252) T d1ma3a_ 124 LDCLDCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRV 162 (252) T ss_dssp EEETTTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEEEE T ss_pred EEECCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCEE T ss_conf 578034655431024443303777777635556688847 No 65 >d2qam01 g.41.8.5 (0:1-56) Ribosomal protein L32p {Escherichia coli [TaxId: 562]} Probab=53.58 E-value=2.6 Score=20.07 Aligned_cols=19 Identities=5% Similarity=0.127 Sum_probs=12.1 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 178888744214888722778987 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .||+||.- .+.=-+|| ||. T Consensus 29 ~c~~CG~~----~lpH~vC~-cG~ 47 (56) T d2qam01 29 VDKTSGEK----HLRHHITA-DGY 47 (56) T ss_dssp ECSSSCCE----ECTTSCCT-TSC T ss_pred ECCCCCCC----CCCCEECC-CCC T ss_conf 78899997----05727889-977 No 66 >d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Probab=50.81 E-value=3.1 Score=19.58 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=19.4 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHH Q ss_conf 3117888874421488872277898715323310 Q gi|254780459|r 9 KRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 9 KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~ 42 (129) .-.|+-|...| +.|++.| ||+.|=..=+. T Consensus 6 ~l~C~IC~~~~----~~p~~lp-CgH~fC~~Ci~ 34 (56) T d1bora_ 6 FLRCQQCQAEA----KCPKLLP-CLHTLCSGCLE 34 (56) T ss_dssp CSSCSSSCSSC----BCCSCST-TSCCSBTTTCS T ss_pred CCCCCCCCCCC----CCCEEEC-CCCHHHHHHHH T ss_conf 88984029415----8978901-77778599887 No 67 >d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=49.77 E-value=4.3 Score=18.70 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=16.0 Q ss_pred CCCCCCCC-----------------CEEEECCCCCCCCCCCCCE Q ss_conf 31178888-----------------7442148887227789871 Q gi|254780459|r 9 KRTCPDTG-----------------KRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg-----------------~KFYDlnk~PiiCP~CG~e 35 (129) |-+|+.|| |.|-||- .-=+||-||+. T Consensus 2 ky~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP-~dw~CP~C~a~ 44 (53) T d1brfa_ 2 KWVCKICGYIYDEDAGDPDNGISPGTKFEELP-DDWVCPICGAP 44 (53) T ss_dssp EEEETTTCCEEETTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB T ss_pred CEECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC T ss_conf 24879999188865578456879999978989-98889299894 No 68 >d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Probab=49.41 E-value=4.3 Score=18.66 Aligned_cols=26 Identities=15% Similarity=0.063 Sum_probs=19.8 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 831178888744214888722778987153 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .|..|..|.+|. +-.++.| .||..|= T Consensus 24 k~~RC~~C~KKl---~l~~~~C-rCg~~FC 49 (74) T d1wfla_ 24 KKNRCFMCRKKV---GLTGFDC-RCGNLFC 49 (74) T ss_dssp CTTBCSSSCCBC---GGGCEEC-TTSCEEC T ss_pred CCCCCHHHCCCC---CCEEEEC-CCCCEEH T ss_conf 788273238863---4230570-6889721 No 69 >d1ywsa1 g.41.17.1 (A:1-82) Diphthamide biosynthesis protein 3, DPH3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=48.86 E-value=2.5 Score=20.13 Aligned_cols=32 Identities=28% Similarity=0.477 Sum_probs=19.9 Q ss_pred CCCCCCCCEEE----ECCCC--CCCCCCCCCE----ECHHHHH Q ss_conf 11788887442----14888--7227789871----5323310 Q gi|254780459|r 10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNS----WPLAYFE 42 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e----~~~~~~~ 42 (129) +-|| ||-+|- +|..- -+.||+|.-- |.++.+. T Consensus 23 ypCr-CGd~F~it~~dLe~ge~v~~C~sCSL~IrVif~~ed~~ 64 (82) T d1ywsa1 23 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMIDVVFDKEDLA 64 (82) T ss_dssp ECCS-SSSCEEEEHHHHHTTCCEEEETTTTEEEEEECCHHHHH T ss_pred ECCC-CCCEEEECHHHHHCCCEEEECCCCCEEEEEEECHHHHH T ss_conf 6135-69837986999858995996899860899995525744 No 70 >d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=47.71 E-value=3.4 Score=19.28 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=26.2 Q ss_pred CHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 52227831178888744214888722778987153233101 Q gi|254780459|r 3 KPELGTKRTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 3 K~elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) +|++=---+||=|..-| ++|++.| ||+.|--.-+.+ T Consensus 2 ~peiP~~l~CpIc~~~m----~dPV~~~-cgh~fc~~ci~~ 37 (78) T d1t1ha_ 2 SPEFPEYFRCPISLELM----KDPVIVS-TGQTYERSSIQK 37 (78) T ss_dssp CCCCSSSSSCTTTSCCC----SSEEEET-TTEEEEHHHHHH T ss_pred CCCCCCCCCCCCCCCHH----HCCEECC-CCCCCHHHHHHH T ss_conf 79899627991718121----0833726-777433999999 No 71 >d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Probab=46.06 E-value=4.2 Score=18.73 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=20.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 1178888744214888722778987153233101 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) .+|+-|- +..++|++-| ||+.|--.=+.+ T Consensus 24 ~~C~IC~----~~~~~~~~~~-CgH~fC~~Ci~~ 52 (79) T d1fbva4 24 QLCKICA----ENDKDVKIEP-CGHLMCTSCLTS 52 (79) T ss_dssp TBCTTTS----SSBCCEECSS-SCCEECHHHHHH T ss_pred CCCCCCC----CCCCCEEEEC-CCCEEEHHHHHH T ss_conf 9993589----7689969958-999352999999 No 72 >d2jzaa1 b.33.1.3 (A:1-122) NADH-nitrite reductase small subunit NirD {Erwinia carotovora [TaxId: 554]} Probab=45.90 E-value=8.1 Score=17.01 Aligned_cols=33 Identities=12% Similarity=0.109 Sum_probs=22.1 Q ss_pred CCCCCCCCCCE------EEECC-CCCCCCCCCCCEECHHH Q ss_conf 83117888874------42148-88722778987153233 Q gi|254780459|r 8 TKRTCPDTGKR------FYDLN-KQVIVSPYTQNSWPLAY 40 (129) Q Consensus 8 ~KR~C~~Cg~K------FYDln-k~PiiCP~CG~e~~~~~ 40 (129) .--+||..|+- ..+.+ +.-|+||+.|..|.+.. T Consensus 42 ~~~~CpH~g~~ll~~G~v~~~~~~~~i~Cp~Hg~~F~l~t 81 (122) T d2jzaa1 42 ISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYD 81 (122) T ss_dssp EBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTT T ss_pred EECCCCCCCCCCCCCCEEEECCCCCEEECCCCCCEEECCC T ss_conf 9668976356343232365036998897997897655133 No 73 >d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=45.49 E-value=3.1 Score=19.57 Aligned_cols=13 Identities=0% Similarity=-0.151 Sum_probs=7.6 Q ss_pred CCCCCCCCCEECH Q ss_conf 7227789871532 Q gi|254780459|r 26 VIVSPYTQNSWPL 38 (129) Q Consensus 26 PiiCP~CG~e~~~ 38 (129) -.+||-||--|.- T Consensus 8 rf~c~pcgirfss 20 (36) T d1y0jb1 8 RFMCLPCGIAFSS 20 (36) T ss_dssp CCBCTTTCCBCSC T ss_pred CEECCCCCEEECC T ss_conf 1512665204347 No 74 >d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]} Probab=44.24 E-value=5.8 Score=17.87 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=15.3 Q ss_pred CCCCCCCC-----------------CEEEECCCCCCCCCCCCCE Q ss_conf 31178888-----------------7442148887227789871 Q gi|254780459|r 9 KRTCPDTG-----------------KRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 9 KR~C~~Cg-----------------~KFYDlnk~PiiCP~CG~e 35 (129) |-+|..|| |+|-+|- .-=+||-||+. T Consensus 3 ky~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~ 45 (53) T d1iroa_ 3 KYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIP-DDWVCPLCGVG 45 (53) T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCB T ss_pred CEECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCC T ss_conf 75909999288855488456879899978889-98899399894 No 75 >d1x3za1 d.3.1.4 (A:8-327) Peptide:N-glycanase 1, PNG1 {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]} Probab=43.89 E-value=5.6 Score=17.96 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=29.7 Q ss_pred HHCCCCCCCCCCCEE-E---ECCCC---------------CCCCCCCCCE--E----CHHHHHCCCCCCCC Q ss_conf 227831178888744-2---14888---------------7227789871--5----32331012344344 Q gi|254780459|r 5 ELGTKRTCPDTGKRF-Y---DLNKQ---------------VIVSPYTQNS--W----PLAYFEAPTSPEKE 50 (129) Q Consensus 5 elG~KR~C~~Cg~KF-Y---Dlnk~---------------PiiCP~CG~e--~----~~~~~~~~~~~~~~ 50 (129) .|=.|-.|+.||.+= + -++.. --.|+.||+. | .|..++..|+||-+ T Consensus 115 ~wvn~p~C~~Cg~~t~~~~~~~g~~~p~~~e~~~~a~~vE~y~C~~C~~~~RFPRyn~p~~LL~tR~GRcg 185 (320) T d1x3za1 115 KWCNKPDCNHCGQNTSENMTPLGSQGPNGEESKFNCGTVEIYKCNRCGNITRFPRYNDPIKLLETRKGRCG 185 (320) T ss_dssp EECSSCCCSSSCSSCCSSEEEEEEECCCSGGGSSSEEEEEEEEETTTCCEEEEEEECCHHHHHHHCEECHH T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHCCCCHH T ss_conf 65589999867997622413466789891565478886999989999995146886888999761575348 No 76 >d1vm9a_ b.33.1.1 (A:) Toluene-4-monooxygenase system protein C, TmoC {Pseudomonas mendocina [TaxId: 300]} Probab=43.39 E-value=5.3 Score=18.11 Aligned_cols=33 Identities=12% Similarity=0.081 Sum_probs=23.2 Q ss_pred CCCCCCCCCCEE--EECCCCCCCCCCCCCEECHHH Q ss_conf 831178888744--214888722778987153233 Q gi|254780459|r 8 TKRTCPDTGKRF--YDLNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 8 ~KR~C~~Cg~KF--YDlnk~PiiCP~CG~e~~~~~ 40 (129) .-..||..|... ..++..-|+||+.|..|++.. T Consensus 40 ~~~~CpH~g~~l~~g~~~~~~i~Cp~Hg~~F~l~~ 74 (109) T d1vm9a_ 40 YQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGT 74 (109) T ss_dssp EESBCSSSSCBGGGSEEETTEEECTTTCCEEETTT T ss_pred EEEECCCCCCCCEEEECCCCEEECCCCCCEEECCC T ss_conf 97668987753225763699997536783287799 No 77 >d1wgea1 g.41.17.1 (A:8-77) DelGEF-interacting protein 1, DelGIP1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=43.04 E-value=3.9 Score=18.92 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=16.9 Q ss_pred CCCCCCCCEEE----ECCCC--CCCCCCCCCEE Q ss_conf 11788887442----14888--72277898715 Q gi|254780459|r 10 RTCPDTGKRFY----DLNKQ--VIVSPYTQNSW 36 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk~--PiiCP~CG~e~ 36 (129) +-|| ||-+|- +|..- -+.||+|.--+ T Consensus 24 ypCp-CGd~F~it~~dLe~ge~V~~C~sCSL~i 55 (70) T d1wgea1 24 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII 55 (70) T ss_dssp ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE T ss_pred ECCC-CCCEEEECHHHHHCCCEEEECCCCCEEE T ss_conf 6789-9995898799986899497299975189 No 78 >d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=42.78 E-value=4.6 Score=18.49 Aligned_cols=20 Identities=0% Similarity=-0.160 Sum_probs=14.6 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +-.|-.|+.||..|.-...+ T Consensus 5 gekP~~C~~C~k~F~~~~~L 24 (36) T d2ct1a2 5 GEKPYECYICHARFTQSGTM 24 (36) T ss_dssp CCCSEECTTTCCEESCHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98797689776411420899 No 79 >d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]} Probab=42.65 E-value=4.6 Score=18.50 Aligned_cols=18 Identities=6% Similarity=0.006 Sum_probs=13.6 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 9 ~ekpy~C~~CgK~F~~~s 26 (38) T d2cota2 9 ERRRYKCDECGKSFSHSS 26 (38) T ss_dssp CSCSSBCSSSCCBCSCHH T ss_pred CCCCEECCCCCCEEECHH T ss_conf 998972588786050778 No 80 >d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=42.45 E-value=7.5 Score=17.22 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=20.3 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 7831178888744214888722778987153 Q gi|254780459|r 7 GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 7 G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) -+|..|..|.+|.- -.++.| .||..|= T Consensus 13 ~k~~RC~~C~KKl~---l~~~~C-rCg~~FC 39 (64) T d1wfha_ 13 QRPNRCTVCRKRVG---LTGFMC-RCGTTFC 39 (64) T ss_dssp SSCCCCTTTCCCCC---TTCEEC-SSSCEEC T ss_pred CCCCCCHHHCCCCC---CEEEEC-CCCCEEH T ss_conf 88980721087736---451462-6989701 No 81 >d2f4ma1 d.3.1.4 (A:164-450) Peptide:N-glycanase 1, PNG1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=41.75 E-value=7.6 Score=17.18 Aligned_cols=45 Identities=9% Similarity=-0.015 Sum_probs=29.2 Q ss_pred HHCCCCCCCCCCCEEEECCCC--C--------------CCCCCCCCE--E----CHHHHHCCCCCCC Q ss_conf 227831178888744214888--7--------------227789871--5----3233101234434 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQ--V--------------IVSPYTQNS--W----PLAYFEAPTSPEK 49 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~--P--------------iiCP~CG~e--~----~~~~~~~~~~~~~ 49 (129) .|=.+=-|+.||.+.--.... | ..|..||.. | .|..++..|+|+- T Consensus 77 ~wv~~ppC~~C~~~~~~~~~~~~p~~~e~~~ga~rVE~~~C~~C~~~~rfpRy~~p~~ll~tr~G~C 143 (287) T d2f4ma1 77 RWVNNIVCSKCGGETRSRDEALLPNDDELKWGAKNVENHYCDACQLSNRFPRYNNPEKLLETRCGRC 143 (287) T ss_dssp EECSSCCCTTTCCCCEECSSCBCCCSHHHHTTCCCEEEEEETTTTEEEEEECCCCHHHHHHHCEESH T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCCCEECCCCCCHHHHHHHCCCCH T ss_conf 5427898755588430046778988466546875489997688887214788799999998568358 No 82 >d2aqaa1 g.41.16.1 (A:2-58) H/aca ribonucleoprotein complex subunit 3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=41.73 E-value=5.3 Score=18.12 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=13.8 Q ss_pred CCCCEEEECCCCCCCCCCCCCE Q ss_conf 8887442148887227789871 Q gi|254780459|r 14 DTGKRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 14 ~Cg~KFYDlnk~PiiCP~CG~e 35 (129) .=|.|-|-|.+ +|| ||.. T Consensus 8 ~~g~rvYTLkk---~~p-~G~~ 25 (57) T d2aqaa1 8 PDGKRIYTLKK---VTE-SGEI 25 (57) T ss_dssp SSSCEECCCCC---SSC-CCCC T ss_pred CCCCEEEEEEC---CCC-CCCC T ss_conf 99978788402---388-9981 No 83 >d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]} Probab=40.60 E-value=3.8 Score=19.02 Aligned_cols=11 Identities=9% Similarity=0.196 Sum_probs=7.4 Q ss_pred CCCCCCCCCEE Q ss_conf 72277898715 Q gi|254780459|r 26 VIVSPYTQNSW 36 (129) Q Consensus 26 PiiCP~CG~e~ 36 (129) |..|++||.-| T Consensus 1 pf~c~kcgkcy 11 (28) T d2dlqa2 1 PFECPKCGKCY 11 (28) T ss_dssp SCBCTTTCCBC T ss_pred CCCCCCCHHHH T ss_conf 97656350055 No 84 >d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Probab=40.50 E-value=4.4 Score=18.60 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=12.2 Q ss_pred CCCCCCCCCCEECHHHH Q ss_conf 87227789871532331 Q gi|254780459|r 25 QVIVSPYTQNSWPLAYF 41 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~~ 41 (129) .|-.|+.||..|.-..- T Consensus 1 kp~~C~~C~k~F~~~~~ 17 (29) T d2adra1 1 RSFVCEVCTRAFARQEH 17 (29) T ss_dssp CCBCCTTTCCCBSCHHH T ss_pred CCCCCCCCCCCCCCCHH T ss_conf 96799899899887047 No 85 >d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=39.89 E-value=7 Score=17.39 Aligned_cols=29 Identities=3% Similarity=-0.082 Sum_probs=19.9 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 1178888744214888722778987153233101 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) -+||=|..-| ++|++- .||+.|.-.-+.+ T Consensus 8 l~CpIc~~l~----~dPv~~-~cGhtfc~~ci~~ 36 (80) T d2c2la2 8 LCGKISFELM----REPCIT-PSGITYDRKDIEE 36 (80) T ss_dssp TBCTTTCSBC----SSEEEC-SSCCEEETTHHHH T ss_pred CCCCCCCCHH----HHHCCC-CCCCEECHHHHHH T ss_conf 1185837323----403305-8868563889999 No 86 >d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]} Probab=38.68 E-value=7.9 Score=17.05 Aligned_cols=23 Identities=17% Similarity=0.205 Sum_probs=18.3 Q ss_pred CCEEEECCCC-CCCCCCCCCEECH Q ss_conf 8744214888-7227789871532 Q gi|254780459|r 16 GKRFYDLNKQ-VIVSPYTQNSWPL 38 (129) Q Consensus 16 g~KFYDlnk~-PiiCP~CG~e~~~ 38 (129) -..++=|.|. |--||.||.-|.+ T Consensus 68 ~v~W~~l~~g~p~RC~eCG~~fkL 91 (98) T d1v54f_ 68 TVIWFWLHKGEAQRCPSCGTHYKL 91 (98) T ss_dssp CCEEEEEESSSCEECTTTCCEEEE T ss_pred EEEEEEEECCCCCCCCCCCCEEEE T ss_conf 337889757998616778868998 No 87 >d1wjpa2 g.37.1.1 (A:43-66) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]} Probab=38.30 E-value=4.4 Score=18.62 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=6.8 Q ss_pred CCCCCCCCEE Q ss_conf 2277898715 Q gi|254780459|r 27 IVSPYTQNSW 36 (129) Q Consensus 27 iiCP~CG~e~ 36 (129) .+||||.--| T Consensus 1 avcpycslrf 10 (26) T d1wjpa2 1 AVCPYCSLRF 10 (26) T ss_dssp BCCTTTCCCB T ss_pred CCCCCCEEEE T ss_conf 9787502243 No 88 >d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]} Probab=37.67 E-value=6.4 Score=17.64 Aligned_cols=20 Identities=10% Similarity=-0.001 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +-.|-.|+.||..|.-...+ T Consensus 4 GekPy~C~~C~k~F~~~~~L 23 (35) T d1srka_ 4 GKRPFVCRICLSAFTTKANC 23 (35) T ss_dssp CCSCEECSSSCCEESSHHHH T ss_pred CCCCCCCCCCCCCCCCHHHH T ss_conf 87460288788965686999 No 89 >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Probab=37.32 E-value=6.2 Score=17.72 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=16.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 178888744214888722778987153 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) .||.|+..+- ....-++|+.|.. |+ T Consensus 3 ~CP~C~~~L~-~~~~~l~C~~~h~-fd 27 (268) T d1p91a_ 3 SCPLCHQPLS-REKNSYICPQRHQ-FD 27 (268) T ss_dssp BCTTTCCBCE-EETTEEECTTCCE-EE T ss_pred CCCCCCHHHH-CCCCEEECCCCCC-CC T ss_conf 4989981220-5798698899985-06 No 90 >d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Probab=37.15 E-value=5.9 Score=17.84 Aligned_cols=15 Identities=0% Similarity=0.009 Sum_probs=11.3 Q ss_pred CCCCCCCCCCEECHH Q ss_conf 872277898715323 Q gi|254780459|r 25 QVIVSPYTQNSWPLA 39 (129) Q Consensus 25 ~PiiCP~CG~e~~~~ 39 (129) .|-.|+.||..|.-. T Consensus 2 KPy~C~~C~k~F~~~ 16 (28) T d1a1ia2 2 KPFQCRICMRNFSRS 16 (28) T ss_dssp CCEECTTTCCEESCH T ss_pred CCCCCCCCCCEECCC T ss_conf 080099786974462 No 91 >d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Probab=36.90 E-value=8.2 Score=16.98 Aligned_cols=27 Identities=4% Similarity=0.069 Sum_probs=18.8 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 11788887442148887227789871532331 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) -+||-|.-.| +.|++-| ||+.|=-.=+ T Consensus 24 l~C~IC~~~~----~~pv~~~-CgH~FC~~Ci 50 (86) T d1rmda2 24 ISCQICEHIL----ADPVETS-CKHLFCRICI 50 (86) T ss_dssp TBCTTTCSBC----SSEEECT-TSCEEEHHHH T ss_pred CCCCCCCCCH----HCCEECC-CCCHHHHHHH T ss_conf 5995678444----1555267-8876319999 No 92 >d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Probab=36.57 E-value=10 Score=16.34 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=18.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 1178888744214888722778987153 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +.|..|.+|--=+ .++.| .||..|= T Consensus 26 ~RC~~C~KKl~l~--~~~~C-rCg~~FC 50 (85) T d1wffa_ 26 KHCFLCGKKTGLA--TSFEC-RCGNNFC 50 (85) T ss_dssp CBCSSSCCBCSSS--SCEEC-TTCCEEC T ss_pred CCCHHCCCEECCC--CCEEC-CCCCEEH T ss_conf 8374407963688--57265-8989801 No 93 >d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Probab=36.08 E-value=7.1 Score=17.36 Aligned_cols=18 Identities=0% Similarity=-0.103 Sum_probs=13.1 Q ss_pred CCCCCCCCCCCCEECHHH Q ss_conf 888722778987153233 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~ 40 (129) +..|-.|+.||..|.-.. T Consensus 4 gekpy~C~~Cgk~F~~~~ 21 (33) T d1x6ea1 4 GEKPYGCVECGKAFSRSS 21 (33) T ss_dssp TCCCEECSSSCCEESSHH T ss_pred CCCCEECCCCCCEECCHH T ss_conf 998863899988728667 No 94 >d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]} Probab=35.87 E-value=6.9 Score=17.42 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=13.5 Q ss_pred CCCCCCCCCCCCEECHHHH Q ss_conf 8887227789871532331 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~ 41 (129) +-.|-.|+.||..|.-... T Consensus 8 geKPy~C~~C~k~F~~~~~ 26 (37) T d1p7aa_ 8 GIKPFQCPDCDRSFSRSDH 26 (37) T ss_dssp CSSSBCCTTTCCCBSSHHH T ss_pred CCCCEEECCCCCEECCHHH T ss_conf 9668575999989248899 No 95 >d1x68a2 g.39.1.3 (A:37-70) Four and a half LIM domains protein 5, FHL-5 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.78 E-value=4.5 Score=18.58 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=16.1 Q ss_pred CCCCCC-----EEEECCCCCCCCCCCCCEEC Q ss_conf 788887-----44214888722778987153 Q gi|254780459|r 12 CPDTGK-----RFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 12 C~~Cg~-----KFYDlnk~PiiCP~CG~e~~ 37 (129) |-.|+. -|. -.|..|.||+||.-.+ T Consensus 2 cgkcsvslvg~gfl-tq~~~i~c~~cgsg~d 31 (34) T d1x68a2 2 CGKCSVSLVGKGFL-TQNKEIFCQKCGSGMD 31 (34) T ss_dssp CTTTCCBCSSSCEE-EETTEEEETTTTCCCC T ss_pred CCCCEEEEEEEEEE-ECCCCEEEHHCCCCCC T ss_conf 85025788711102-2157577011077767 No 96 >d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]} Probab=35.73 E-value=9.5 Score=16.59 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=10.1 Q ss_pred CEEEECCCCCCCCCCCCCE Q ss_conf 7442148887227789871 Q gi|254780459|r 17 KRFYDLNKQVIVSPYTQNS 35 (129) Q Consensus 17 ~KFYDlnk~PiiCP~CG~e 35 (129) |.|-+|- .-=+||-||+. T Consensus 28 T~F~~LP-~~w~CP~C~a~ 45 (52) T d2dsxa1 28 TKFEDLP-DDWACPVCGAS 45 (52) T ss_dssp CCGGGSC-TTCBCTTTCCB T ss_pred CCHHHCC-CCCCCCCCCCC T ss_conf 9978889-97899299891 No 97 >d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.37 E-value=5.8 Score=17.91 Aligned_cols=15 Identities=7% Similarity=0.133 Sum_probs=10.9 Q ss_pred CCCCCCCCCCEECHH Q ss_conf 872277898715323 Q gi|254780459|r 25 QVIVSPYTQNSWPLA 39 (129) Q Consensus 25 ~PiiCP~CG~e~~~~ 39 (129) .|-.|+.||..|.-. T Consensus 1 Kpy~C~~C~k~F~~~ 15 (29) T d1sp1a_ 1 KKFACPECPKRFMRS 15 (29) T ss_dssp CCSCCTTTTCCCSCS T ss_pred CCEECCCCCCEECCH T ss_conf 999899088860435 No 98 >d1x4la2 g.39.1.3 (A:37-66) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.32 E-value=1.6 Score=21.31 Aligned_cols=24 Identities=13% Similarity=0.220 Sum_probs=15.8 Q ss_pred CCCCCCE----EEECCCCCCCCCCCCCE Q ss_conf 7888874----42148887227789871 Q gi|254780459|r 12 CPDTGKR----FYDLNKQVIVSPYTQNS 35 (129) Q Consensus 12 C~~Cg~K----FYDlnk~PiiCP~CG~e 35 (129) |..|+.- =|=-.|+-|.||.||.+ T Consensus 2 c~kcsvslvgrgflterddilc~dcgkd 29 (30) T d1x4la2 2 CKKCSLSLVGRGFLTERDDILCPDCGKD 29 (30) T ss_dssp CSSSCCBCTTSCCEECSSSEECHHHHHT T ss_pred CCEEEEEEEEEECCCCCCCEECCCCCCC T ss_conf 6161588872001000464654654767 No 99 >d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]} Probab=35.11 E-value=6.7 Score=17.49 Aligned_cols=16 Identities=0% Similarity=-0.143 Sum_probs=11.8 Q ss_pred CCCCCCCCCCEECHHH Q ss_conf 8722778987153233 Q gi|254780459|r 25 QVIVSPYTQNSWPLAY 40 (129) Q Consensus 25 ~PiiCP~CG~e~~~~~ 40 (129) .|-.|..||..|.-.. T Consensus 1 KPy~C~eCgK~F~~~s 16 (26) T d1x6ea2 1 KPYKCLECGKAFSQNS 16 (26) T ss_dssp CCEECSSSCCEESSHH T ss_pred CCCCCCCCCCEECCCC T ss_conf 9824889858236673 No 100 >d1vqo11 g.41.8.2 (1:1-56) Ribosomal protein L37e {Archaeon Haloarcula marismortui [TaxId: 2238]} Probab=34.48 E-value=10 Score=16.38 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=19.7 Q ss_pred CCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 1178888744214888722778987 Q gi|254780459|r 10 RTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 10 R~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) -.|--||.+=|-+.|. .|.+||. T Consensus 17 ~~CrRCGr~syH~qK~--~CasCGy 39 (56) T d1vqo11 17 TKCRRCGEKSYHTKKK--VCSSCGF 39 (56) T ss_dssp EECTTTCSEEEETTTT--EETTTCT T ss_pred CHHHCCCCHHHHHCCC--CCCCCCC T ss_conf 6643558245554045--2553588 No 101 >d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]} Probab=34.36 E-value=10 Score=16.32 Aligned_cols=27 Identities=22% Similarity=0.476 Sum_probs=16.4 Q ss_pred CCCCCCCCCCEEEECCC-----------------CCCCCCCCCCE Q ss_conf 83117888874421488-----------------87227789871 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNK-----------------QVIVSPYTQNS 35 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk-----------------~PiiCP~CG~e 35 (129) .|.+|..||- -||=.+ .-=+||-||+. T Consensus 6 ~ky~C~~Cgy-iYDp~~GD~~~gI~pGT~F~dLP~dW~CP~Cga~ 49 (70) T d1dx8a_ 6 GKYECEACGY-IYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRSP 49 (70) T ss_dssp SCEEETTTCC-EECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCCB T ss_pred CEEECCCCCE-EECCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 7078299990-8783447845687989996788898789399996 No 102 >d1fqta_ b.33.1.1 (A:) Rieske-type ferredoxin associated with biphenyl dioxygenase {Burkholderia cepacia [TaxId: 292]} Probab=33.87 E-value=8.1 Score=16.98 Aligned_cols=31 Identities=13% Similarity=0.221 Sum_probs=21.6 Q ss_pred CCCCCCCCEEEE---CCCCCCCCCCCCCEECHHH Q ss_conf 117888874421---4888722778987153233 Q gi|254780459|r 10 RTCPDTGKRFYD---LNKQVIVSPYTQNSWPLAY 40 (129) Q Consensus 10 R~C~~Cg~KFYD---lnk~PiiCP~CG~e~~~~~ 40 (129) -.||.-|....+ +...-|+||..|..|.+.. T Consensus 41 ~~CpH~g~~l~~g~~~~~~~i~Cp~H~~~F~l~t 74 (109) T d1fqta_ 41 DRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRT 74 (109) T ss_dssp SBCTTSSCBSSTTCCEETTEEECTTTCCEEETTT T ss_pred EECCCCCCCCCCCEEECCCEEECCCCCCEEECCC T ss_conf 5444247520134051487787455487998898 No 103 >d1twfi2 g.41.3.1 (I:50-121) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=31.76 E-value=8.4 Score=16.90 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=21.3 Q ss_pred CCCCCCCCCCE---EEECCCC----C----CCCCCCCCEECHHH Q ss_conf 83117888874---4214888----7----22778987153233 Q gi|254780459|r 8 TKRTCPDTGKR---FYDLNKQ----V----IVSPYTQNSWPLAY 40 (129) Q Consensus 8 ~KR~C~~Cg~K---FYDlnk~----P----iiCP~CG~e~~~~~ 40 (129) ++..||.||.+ ||-+--. | .+|.+||.-|-.+. T Consensus 22 t~~~CpkCg~~~a~~~q~QtRsaDE~mT~Fy~C~~C~h~Wr~~~ 65 (72) T d1twfi2 22 SDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHIFTSDQ 65 (72) T ss_dssp CCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCEEECCT T ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCEEEEECCCCCCCCCCCC T ss_conf 67999797798579999514766788548999189989836160 No 104 >d3c0da1 b.33.1.3 (A:4-111) NADH-nitrite reductase small subunit NirD {Vibrio parahaemolyticus [TaxId: 670]} Probab=31.42 E-value=10 Score=16.41 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=20.9 Q ss_pred CCCCCCCCCE------EEECCCC-CCCCCCCCCEECHHH Q ss_conf 3117888874------4214888-722778987153233 Q gi|254780459|r 9 KRTCPDTGKR------FYDLNKQ-VIVSPYTQNSWPLAY 40 (129) Q Consensus 9 KR~C~~Cg~K------FYDlnk~-PiiCP~CG~e~~~~~ 40 (129) -.+||--|.- ..+.+.. -|.||..|..|++.. T Consensus 41 ~~~CpH~g~~L~~~g~~~~~~~~~~i~Cp~Hg~~Fdl~t 79 (108) T d3c0da1 41 QDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKS 79 (108) T ss_dssp ESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTT T ss_pred ECCCCCCCCCCCCCCEEEECCCCEEEECCCCCCEEECCC T ss_conf 745797786123563788528960895444660886347 No 105 >d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=31.40 E-value=15 Score=15.32 Aligned_cols=26 Identities=12% Similarity=0.152 Sum_probs=19.3 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 831178888744214888722778987153 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +|..|..|..|. +-..+.| .||..|= T Consensus 24 kk~RC~~C~KKl---~l~~~~C-rCg~~FC 49 (74) T d1wfpa_ 24 TATRCLSCNKKV---GVTGFKC-RCGSTFC 49 (74) T ss_dssp CCCBCSSSCCBC---TTTCEEC-TTSCEEC T ss_pred CCCCCHHCCCCC---CCCCEEC-CCCCHHH T ss_conf 898271008816---7886234-8877221 No 106 >d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]} Probab=30.83 E-value=8 Score=17.05 Aligned_cols=14 Identities=0% Similarity=0.005 Sum_probs=9.4 Q ss_pred CCCCCCCCCCEECH Q ss_conf 87227789871532 Q gi|254780459|r 25 QVIVSPYTQNSWPL 38 (129) Q Consensus 25 ~PiiCP~CG~e~~~ 38 (129) .|-.|--||.-|.- T Consensus 2 kPf~C~~CgrkFAr 15 (28) T d1a1ia3 2 KPFACDICGRKFAR 15 (28) T ss_dssp CCEECTTTCCEESS T ss_pred CCCCCCHHHHHHHC T ss_conf 87120001025513 No 107 >d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Probab=30.80 E-value=7.6 Score=17.16 Aligned_cols=16 Identities=6% Similarity=-0.176 Sum_probs=9.3 Q ss_pred CCCCCCCCEECHHHHH Q ss_conf 2277898715323310 Q gi|254780459|r 27 IVSPYTQNSWPLAYFE 42 (129) Q Consensus 27 iiCP~CG~e~~~~~~~ 42 (129) -+|-.||..|.....+ T Consensus 3 hvc~ecgkaf~esskl 18 (28) T d1ubdc2 3 HVCAECGKAFVESSKL 18 (28) T ss_dssp EECTTTCCEESSHHHH T ss_pred CHHHHHHHHHHHHHHH T ss_conf 1398886999989887 No 108 >d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=30.71 E-value=9.7 Score=16.53 Aligned_cols=20 Identities=0% Similarity=0.001 Sum_probs=14.4 Q ss_pred CCCCCCCCCCCCEECHHHHH Q ss_conf 88872277898715323310 Q gi|254780459|r 23 NKQVIVSPYTQNSWPLAYFE 42 (129) Q Consensus 23 nk~PiiCP~CG~e~~~~~~~ 42 (129) +-.|-.|+.||..|.-...+ T Consensus 5 gekPy~C~~C~k~F~~~~~L 24 (36) T d1x6ha2 5 GEKPYACSHCDKTFRQKQLL 24 (36) T ss_dssp CCCCEECSSSSCEESSHHHH T ss_pred CCCCEECCCCCCCCCCHHHH T ss_conf 98797889987875877688 No 109 >d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Probab=30.68 E-value=8.3 Score=16.92 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=21.3 Q ss_pred HHCCCCCCCCCCCEEEECCCCCCCCCCCCC Q ss_conf 227831178888744214888722778987 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQVIVSPYTQN 34 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~PiiCP~CG~ 34 (129) .+=.++.|+.|.-.=+--+..+..||.|+- T Consensus 7 ~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G 36 (79) T d1exka_ 7 RIPTLEECDVCHGSGAKPGTQPQTCPTCHG 36 (79) T ss_dssp CCCCEEECGGGTTTSBCSSSCCEECTTTTT T ss_pred EEEEECCCCCCCCCCCCCCCCCEECCCCCC T ss_conf 811404479995756689831601897346 No 110 >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Probab=30.22 E-value=3.7 Score=19.08 Aligned_cols=24 Identities=13% Similarity=0.173 Sum_probs=14.8 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 17888874421488872277898715323 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) .||-|---| +.|++.| ||+.|=.. T Consensus 23 ~CpIC~~~~----~~pv~~~-CgH~fC~~ 46 (103) T d1jm7a_ 23 ECPICLELI----KEPVSTK-CDHIFCKF 46 (103) T ss_dssp SCSSSCCCC----SSCCBCT-TSCCCCSH T ss_pred CCCCCCCHH----CCEEECC-CCCCHHHH T ss_conf 997218231----8918837-99864167 No 111 >d1hxra_ b.88.1.1 (A:) RabGEF Mss4 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=30.06 E-value=8.7 Score=16.80 Aligned_cols=15 Identities=7% Similarity=0.124 Sum_probs=12.0 Q ss_pred CCCCCCCCCCCCCEE Q ss_conf 488872277898715 Q gi|254780459|r 22 LNKQVIVSPYTQNSW 36 (129) Q Consensus 22 lnk~PiiCP~CG~e~ 36 (129) -|+.-|+||.||..+ T Consensus 8 kN~~~v~C~~C~S~i 22 (115) T d1hxra_ 8 RNRKAVLCQRCGSRV 22 (115) T ss_dssp BBSSCEEETTTCCEE T ss_pred CCCCEEECCCCCCEE T ss_conf 674569999999886 No 112 >d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=29.74 E-value=8.3 Score=16.93 Aligned_cols=11 Identities=9% Similarity=-0.007 Sum_probs=7.0 Q ss_pred CCCCCCCEECH Q ss_conf 27789871532 Q gi|254780459|r 28 VSPYTQNSWPL 38 (129) Q Consensus 28 iCP~CG~e~~~ 38 (129) -||-|++.+.. T Consensus 4 qcphc~tiiar 14 (28) T d2ct1a1 4 HCPHCDTVIAR 14 (28) T ss_dssp ECSSSSCEESS T ss_pred CCCCCHHHEEE T ss_conf 69963411132 No 113 >d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia coli [TaxId: 562]} Probab=29.05 E-value=8 Score=17.04 Aligned_cols=29 Identities=10% Similarity=0.251 Sum_probs=19.4 Q ss_pred HH-CCCCCCCCCCCEEEECCCCCCCCCCCCCEEC Q ss_conf 22-7831178888744214888722778987153 Q gi|254780459|r 5 EL-GTKRTCPDTGKRFYDLNKQVIVSPYTQNSWP 37 (129) Q Consensus 5 el-G~KR~C~~Cg~KFYDlnk~PiiCP~CG~e~~ 37 (129) +| |-...|..|...| +.-+.||-|+.+.. T Consensus 13 ~~~~~~~~C~~C~~~~----~~~a~CPdC~~~Le 42 (71) T d2jnea1 13 DQDNGHARCRSCGEFI----EMKALCPDCHQPLQ 42 (71) T ss_dssp EEETTEEEETTTCCEE----EEEEECTTTCSBCE T ss_pred CCCCCCEEHHHHHHHH----EEEEECCCCCCHHH T ss_conf 0258977614640102----36775886020899 No 114 >d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]} Probab=29.05 E-value=16 Score=15.21 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.2 Q ss_pred CCCCCCCCCCEEEECCCCCC----------CCCCCCC Q ss_conf 83117888874421488872----------2778987 Q gi|254780459|r 8 TKRTCPDTGKRFYDLNKQVI----------VSPYTQN 34 (129) Q Consensus 8 ~KR~C~~Cg~KFYDlnk~Pi----------iCP~CG~ 34 (129) ++-+|..|+-+||=-.|.+- -||.|+. T Consensus 8 I~L~st~~~~~~Y~T~Knk~~~~~kLel~Ky~p~~~k 44 (52) T d2gyc11 8 IKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVRQ 44 (52) T ss_dssp CCCCCCCSSSCCCCCCCCCSSSCCSCCCCCBCCSSSS T ss_pred EEEEEECCCCCEEEECCCCCCCCHHEEEECCCCCCCC T ss_conf 9999837888179862788899414389732888773 No 115 >d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]} Probab=28.85 E-value=7.6 Score=17.18 Aligned_cols=16 Identities=0% Similarity=-0.149 Sum_probs=9.6 Q ss_pred CCCCCCCEE-CHHHHHC Q ss_conf 277898715-3233101 Q gi|254780459|r 28 VSPYTQNSW-PLAYFEA 43 (129) Q Consensus 28 iCP~CG~e~-~~~~~~~ 43 (129) |||+||--- .|..+.+ T Consensus 3 vC~~Cg~~C~KPSvL~K 19 (28) T d1bboa1 3 ICEECGIRAKKPSMLKK 19 (28) T ss_dssp BCTTTCCBCSSHHHHHH T ss_pred CCCCCCCCCCCHHHHHH T ss_conf 60021764378799999 No 116 >d2pw4a1 d.380.1.1 (A:1-184) Uncharacterized protein Jann2411 {Jannaschia sp. ccs1 [TaxId: 290400]} Probab=28.13 E-value=14 Score=15.61 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=22.1 Q ss_pred CHHHCCCCCC--CCCCCEEEECCCCC---CCCCCCCC Q ss_conf 5222783117--88887442148887---22778987 Q gi|254780459|r 3 KPELGTKRTC--PDTGKRFYDLNKQV---IVSPYTQN 34 (129) Q Consensus 3 K~elG~KR~C--~~Cg~KFYDlnk~P---iiCP~CG~ 34 (129) ...|+.=|.| |.|+.-|||.-|.. ==++.||. T Consensus 138 ~~~~~RLr~C~ap~C~~vF~D~Srn~~RRwCSm~CGN 174 (184) T d2pw4a1 138 HQNVRRFGICNAHRCDRVYFDTSRNGTRQYCSLACQN 174 (184) T ss_dssp TTCGGGEEECCSTTCCCEEECCSSSCCCCCSSHHHHH T ss_pred CCCHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCC T ss_conf 6754540547999987587758999987756853108 No 117 >d2j9ub1 g.41.11.1 (B:115-161) Vacuolar protein-sorting-associated protein 36, VPS36 {Saccharomyces cerevisiae [TaxId: 4932]} Probab=28.07 E-value=18 Score=14.93 Aligned_cols=35 Identities=9% Similarity=-0.008 Sum_probs=22.9 Q ss_pred CCCCCCCCE---EEECCC---CCCCCCCCCCEECHHHHHCC Q ss_conf 117888874---421488---87227789871532331012 Q gi|254780459|r 10 RTCPDTGKR---FYDLNK---QVIVSPYTQNSWPLAYFEAP 44 (129) Q Consensus 10 R~C~~Cg~K---FYDlnk---~PiiCP~CG~e~~~~~~~~~ 44 (129) -+||-|++- +--|.+ .+.+|-+||...+-+.+..+ T Consensus 4 W~CPICm~~Ne~~~e~~~n~~~~p~C~nCGV~~D~em~~~S 44 (47) T d2j9ub1 4 WVCPICMVSNETQGEFTKDTLPTPICINCGVPADYELTKSS 44 (47) T ss_dssp EECTTTCCEEEESSCCCTTCSSCCBCTTTCCBCCHHHHGGG T ss_pred EECCEEEEECCCEEEECCCCCCCCCCCCCCCCCCHHHHHHC T ss_conf 55361366410012560477788863445875378786521 No 118 >d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]} Probab=28.01 E-value=11 Score=16.24 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=13.7 Q ss_pred CCCCCC--CCCCCEECHHHHH Q ss_conf 887227--7898715323310 Q gi|254780459|r 24 KQVIVS--PYTQNSWPLAYFE 42 (129) Q Consensus 24 k~PiiC--P~CG~e~~~~~~~ 42 (129) -.|-+| |+|+..|.-+--+ T Consensus 4 dkPF~C~~pGC~q~F~neDhL 24 (38) T d1bhia_ 4 DKPFLCTAPGCGQRFTNEDHL 24 (38) T ss_dssp CCCEECCCTTTCCEESSHHHH T ss_pred CCCEECCCCCCCCCCCCHHHH T ss_conf 875314899855325665788 No 119 >d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]} Probab=27.83 E-value=9.9 Score=16.48 Aligned_cols=12 Identities=0% Similarity=-0.023 Sum_probs=6.8 Q ss_pred CCCCCCCCCCEE Q ss_conf 872277898715 Q gi|254780459|r 25 QVIVSPYTQNSW 36 (129) Q Consensus 25 ~PiiCP~CG~e~ 36 (129) .|--|-.||.-| T Consensus 4 KPYeC~~C~KrF 15 (44) T d2csha2 4 KPYECNICAKRF 15 (44) T ss_dssp CCEECSSSCCEE T ss_pred CCEECCCHHHHH T ss_conf 753315202454 No 120 >d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Probab=27.68 E-value=10 Score=16.43 Aligned_cols=14 Identities=7% Similarity=0.112 Sum_probs=10.1 Q ss_pred CCCCCCCCCEECHH Q ss_conf 72277898715323 Q gi|254780459|r 26 VIVSPYTQNSWPLA 39 (129) Q Consensus 26 PiiCP~CG~e~~~~ 39 (129) -.+|-+||..|... T Consensus 4 afvcskcgktftrr 17 (37) T d1x6ha1 4 AFVCSKCGKTFTRR 17 (37) T ss_dssp CEECSSSCCEESCH T ss_pred EEEECCCCCCHHCC T ss_conf 23330034411000 No 121 >d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Probab=25.42 E-value=11 Score=16.23 Aligned_cols=28 Identities=4% Similarity=-0.161 Sum_probs=12.2 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECH Q ss_conf 1788887442148887227789871532 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPL 38 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~ 38 (129) +|+=|-.-|-+..-.|..|.+|+..|-. T Consensus 8 ~C~IC~~~~~~~~~~~c~c~~c~h~~H~ 35 (60) T d1vyxa_ 8 VCWICNEELGNERFRACGCTGELENVHR 35 (60) T ss_dssp EETTTTEECSCCCCCSCCCSSGGGSCCH T ss_pred CCCCCCCCCCCCEEEECCCCCCCCEECH T ss_conf 9923886277751673145897788738 No 122 >d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=25.41 E-value=13 Score=15.75 Aligned_cols=11 Identities=9% Similarity=0.223 Sum_probs=6.8 Q ss_pred CCCCCCCCCEE Q ss_conf 72277898715 Q gi|254780459|r 26 VIVSPYTQNSW 36 (129) Q Consensus 26 PiiCP~CG~e~ 36 (129) --.||-|++-| T Consensus 58 ~q~CpqCkt~Y 68 (93) T d1weoa_ 58 TQNCPQCKTRY 68 (93) T ss_dssp CSSCTTTCCCC T ss_pred CCCCCCCCCHH T ss_conf 70274448724 No 123 >d2ea9a1 d.110.8.1 (A:8-110) Hypothetical protein YfjZ {Escherichia coli [TaxId: 562]} Probab=24.83 E-value=6.8 Score=17.45 Aligned_cols=18 Identities=28% Similarity=0.483 Sum_probs=12.8 Q ss_pred CCCHHHCCCCCCCCC-CCE Q ss_conf 975222783117888-874 Q gi|254780459|r 1 MAKPELGTKRTCPDT-GKR 18 (129) Q Consensus 1 MaK~elG~KR~C~~C-g~K 18 (129) |+.+.||.||.-.-| |+| T Consensus 1 ~s~~~WGL~~~itP~fGAR 19 (103) T d2ea9a1 1 MSNTTWGLQRDITPRLGAR 19 (103) T ss_dssp CCSCHHHHTCCSSSEEEEE T ss_pred CCCCCCCCCCCCCCCCCCE T ss_conf 9766547667757342222 No 124 >d2bmoa1 b.33.1.2 (A:3-152) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]} Probab=24.46 E-value=17 Score=14.96 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=22.1 Q ss_pred CCCCCCCEEEECC---CCCCCCCCCCCEECHHH Q ss_conf 1788887442148---88722778987153233 Q gi|254780459|r 11 TCPDTGKRFYDLN---KQVIVSPYTQNSWPLAY 40 (129) Q Consensus 11 ~C~~Cg~KFYDln---k~PiiCP~CG~e~~~~~ 40 (129) +||-=|+++-.-. ..-|+|||.|=.|...= T Consensus 76 ~C~HRG~~L~~~~~g~~~~i~CpYHgW~yd~~G 108 (150) T d2bmoa1 76 VCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSNG 108 (150) T ss_dssp BCTTTCCBCCCSSEEECSEEECTTTCCEEETTS T ss_pred HCCCCCCCCCCCCCCCCCCEEECCCCEEECCCC T ss_conf 345343554000125544147402120540664 No 125 >d2jo6a1 b.33.1.3 (A:1-108) NADH-nitrite reductase small subunit NirD {Escherichia coli [TaxId: 562]} Probab=24.26 E-value=13 Score=15.69 Aligned_cols=33 Identities=12% Similarity=0.114 Sum_probs=21.2 Q ss_pred CCCCCCCCCCE------EEECCC-CCCCCCCCCCEECHHH Q ss_conf 83117888874------421488-8722778987153233 Q gi|254780459|r 8 TKRTCPDTGKR------FYDLNK-QVIVSPYTQNSWPLAY 40 (129) Q Consensus 8 ~KR~C~~Cg~K------FYDlnk-~PiiCP~CG~e~~~~~ 40 (129) .-..||--|+- +.+.+. .-|+||+.|..|.+.. T Consensus 42 ~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~F~l~t 81 (108) T d2jo6a1 42 ISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSD 81 (108) T ss_dssp EESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTT T ss_pred EECCCCCCCCCCCCCEEEECCCCCCEEECCCCCCEEECCC T ss_conf 9784887897502220475042478898998886487798 No 126 >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Probab=24.21 E-value=8.8 Score=16.77 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=19.7 Q ss_pred CCCCCCCC--EEEECCCCCCCC---CCCCCEECH Q ss_conf 11788887--442148887227---789871532 Q gi|254780459|r 10 RTCPDTGK--RFYDLNKQVIVS---PYTQNSWPL 38 (129) Q Consensus 10 R~C~~Cg~--KFYDlnk~PiiC---P~CG~e~~~ 38 (129) |.|..|.- -=..++..|+.| |..|.|... T Consensus 2 r~Ci~C~~~C~~~~~~~~~~~C~~Np~~g~e~~~ 35 (179) T d1ps9a3 2 NTCIGCNQACLDQIFVGKVTSCLVNPRACHETKM 35 (179) T ss_dssp CCCCCCCTTTHHHHHTTCCCCCSSCTTTTCTTTS T ss_pred CCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCC T ss_conf 5201437888657624980489647654676645 No 127 >d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]} Probab=24.02 E-value=7.7 Score=17.14 Aligned_cols=10 Identities=20% Similarity=0.564 Sum_probs=5.2 Q ss_pred HCCCCCCCCC Q ss_conf 2783117888 Q gi|254780459|r 6 LGTKRTCPDT 15 (129) Q Consensus 6 lG~KR~C~~C 15 (129) .|.+.+|+|| T Consensus 13 YGA~~iCASC 22 (111) T d1xg8a_ 13 YGADVICASC 22 (111) T ss_dssp EECSSCCGGG T ss_pred ECCCCCCHHH T ss_conf 7445404543 No 128 >d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]} Probab=23.76 E-value=13 Score=15.79 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=11.5 Q ss_pred CCCCC--CCCCCEECHHHHH Q ss_conf 87227--7898715323310 Q gi|254780459|r 25 QVIVS--PYTQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiC--P~CG~e~~~~~~~ 42 (129) .|-.| |+||..|.-..-+ T Consensus 1 kpf~C~~~~C~k~F~~~~~L 20 (31) T d1sp2a_ 1 RPFMCTWSYCGKRFTRSDEL 20 (31) T ss_dssp CCCBCCSTTCCCBCSSHHHH T ss_pred CCCCCCCCCCCCCCCCHHHH T ss_conf 90999099879174875676 No 129 >d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Probab=23.62 E-value=17 Score=15.07 Aligned_cols=19 Identities=5% Similarity=-0.008 Sum_probs=11.9 Q ss_pred EEEECC-CCCCCCCCCCCEE Q ss_conf 442148-8872277898715 Q gi|254780459|r 18 RFYDLN-KQVIVSPYTQNSW 36 (129) Q Consensus 18 KFYDln-k~PiiCP~CG~e~ 36 (129) =||=++ ++-+.|.+||.++ T Consensus 30 GFyytg~~D~v~C~~C~~~l 49 (97) T d1se0a_ 30 GMYFTHAGDKVKCFFCGVEI 49 (97) T ss_dssp TEEECSSTTCEEETTTCCEE T ss_pred CCEECCCCCEEEECCCCCCC T ss_conf 98788999877938578890 No 130 >d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Probab=23.05 E-value=14 Score=15.48 Aligned_cols=18 Identities=6% Similarity=0.196 Sum_probs=11.5 Q ss_pred CCCCCCC--CCCEECHHHHH Q ss_conf 8722778--98715323310 Q gi|254780459|r 25 QVIVSPY--TQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiCP~--CG~e~~~~~~~ 42 (129) .|-+|+. ||..|.-..-+ T Consensus 1 kp~~C~~~gCgk~F~~~~~L 20 (30) T d1ubdc3 1 KPFQCTFEGCGKRFSLDFNL 20 (30) T ss_dssp CCEECCSTTCCCEESCHHHH T ss_pred CCCCCCCCCCCCEECCHHHC T ss_conf 98158889979358917783 No 131 >d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]} Probab=23.02 E-value=13 Score=15.77 Aligned_cols=18 Identities=6% Similarity=-0.042 Sum_probs=11.8 Q ss_pred CCCCCCC--CCCEECHHHHH Q ss_conf 8722778--98715323310 Q gi|254780459|r 25 QVIVSPY--TQNSWPLAYFE 42 (129) Q Consensus 25 ~PiiCP~--CG~e~~~~~~~ 42 (129) .|-+|+. ||..|.-..-+ T Consensus 1 kp~~C~~~gCgk~F~~~~~L 20 (30) T d2glia3 1 KPHKCTFEGCRKSYSRLENL 20 (30) T ss_dssp CCCCCCSTTCCCCCSSHHHH T ss_pred CCEECCCCCCCCEECCHHHH T ss_conf 98068889988448976575 No 132 >d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Probab=22.64 E-value=22 Score=14.36 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=20.3 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHHHC Q ss_conf 178888744214888722778987153233101 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYFEA 43 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~~~ 43 (129) .|+=|=..|-. +.....+|.||..|-..=+.+ T Consensus 7 ~C~ICl~~~~~-~~~~~~l~~C~H~Fh~~Ci~~ 38 (55) T d1iyma_ 7 ECAVCLAELED-GEEARFLPRCGHGFHAECVDM 38 (55) T ss_dssp CCTTTCCCCCT-TSCCEECSSSCCEECTTHHHH T ss_pred CCEEECCCCCC-CCEEEEECCCCCCCCHHHHHH T ss_conf 98497900107-988999089898105999999 No 133 >d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]} Probab=22.35 E-value=18 Score=14.85 Aligned_cols=21 Identities=29% Similarity=0.688 Sum_probs=13.7 Q ss_pred HHHCCCCCCCCCCCEEEECCC Q ss_conf 222783117888874421488 Q gi|254780459|r 4 PELGTKRTCPDTGKRFYDLNK 24 (129) Q Consensus 4 ~elG~KR~C~~Cg~KFYDlnk 24 (129) ..||..-.|+.||+.-|-+-| T Consensus 10 ~~~g~~~kC~~C~k~VY~~E~ 30 (43) T d1b8ta3 10 QKVGGSDGCPRCGQAVYAAEK 30 (43) T ss_dssp CCCCCCEECTTTSCEECSSSC T ss_pred CCCCCCCCCCCCCCEEEHHHH T ss_conf 236889867567999668898 No 134 >d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Probab=22.27 E-value=15 Score=15.30 Aligned_cols=27 Identities=7% Similarity=-0.107 Sum_probs=11.8 Q ss_pred CCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 7888874421488872277898715323 Q gi|254780459|r 12 CPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 12 C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) ||=|-.+|=.-++.+.++| ||+.|-.. T Consensus 3 CpICl~~~~~~~~~~~~~~-CgH~~c~~ 29 (52) T d1ur6b_ 3 CPLCMEPLEIDDINFFPCT-CGYQICRF 29 (52) T ss_dssp ETTTTEECCGGGTTCCSSS-SSCCCCHH T ss_pred CCCCCHHHHCCCCEEEECC-CCCCCCHH T ss_conf 9587823518982598669-97704558 No 135 >d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]} Probab=22.01 E-value=14 Score=15.53 Aligned_cols=12 Identities=8% Similarity=-0.039 Sum_probs=8.5 Q ss_pred CCCCCCCCCEEC Q ss_conf 722778987153 Q gi|254780459|r 26 VIVSPYTQNSWP 37 (129) Q Consensus 26 PiiCP~CG~e~~ 37 (129) |=+||.|..-+- T Consensus 2 P~lCPrC~kG~H 13 (32) T d1cl4a_ 2 PGLCPRCKRGKH 13 (32) T ss_dssp CCSCSSCSSCSS T ss_pred CCCCCCCCCCCH T ss_conf 864845467556 No 136 >d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]} Probab=21.81 E-value=14 Score=15.53 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=10.6 Q ss_pred CCCCCCC--CCCEECHHH Q ss_conf 8722778--987153233 Q gi|254780459|r 25 QVIVSPY--TQNSWPLAY 40 (129) Q Consensus 25 ~PiiCP~--CG~e~~~~~ 40 (129) .|-+||. ||..|.-.. T Consensus 1 rPf~C~~~gC~K~F~~~~ 18 (28) T d1ubdc4 1 RPYVCPFDGCNKKFAQST 18 (28) T ss_dssp CCCCCCSTTCCCCCSSTT T ss_pred CCCCCCCCCCCCCCCCHH T ss_conf 981898899698699899 No 137 >d1lv3a_ g.39.1.9 (A:) Hypothetical zinc finger protein YacG {Escherichia coli [TaxId: 562]} Probab=21.45 E-value=19 Score=14.76 Aligned_cols=10 Identities=10% Similarity=0.165 Sum_probs=5.6 Q ss_pred CCCCCCCCEE Q ss_conf 2277898715 Q gi|254780459|r 27 IVSPYTQNSW 36 (129) Q Consensus 27 iiCP~CG~e~ 36 (129) |-||.||+.+ T Consensus 7 v~CP~C~k~~ 16 (65) T d1lv3a_ 7 VNCPTCGKTV 16 (65) T ss_dssp EECTTTCCEE T ss_pred EECCCCCCCC T ss_conf 0488999834 No 138 >d2pu9a1 g.36.1.1 (A:8-115) Ferredoxin thioredoxin reductase (FTR), catalytic beta chain {Synechocystis sp. [TaxId: 1143]} Probab=21.44 E-value=7 Score=17.40 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=21.6 Q ss_pred HHCCCCCCCCCCCEEEECCCC-----CCCCC----------CCCCEECHHHHH Q ss_conf 227831178888744214888-----72277----------898715323310 Q gi|254780459|r 5 ELGTKRTCPDTGKRFYDLNKQ-----VIVSP----------YTQNSWPLAYFE 42 (129) Q Consensus 5 elG~KR~C~~Cg~KFYDlnk~-----PiiCP----------~CG~e~~~~~~~ 42 (129) .+| +|.|| | |||.=++. -|+|| .||--+.++.-. T Consensus 42 ~yG-~~~CP-C--r~~~gk~ee~k~~~~iCPC~~~~e~g~ChC~Lf~t~e~~~ 90 (108) T d2pu9a1 42 ELG-SPLCP-C--RHYEDKEAEVKNTFWNCPCVPMRERKECHCMLFLTPDNDF 90 (108) T ss_dssp HHS-SCBCT-T--BCCSCHHHHHHHCTTBSSCHHHHHHCCCTTSSSBCTTCTT T ss_pred HCC-CCCCC-C--CCCCCCHHHHHCCCEECCCCCHHHCCEEEEEEEECCCCCC T ss_conf 809-98788-6--5678867786357533589685242805587775555444 No 139 >d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Probab=21.24 E-value=15 Score=15.41 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=13.4 Q ss_pred EEECC-CCCCCCCCCCCEE Q ss_conf 42148-8872277898715 Q gi|254780459|r 19 FYDLN-KQVIVSPYTQNSW 36 (129) Q Consensus 19 FYDln-k~PiiCP~CG~e~ 36 (129) ||=.+ ++-+.|.+||.++ T Consensus 63 Fyytg~~D~v~Cf~C~~~l 81 (111) T d1i3oe_ 63 LYYTGIGDQVQCFACGGKL 81 (111) T ss_dssp EEEEEETTEEEETTTCCEE T ss_pred CEECCCCCEEEECCCCCEE T ss_conf 8787999867947679891 No 140 >d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=21.06 E-value=24 Score=14.11 Aligned_cols=27 Identities=22% Similarity=0.504 Sum_probs=17.3 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHH Q ss_conf 17888874421488872277898715323 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~ 39 (129) .|..=+-|-.+| -|++|++|+..|=+. T Consensus 27 ~Cs~~~C~~~~~--lp~~C~~C~~~FC~~ 53 (86) T d1wfea_ 27 SCSFKGCTDVEL--VAVICPYCEKNFCLR 53 (86) T ss_dssp ECCSTTCCCEES--SCEECTTTCCEECGG T ss_pred CCCCCCCCCCCC--CCCCCHHHCCCHHHC T ss_conf 678777888655--741521118611154 No 141 >d1x61a2 g.39.1.3 (A:35-66) Thyroid receptor interacting protein 6, TRIP6 {Human (Homo sapiens) [TaxId: 9606]} Probab=20.81 E-value=23 Score=14.18 Aligned_cols=15 Identities=20% Similarity=0.731 Sum_probs=10.9 Q ss_pred CCCCCCCE-----EEECCCC Q ss_conf 17888874-----4214888 Q gi|254780459|r 11 TCPDTGKR-----FYDLNKQ 25 (129) Q Consensus 11 ~C~~Cg~K-----FYDlnk~ 25 (129) +|..|++| ||-+-|. T Consensus 1 vC~tC~~kLRGqpFYAvekk 20 (32) T d1x61a2 1 VCSTCRAQLRGQHFYAVERR 20 (32) T ss_dssp BCSSSCCBCTTSCEEESSSC T ss_pred CEEEECCEECCCCCEEEECC T ss_conf 93580745158803586211 No 142 >d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Probab=20.31 E-value=20 Score=14.57 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=18.4 Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCEECHHHH Q ss_conf 1788887442148887227789871532331 Q gi|254780459|r 11 TCPDTGKRFYDLNKQVIVSPYTQNSWPLAYF 41 (129) Q Consensus 11 ~C~~Cg~KFYDlnk~PiiCP~CG~e~~~~~~ 41 (129) .|+=|-..| +.|+++..||+.|-..=+ T Consensus 7 ~C~IC~~~~----~~~~~~~~C~H~Fc~~Ci 33 (68) T d1chca_ 7 RCPICLEDP----SNYSMALPCLHAFCYVCI 33 (68) T ss_dssp CCSSCCSCC----CSCEEETTTTEEESTTHH T ss_pred CCCCCCCCC----CCCCEEECCCCCCCHHHH T ss_conf 994499396----688388289991768999 No 143 >d2de6a1 b.33.1.2 (A:1-142) Terminal oxygenase component of carbazole CarAa {Janthinobacterium sp. j3 [TaxId: 213804]} Probab=20.27 E-value=21 Score=14.40 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=20.4 Q ss_pred CCCCCCCCEEE----ECCCCCCCCCCCCCEECHH Q ss_conf 11788887442----1488872277898715323 Q gi|254780459|r 10 RTCPDTGKRFY----DLNKQVIVSPYTQNSWPLA 39 (129) Q Consensus 10 R~C~~Cg~KFY----Dlnk~PiiCP~CG~e~~~~ 39 (129) -+||-=|+..- ...+.-|+||+-|..|.+. T Consensus 67 n~CpHrga~L~~g~~~~~~~~i~Cp~Hgw~fdl~ 100 (142) T d2de6a1 67 DRCLHRGVQLSVKVECKTKSTITCWYHAWTYRWE 100 (142) T ss_dssp SSCTTTCCCGGGGCCCCSTTEEECTTTCEEEETT T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCEEEEEECC T ss_conf 7549987569726524606989644552399616 No 144 >d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Probab=20.26 E-value=19 Score=14.70 Aligned_cols=13 Identities=0% Similarity=-0.038 Sum_probs=8.4 Q ss_pred CCCCCCCCCCCEE Q ss_conf 8872277898715 Q gi|254780459|r 24 KQVIVSPYTQNSW 36 (129) Q Consensus 24 k~PiiCP~CG~e~ 36 (129) .+-+.|.+||.++ T Consensus 48 ~D~v~Cf~C~~~l 60 (137) T d2qfaa1 48 PDLAQCFFCFKEL 60 (137) T ss_dssp TTCEEETTTCCEE T ss_pred CCEEEECCCCCCC T ss_conf 9868966557783 No 145 >d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Probab=20.25 E-value=18 Score=14.89 Aligned_cols=16 Identities=6% Similarity=0.056 Sum_probs=9.9 Q ss_pred CCCCCCCCEECHHHHH Q ss_conf 2277898715323310 Q gi|254780459|r 27 IVSPYTQNSWPLAYFE 42 (129) Q Consensus 27 iiCP~CG~e~~~~~~~ 42 (129) -.|..|+..|.--..+ T Consensus 6 ~~C~~C~k~F~s~qAL 21 (37) T d1njqa_ 6 YTCSFCKREFRSAQAL 21 (37) T ss_dssp EECTTTCCEESSHHHH T ss_pred CCCCCCCCCCCCCCCC T ss_conf 2889988833786545 Done!