RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780459|ref|YP_003064872.1| hypothetical protein
CLIBASIA_01720 [Candidatus Liberibacter asiaticus str. psy62]
         (129 letters)



>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A
           {Saccharomyces cerevisiae} (A:)
          Length = 312

 Score = 24.2 bits (52), Expect = 6.4
 Identities = 8/66 (12%), Positives = 28/66 (42%)

Query: 56  LEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDDDFLEQNDTDTDTDV 115
             +E +V  ++   +E  + +P    +D +  D++ + +     ++D  +  +       
Sbjct: 101 DGDEDDVLEYIGSETEHVQSTPAGGTKDSSIDDIDELIQDMEIKEEDENDDTEEFNAKGG 160

Query: 116 VDMDIS 121
           +  D++
Sbjct: 161 LAKDMA 166


>1zps_A PRA-CH, phosphoribosyl-AMP cyclohydrolase; histidine
           biosynthesis; 1.70A
           {Methanothermobacterthermautotrophicus} (A:1-105)
          Length = 105

 Score = 24.3 bits (53), Expect = 6.7
 Identities = 5/23 (21%), Positives = 15/23 (65%)

Query: 82  EDDTSLDMEYVQEMDLDDDDDFL 104
           + ++S  ++ V+++ +D D D +
Sbjct: 69  KGESSGHVQRVKDVLVDCDGDAV 91


>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET:
           NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A*
           2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
           (A:1-124,A:319-377)
          Length = 183

 Score = 23.9 bits (52), Expect = 8.1
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 85  TSLDMEYVQEMD 96
           TS+  E VQ  D
Sbjct: 113 TSIAYETVQTAD 124


>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1;
           alpha-beta structure, unique N-myristoyltransferase
           fold; 3.00A {Homo sapiens} (A:)
          Length = 496

 Score = 23.9 bits (51), Expect = 8.9
 Identities = 5/77 (6%), Positives = 13/77 (16%)

Query: 42  EAPTSPEKEKEICSLEEETEVKPFVKHTSEEEEESPISKEEDDTSLDMEYVQEMDLDDDD 101
                   E       EE         +   +  +   K++     +     +   D   
Sbjct: 20  MEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKKQKKKKEKGSETDSAQDQPV 79

Query: 102 DFLEQNDTDTDTDVVDM 118
                           +
Sbjct: 80  KMNSLPAERIQEIQKAI 96


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.305    0.128    0.361 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,010,838
Number of extensions: 43697
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 49
Length of query: 129
Length of database: 4,956,049
Length adjustment: 77
Effective length of query: 52
Effective length of database: 2,353,064
Effective search space: 122359328
Effective search space used: 122359328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 50 (23.2 bits)