HHsearch alignment for GI: 254780460 and conserved domain: cd03441

>cd03441 R_hydratase_like (R)-hydratase [(R)-specific enoyl-CoA hydratase]. Catalyzes the hydration of trans-2-enoyl CoA to (R)-3-hydroxyacyl-CoA as part of the PHA (polyhydroxyalkanoate) biosynthetic pathway. The structure of the monomer includes a five-strand antiparallel beta-sheet wrapped around a central alpha helix, referred to as a hot dog fold. The active site lies within a substrate-binding tunnel formed by the homodimer. Other enzymes with this fold include MaoC dehydratase, Hydratase-Dehydrogenase-Epimerase protein (HDE), and the fatty acid synthase beta subunit.
Probab=96.49  E-value=0.06  Score=31.89  Aligned_cols=91  Identities=11%  Similarity=0.064  Sum_probs=54.7

Q ss_pred             CCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECC-CCEEE
Q ss_conf             55300455689952112757888799886401233468826676304511410233798579999998896307-85799
Q gi|254780460|r   64 NLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG-RVVLG  142 (172)
Q Consensus        64 d~wff~gHFp~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~-~~~~~  142 (172)
T Consensus        31 D~~~a~~~~~~~~ia~G~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~f~~pv~~GD-tl~~~~~v~~~~~~~~~~~v  105 (127)
T cd03441          31 DPEYAKAAGFGGRIAHGMLTLSLASGLLVQWLP---G-TDGANLGSQSVRFLAPVFPGD-TLRVEVEVLGKRPSKGRGVV  105 (127)
T ss_pred             CHHHHHHCCCCCCEECCHHHHHHHHHHHHHHCC---C-CCCEEEEEEEEEEECCCCCCC-EEEEEEEEEEEEECCCCCEE
T ss_conf             688883578986231554499999999988706---6-551356564886504679999-99999999999975997099


Q ss_pred             EEEEEEEE-CCEEEEEEE
Q ss_conf             99999999-999999997
Q gi|254780460|r  143 AADGWVKV-NGKEIYQAN  159 (172)
Q Consensus       143 ~~~g~~~v-dg~~i~~a~  159 (172)
T Consensus       106 ~~~~~~~nq~~~~v~~g~  123 (127)
T cd03441         106 TVRTEARNQGGEVVLSGE  123 (127)
T ss_pred             EEEEEEEECCCCEEEEEE
T ss_conf             999999979999999999