HHsearch alignment for GI: 254780460 and conserved domain: cd03450
>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=95.85 E-value=0.15 Score=29.58 Aligned_cols=90 Identities=18% Similarity=0.112 Sum_probs=60.8
Q ss_pred CCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCC-C-EEEEEEEEEEEC
Q ss_conf 99521127578887998864012334688266763045114102337985799999988963078-5-799999999999
Q gi|254780460|r 74 NDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGR-V-VLGAADGWVKVN 151 (172)
Q Consensus 74 ~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~-~-~~~~~~g~~~vd 151 (172)
T Consensus 55 g~tIAHGfltLSl~~~~~~~-~~~~~~~~~~vNYG~dkvRF~~PV~vGs-~vR~~~~l~~v~~~~~g~~~~~~~~tvEie 132 (149)
T cd03450 55 GGTIAHGFLTLSLLPALTPQ-LFRVEGVKMGVNYGLDKVRFPAPVPVGS-RVRGRFTLLSVEELKGGGVQVTLEVTVEIE 132 (149)
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCEEECCCCCCCC-EEEEEEEEEEEEECCCCEEEEEEEEEEEEC
T ss_conf 87346506699999988752-6676784333300335267068756799-999999999989918984999999999995
Q ss_pred C--EEEEEEEEEEEEE
Q ss_conf 9--9999997106998
Q gi|254780460|r 152 G--KEIYQANDLRVCL 165 (172)
Q Consensus 152 g--~~i~~a~~l~vgl 165 (172)
T Consensus 133 g~~kPa~vAe~l~~~~ 148 (149)
T cd03450 133 GEDKPACVAEWISRLY 148 (149)
T ss_pred CCCCCEEEEEEEEEHH
T ss_conf 8988789998855011