HHsearch alignment for GI: 254780460 and conserved domain: cd03450

>cd03450 NodN NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.
Probab=95.85  E-value=0.15  Score=29.58  Aligned_cols=90  Identities=18%  Similarity=0.112  Sum_probs=60.8

Q ss_pred             CCCEEEHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCC-C-EEEEEEEEEEEC
Q ss_conf             99521127578887998864012334688266763045114102337985799999988963078-5-799999999999
Q gi|254780460|r   74 NDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGR-V-VLGAADGWVKVN  151 (172)
Q Consensus        74 ~~PvmPGvL~iEa~~Ql~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~-~-~~~~~~g~~~vd  151 (172)
T Consensus        55 g~tIAHGfltLSl~~~~~~~-~~~~~~~~~~vNYG~dkvRF~~PV~vGs-~vR~~~~l~~v~~~~~g~~~~~~~~tvEie  132 (149)
T cd03450          55 GGTIAHGFLTLSLLPALTPQ-LFRVEGVKMGVNYGLDKVRFPAPVPVGS-RVRGRFTLLSVEELKGGGVQVTLEVTVEIE  132 (149)
T ss_pred             CCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCEEECCCCCCCC-EEEEEEEEEEEEECCCCEEEEEEEEEEEEC
T ss_conf             87346506699999988752-6676784333300335267068756799-999999999989918984999999999995


Q ss_pred             C--EEEEEEEEEEEEE
Q ss_conf             9--9999997106998
Q gi|254780460|r  152 G--KEIYQANDLRVCL  165 (172)
Q Consensus       152 g--~~i~~a~~l~vgl  165 (172)
T Consensus       133 g~~kPa~vAe~l~~~~  148 (149)
T cd03450         133 GEDKPACVAEWISRLY  148 (149)
T ss_pred             CCCCCEEEEEEEEEHH
T ss_conf             8988789998855011