HHsearch results for GI: 254780460 and protein with PDBid: 1vh5_A
>1vh5_A Hypothetical protein YDII; PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; 1.34A {Escherichia coli} SCOP: d.38.1.5 PDB: 1vi8_A 1sbk_A
Probab=94.34 E-value=0.26 Score=26.77 Aligned_cols=132 Identities=14% Similarity=0.011 Sum_probs=74.4
Q ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEHHHHH
Q ss_conf 65589889998418835579988899864122568999971844134235788750786553004556899521127578
Q gi|254780460|r 5 KSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGL 84 (172)
Q Consensus 5 ~~~f~~~~i~~~~~g~~fg~~~~rLP~~p~lmiDrV~~i~~~~g~~g~G~i~aek~i~~d~wff~gHFp~~PvmPGvL~i 84 (172)
|-.++.|.|.++.++.. + -+|=| +++++++ |+++.+..++++.. . ...++-|-.+.
T Consensus 6 ~~~~~le~ln~~~~~~~--------~--~~Lgi-~~~~~~~-------g~~~~~~~v~~~~~--n----~~g~lHGG~ia 61 (148)
T 1vh5_A 6 KRKITLEALNAMGEGNM--------V--GFLDI-RFEHIGD-------DTLEATMPVDSRTK--Q----PFGLLHGGASV 61 (148)
T ss_dssp SSCCCHHHHHHTTTTSH--------H--HHTTC-EEEEECS-------SCEEEEEECSTTTB--C----TTSSBCHHHHH
T ss_pred CCCCCHHHHHHHCCCCH--------H--HHCCC-EEEEEEC-------CEEEEEEECCHHHC--C----CCCCCCHHHHH
T ss_conf 58789999975372517--------8--86495-9999969-------99999999498996--9----99937189999
Q ss_pred HHHHH-HHHHHCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEEEEE-ECCEEEEEEEEEE
Q ss_conf 88799-886401233468826676304511410233798579999998896307857999999999-9999999997106
Q gi|254780460|r 85 DALWQ-LTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVK-VNGKEIYQANDLR 162 (172)
Q Consensus 85 Ea~~Q-l~~~~~~~~~~~~~~~~~~~~~vkfr~~V~Pgd~~i~~~i~ik~v~~~~~~~~~~~g~~~-vdg~~i~~a~~l~ 162 (172)
+++. ++++...............--++.|.+++.+|+ +..+.+ +.+.++.+++++++++ -+|+++++++- .
T Consensus 62 -tl~D~~~~~a~~~~~~~~~~~~t~~l~i~flr~a~~g~--~~~~a~---vv~~Gr~~~~~~~~i~d~~gklvA~a~~-T 134 (148)
T 1vh5_A 62 -VLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGR--VRGVCK---PLHLGSRHQVWQIEIFDEKGRLCCSSRL-T 134 (148)
T ss_dssp -HHHHHHHHHHHHHTSCTTCEEEEEEEEEEECSCCCSSE--EEEEEE---EEEECSSEEEEEEEEECTTSCEEEEEEE-E
T ss_pred -HHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCE--EEEEEE---EEEECCCEEEEEEEEEECCCCEEEEEEE-E
T ss_conf -99886444677653036833786666899974688871--899999---9991896999999999089989999989-9
Q ss_pred EEEEC
Q ss_conf 99861
Q gi|254780460|r 163 VCLTI 167 (172)
Q Consensus 163 vgl~~ 167 (172)
..+.+
T Consensus 135 ~~vl~ 139 (148)
T 1vh5_A 135 TAILE 139 (148)
T ss_dssp EEEEC
T ss_pred EEEEC
T ss_conf 99991