RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus Liberibacter asiaticus str. psy62] (172 letters) >gnl|CDD|179953 PRK05174, PRK05174, 3-hydroxydecanoyl-(acyl carrier protein) dehydratase; Validated. Length = 172 Score = 324 bits (833), Expect = 8e-90 Identities = 102/168 (60%), Positives = 126/168 (75%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60 M ++SSYT E++L CG GE+FG GNAQLP PPMLM RIT+ISETGG + +G + AE+D Sbjct: 1 MMTKQSSYTKEDLLACGRGELFGPGNAQLPAPPMLMMDRITEISETGGEFGKGYIVAELD 60 Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120 I P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P Sbjct: 61 INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGPGKGRALGVGEVKFTGQVLP 120 Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTID 168 K V Y ID K+++ ++V+G ADG V V+G+EIY A DL+V L D Sbjct: 121 TAKKVTYEIDIKRVINRKLVMGIADGRVLVDGEEIYTAKDLKVGLFKD 168 >gnl|CDD|130810 TIGR01749, fabA, beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA. This enzyme, FabA, shows overlapping substrate specificity with FabZ with regard to chain length in fatty acid biosynthesis. It is commonly designated 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) as if it were specific for that chain length, but its specificity is broader; it is active even in the initiation of fatty acid biosynthesis. This enzyme can also isomerize trans-2-decenoyl-ACP to cis-3-decenoyl-ACP to bypass reduction by FabI and instead allow biosynthesis of unsaturated fatty acids. FabA cannot elongate unsaturated fatty acids. Length = 169 Score = 270 bits (693), Expect = 9e-74 Identities = 100/162 (61%), Positives = 123/162 (75%) Query: 4 RKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITP 63 +K++YT E++L CG GE+FG GNAQLP PPMLM RI +ISETGG + +G V AE+DI P Sbjct: 1 KKNAYTREDLLACGRGELFGPGNAQLPAPPMLMIDRIVEISETGGKFGKGYVEAELDIRP 60 Query: 64 NLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCK 123 +LWFF CHF DPVMPGCLGLDA+WQL GFFLGWLG G+GRA+ V +KF G V P K Sbjct: 61 DLWFFGCHFIGDPVMPGCLGLDAMWQLVGFFLGWLGGPGRGRALGVGEVKFTGQVLPTAK 120 Query: 124 LVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165 V Y I FK+++ R+V+G ADG V V+G+ IY A+DLRV L Sbjct: 121 KVTYRIHFKRVINRRLVMGIADGEVLVDGRLIYTASDLRVGL 162 >gnl|CDD|149192 pfam07977, FabA, FabA-like domain. This enzyme domain has a HotDog fold. Length = 133 Score = 175 bits (447), Expect = 4e-45 Identities = 66/134 (49%), Positives = 87/134 (64%), Gaps = 4/134 (2%) Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87 LP + P LM R+T+I GG + +G + AE ++TPN WFF HF DPVMPG LGL+A+ Sbjct: 1 LPHRYPFLMIDRVTEIDPEGGKF-KGYIVAEKNVTPNEWFFQGHFPGDPVMPGVLGLEAM 59 Query: 88 WQLTGFFLGWLGEL-GKGRAV-SVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAAD 145 QL GF+L WLG GKGRA + +KFRG VTP K + Y ++ K+I R V+G AD Sbjct: 60 AQLGGFYLLWLGGGEGKGRARFGIDEVKFRGQVTPGDKQLRYEVEIKRIGPRRGVIGIAD 119 Query: 146 GWVKVNGKEIYQAN 159 G V+GK +Y+A Sbjct: 120 GRALVDGKLVYEAE 133 >gnl|CDD|130811 TIGR01750, fabZ, beta-hydroxyacyl-[acyl carrier protein] dehydratase FabZ. This enzyme, FabZ, shows overlapping substrate specificity with FabA with regard to chain length in fatty acid biosynthesis. FabZ works preferentially on shorter chains and is often designated (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase, although its actual specificity is broader. Unlike FabA, FabZ does not function as an isomerase and cannot initiate unsaturated fatty acid biosynthesis. However, only FabZ can act during the elongation of unsaturated fatty acid chains. Length = 140 Score = 57.7 bits (140), Expect = 2e-09 Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 33 PMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTG 92 P L+ RI ++ + A ++T N FF HF P+MPG L ++AL Q G Sbjct: 14 PFLLVDRILELDP------GKRIVAIKNVTINEPFFQGHFPEKPIMPGVLIVEALAQAGG 67 Query: 93 FFLGWL--GELGKGRAV---SVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGW 147 GE+GKG+ V + KFR V P +L+ +F K R +G G Sbjct: 68 VLAILSLGGEIGKGKLVYFAGIDKAKFRRPVVPGDQLI-LHAEFLKKRRK---IGKFKGE 123 Query: 148 VKVNGK 153 V+GK Sbjct: 124 ATVDGK 129 >gnl|CDD|183883 PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed. Length = 464 Score = 47.6 bits (114), Expect = 1e-06 Identities = 34/141 (24%), Positives = 57/141 (40%), Gaps = 38/141 (26%) Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87 LP + P L+ +I ++ +T + ++T N FF HF +PVMPG L ++A+ Sbjct: 330 LPHRYPFLLVDKIIELGDTK-------IVGIKNVTMNEPFFQGHFPGNPVMPGVLQIEAM 382 Query: 88 WQLTG---------------FFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFK 132 Q G +F+ + +KFR V P L+ + ++ Sbjct: 383 AQTGGILVLNTVPDPENYSTYFM------------KIDKVKFRQKVVPGDTLI-FKVELL 429 Query: 133 KILRGRVVLGAADGWVKVNGK 153 +R + G VNGK Sbjct: 430 SPIRRGIC--QMQGKAYVNGK 448 >gnl|CDD|178788 PRK00006, fabZ, (3R)-hydroxymyristoyl-ACP dehydratase; Reviewed. Length = 147 Score = 45.1 bits (108), Expect = 1e-05 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 14/124 (11%) Query: 33 PMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTG 92 P L+ R+ ++ G + A ++T N FF HF PVMPG L ++A+ Q G Sbjct: 21 PFLLVDRVLELEP--GKS----IVAIKNVTINEPFFQGHFPGYPVMPGVLIIEAMAQAAG 74 Query: 93 FFLGWLGELGKGRAV---SVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVK 149 L E KG+ V + +F+ V P +L ++ K RG + G Sbjct: 75 -VLALKSEENKGKLVYFAGIDKARFKRPVVPGDQL-ILEVELLKQRRG---IWKFKGVAT 129 Query: 150 VNGK 153 V+GK Sbjct: 130 VDGK 133 >gnl|CDD|181927 PRK09522, PRK09522, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional. Length = 531 Score = 30.0 bits (67), Expect = 0.37 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%) Query: 76 PVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSN---IKFRGMVTP 120 P++ CLG A+ + G ++G GE+ G+A S+ + F G+ P Sbjct: 79 PIIGICLGHQAIVEAYGGYVGQAGEILHGKASSIEHDGQAMFAGLTNP 126 >gnl|CDD|178493 PLN02905, PLN02905, beta-amylase. Length = 702 Score = 28.4 bits (63), Expect = 0.86 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 9/48 (18%) Query: 97 WLGELGKGRAVSVSNIKF---RGMVTPDCKLVEYGIDFKKILRGRVVL 141 W+ E+G+ S +I F G P+C + +GID ++ILRGR L Sbjct: 363 WVAEIGR----SNPDIFFTDREGRRNPEC--LSWGIDKERILRGRTAL 404 >gnl|CDD|152308 pfam11872, DUF3392, Protein of unknown function (DUF3392). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length. Length = 106 Score = 27.2 bits (61), Expect = 2.4 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 14/56 (25%) Query: 84 LDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRV 139 LD L L + +L E +S++ +V C LV +G D + LR + Sbjct: 4 LDLLATLGRWLRPYLSE------ISLA------LVA--CLLVVFGDDINRFLRRLL 45 >gnl|CDD|180205 PRK05691, PRK05691, peptide synthase; Validated. Length = 4334 Score = 27.1 bits (60), Expect = 2.8 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 19/68 (27%) Query: 99 GELGKGRAVSVSN----------IKFRGMVTPDCKLVEYGIDFKK--------ILRG-RV 139 G GK + V VS+ I+ GM DC+L Y I+F +L G RV Sbjct: 2343 GSTGKPKGVVVSHGEIAMHCQAVIERFGMRADDCELHFYSINFDAASERLLVPLLCGARV 2402 Query: 140 VLGAADGW 147 VL A W Sbjct: 2403 VLRAQGQW 2410 >gnl|CDD|181122 PRK07799, PRK07799, enoyl-CoA hydratase; Provisional. Length = 263 Score = 26.6 bits (59), Expect = 3.9 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Query: 130 DFKKILRGR----VVLGAADGWVKVNGKEIYQANDLRV 163 +L+GR ++ A +G G EI Q D+RV Sbjct: 89 RIDALLKGRRLTKPLIAAVEGPAIAGGTEILQGTDIRV 126 >gnl|CDD|114761 pfam06057, VirJ, Bacterial virulence protein (VirJ). This family consists of several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localized to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium. Length = 192 Score = 25.8 bits (57), Expect = 5.7 Identities = 11/42 (26%), Positives = 15/42 (35%) Query: 73 KNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKF 114 K L L GWLG G+G+A V ++ Sbjct: 94 KQRVRQVSLLALGKKADFEISVEGWLGWDGEGKADPVPDLAR 135 >gnl|CDD|182309 PRK10213, nepI, ribonucleoside transporter; Reviewed. Length = 394 Score = 25.6 bits (56), Expect = 5.9 Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 112 IKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADG 146 I F ++T C LV + F +L GR LG A G Sbjct: 89 ILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALG 123 >gnl|CDD|185321 PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional. Length = 178 Score = 25.7 bits (56), Expect = 6.0 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 6/42 (14%) Query: 105 RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILR-----GRVVL 141 R V+V ++F G PD +V YGID+ + R G+V+L Sbjct: 135 REVNVP-VEFIGFSIPDEFVVGYGIDYAQRYRHLPYIGKVIL 175 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.143 0.457 Gapped Lambda K H 0.267 0.0726 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 2,927,202 Number of extensions: 177901 Number of successful extensions: 255 Number of sequences better than 10.0: 1 Number of HSP's gapped: 252 Number of HSP's successfully gapped: 18 Length of query: 172 Length of database: 5,994,473 Length adjustment: 87 Effective length of query: 85 Effective length of database: 4,114,577 Effective search space: 349739045 Effective search space used: 349739045 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 54 (24.6 bits)