RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus Liberibacter asiaticus str. psy62] (172 letters) >1mka_A Beta-hydroxydecanoyl thiol ester dehydrase; fatty acid biosynthesis; HET: DAC; 2.00A {Escherichia coli} (A:) Length = 171 Score = 169 bits (428), Expect = 3e-43 Identities = 92/163 (56%), Positives = 120/163 (73%) Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62 +++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61 Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122 P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121 Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165 K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGL 164 >2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism, fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa} (C:) Length = 342 Score = 146 bits (370), Expect = 1e-36 Identities = 91/162 (56%), Positives = 119/162 (73%) Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62 +++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61 Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122 P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121 Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVC 164 K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVG 163 Score = 134 bits (338), Expect = 6e-33 Identities = 92/165 (55%), Positives = 120/165 (72%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60 +++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+D Sbjct: 171 FVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELD 230 Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120 I P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P Sbjct: 231 INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP 290 Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165 K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L Sbjct: 291 TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGL 335 >1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty acid biosynthesis, hot DOG fold, lyase; 2.50A {Pseudomonas aeruginosa} (A:) Length = 168 Score = 119 bits (298), Expect = 3e-28 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59 + S E+ LP + P L+ R+ ++ G +RA Sbjct: 7 HHHHSSGLVPRGSHXXDINEIR----EYLPHRYPFLLVDRVVELDIEGK-----RIRAYK 57 Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWL-----GELGKGRAVSVSNIKF 114 +++ N FF+ HF P+ PG L ++A Q G + V ++F Sbjct: 58 NVSINEPFFNGHFPEHPIXPGVLIIEAXAQAAGILGFKXLDVKPADGTLYYFVGSDKLRF 117 Query: 115 RGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165 R V P +L + K + + + D V+ K + A ++ Sbjct: 118 RQPVLPGDQLQLH----AKFISVKRSIWKFDCHATVDDKPVCSA-EIICAE 163 >1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP dehydratase, fatty acid biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium falciparum} (A:) Length = 154 Score = 117 bits (294), Expect = 1e-27 Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 24/170 (14%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59 M N +S E+I LP + P L+ ++ + + Sbjct: 4 MPNYDTSIDIEDIK------------KILPHRYPFLLVDKVIYMQPNKT------IIGLK 45 Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGR---AVSVSNIKFRG 116 ++ N FF+ HF +MPG L ++AL QL G + K V ++++ Sbjct: 46 QVSTNEPFFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVRWKK 105 Query: 117 MVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLT 166 V P L + + + + G VNGK + +++ L+ Sbjct: 106 PVLPGDTL-TMQANLISF-KSSLGIAKLSGVGYVNGKVVINISEMTFALS 153 >3esi_A Uncharacterized protein; protein from erwinia carotovora subsp. atroseptica (pectobacterium atrosepticum), structural genomics; 2.50A {Pectobacterium atrosepticum} (A:) Length = 129 Score = 116 bits (291), Expect = 2e-27 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 15/135 (11%) Query: 32 PPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLT 91 P L+ H + + ET V + + P+L++F+ HF P++PG LD + Sbjct: 3 PVELVRHDVKKTDETSQ------VELMLQVDPDLFWFNGHFTGQPLLPGVAQLDWVMHYA 56 Query: 92 GFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVN 151 L +S+ NIKF+ + P L + + + L + ++ + Sbjct: 57 TTVLAQG-----WTFLSIENIKFQQPILPGKTL-RLVLIWHAGKQS---LTFSYSILEGD 107 Query: 152 GKEIYQANDLRVCLT 166 + + +++ Sbjct: 108 TERTASSGKIKLTPI 122 >3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, cytoplasm, lipid A biosynthesis, lipid synthesis; HET: MSE; 2.59A {Campylobacter jejuni subsp} (A:) Length = 146 Score = 107 bits (269), Expect = 6e-25 Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 17/139 (12%) Query: 27 AQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLD 85 LP + P L+ +IT++ V +I+ + F HF P+ PG L L+ Sbjct: 9 EILPHRYPFLLVDKITELKVKEV------VLGYKNISISDHVFXGHFPGHPIYPGVLILE 62 Query: 86 ALWQLTGFFLGWLGELGKGRA------VSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRV 139 Q G E + KFR V P +L +++ R Sbjct: 63 GXAQTGGVLAFESXEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYE----XSVVKNRG 118 Query: 140 VLGAADGWVKVNGKEIYQA 158 G V+G + +A Sbjct: 119 NXWIFKGQAFVDGNLVAEA 137 >2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase; lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A* (A:) Length = 171 Score = 106 bits (265), Expect = 2e-24 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59 +N +S + E IL+ LP + PML+ RIT++ + A Sbjct: 17 HQNLQSQFFIEHILQI------------LPHRYPMLLVDRITELQANQK------IVAYK 58 Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGK--------GRAVSVSN 111 +IT N F+ HF N P+ PG L ++ + Q GF +++ Sbjct: 59 NITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDK 118 Query: 112 IKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165 +KFR VTP +L + ++L+ + ++ G +V+GK + +A +L+ + Sbjct: 119 VKFRIPVTPGDRLEYH----LEVLKHKGMIWQVGGTAQVDGKVVAEA-ELKAMI 167 >1q6w_A Monoamine oxidase regulatory protein, putative; structural genomics, nysgxrc T805, hot DOG fold; 2.81A {Archaeoglobus fulgidus dsm 4304} (A:) Length = 161 Score = 41.6 bits (97), Expect = 6e-05 Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 6/109 (5%) Query: 56 RAEMDITP---NLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGW-LGELGKGRAVSVSN 111 D P ++ F P+ G L L + + + Sbjct: 41 YLTADFFPLHTDVEFAKKTIFGKPIAQGXLVLSIALGXVDQVILSNYDVSSVIAFFGIKD 100 Query: 112 IKFRGMVTPDCKL-VEYGIDFKKILRGRVVLGAADGWVK-VNGKEIYQA 158 ++F V + + K+ + + VK G+ + A Sbjct: 101 VRFLRPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVLTA 149 >2bi0_A Hypothetical protein RV0216; conserved hypothetical, hotdog-fold, structural proteomics in europe, spine, structural genomics; 1.9A {Mycobacterium tuberculosis} (A:176-337) Length = 162 Score = 40.1 bits (93), Expect = 2e-04 Identities = 9/109 (8%), Positives = 19/109 (17%), Gaps = 8/109 (7%) Query: 56 RAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFR 115 R ++I D ++ G + L + + Sbjct: 53 RLTLNIAA--THHDWRVSGRRLVYGGHTIGLALAQATRLLP-----NLATVLDWESCDHT 105 Query: 116 GMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVC 164 V L + V + + V Sbjct: 106 APVHEGDTLYSELHIESAQAHADGGVLGLRSLVYAVSDSASEPDRQ-VL 153 >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* (G:1261-1643) Length = 383 Score = 34.8 bits (78), Expect = 0.007 Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 15/127 (11%) Query: 31 KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQL 90 P+ + T A + N HF + +PG + ++ Sbjct: 259 PIPIAVLDSYTPS--------TNEPYARVSGDLNPIHVSRHFASYANLPGTI-THGMFSS 309 Query: 91 TGFFLGWLGELGKGRAVSVS--NIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWV 148 + V +F MV P+ L + I ++ GR ++ Sbjct: 310 ASVRALIENWAADSVSSRVRGYTCQFVDMVLPNTAL-KTSIQHVGMINGRKLI---KFET 365 Query: 149 KVNGKEI 155 + + Sbjct: 366 RNEDDVV 372 >3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural genomics, structural genomics consortium, SGC, lyase; 1.99A {Homo sapiens} (A:) Length = 148 Score = 31.2 bits (70), Expect = 0.074 Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 9/99 (9%) Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120 + N F + ++ G L + L G + G + + I F + Sbjct: 46 LHLNEDFAKHTKFGNTIVHGVLINGLISALLGTKMPGPGCVFLSQ-----EISFPAPLYI 100 Query: 121 DCKL-VEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158 + + K + + V + K + + Sbjct: 101 GEVVLASAEVKKLKRFIAIIAV---SCSVIESKKTVMEG 136 >2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in europe, spine, structural genomics; 1.8A {Mycobacterium tuberculosis} (A:) Length = 151 Score = 26.6 bits (58), Expect = 1.8 Identities = 16/135 (11%), Positives = 30/135 (22%), Gaps = 15/135 (11%) Query: 31 KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCL----GLDA 86 K + ITQ A D D + A Sbjct: 17 KVGQSDWVTITQEE------VNLFADATGD--HQWIHVDPERAAAGPFGTTIAHGFXTLA 68 Query: 87 LWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKL-VEYGIDFKKILRGRVVLGAA- 144 L + + ++ ++F V ++ + + L V Sbjct: 69 LLPRLQHQXYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGNGTVQATVS 128 Query: 145 -DGWVKVNGKEIYQA 158 V+ + K A Sbjct: 129 TTVEVEGSAKPACVA 143 >3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding, pyrimidine biosynthesis, zinc, structural genomics; 2.00A {Staphylococcus aureus subsp} (A:54-315) Length = 262 Score = 26.0 bits (56), Expect = 3.2 Identities = 4/27 (14%), Positives = 12/27 (44%) Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQ 89 ++ + +K +P + +AL + Sbjct: 211 DDIPGNNAIYKXNPPLRSTEDREALLE 237 >3gek_A Putative thioesterase YHDA; X-RAY, structure genomics, NESG, KR113, Q9CHK5_lacla, structural genomics, PSI-2; 2.24A {Lactococcus lactis subsp} (A:) Length = 146 Score = 24.9 bits (54), Expect = 7.1 Identities = 12/140 (8%), Positives = 30/140 (21%), Gaps = 26/140 (18%) Query: 26 NAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLD 85 N + ++ ++ H + + G L Sbjct: 8 NITDFQVFTDENSDKFVSKI-------YKFSSKXILSDF------HAQPQGFLNGGASLA 54 Query: 86 ALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVV-LGAA 144 G +G N + + RG ++ G Sbjct: 55 LAEITAGXASNAIGSGQYFAFGQSINANHLNPKKCEGFV---------NARGLLLKNGKR 105 Query: 145 DGWVKVNGKEIYQANDLRVC 164 + ++ +I N+ + Sbjct: 106 NHVWEI---KITDENETLIS 122 >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); X-RAY crystallography, hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} (L:145-222,L:286-421) Length = 214 Score = 24.8 bits (54), Expect = 7.5 Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQI 43 +K KS Y + E + C G + G G +P M T++ Sbjct: 156 VKAGKSPYHFIEYMACPGGCVCGGGQPVMPGVLEAMDRTTTRL 198 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.323 0.143 0.457 Gapped Lambda K H 0.267 0.0540 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,445,287 Number of extensions: 64142 Number of successful extensions: 236 Number of sequences better than 10.0: 1 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 25 Length of query: 172 Length of database: 4,956,049 Length adjustment: 82 Effective length of query: 90 Effective length of database: 2,184,039 Effective search space: 196563510 Effective search space used: 196563510 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 51 (23.9 bits)