RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl
carrier protein) dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
(172 letters)
>1mka_A Beta-hydroxydecanoyl thiol ester dehydrase; fatty acid
biosynthesis; HET: DAC; 2.00A {Escherichia coli} (A:)
Length = 171
Score = 169 bits (428), Expect = 3e-43
Identities = 92/163 (56%), Positives = 120/163 (73%)
Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62
+++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI
Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61
Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122
P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P
Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121
Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165
K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L
Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGL 164
>2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid
metabolism, fatty acid biosynthesis, multienzyme; 4.30A
{Sus scrofa} (C:)
Length = 342
Score = 146 bits (370), Expect = 1e-36
Identities = 91/162 (56%), Positives = 119/162 (73%)
Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62
+++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI
Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61
Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122
P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P
Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121
Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVC 164
K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V
Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVG 163
Score = 134 bits (338), Expect = 6e-33
Identities = 92/165 (55%), Positives = 120/165 (72%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60
+++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+D
Sbjct: 171 FVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELD 230
Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120
I P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P
Sbjct: 231 INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP 290
Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165
K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L
Sbjct: 291 TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGL 335
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase;
fatty acid biosynthesis, hot DOG fold, lyase; 2.50A
{Pseudomonas aeruginosa} (A:)
Length = 168
Score = 119 bits (298), Expect = 3e-28
Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 20/171 (11%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59
+ S E+ LP + P L+ R+ ++ G +RA
Sbjct: 7 HHHHSSGLVPRGSHXXDINEIR----EYLPHRYPFLLVDRVVELDIEGK-----RIRAYK 57
Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWL-----GELGKGRAVSVSNIKF 114
+++ N FF+ HF P+ PG L ++A Q G + V ++F
Sbjct: 58 NVSINEPFFNGHFPEHPIXPGVLIIEAXAQAAGILGFKXLDVKPADGTLYYFVGSDKLRF 117
Query: 115 RGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165
R V P +L + K + + + D V+ K + A ++
Sbjct: 118 RQPVLPGDQLQLH----AKFISVKRSIWKFDCHATVDDKPVCSA-EIICAE 163
>1z6b_A Pffabz, fatty acid synthesis protein; malaria,
beta-hydroxyacyl-ACP dehydratase, fatty acid
biosynthesis, SAD phasing, lyase; 2.09A {Plasmodium
falciparum} (A:)
Length = 154
Score = 117 bits (294), Expect = 1e-27
Identities = 34/170 (20%), Positives = 62/170 (36%), Gaps = 24/170 (14%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59
M N +S E+I LP + P L+ ++ + +
Sbjct: 4 MPNYDTSIDIEDIK------------KILPHRYPFLLVDKVIYMQPNKT------IIGLK 45
Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGR---AVSVSNIKFRG 116
++ N FF+ HF +MPG L ++AL QL G + K V ++++
Sbjct: 46 QVSTNEPFFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVRWKK 105
Query: 117 MVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLT 166
V P L + + + + G VNGK + +++ L+
Sbjct: 106 PVLPGDTL-TMQANLISF-KSSLGIAKLSGVGYVNGKVVINISEMTFALS 153
>3esi_A Uncharacterized protein; protein from erwinia carotovora
subsp. atroseptica (pectobacterium atrosepticum),
structural genomics; 2.50A {Pectobacterium atrosepticum}
(A:)
Length = 129
Score = 116 bits (291), Expect = 2e-27
Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 15/135 (11%)
Query: 32 PPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLT 91
P L+ H + + ET V + + P+L++F+ HF P++PG LD +
Sbjct: 3 PVELVRHDVKKTDETSQ------VELMLQVDPDLFWFNGHFTGQPLLPGVAQLDWVMHYA 56
Query: 92 GFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVN 151
L +S+ NIKF+ + P L + + + L + ++ +
Sbjct: 57 TTVLAQG-----WTFLSIENIKFQQPILPGKTL-RLVLIWHAGKQS---LTFSYSILEGD 107
Query: 152 GKEIYQANDLRVCLT 166
+ + +++
Sbjct: 108 TERTASSGKIKLTPI 122
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase;
FABZ, hot DOG fold, cytoplasm, lipid A biosynthesis,
lipid synthesis; HET: MSE; 2.59A {Campylobacter jejuni
subsp} (A:)
Length = 146
Score = 107 bits (269), Expect = 6e-25
Identities = 30/139 (21%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 27 AQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLD 85
LP + P L+ +IT++ V +I+ + F HF P+ PG L L+
Sbjct: 9 EILPHRYPFLLVDKITELKVKEV------VLGYKNISISDHVFXGHFPGHPIYPGVLILE 62
Query: 86 ALWQLTGFFLGWLGELGKGRA------VSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRV 139
Q G E + KFR V P +L +++ R
Sbjct: 63 GXAQTGGVLAFESXEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYE----XSVVKNRG 118
Query: 140 VLGAADGWVKVNGKEIYQA 158
G V+G + +A
Sbjct: 119 NXWIFKGQAFVDGNLVAEA 137
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein
dehydratase; lyase; 2.20A {Helicobacter pylori} PDB:
2glm_A* 2glp_A* 2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A*
3doy_A* 3doz_A* 3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
(A:)
Length = 171
Score = 106 bits (265), Expect = 2e-24
Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 32/174 (18%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59
+N +S + E IL+ LP + PML+ RIT++ + A
Sbjct: 17 HQNLQSQFFIEHILQI------------LPHRYPMLLVDRITELQANQK------IVAYK 58
Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGK--------GRAVSVSN 111
+IT N F+ HF N P+ PG L ++ + Q GF +++
Sbjct: 59 NITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDK 118
Query: 112 IKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165
+KFR VTP +L + ++L+ + ++ G +V+GK + +A +L+ +
Sbjct: 119 VKFRIPVTPGDRLEYH----LEVLKHKGMIWQVGGTAQVDGKVVAEA-ELKAMI 167
>1q6w_A Monoamine oxidase regulatory protein, putative; structural
genomics, nysgxrc T805, hot DOG fold; 2.81A
{Archaeoglobus fulgidus dsm 4304} (A:)
Length = 161
Score = 41.6 bits (97), Expect = 6e-05
Identities = 14/109 (12%), Positives = 29/109 (26%), Gaps = 6/109 (5%)
Query: 56 RAEMDITP---NLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGW-LGELGKGRAVSVSN 111
D P ++ F P+ G L L + + +
Sbjct: 41 YLTADFFPLHTDVEFAKKTIFGKPIAQGXLVLSIALGXVDQVILSNYDVSSVIAFFGIKD 100
Query: 112 IKFRGMVTPDCKL-VEYGIDFKKILRGRVVLGAADGWVK-VNGKEIYQA 158
++F V + + K+ + + VK G+ + A
Sbjct: 101 VRFLRPVFIGDTIAASAEVVEKQDFDEKSGVVTYKLEVKNQRGELVLTA 149
>2bi0_A Hypothetical protein RV0216; conserved hypothetical,
hotdog-fold, structural proteomics in europe, spine,
structural genomics; 1.9A {Mycobacterium tuberculosis}
(A:176-337)
Length = 162
Score = 40.1 bits (93), Expect = 2e-04
Identities = 9/109 (8%), Positives = 19/109 (17%), Gaps = 8/109 (7%)
Query: 56 RAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFR 115
R ++I D ++ G + L + +
Sbjct: 53 RLTLNIAA--THHDWRVSGRRLVYGGHTIGLALAQATRLLP-----NLATVLDWESCDHT 105
Query: 116 GMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVC 164
V L + V + + V
Sbjct: 106 APVHEGDTLYSELHIESAQAHADGGVLGLRSLVYAVSDSASEPDRQ-VL 153
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid
biosynthesis, malonyl/palmitoyl transferase,
phosphopantetheine, transferase; HET: GVL FMN; 3.10A
{Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*
(G:1261-1643)
Length = 383
Score = 34.8 bits (78), Expect = 0.007
Identities = 17/127 (13%), Positives = 35/127 (27%), Gaps = 15/127 (11%)
Query: 31 KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQL 90
P+ + T A + N HF + +PG + ++
Sbjct: 259 PIPIAVLDSYTPS--------TNEPYARVSGDLNPIHVSRHFASYANLPGTI-THGMFSS 309
Query: 91 TGFFLGWLGELGKGRAVSVS--NIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWV 148
+ V +F MV P+ L + I ++ GR ++
Sbjct: 310 ASVRALIENWAADSVSSRVRGYTCQFVDMVLPNTAL-KTSIQHVGMINGRKLI---KFET 365
Query: 149 KVNGKEI 155
+ +
Sbjct: 366 RNEDDVV 372
>3ir3_A HTD2, 3-hydroxyacyl-thioester dehydratase 2; structural
genomics, structural genomics consortium, SGC, lyase;
1.99A {Homo sapiens} (A:)
Length = 148
Score = 31.2 bits (70), Expect = 0.074
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 9/99 (9%)
Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120
+ N F + ++ G L + L G + G + + I F +
Sbjct: 46 LHLNEDFAKHTKFGNTIVHGVLINGLISALLGTKMPGPGCVFLSQ-----EISFPAPLYI 100
Query: 121 DCKL-VEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158
+ + K + + V + K + +
Sbjct: 101 GEVVLASAEVKKLKRFIAIIAV---SCSVIESKKTVMEG 136
>2c2i_A RV0130; hotdog, hydratase, lyase, structural proteomics in
europe, spine, structural genomics; 1.8A {Mycobacterium
tuberculosis} (A:)
Length = 151
Score = 26.6 bits (58), Expect = 1.8
Identities = 16/135 (11%), Positives = 30/135 (22%), Gaps = 15/135 (11%)
Query: 31 KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCL----GLDA 86
K + ITQ A D D + A
Sbjct: 17 KVGQSDWVTITQEE------VNLFADATGD--HQWIHVDPERAAAGPFGTTIAHGFXTLA 68
Query: 87 LWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKL-VEYGIDFKKILRGRVVLGAA- 144
L + + ++ ++F V ++ + + L V
Sbjct: 69 LLPRLQHQXYTVKGVKLAINYGLNKVRFPAPVPVGSRVRATSSLVGVEDLGNGTVQATVS 128
Query: 145 -DGWVKVNGKEIYQA 158
V+ + K A
Sbjct: 129 TTVEVEGSAKPACVA 143
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, zinc, structural genomics;
2.00A {Staphylococcus aureus subsp} (A:54-315)
Length = 262
Score = 26.0 bits (56), Expect = 3.2
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQ 89
++ + +K +P + +AL +
Sbjct: 211 DDIPGNNAIYKXNPPLRSTEDREALLE 237
>3gek_A Putative thioesterase YHDA; X-RAY, structure genomics, NESG,
KR113, Q9CHK5_lacla, structural genomics, PSI-2; 2.24A
{Lactococcus lactis subsp} (A:)
Length = 146
Score = 24.9 bits (54), Expect = 7.1
Identities = 12/140 (8%), Positives = 30/140 (21%), Gaps = 26/140 (18%)
Query: 26 NAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLD 85
N + ++ ++ H + + G L
Sbjct: 8 NITDFQVFTDENSDKFVSKI-------YKFSSKXILSDF------HAQPQGFLNGGASLA 54
Query: 86 ALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVV-LGAA 144
G +G N + + RG ++ G
Sbjct: 55 LAEITAGXASNAIGSGQYFAFGQSINANHLNPKKCEGFV---------NARGLLLKNGKR 105
Query: 145 DGWVKVNGKEIYQANDLRVC 164
+ ++ +I N+ +
Sbjct: 106 NHVWEI---KITDENETLIS 122
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger
subunit)); X-RAY crystallography, hydrogene metabolism,
periplasm; 1.60A {Desulfovibrio vulgaris subsp}
(L:145-222,L:286-421)
Length = 214
Score = 24.8 bits (54), Expect = 7.5
Identities = 12/43 (27%), Positives = 19/43 (44%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQI 43
+K KS Y + E + C G + G G +P M T++
Sbjct: 156 VKAGKSPYHFIEYMACPGGCVCGGGQPVMPGVLEAMDRTTTRL 198
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.143 0.457
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,445,287
Number of extensions: 64142
Number of successful extensions: 236
Number of sequences better than 10.0: 1
Number of HSP's gapped: 225
Number of HSP's successfully gapped: 25
Length of query: 172
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 90
Effective length of database: 2,184,039
Effective search space: 196563510
Effective search space used: 196563510
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.9 bits)