RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl
carrier protein) dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
(172 letters)
>1mka_A Beta-hydroxydecanoyl thiol ester dehydrase; fatty acid
biosynthesis; HET: DAC; 2.00A {Escherichia coli} SCOP:
d.38.1.2 PDB: 1mkb_A
Length = 171
Score = 202 bits (514), Expect = 5e-53
Identities = 93/166 (56%), Positives = 121/166 (72%)
Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62
+++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI
Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61
Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122
P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P
Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121
Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTID 168
K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L D
Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQD 167
>2cf2_C Fatty acid synthase, DH domain; transferase, fatty acid metabolism,
fatty acid biosynthesis, multienzyme; 4.30A {Sus scrofa}
SCOP: d.38.1.2
Length = 342
Score = 201 bits (512), Expect = 8e-53
Identities = 91/161 (56%), Positives = 119/161 (73%)
Query: 3 NRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMDIT 62
+++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+DI
Sbjct: 2 DKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDIN 61
Query: 63 PNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTPDC 122
P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P
Sbjct: 62 PDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTA 121
Query: 123 KLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRV 163
K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V
Sbjct: 122 KKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKV 162
Score = 177 bits (450), Expect = 1e-45
Identities = 92/165 (55%), Positives = 120/165 (72%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60
+++ SYT E++L G GE+FG QLP P MLM R+ +++ETGGN+++G V AE+D
Sbjct: 171 FVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELD 230
Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120
I P+LWFF CHF DPVMPGCLGLDA+WQL GF+LGWLG GKGRA+ V +KF G V P
Sbjct: 231 INPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLP 290
Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCL 165
K V Y I FK+I+ R+++G ADG V V+G+ IY A+DL+V L
Sbjct: 291 TAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGL 335
>2gll_A FABZ, (3R)-hydroxymyristoyl-acyl carrier protein dehydratase;
lyase; 2.20A {Helicobacter pylori} PDB: 2glm_A* 2glp_A*
2glv_A 3dp1_A* 3cf8_A* 3cf9_A* 3d04_A* 3doy_A* 3doz_A*
3dp0_A* 3b7j_A* 3dp2_A* 3dp3_A* 3ed0_A*
Length = 171
Score = 86.6 bits (214), Expect = 3e-18
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 31/166 (18%)
Query: 2 KNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEMD 60
+N +S + E IL+ LP + PML+ RIT++ + A +
Sbjct: 18 QNLQSQFFIEHILQI------------LPHRYPMLLVDRITELQANQK------IVAYKN 59
Query: 61 ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLG--------WLGELGKGRAVSVSNI 112
IT N F+ HF N P+ PG L ++ + Q GF + + +++ +
Sbjct: 60 ITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKV 119
Query: 113 KFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158
KFR VTP +L + ++L+ + ++ G +V+GK + +A
Sbjct: 120 KFRIPVTPGDRLEYH----LEVLKHKGMIWQVGGTAQVDGKVVAEA 161
>3esi_A Uncharacterized protein; protein from erwinia carotovora subsp.
atroseptica (pectobacterium atrosepticum), structural
genomics; 2.50A {Pectobacterium atrosepticum}
Length = 129
Score = 79.7 bits (196), Expect = 3e-16
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 31 KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDALWQL 90
P L+ H + + ET V + + P+L++F+ HF P++PG LD +
Sbjct: 2 LPVELVRHDVKKTDETSQ------VELMLQVDPDLFWFNGHFTGQPLLPGVAQLDWVMHY 55
Query: 91 TGFFLGWLGELGKGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRG 137
L +S+ NIKF+ + P L + + +
Sbjct: 56 ATTVLAQG-----WTFLSIENIKFQQPILPGKTL-RLVLIWHAGKQS 96
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty
acid biosynthesis, hot DOG fold, lyase; 2.50A
{Pseudomonas aeruginosa} SCOP: d.38.1.6
Length = 168
Score = 78.9 bits (194), Expect = 5e-16
Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 15/136 (11%)
Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87
LP + P L+ R+ ++ G +RA +++ N FF+ HF P+MPG L ++A+
Sbjct: 31 LPHRYPFLLVDRVVELDIEGKR-----IRAYKNVSINEPFFNGHFPEHPIMPGVLIIEAM 85
Query: 88 WQLTGFFLGWLGELGKGR-----AVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLG 142
Q G + ++ V ++FR V P +L F + R +
Sbjct: 86 AQAAGILGFKMLDVKPADGTLYYFVGSDKLRFRQPVLPGDQLQ-LHAKFISVKRS---IW 141
Query: 143 AADGWVKVNGKEIYQA 158
D V+ K + A
Sbjct: 142 KFDCHATVDDKPVCSA 157
>1z6b_A Pffabz, fatty acid synthesis protein; malaria, beta-hydroxyacyl-ACP
dehydratase, fatty acid biosynthesis, SAD phasing,
lyase; 2.09A {Plasmodium falciparum} SCOP: d.38.1.6 PDB:
1zhg_A 2oki_A 2okh_A
Length = 154
Score = 75.9 bits (186), Expect = 4e-15
Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 24/170 (14%)
Query: 1 MKNRKSSYTYEEILRCGEGEMFGEGNAQLP-KPPMLMFHRITQISETGGNYNQGVVRAEM 59
M N +S E+I + LP + P L+ ++ + +
Sbjct: 4 MPNYDTSIDIEDIKKI------------LPHRYPFLLVDKVIYMQPNKT------IIGLK 45
Query: 60 DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAV---SVSNIKFRG 116
++ N FF+ HF +MPG L ++AL QL G + K V ++++
Sbjct: 46 QVSTNEPFFNGHFPQKQIMPGVLQIEALAQLAGILCLKSDDSQKNNLFLFAGVDGVRWKK 105
Query: 117 MVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLT 166
V P L + + + + G VNGK + +++ L+
Sbjct: 106 PVLPGDTL-TMQANLISF-KSSLGIAKLSGVGYVNGKVVINISEMTFALS 153
>3d6x_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; FABZ, hot
DOG fold, cytoplasm, lipid A biosynthesis, lipid
synthesis; HET: MSE; 2.59A {Campylobacter jejuni subsp}
Length = 146
Score = 74.3 bits (182), Expect = 1e-14
Identities = 30/138 (21%), Positives = 50/138 (36%), Gaps = 17/138 (12%)
Query: 29 LP-KPPMLMFHRITQISETGGNYNQGVVRAEMDITPNLWFFDCHFKNDPVMPGCLGLDAL 87
LP + P L+ +IT++ V +I+ + F HF P+ PG L L+ +
Sbjct: 11 LPHRYPFLLVDKITELKVKEV------VLGYKNISISDHVFMGHFPGHPIYPGVLILEGM 64
Query: 88 WQLTGFFLGWLGELGKG------RAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVL 141
Q G E + KFR V P +L +++ R +
Sbjct: 65 AQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDYE----MSVVKNRGNM 120
Query: 142 GAADGWVKVNGKEIYQAN 159
G V+G + +A
Sbjct: 121 WIFKGQAFVDGNLVAEAE 138
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus
cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A
Length = 358
Score = 27.7 bits (60), Expect = 1.6
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
Query: 143 AADGWVKVNGKEIYQANDLRVCLTIDRGV 171
A G+ +G+EI AN++ V + G+
Sbjct: 1 AGGGYWHTSGREILDANNVPVRI---AGI 26
>1cjb_A Protein (hypoxanthine-guanine phosphoribosyltransferase); malaria,
purine salvage, transition state inhibitor; HET: IRP;
2.00A {Plasmodium falciparum} SCOP: c.61.1.1
Length = 231
Score = 25.7 bits (56), Expect = 5.2
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 4/59 (6%)
Query: 103 KGRAVSVSNIKFRGMVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDL 161
+ + F G PD +V Y +D+ +I R V GK+ Y+A L
Sbjct: 177 RTPLWNGFKADFVGFSIPDHFVVGYSLDYNEIFRDLDHCCL----VNDEGKKKYKATSL 231
>1y60_A Formaldehyde-activating enzyme FAE; pentamer, beta-alpha-beta
LEFT handed crossover, tetrahydromethanopterin-binding,
lyase; HET: H4M; 1.90A {Methylobacterium extorquens
AM1} SCOP: d.14.1.12 PDB: 1y5y_A*
Length = 169
Score = 25.1 bits (55), Expect = 8.2
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 28 QLPKPPMLMFHRIT-----QISETGGNYNQGVVRAEMD 60
KP LMF+++T Q + G GV A D
Sbjct: 59 LPCKPNTLMFNKVTINDARQAVQMFGPAQHGVAMAVQD 96
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.143 0.457
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,625,741
Number of extensions: 72486
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 20
Length of query: 172
Length of database: 5,693,230
Length adjustment: 86
Effective length of query: 86
Effective length of database: 3,608,246
Effective search space: 310309156
Effective search space used: 310309156
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.5 bits)