BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl
carrier protein) dehydratase [Candidatus Liberibacter asiaticus str.
psy62]
         (172 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 172

 Score =  358 bits (918), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60
           MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD
Sbjct: 1   MKNRKSSYTYEEILRCGEGEMFGEGNAQLPKPPMLMFHRITQISETGGNYNQGVVRAEMD 60

Query: 61  ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120
           ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP
Sbjct: 61  ITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGWLGELGKGRAVSVSNIKFRGMVTP 120

Query: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTIDRGVT 172
           DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTIDRGVT
Sbjct: 121 DCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQANDLRVCLTIDRGVT 172


>gi|254780770|ref|YP_003065183.1| (3R)-hydroxymyristoyl-ACP dehydratase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 161

 Score = 33.1 bits (74), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 7/102 (6%)

Query: 60  DITPNLWFFDCHFKNDPVMPGCLGLDALWQLTGFFLGW---LGELGKGRAVSVSNIKFRG 116
           ++T N   F  HF   PVMPG L L+ + Q  G          +      +S+   +FR 
Sbjct: 46  NVTFNEPHFMGHFPGRPVMPGVLILEGMAQTAGAICAIHNGFDQYAPPYLMSIDKARFRK 105

Query: 117 MVTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQA 158
            V P  +L EY ++    +R RV L       KV    + +A
Sbjct: 106 PVFPGDRL-EYHVN---KVRNRVDLWKFQCCAKVENTVVAEA 143


>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 427

 Score = 24.6 bits (52), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 118 VTPDCKLVEYGIDFKKILRGRVVLGAADGWVKVNGKEIYQ 157
           V P   +    +DF ++L GRV +      +    K+I+ 
Sbjct: 383 VDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.323    0.143    0.457 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117,425
Number of Sequences: 1233
Number of extensions: 4587
Number of successful extensions: 10
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 172
length of database: 328,796
effective HSP length: 68
effective length of query: 104
effective length of database: 244,952
effective search space: 25475008
effective search space used: 25475008
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 35 (18.1 bits)