HHsearch alignment for GI: 254780461 and conserved domain: PRK12404
>PRK12404 stage V sporulation protein AD; Provisional.
Probab=97.08 E-value=0.0021 Score=40.22 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999997534101332222333320563256763014567788875125221232001223323567787763122
Q gi|254780461|r 72 GTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKI 151 (406)
Q Consensus 72 ~~l~l~aa~~Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~gl 151 (406)
T Consensus 55 ~~m~~~A~~~al~Ka~l~~~d-----Id~~~aG------------DLlnQ-----------------~i~ssf~ar~l~i 100 (334)
T PRK12404 55 KKLFEEACSRATEKAKLRKDD-----IQFVLAG------------DLINQ-----------------ITPTSFAARTLGT 100 (334)
T ss_pred HHHHHHHHHHHHHHCCCCHHH-----CEEEEEC------------HHHHH-----------------HHHHHHHHHHCCC
T ss_conf 999999999999874999788-----6489612------------24432-----------------5787788986499
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 33333333334444334321001134560557887313456675322222212233467866223222356666641312
Q gi|254780461|r 152 RGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVIS 231 (406)
Q Consensus 152 ~Gp~~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~~~G~~~g 231 (406)
T Consensus 101 --Pf~GlyGACST~~E~L~laa~~vd~g~A~~vla~tSSH~~t-AErQFR~----P~Ey-----G~QrpptAqW--TV-- 164 (334)
T PRK12404 101 --PYLGLFGACSTSMEGLALGASIVNAKGAKYLLTGASSHNTA-VEKQFRY----PTEY-----GGQKPPTAQW--TV-- 164 (334)
T ss_pred --CEEEHHHHHHHHHHHHHHHHHHHHCCCHHHEEEEECCCCHH-HHHHCCC----CHHC-----CCCCCCCCCE--EE--
T ss_conf --80111356677899999999998466543502320445203-6654258----2211-----6779986627--88--
Q ss_pred CCEEEEECCCHHHHC-CCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCEEEE
Q ss_conf 651443112213201-10011232012210102652123443357789887542100---100210221
Q gi|254780461|r 232 GGAAVIVLEEMERAK-ARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSV---EEPVDYINT 296 (406)
Q Consensus 232 EGa~~~vLe~~~~A~-~rGa~i~a~i~g~~~~~d~~~~~~p~~~g~~~~i~~Al~~a---~~~i~~i~~ 296 (406)
T Consensus 165 TGaGa~il~~~~~~p~It~~T-iGkVvD~Gi~-D~~nMGaAMAPAA~dTI~~hf~D~g~~p~dYDlI~T 231 (334)
T PRK12404 165 TGAGAAILSKTGHGPRVTSAT-IGRVVDMGLT-DPFNMGGAMAPAAVDTIEAHLRDRQIDASYYDLIVT 231 (334)
T ss_pred ECEEEEEEECCCCCCEEEEEE-EEEEEECCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCEEEE
T ss_conf 761899994389997798987-7888765888-843025555478999999999970999234457996