HHsearch alignment for GI: 254780461 and conserved domain: TIGR02813
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432 Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=100.00 E-value=0 Score=520.57 Aligned_cols=396 Identities=22% Similarity=0.388 Sum_probs=337.1
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHCCCCCCEECC--CCCCCCC-----------CEEECC---EECCCHHHC-CCHHHHH
Q ss_conf 8999332670889899999999981887623367--7575478-----------512454---014786684-8989997
Q gi|254780461|r 4 VAVTGMGIVSSIGNNVSEVAISLREARSGITFSE--DFAKFGF-----------RCQVWG---KPLLNAAEL-IDRKAMR 66 (406)
Q Consensus 4 V~ItG~G~v~p~G~~~~e~w~~L~~G~sgi~~~~--~~~~~~~-----------~~~~~g---~~~~~~~~~-~~~~~~r 66 (406)
T Consensus 9 IAIVGMASiFA~s~~L~~fWD~I~e~iDAI~dVP~~~W~~dDYY~~d~~~aDKsYCKRGGF~PEvDF~PMEFGLPPNILE 88 (2773)
T TIGR02813 9 IAIVGMASIFANSRYLNKFWDLIFEKIDAITDVPSDHWAKDDYYDSDKSEADKSYCKRGGFLPEVDFNPMEFGLPPNILE 88 (2773)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 21013677765265566676665202100103732306764445678888875612468856763578653575851666
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCC-CCCCCCCCEEEECCCCCCCHHHHH-------HH--------------HHHHHCC
Q ss_conf 2499999999999997534101332-222333320563256763014567-------78--------------8875125
Q gi|254780461|r 67 FLSQGGTWGHLAMQEAITDSRLQPC-EITHERTGLIAGSGGPSTKCIVSA-------AD--------------LTREHCS 124 (406)
Q Consensus 67 ~~d~~~~l~l~aa~~Al~dAGl~~~-~~~~~r~gv~vgt~~g~~~~~~~~-------~~--------------~~~~~~~ 124 (406)
T Consensus 89 LTD~sQLLSLvVAkEVL~DA~lpd~sgYDRDkiGITLGvGGGQK~~~sL~aRLQyPVL~KV~K~SG~~d~D~~~lI~KF~ 168 (2773)
T TIGR02813 89 LTDISQLLSLVVAKEVLNDAKLPDDSGYDRDKIGITLGVGGGQKLSSSLNARLQYPVLKKVFKASGVEDEDSEMLIKKFQ 168 (2773)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 62288999999999998525788887876232025741476400022013220333688887415887646899999876
Q ss_pred CCCC--CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCC-CCCCCCCCCC
Q ss_conf 2212--320012233235677877631223333333333444433432100113456055788731345-6675322222
Q gi|254780461|r 125 TRRI--GPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQED-LDWTMSNLFD 201 (406)
Q Consensus 125 ~~~~--~p~~~~~~~~n~~a~~is~~~gl~Gp~~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~-~~~~~~~~f~ 201 (406)
T Consensus 169 ~~Yi~WEENSFPG~LGNVIsGRIANRFDlGG~NCVVDAACAGSLAA~~~Als~L~E~RSe~MI~GGVC~DNSP~MYMSFS 248 (2773)
T TIGR02813 169 DQYIHWEENSFPGSLGNVISGRIANRFDLGGMNCVVDAACAGSLAALRLALSELLEGRSEMMITGGVCTDNSPFMYMSFS 248 (2773)
T ss_pred HCCCCCCCCCCCCCCCCHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 21344414578976433010101100015884256666436679999999986302532145627532488873020236
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCC--CCCCCCHHHHHHH
Q ss_conf 21223346786622322235666664131265144311221320110011232012210102652--1234433577898
Q gi|254780461|r 202 AMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGD--DMVSPSGEGAIRC 279 (406)
Q Consensus 202 ~~~~ls~~~~~~p~~~~rPFd~~~~G~~~gEGa~~~vLe~~~~A~~rGa~i~a~i~g~~~~~d~~--~~~~p~~~g~~~~ 279 (406)
T Consensus 249 KTPAFTT~------E~I~PFD~DSKGMMIGEGIGM~AlKRLeDAERDGD~iYaV~KGvGaSSDGkFKSIYAPRP~GQAKA 322 (2773)
T TIGR02813 249 KTPAFTTN------EDIQPFDIDSKGMMIGEGIGMVALKRLEDAERDGDRIYAVIKGVGASSDGKFKSIYAPRPEGQAKA 322 (2773)
T ss_pred CCCCCCCC------CCCCCCCCCCCCCEECCCHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 78765678------853433145675443165555653321101058877899873101376873223217898446899
Q ss_pred HHHHHHHH---HCCCCEEEECCCCCCCCCCCHHHHHHCCCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 87542100---10021022102455544420012222023554-----43364752101323589999999999999871
Q gi|254780461|r 280 MRQALSSV---EEPVDYINTHGTATPKGDKKEVEAIREVFKGN-----IPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQE 351 (406)
Q Consensus 280 i~~Al~~a---~~~i~~i~~hgtgt~~~D~~E~~ai~~~f~~~-----~~~v~s~K~~~GH~~gasG~~~~~~~~~~l~~ 351 (406)
T Consensus 323 L~RAYdDAGF~P~~~GliEAHGTGT~AGD~AEF~GL~~~FS~dNd~~QHIALGSVKSQiGH~Ks~AG~AG~IKA~LALHH 402 (2773)
T TIGR02813 323 LKRAYDDAGFAPHTVGLIEAHGTGTAAGDVAEFSGLVSVFSQDNDQKQHIALGSVKSQIGHTKSTAGTAGLIKAVLALHH 402 (2773)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHCCCCHHHCCCCCCCCCEEECCHHHCCCCCHHHHCCHHHHHHHHHHHH
T ss_conf 87546432799751100621677764122023314300103664102421012301102311121010028999998630
Q ss_pred CCCCCCCCCCCCCCCCC--CCC-CCCCCCCCC------CCCEEEEECCCCCCEEEEEEEEECC
Q ss_conf 84078688888976678--887-379988558------8358999355677736799999427
Q gi|254780461|r 352 RFIGESKNIEEIDPEFK--GIP-IVRKRIDNA------KIDTVLSNSFGFGGTNATLVFRRYK 405 (406)
Q Consensus 352 g~ipp~~n~~~~~~~~~--~l~-~v~~~~~~~------~~~~al~~s~GfGG~n~~~vl~~~~ 405 (406)
T Consensus 403 KVLP~T~~v~~PN~~L~Ie~SP~YLN~~tRPW~~R~Dg~PRRAGiSSFGFGGTNfH~VLEEY~ 465 (2773)
T TIGR02813 403 KVLPPTINVDKPNPKLDIENSPFYLNTETRPWMQREDGTPRRAGISSFGFGGTNFHLVLEEYS 465 (2773)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 257872001686784564467742156788642156857852442243677741357730357