HHsearch alignment for GI: 254780461 and conserved domain: TIGR02845
>TIGR02845 spore_V_AD stage V sporulation protein AD; InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation ..
Probab=97.96 E-value=1.1e-05 Score=54.54 Aligned_cols=190 Identities=20% Similarity=0.249 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999975341013322223333205632567630145677888751252212320012233235677877631223
Q gi|254780461|r 73 TWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIR 152 (406)
Q Consensus 73 ~l~l~aa~~Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~gl~ 152 (406)
T Consensus 52 ~lm~~Av~~aL~Ka~l~~~---PP~vD~~LA------------GDLLNQ-----------------~~~anFvAR~L~i- 98 (331)
T TIGR02845 52 KLMEDAVNLALKKANLKKD---PPDVDFFLA------------GDLLNQ-----------------IITANFVARELGI- 98 (331)
T ss_pred HHHHHHHHHHHHHCCCCCC---CCCEEEEEH------------HHHHHH-----------------HHHHHHHHHHCCC-
T ss_conf 9999999998753587127---872111201------------036667-----------------8999898874588-
Q ss_pred CCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECC
Q ss_conf 33333333344443343210011345605578873134566753222222122334678662232223566666413126
Q gi|254780461|r 153 GTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISG 232 (406)
Q Consensus 153 Gp~~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~~~G~~~gE 232 (406)
T Consensus 99 -PflGLygACsTs~E~L~~gA~lv~GGfAd~vLaAtSSHy~t-aERQFRY-------PTE--yG~Qkp~tAq~--TV--T 163 (331)
T TIGR02845 99 -PFLGLYGACSTSMETLALGAMLVDGGFADRVLAATSSHYAT-AERQFRY-------PTE--YGVQKPPTAQW--TV--T 163 (331)
T ss_pred -CCEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHH-HHHHCCC-------CCC--CCCCCCCCCCC--CE--E
T ss_conf -82340213578999999999998320022111121111353-2210256-------512--56115998861--25--0
Q ss_pred CEEEEECCCHHHHCC-CCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHH---CCCCEEEECCCCCCCCCCCH
Q ss_conf 514431122132011-00112320122101026521234433577898875421001---00210221024555444200
Q gi|254780461|r 233 GAAVIVLEEMERAKA-RGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSVE---EPVDYINTHGTATPKGDKKE 308 (406)
Q Consensus 233 Ga~~~vLe~~~~A~~-rGa~i~a~i~g~~~~~d~~~~~~p~~~g~~~~i~~Al~~a~---~~i~~i~~hgtgt~~~D~~E 308 (406)
T Consensus 164 GAGA~~l~~~~~~~~it~aT~-GkV~D~G~~-dP~~mG~AMAPAAaDTI~~Hf~dtg~~~~DYDLIv---T----GDL~r 234 (331)
T TIGR02845 164 GAGAVLLASTGGGPRITSATI-GKVVDLGLT-DPLDMGAAMAPAAADTIEAHFKDTGRSVDDYDLIV---T----GDLAR 234 (331)
T ss_pred HHHEEEECCCCCCCEEEEEEE-EEEEECCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE---E----CCHHH
T ss_conf 346486544789436414530-147712336-86411354126899999999987078804013678---7----33002
Q ss_pred H--HHHHCCCCCC
Q ss_conf 1--2222023554
Q gi|254780461|r 309 V--EAIREVFKGN 319 (406)
Q Consensus 309 ~--~ai~~~f~~~ 319 (406)
T Consensus 235 vG~~I~~~LL~e~ 247 (331)
T TIGR02845 235 VGSEILRKLLKEE 247 (331)
T ss_pred HHHHHHHHHHHHH
T ss_conf 1489999998886