HHsearch alignment for GI: 254780461 and conserved domain: cd00827
>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes. They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.
Probab=99.49 E-value=1.2e-12 Score=97.99 Aligned_cols=284 Identities=19% Similarity=0.198 Sum_probs=157.4
Q ss_pred CEEEEEEEEECCCC-CCHHHHHHHHHCCCCCCEECCCCCCCCCCEEECCEECCCHHHCCCHHHHHHCCHHHHHHHHHHHH
Q ss_conf 28999332670889-89999999998188762336775754785124540147866848989997249999999999999
Q gi|254780461|r 3 RVAVTGMGIVSSIG-NNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELIDRKAMRFLSQGGTWGHLAMQE 81 (406)
Q Consensus 3 rV~ItG~G~v~p~G-~~~~e~w~~L~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~r~~d~~~~l~l~aa~~ 81 (406)
T Consensus 1 ~v~I~~~g~y~P~~~v~~~~~~~~~--~~~---~--~~~~~Gi~~r~~a~~~---------------e~~~~ma~~Aa~~ 58 (324)
T cd00827 1 DVGIEAIGAYLPRYRVDNEELAEGL--GVD---P--GKYTTGIGQRHMAGDD---------------EDVPTMAVEAARR 58 (324)
T ss_pred CCCEEEEEEECCCCEECHHHHHHHH--CCH---H--HHCCCCCEEEEECCCC---------------CCHHHHHHHHHHH
T ss_conf 9368799997899479599999884--952---7--6502470389967999---------------9999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCC
Q ss_conf 753410133222233332056325676301456778887512522123200122332356778776312233-3333333
Q gi|254780461|r 82 AITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRG-TSYSISS 160 (406)
Q Consensus 82 Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~gl~G-p~~ti~~ 160 (406)
T Consensus 59 aL~~a~~~~~~Idl----li~~s~~~~------------------~~--------~-p~~a~~i~~~Lgl~~~~~~di~~ 107 (324)
T cd00827 59 ALERAGIDPDDIGL----LIVATESPI------------------DK--------G-KSAATYLAELLGLTNAEAFDLKQ 107 (324)
T ss_pred HHHHCCCCHHHCCE----EEEECCCCC------------------CC--------C-CCHHHHHHHHHCCCCCEEEEECC
T ss_conf 99984989889979----999325778------------------67--------9-74999999985899971886014
Q ss_pred CCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEEECC
Q ss_conf 34444334321001134560557887313456675322222212233467866223222356666641312651443112
Q gi|254780461|r 161 ACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLE 240 (406)
Q Consensus 161 acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~~~G~~~gEGa~~~vLe 240 (406)
T Consensus 108 ~C~g~~~aL~~A~~~l~~g~~~~~LVv~~e~~s~~~------------------------~~~~~~~~~~GDgAaA~ll~ 163 (324)
T cd00827 108 ACYGGTAALQLAANLVESGPWRYALVVASDIASYLL------------------------DEGSALEPTLGDGAAAMLVS 163 (324)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCC------------------------CCCCCCCCCCCCCCEEEEEE
T ss_conf 220479999999988754876514787401101246------------------------77987664457722899982
Q ss_pred CHHHHCCCCCCCCCEEEEEEEECCCC---------CCCCC-------------C----------HHHHHHHHHHHHHHH-
Q ss_conf 21320110011232012210102652---------12344-------------3----------357789887542100-
Q gi|254780461|r 241 EMERAKARGAKIYAELTGYGSTCDGD---------DMVSP-------------S----------GEGAIRCMRQALSSV- 287 (406)
Q Consensus 241 ~~~~A~~rGa~i~a~i~g~~~~~d~~---------~~~~p-------------~----------~~g~~~~i~~Al~~a- 287 (406)
T Consensus 164 ~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 237 (324)
T cd00827 164 RNPGILAAG--IVST----HSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIAKVVRKALDRAG 237 (324)
T ss_pred CCCCCCCCC--EEEE----EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 278655554--0367----7501566544444567888777543210022224441789999999999999999999849
Q ss_pred -HCCCCEEEECCCCCCCCCCCHHHHHHCCCCC--CCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf -1002102210245554442001222202355--443364--75210132358999999999999987184078688888
Q gi|254780461|r 288 -EEPVDYINTHGTATPKGDKKEVEAIREVFKG--NIPYIQ--STKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEE 362 (406)
Q Consensus 288 -~~~i~~i~~hgtgt~~~D~~E~~ai~~~f~~--~~~~v~--s~K~~~GH~~gasG~~~~~~~~~~l~~g~ipp~~n~~~ 362 (406)
T Consensus 238 ~~~~~~~~~~hq~~~~~i----~~~~~~~l~~~~~~~~~~~~~~~~~~Gn~~sasi~~~L~~---~l~~g~l~------- 303 (324)
T cd00827 238 LSEDIDYFVPHQPNGKKI----LEAVAKKLGGPPEKASQTRWILLRRVGNMYAASILLGLAS---LLESGKLK------- 303 (324)
T ss_pred CCHHHHHEEECCCCHHHH----HHHHHHHCCCCHHHCCCCHHHHCCCCCCHHHHHHHHHHHH---HHHCCCCC-------
T ss_conf 975441243257637899----9999998399656513516465168414489899999999---99729999-------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEE
Q ss_conf 976678887379988558835899935567773679999
Q gi|254780461|r 363 IDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVF 401 (406)
Q Consensus 363 ~~~~~~~l~~v~~~~~~~~~~~al~~s~GfGG~n~~~vl 401 (406)
T Consensus 304 ------------------~Gd~vll~~~G~G~s~~~~vl 324 (324)
T cd00827 304 ------------------AGDRVLLFSYGSGFTAEAFVL 324 (324)
T ss_pred ------------------CCCEEEEEEECHHHHHHHECC
T ss_conf ------------------849999999906831551119