HHsearch alignment for GI: 254780461 and conserved domain: cd00833
>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.
Probab=100.00 E-value=0 Score=661.60 Aligned_cols=386 Identities=28% Similarity=0.410 Sum_probs=338.6
Q ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHCCCCCCEECC--CCCCCCCC----------EEECC----EECCCHHHC-CCHHH
Q ss_conf 728999332670889899999999981887623367--75754785----------12454----014786684-89899
Q gi|254780461|r 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSE--DFAKFGFR----------CQVWG----KPLLNAAEL-IDRKA 64 (406)
Q Consensus 2 ~rV~ItG~G~v~p~G~~~~e~w~~L~~G~sgi~~~~--~~~~~~~~----------~~~~g----~~~~~~~~~-~~~~~ 64 (406)
T Consensus 1 e~IaItG~g~~~P~g~~~~~fw~~L~~G~~~i~~~p~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~fd~~~f~i~~~e 80 (421)
T cd00833 1 EPIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGGFLDDVDAFDAAFFGISPRE 80 (421)
T ss_pred CCEEEEEEEEECCCCCCHHHHHHHHHCCCCEEECCCHHHCCHHHCCCCCCCCCCCCCCCCEECCCCCCCCHHHCCCCHHH
T ss_conf 98999810678989999999999998299877528957758432578643468865430345378342688665999999
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 97249999999999999753410133222233332056325676301456778887512522123200122332356778
Q gi|254780461|r 65 MRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASAT 144 (406)
Q Consensus 65 ~r~~d~~~~l~l~aa~~Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~ 144 (406)
T Consensus 81 a~~mdp~~rl~L~~a~eAl~dAG~~~~~~~~~r~GV~iG~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~a~~ 152 (421)
T cd00833 81 AEAMDPQQRLLLEVAWEALEDAGYSPESLAGSRTGVFVGASSSDYLE-------LLA-RDPDEIDAYAATGTSRAFLANR 152 (421)
T ss_pred HHHHCHHHHHHHHHHHHHHHHCCCCHHHCCCCCEEEEECCCCCCHHH-------HHH-CCCCCCCCCCCCCCCHHHHHHH
T ss_conf 98719999999999999997528983464886349996666664788-------974-2756578530135431179999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 77631223333333333444433432100113456055788731345-66753222222122334678662232223566
Q gi|254780461|r 145 LSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQED-LDWTMSNLFDAMGAMSSHFNHDPCSASRPYDS 223 (406)
Q Consensus 145 is~~~gl~Gp~~ti~~acaSgl~Al~~A~~~L~~G~~D~aivGg~d~-~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~ 223 (406)
T Consensus 153 is~~~~~~Gp~~~v~tACaSsl~Ai~~A~~~i~~G~~d~ai~Gg~~~~~~~~~~~~~~~~~~ls------~~~~~rpFD~ 226 (421)
T cd00833 153 ISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDGRCRPFDA 226 (421)
T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECEEEEECCHHHHHHHHHCCCCC------CCCCCCCCCC
T ss_conf 9999689996003353627999999999999857994354412000315868999986357868------9998567888
Q ss_pred CCCCEEECCCEEEEECCCHHHHCCCCCCCCCEEEEEEEECCCC--CCCCCCHHHHHHHHHHHHHHH---HCCCCEEEECC
Q ss_conf 6664131265144311221320110011232012210102652--123443357789887542100---10021022102
Q gi|254780461|r 224 RRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGD--DMVSPSGEGAIRCMRQALSSV---EEPVDYINTHG 298 (406)
Q Consensus 224 ~~~G~~~gEGa~~~vLe~~~~A~~rGa~i~a~i~g~~~~~d~~--~~~~p~~~g~~~~i~~Al~~a---~~~i~~i~~hg 298 (406)
T Consensus 227 ~~~G~v~gEGa~~lvLe~~~~A~~~g~~I~a~i~G~g~~~dg~~~~~~~P~~~~~~~~~~~al~~agi~~~~i~yieaHg 306 (421)
T cd00833 227 DADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHG 306 (421)
T ss_pred CCCCCCCCCCEEEECCCCHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 99986555751354368789998769947999989998068977788887566899999999997299944120899744
Q ss_pred CCCCCCCCCHHHHHHCCCCCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--C
Q ss_conf 455544420012222023554-----433647521013235899999999999998718407868888897667888--7
Q gi|254780461|r 299 TATPKGDKKEVEAIREVFKGN-----IPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEFKGI--P 371 (406)
Q Consensus 299 tgt~~~D~~E~~ai~~~f~~~-----~~~v~s~K~~~GH~~gasG~~~~~~~~~~l~~g~ipp~~n~~~~~~~~~~l--~ 371 (406)
T Consensus 307 tgT~~gD~~E~~ai~~~f~~~~~~~~~~~v~S~Ks~~GH~~~AaG~~~~i~~~lal~~~~iPpt~n~~~~~p~~~~~~~~ 386 (421)
T cd00833 307 TGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESP 386 (421)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76866699999999999612577778630235434534335767999999999998559828989989999889844476
Q ss_pred -CCCCCCCC----CCCCEEEEECCCCCCEEEEEEE
Q ss_conf -37998855----8835899935567773679999
Q gi|254780461|r 372 -IVRKRIDN----AKIDTVLSNSFGFGGTNATLVF 401 (406)
Q Consensus 372 -~v~~~~~~----~~~~~al~~s~GfGG~n~~~vl 401 (406)
T Consensus 387 ~~v~~~~~~w~~~~~~r~a~vnsfgfGG~Na~lvl 421 (421)
T cd00833 387 LRVPTEARPWPAPAGPRRAGVSSFGFGGTNAHVIL 421 (421)
T ss_pred EEECCCCCCCCCCCCCEEEEEECCCCCCEEEEEEC
T ss_conf 35107772488889844999906158874579979