HHsearch alignment for GI: 254780461 and conserved domain: pfam08392
>pfam08392 FAE1_CUT1_RppA FAE1/Type III polyketide synthase-like protein. The members of this family are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region featured in this family contains the active site residues, as well as motifs involved in substrate binding.
Probab=97.42 E-value=0.0017 Score=40.78 Aligned_cols=178 Identities=16% Similarity=0.190 Sum_probs=101.1
Q ss_pred CEEEEEEEEECCCC---CCHHHHHHHHHCC----------------CCCCEECCCCCCCCCCEEECCEECCCHHHCCCHH
Q ss_conf 28999332670889---8999999999818----------------8762336775754785124540147866848989
Q gi|254780461|r 3 RVAVTGMGIVSSIG---NNVSEVAISLREA----------------RSGITFSEDFAKFGFRCQVWGKPLLNAAELIDRK 63 (406)
Q Consensus 3 rV~ItG~G~v~p~G---~~~~e~w~~L~~G----------------~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 63 (406)
T Consensus 8 ~vYLvDfaC~kp~~~~kv~~~~~~e~~~~~~~f~~~s~~F~~kil~rSGlG~eTy~P~~~~~-----~p-------~~~s 75 (290)
T pfam08392 8 PVYLVDYACYKPPDDRKVSTETFMEHIRRNGKFDEESLDFQRKILERSGLGEETYVPRSVLE-----IP-------PNPT 75 (290)
T ss_pred CEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCC-----CC-------CCCC
T ss_conf 88998553207972031699999999986589986899999999996489998857825425-----89-------9987
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99724999999999999975341013322223333205632567630145677888751252212320012233235677
Q gi|254780461|r 64 AMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASA 143 (406)
Q Consensus 64 ~~r~~d~~~~l~l~aa~~Al~dAGl~~~~~~~~r~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~ 143 (406)
T Consensus 76 ~~~ar~Eae~v~f~avd~Lf~ktgv~P~-----dIdiLVvNcSlf--------------------~Pt-------PSLsa 123 (290)
T pfam08392 76 MAEAREEAEEVMFGAVDELFAKTGVRPR-----DIGILVVNCSLF--------------------NPT-------PSLSA 123 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHH-----HCCEEEEECCCC--------------------CCC-------CCHHH
T ss_conf 9999999999999999999997399876-----899999967788--------------------888-------52899
Q ss_pred HHHHHHCCCCCC--CCCCC-CCCCCCCCCCCEECCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 877631223333--33333-344443343210011345605578873134566753222222122334678662232223
Q gi|254780461|r 144 TLSTWFKIRGTS--YSISS-ACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRP 220 (406)
Q Consensus 144 ~is~~~gl~Gp~--~ti~~-acaSgl~Al~~A~~~L~~G~~D~aivGg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rP 220 (406)
T Consensus 124 mivNrykmR~di~s~nLsGMGCSAglIsIdLAk~lL~~~~ns~ALVvSTE~it~n~Y~G~~rsmLl~N---------c-- 192 (290)
T pfam08392 124 MIVNRYKMRGDIKSYNLSGMGCSAGLISIDLAKDLLQVHPNTYALVVSTENITPNWYAGNDRSMLLPN---------C-- 192 (290)
T ss_pred HHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCHHHHCCC---------C--
T ss_conf 99886068643006336676511347579999999984899659999853045445358736650140---------1--
Q ss_pred CCCCCCCEEECCCEEEEECCCHH
Q ss_conf 56666641312651443112213
Q gi|254780461|r 221 YDSRRDGFVISGGAAVIVLEEME 243 (406)
Q Consensus 221 Fd~~~~G~~~gEGa~~~vLe~~~ 243 (406)
T Consensus 193 --------LFR~GgAAiLLSN~~ 207 (290)
T pfam08392 193 --------LFRMGGAAILLSNKP 207 (290)
T ss_pred --------CCCCCCEEEEEECCC
T ss_conf --------135771479830584