RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780461|ref|YP_003064874.1| 3-oxoacyl-(acyl carrier
protein) synthase I [Candidatus Liberibacter asiaticus str. psy62]
(406 letters)
>gnl|CDD|30652 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
metabolism / Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 412
Score = 424 bits (1091), Expect = e-119
Identities = 178/412 (43%), Positives = 241/412 (58%), Gaps = 10/412 (2%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAELI 60
MRRV +TG+GIVSS+GN V EV +L +SGI F G ++ G + + + I
Sbjct: 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPITRFDASGLGVKIAG-EIKDLDDQI 60
Query: 61 DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR 120
+K RF+ + +A EA+ D+ L R G+ GSG + I D
Sbjct: 61 AKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALL 120
Query: 121 EHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGK 180
+RI PF VPK + + A+ ++ F ++G +Y+ +ACAT AH IG+A LI+ GK
Sbjct: 121 LEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIGDAVRLIRLGK 180
Query: 181 QDIMFAGGQED-LDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVL 239
D++ AGG E + F+AM A+S+ N DP ASRP+D RDGFVI GA +VL
Sbjct: 181 ADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEKASRPFDKNRDGFVIGEGAGALVL 239
Query: 240 EEMERAKARGAKIYAELTGYGSTCDGDDMVSPS--GEGAIRCMRQALSSVE---EPVDYI 294
EE+E A ARGAKIYAE+ GYG+T D + +P+ GEGAIR MR AL+ E +DYI
Sbjct: 240 EELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADAGLTPEDIDYI 299
Query: 295 NTHGTATPKGDKKEVEAIREVF--KGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQER 352
N HGT+TP DK E AI+ VF + STKSLTGH+LGAAGA EAI L+ +++
Sbjct: 300 NAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEAIISLLALRDG 359
Query: 353 FIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRY 404
I + N++ DPE + +V + LSNSFGFGGTNA+LVF+RY
Sbjct: 360 IIPPTINLDNPDPEAADLDVVPNEARTGAVRAALSNSFGFGGTNASLVFKRY 411
>gnl|CDD|29421 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
synthase (KAS), type I and II. KASs are responsible for
the elongation steps in fatty acid biosynthesis. KASIII
catalyses the initial condensation and KAS I and II
catalyze further elongation steps by Claisen
condensation of malonyl-acyl carrier protein (ACP) with
acyl-ACP..
Length = 406
Score = 408 bits (1051), Expect = e-114
Identities = 174/409 (42%), Positives = 243/409 (59%), Gaps = 12/409 (2%)
Query: 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK-PLLNAAELI 60
RRV +TG+G V+ +GN V E +L RSGI F GF ++ G+ P + + +
Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPITRFDASGFPSRIAGEVPDFDPEDYL 60
Query: 61 DRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTR 120
DRK +R + + + A +EA+ D+ L P E+ ER G++ GSG I A
Sbjct: 61 DRKELRRMDRFAQFALAAAEEALADAGLDPEELDPERIGVVIGSGIGGLATIEEAYRALL 120
Query: 121 EHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGK 180
E RR+ PF VP A+ + A+ ++ +RG +Y++S+ACA+ AH IG+AA LI+ G+
Sbjct: 121 EK-GPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDAARLIRLGR 179
Query: 181 QDIMFAGGQE-DLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVL 239
D++ AGG E + F A+ A+S+ + DP ASRP+D RDGFV+ GA V+VL
Sbjct: 180 ADVVIAGGAEALITPLTLAGFAALRALSTRND-DPEKASRPFDKDRDGFVLGEGAGVLVL 238
Query: 240 EEMERAKARGAKIYAELTGYGSTCDGDDMVSPS--GEGAIRCMRQALSSVE---EPVDYI 294
E +E AKARGAKIYAE+ GYG++ D + +P GEGA R MR AL+ E +DYI
Sbjct: 239 ESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGLSPEDIDYI 298
Query: 295 NTHGTATPKGDKKEVEAIREVFKGNI--PYIQSTKSLTGHSLGAAGAQEAIYCLIMMQER 352
N HGT+TP D E +AI+ VF + + STKS+TGH LGAAGA EAI L+ +++
Sbjct: 299 NAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIATLLALRDG 358
Query: 353 FIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVF 401
+ + N+EE DPE + V A I LSNSFGFGG NA+LVF
Sbjct: 359 VLPPTINLEEPDPEC-DLDYVPNEAREAPIRYALSNSFGFGGHNASLVF 406
>gnl|CDD|36608 KOG1394, KOG1394, KOG1394, 3-oxoacyl-(acyl-carrier-protein)
synthase (I and II) [Lipid transport and metabolism,
Secondary metabolites biosynthesis, transport and
catabolism].
Length = 440
Score = 320 bits (821), Expect = 5e-88
Identities = 161/420 (38%), Positives = 230/420 (54%), Gaps = 17/420 (4%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK-PLLNAAEL 59
MRRV +TGMG V+ +GN V +L SGI+ E V GK P + +
Sbjct: 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDY 82
Query: 60 IDRKAMRFLSQGGTWGHLAMQEAITDSRLQP---CEITHERTGLIAGSGGPSTKCIVSAA 116
+ + R +S+ A +EA+ D+ L E E+TG++ G+G + I A
Sbjct: 83 VSKGDERRMSKFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETA 142
Query: 117 DLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELI 176
E RR+ PF VPK +++ A+ +S + +RG ++S+S+ACAT HCIG+A I
Sbjct: 143 QNLSEKGY-RRVSPFFVPKILTNMAAGYVSMKYGLRGPNHSVSTACATGNHCIGDAFNFI 201
Query: 177 QSGKQDIMFAGGQED-LDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAA 235
+ G D+M AGG E ++ F A+S+ N +P ASRP+D +RDGFV+ GA
Sbjct: 202 RLGDADVMLAGGSEACINPLSLAGFSRARALSTR-NDNPQKASRPFDKKRDGFVMGEGAG 260
Query: 236 VIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSP--SGEGAIRCMRQALSSV---EEP 290
V+VLEE+E AK RGA IYAE+ GYG + D + SP G GA+ M +AL E
Sbjct: 261 VLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKDAGLSPED 320
Query: 291 VDYINTHGTATPKGDKKEVEAIREVFKGN--IPYIQSTKSLTGHSLGAAGAQEAIYCLIM 348
+DY+N H T+TP GD E EAI+ VF + + STK GH LGAAGA EAI+ ++
Sbjct: 321 IDYVNAHATSTPLGDAAEAEAIKRVFGEHNIASKVSSTKGAIGHLLGAAGAVEAIFTVLA 380
Query: 349 MQERFIGESKNIEEIDPEF---KGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLVFRRYK 405
+ + + + N+E DP ++ K+ LSNSFGFGGTNA+L F ++K
Sbjct: 381 INDGVLPPTLNLENPDPGVDLDYVPLKASEKKGGNKVRVALSNSFGFGGTNASLCFAKFK 440
>gnl|CDD|73238 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
Family of enzymes that catalyze the formation of a new
carbon-carbon bond by a decarboxylating Claisen-like
condensation reaction. Members are involved in the
synthesis of fatty acids and polyketides, a diverse
group of natural products. Both pathways are an
iterative series of additions of small carbon units,
usually acetate, to a nascent acyl group. There are 2
classes of decarboxylating condensing enzymes, which can
be distinguished by sequence similarity, type of active
site residues and type of primer units (acetyl CoA or
acyl carrier protein (ACP) linked units)..
Length = 332
Score = 226 bits (578), Expect = 6e-60
Identities = 132/333 (39%), Positives = 184/333 (55%), Gaps = 19/333 (5%)
Query: 73 TWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFA 132
G A + AI D+ L + G++ G+GG S + V AD + R +GP+
Sbjct: 13 ILGFEAAERAIADAGLSREYQKNPIVGVVVGTGGGSPRFQVFGAD------AMRAVGPYV 66
Query: 133 VPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDL 192
V KAM AS ++T I G +Y +S+ACA S H + AA+ +Q+GKQDI+ AGG E+L
Sbjct: 67 VTKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEEL 126
Query: 193 DWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKI 252
M FDAMGA+S+ P ASR +D+ DGFV GA +V+EE+E A ARGA I
Sbjct: 127 AAPMDCEFDAMGALST-----PEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHI 181
Query: 253 YAELTGYGSTCDGDDMVS--PSGEGAIRCMRQALSSV---EEPVDYINTHGTATPKGDKK 307
YAE+ G +T DG M + PS EG R ++AL+ +DY+ HGT TP GD K
Sbjct: 182 YAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVK 241
Query: 308 EVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEF 367
E++ +R F P + +TK++TG+ AA ++M++ FI S +IEE+D
Sbjct: 242 ELKLLRSEFGDKSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDEAG 301
Query: 368 KGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLV 400
I ++ T L N FG GGTNATLV
Sbjct: 302 LNIVT---ETTPRELRTALLNGFGLGGTNATLV 331
>gnl|CDD|29415 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
subclass of decarboxylating condensing enzymes,
including beta-ketoacyl [ACP] synthase, type I and II
and polyketide synthases.They are characterized by the
utlization of acyl carrier protein (ACP) thioesters as
primer substrates, as well as the nature of their active
site residues..
Length = 407
Score = 221 bits (565), Expect = 2e-58
Identities = 142/413 (34%), Positives = 202/413 (48%), Gaps = 21/413 (5%)
Query: 2 RRVAVTGMGIVSSIGNN---VSEVAISLREARSGITFSEDFAKFGFRCQVWGKPLLNAAE 58
RV +TG+G+VS G V E +LRE RSGI K F V G+
Sbjct: 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARL-KSRFDRGVAGQIPTGDIP 59
Query: 59 LIDRKAMRFLSQGGTWGHLAMQEAITDSRLQPCEITH-ERTGLIAGSGGPSTKCIVSAAD 117
D K + + +A +EA+ D+ + H G++ GSG + +
Sbjct: 60 GWDAKRTGIVDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGGLRFLRRGGK 119
Query: 118 LTREHCSTRRIGPFAVPKAM--SSTASATLSTWFKI-RGTSYSISSACATSAHCIGNAAE 174
L R + P+ PK M +T + ++ G + ACAT+ + A E
Sbjct: 120 LDA-----RAVNPYVSPKWMLSPNTVAGWVNILLLSSHGPIKTPVGACATALEALDLAVE 174
Query: 175 LIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGA 234
I+SGK DI+ GG ED + F MGA+S+ +P SRP+D RDGFV + GA
Sbjct: 175 AIRSGKADIVVVGGVEDPLEEGLSGFANMGALSTAEE-EPEEMSRPFDETRDGFVEAEGA 233
Query: 235 AVIVLEEMERAKARGAKIYAELTGYGSTCDG-DDMVSPSGEGAIRCMRQALSSVE---EP 290
V+VLE E A ARGA IY + G ST DG V G+G R +R AL+ +
Sbjct: 234 GVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPAGGKGIARAIRTALAKAGLSLDD 293
Query: 291 VDYINTHGTATPKGDKKEVEAIREVFK--GNIPYIQSTKSLTGHSLGAAGAQEAIYCLIM 348
+D I+ HGT+TP D E AI EV G + + K+L GHS GAAGA + I L
Sbjct: 294 LDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGALQLIGALQS 353
Query: 349 MQERFIGESKNIEEIDPEFKGIPIV-RKRIDNAKIDTVLSNSFGFGGTNATLV 400
++ I + N++++DP+ + + +V R N K+ L N+FGFGG+NA LV
Sbjct: 354 LEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVNAFGFGGSNAALV 406
>gnl|CDD|29420 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits..
Length = 421
Score = 170 bits (432), Expect = 7e-43
Identities = 96/339 (28%), Positives = 149/339 (43%), Gaps = 32/339 (9%)
Query: 81 EAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSST 140
EA+ D+ P + RTG+ G+ L I +A +
Sbjct: 97 EALEDAGYSPESLAGSRTGVFVGASSSDY--------LELLARDPDEIDAYAATGTSRAF 148
Query: 141 ASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQE-DLDWTMSNL 199
+ +S +F +RG S ++ +AC++S + A + ++SG+ D+ GG L M
Sbjct: 149 LANRISYFFDLRGPSLTVDTACSSSLVALHLACQSLRSGECDLALVGGVNLILSPDMFVG 208
Query: 200 FDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGY 259
F G +S P RP+D+ DG+V G V+VL+ + A G +IYA + G
Sbjct: 209 FSKAGMLS------PDGRCRPFDADADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGS 262
Query: 260 GSTCDGDD--MVSPSGEGAIRCMRQALSSVE---EPVDYINTHGTATPKGDKKEVEAIRE 314
DG + +PSGE +R+A + +DY+ HGT TP GD EVEA+ +
Sbjct: 263 AVNQDGRTKGITAPSGEAQAALIRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAK 322
Query: 315 VFKGNIP-----YIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEE----IDP 365
VF G+ I S KS GH AAG I ++ ++ I + + E ID
Sbjct: 323 VFGGSRSADQPLLIGSVKSNIGHLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDF 382
Query: 366 EFKGIPIVRKRID---NAKIDTVLSNSFGFGGTNATLVF 401
E + + + A +SFGFGGTNA ++
Sbjct: 383 EESPLRVPTEARPWPAPAGPRRAGVSSFGFGGTNAHVIL 421
>gnl|CDD|143886 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains. The N-terminal domain contains most of the
structures involved in dimer formation and also the
active site cysteine.
Length = 243
Score = 152 bits (385), Expect = 2e-37
Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 18/253 (7%)
Query: 1 MRRVAVTGMGIVSSIGNNVSEVAISLREARSGIT-FSEDFAKFGFRCQVWGK-PLLNAAE 58
VA+TGMG G E L R I F D + +V G+ +
Sbjct: 1 AEPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYGFDFDA 60
Query: 59 LIDRKAMRFLSQGGTWGHLAMQ---EAITDSRLQPCEITH-ERTGLIAGSGGPSTKCIVS 114
+ R LA++ EA+ D+ L P + +RTG+ GSG + +
Sbjct: 61 AFFGISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYAELQA 120
Query: 115 AADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSAHCIGNAA- 173
RR P+ M S A+ +S +RG S ++ +AC++S +AA
Sbjct: 121 LDSAGGP----RRGSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSS-LVALHAAV 175
Query: 174 ELIQSGKQDIMFAGGQE-DLDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISG 232
I+ G+ D+ AGG E L F A GA+ S PC A P+ DGFV
Sbjct: 176 RSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLS--PDGPCKAFDPFA---DGFVRGE 230
Query: 233 GAAVIVLEEMERA 245
G ++L+E+ A
Sbjct: 231 GVGAVLLKELSEA 243
>gnl|CDD|73194 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
catalyze a (decarboxylating or non-decarboxylating)
Claisen-like condensation reaction. Members are share
strong structural similarity, and are involved in the
synthesis and degradation of fatty acids, and the
production of polyketides, a diverse group of natural
products..
Length = 254
Score = 134 bits (339), Expect = 3e-32
Identities = 94/333 (28%), Positives = 128/333 (38%), Gaps = 93/333 (27%)
Query: 73 TWGHLAMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFA 132
G A ++AI D+ L G+I G+ G S +
Sbjct: 9 ELGFEAAEQAIADAGLS----KGPIVGVIVGTTGGSGE---------------------- 42
Query: 133 VPKAMSSTASATLSTWFKIR-GTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQED 191
S A+ L+ I G +YS++ ACAT + A + +Q+GK DI+ AGG E+
Sbjct: 43 -----FSGAAGQLAYHLGISGGPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE 97
Query: 192 LDWTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAK 251
FV GAA V+E E A RGA
Sbjct: 98 ------------------------------------FVFGDGAAAAVVESEEHALRRGAH 121
Query: 252 IYAELTGYGSTCDGDDMVS-PSGEGAIRCMRQALSSV---EEPVDYINTHGTATPKGDKK 307
AE+ +T DG MV SGEG R R+AL +DY+ HGT TP GD
Sbjct: 122 PQAEIVSTAATFDGASMVPAVSGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAV 181
Query: 308 EVEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEF 367
E+ + P + +T +TGH LGAAG L+M++ FI +
Sbjct: 182 ELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILDELLLMLEHEFIPPTP--------- 232
Query: 368 KGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLV 400
+ TVL FG GGTNA +V
Sbjct: 233 ------------REPRTVLLLGFGLGGTNAAVV 253
>gnl|CDD|33130 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 132 bits (332), Expect = 2e-31
Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 31/341 (9%)
Query: 81 EAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAMSST 140
EA+ D+ + P + TG+ AG+ ++ A D +A+ SS
Sbjct: 101 EALEDAGIYPDSLRGSATGVFAGASVADYLLLLLADD--------EAEPEYAITGNSSSV 152
Query: 141 ASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN-L 199
A+ +S + G S ++ +AC++S + A + ++ G+ D+ AGG + S+ L
Sbjct: 153 AAGRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYL 212
Query: 200 FDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAELTGY 259
F A G +S + +D+ DG+V GA V+VL+ + A+ G +IYA + G
Sbjct: 213 FSAGGMLSPDGR------CKAFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGS 266
Query: 260 GSTCDG--DDMVSPSGEGAIRCMRQALSSVE---EPVDYINTHGTATPKGDKKEVEAIRE 314
DG + + +P+ E +R+AL+ V Y+ HGT TP GD E A+
Sbjct: 267 AVNQDGRSNGLTAPNLEAQADVIREALADAGIDPATVQYVEAHGTGTPLGDPIEANALGA 326
Query: 315 VFKGNIP----YIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPE--FK 368
V+ P I S KS GH AAG I + ++ +I + + + +PE F
Sbjct: 327 VYGEGAPAQPCAIGSVKSNIGHLEAAAGIAGLIKTALALKHGYIPPTLHFDTPNPEIDFD 386
Query: 369 GIPIV-----RKRIDNAKIDTVLSNSFGFGGTNATLVFRRY 404
P V +SFGFGGTNA ++
Sbjct: 387 SSPFVVPTEATPWPTGGGPRRAGVSSFGFGGTNAHVILEEA 427
>gnl|CDD|29419 cd00832, CLF, Chain-length factor (CLF) is a factor required for
polyketide chain initiation of aromatic
antibiotic-producing polyketide synthases (PKSs) of
filamentous bacteria. CLFs have been shown to have
decarboxylase activity towards malonyl-acyl carrier
protein (ACP). CLFs are similar to other elongation
ketosynthase domains, but their active site cysteine is
replaced by a conserved glutamine..
Length = 399
Score = 119 bits (300), Expect = 1e-27
Identities = 107/415 (25%), Positives = 181/415 (43%), Gaps = 33/415 (7%)
Query: 2 RRVAVTGMGIVSSIGNNVSEVAISLREARSGITFSEDFAKFGFRCQVWGK-PLLNAAELI 60
RR VTG+G+V+ G V E ++ + RSG+ F G+ ++ G+ P +AAE +
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPITRFDPSGYPARLAGEVPDFDAAEHL 60
Query: 61 DRKAMRFLSQGGTWGHLAM---QEAITDSRLQPCEITHERTGLI--AGSGGPSTKCIVSA 115
R L Q LA+ A+ D+ + P + G++ + +GG
Sbjct: 61 PG---RLLPQTDRMTRLALAAADWALADAGVDPAALPPYDMGVVTASAAGG--------F 109
Query: 116 ADLTREHCSTRRIGPFAVPKAMS-----STASATLSTWFKIRGTSYSISSACATSAHCIG 170
RE GP V S + + +S +RG S + + A +
Sbjct: 110 EFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVAEQAGGLDALA 169
Query: 171 NAAELIQSGKQDIMFAGGQEDLD-WTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFV 229
A L++ G ++ G L W + G +S+ + DP A P+D+ G+V
Sbjct: 170 QARRLVRRGTPLVVSGGVDSALCPWGWVAQL-SSGRLST--SDDPARAYLPFDAAAAGYV 226
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSV-- 287
G A++VLE+ A+ RGA++Y E+ GY +T D S G R +R AL+
Sbjct: 227 PGEGGAILVLEDAAAARERGARVYGEIAGYAATFDPPPG-SGRPPGLARAIRLALADAGL 285
Query: 288 -EEPVDYINTHGTATPKGDKKEVEAIREVF-KGNIPYIQSTKSLTGHSLGAAGAQEAIYC 345
E VD + P+ D+ E A+ VF +P + + K++TG +
Sbjct: 286 TPEDVDVVFADAAGVPELDRAEAAALAAVFGPRGVP-VTAPKTMTGRLYAGGAPLDVATA 344
Query: 346 LIMMQERFIGESKNIEEIDPEFKGIPIVRKRIDNAKIDTVLSNSFGFGGTNATLV 400
L+ +++ I + N+ ++ P + G+ +V R A + T L + G GG N+ LV
Sbjct: 345 LLALRDGVIPPTVNVTDVPPAY-GLDLVTGRPRPAALRTALVLARGRGGFNSALV 398
>gnl|CDD|145778 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
domain. The structure of beta-ketoacyl synthase is
similar to that of the thiolase family (pfam00108) and
also chalcone synthase. The active site of beta-ketoacyl
synthase is located between the N and C-terminal
domains.
Length = 117
Score = 107 bits (270), Expect = 5e-24
Identities = 37/110 (33%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 253 YAELTGYGSTCDGDDMVS---PSGEGAIRCMRQALSSVE---EPVDYINTHGTATPKGDK 306
YA + G DG P+G R +R AL+ E VDY+ HGT TP GD
Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60
Query: 307 KEVEAIREVFKGNIP--YIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFI 354
E EA++ VF + S KS GH AAG I ++ ++ I
Sbjct: 61 IEAEALKAVFGPGRRPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVI 110
>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
related proteins [Lipid transport and metabolism].
Length = 2376
Score = 106 bits (267), Expect = 8e-24
Identities = 92/339 (27%), Positives = 150/339 (44%), Gaps = 32/339 (9%)
Query: 78 AMQEAITDSRLQPCEITHERTGLIAGSGGPSTKCIVSAADLTREHCSTRRIGPFAVPKAM 137
A EAI D+ + P ++ RTG+ G G T +S T S V
Sbjct: 94 ATWEAIVDAGINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTG----CVRAMF 149
Query: 138 SSTASATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQD-IMFAGGQEDLDWTM 196
++ S T F +G S+S+ +AC++S + NA + I+SG+ D + AG L T
Sbjct: 150 ANRISYT----FDFQGPSFSVDTACSSSLMALQNAFQDIRSGQCDAAIVAGANLILKPTT 205
Query: 197 SNLFDAMGAMSSHFNHDPCSASRPYDSRRDGFVISGGAAVIVLEEMERAKARGAKIYAEL 256
S F +G +S P + + +D +G+ S G ++L+ A+ ++YA +
Sbjct: 206 SLQFLRLGMLS------PDGSCKAFDEAGNGYCRSEGVVAVLLQRKSLAR----RVYATI 255
Query: 257 TGYGSTCDG---DDMVSPSGEGAIRCMRQALSSV---EEPVDYINTHGTATPKGDKKEVE 310
+ DG + PSG+ + +R+ S E V Y+ HGT T GD +E
Sbjct: 256 LNARTNTDGFKEQGVTFPSGDMQEQLIRETYSEAGLNPESVVYVEAHGTGTKVGDPQEAN 315
Query: 311 AIREVF---KGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEF 367
I F + I S KS GH+ A+G L+ M+E I + + +PE
Sbjct: 316 GITRFFCATRTTPLLIGSVKSNMGHAEPASGVCALAKILLSMEEGLIPPNLHYNTPNPEI 375
Query: 368 KGIPIVRKRIDNAKI----DTVLSNSFGFGGTNATLVFR 402
+ R ++ + + V NSFGFGG+NA ++ +
Sbjct: 376 PALVDGRLKVVDRPLPWRGGIVGINSFGFGGSNAHVILK 414
>gnl|CDD|29411 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
the reversible thiolytic cleavage of 3-ketoacyl-CoA into
acyl-CoA and acetyl-CoA, a 2-step reaction involving a
covalent intermediate formed with a catalytic cysteine.
They are found in prokaryotes and eukaryotes (cytosol,
microbodies and mitochondria). There are 2 functional
different classes: thiolase-I (3-ketoacyl-CoA thiolase)
and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
can cleave longer fatty acid molecules and plays an
important role in the beta-oxidative degradation of
fatty acids. Thiolase-II has a high substrate
specificity. Although it can cleave acetoacyl-CoA, its
main function is the synthesis of acetoacyl-CoA from two
molecules of acetyl-CoA, which gives it importance in
several biosynthetic pathways..
Length = 386
Score = 40.1 bits (94), Expect = 0.001
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNL-FDAMGAMSSHFNHDP 214
+++ C + + AA+ I +G+ D++ AGG E +MS + A
Sbjct: 78 TTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVE----SMSRAPYLLPKARRGGRLGLN 133
Query: 215 CSASRPYDSRRDGF 228
D D F
Sbjct: 134 TLDGMLDDGLTDPF 147
Score = 31.6 bits (72), Expect = 0.35
Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 230 ISGGAAVIVLEEMERAKARGAKIYAELTGYGST-CDGDDMVSPSGEGAIRCMRQAL 284
I+ GAA ++L E+AK G K A + GY D M G G + + +AL
Sbjct: 244 INDGAAAVLLMSEEKAKELGLKPLARIVGYAVAGVDPAIM----GIGPVPAIPKAL 295
>gnl|CDD|143885 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is
reported to be structurally related to beta-ketoacyl
synthase (pfam00109), and also chalcone synthase.
Length = 264
Score = 34.2 bits (79), Expect = 0.073
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 158 ISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN 198
I+ C + + AA+ I++G DI+ AGG E +MSN
Sbjct: 84 INKVCGSGLKAVALAAQAIRAGDADIVVAGGVE----SMSN 120
>gnl|CDD|30057 cd01314, D-HYD, D-hydantoinases (D-HYD) also called
dihydropyrimidases (DHPase) and related proteins;
DHPases are a family of enzymes that catalyze the
reversible hydrolytic ring opening of the amide bond in
five- or six-membered cyclic diamides, like
dihydropyrimidine or hydantoin. The hydrolysis of
dihydropyrimidines is the second step of reductive
catabolism of pyrimidines in human. The hydrolysis of
5-substituted hydantoins in microorganisms leads to
enantiomerically pure N-carbamyl amino acids, which are
used for the production of antibiotics, peptide
hormones, pyrethroids, and pesticides. HYDs are
classified depending on their stereoselectivity. This
family also includes collapsin response regulators
(CRMPs), cytosolic proteins involved in neuronal
differentiation and axonal guidance which have strong
homology to DHPases, but lack most of the active site
residues..
Length = 447
Score = 33.2 bits (76), Expect = 0.13
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 239 LEEMERAKARGAKIYAELTGYGSTCDGDDMVSPSGEGAIRCMRQALSSVEEP 290
+E+ RA+ +G +Y E D D EGA L E+
Sbjct: 244 ADEIARARKKGLPVYGETCPQYLLLDDSDYWKDWFEGAKYVCSPPLRPKEDQ 295
>gnl|CDD|36604 KOG1390, KOG1390, KOG1390, Acetyl-CoA acetyltransferase [Lipid
transport and metabolism].
Length = 396
Score = 33.0 bits (75), Expect = 0.15
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSN 198
+++ CA+ + AA+ IQ+G DI+ AGG E +MSN
Sbjct: 86 TTVNKVCASGMKAVILAAQSIQTGHADIVVAGGME----SMSN 124
>gnl|CDD|30532 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
Length = 392
Score = 32.6 bits (74), Expect = 0.18
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 155 SYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLF--DAMGAMSSHFNH 212
+ +++ ACA+ + AA+ I SG+ D++ AGG E + + +
Sbjct: 85 AVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPMGREGVRVLDSAVDPMFE 144
Query: 213 DP 214
DP
Sbjct: 145 DP 146
>gnl|CDD|37149 KOG1938, KOG1938, KOG1938, Protein with predicted involvement in
meiosis (GSG1) [Cell cycle control, cell division,
chromosome partitioning].
Length = 960
Score = 29.6 bits (66), Expect = 1.5
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 107 PSTKCIVSAADLTREHCSTRRIGPFAVPKAMSSTASATLSTWFKIRGTSYSISSACATSA 166
T I+ A++ + TR IGPF K + T S S TS IS T+
Sbjct: 850 MDTIVILWKANVVNDEGVTRFIGPFVKLKKLFKTDSCLSSLRISCETTSKEISH---TAD 906
Query: 167 HCIGNAAELIQSGKQD 182
H L+ S
Sbjct: 907 HLCELPITLLISNNDL 922
>gnl|CDD|114026 pfam05277, DUF726, Protein of unknown function (DUF726). This
family consists of several uncharacterized eukaryotic
proteins.
Length = 343
Score = 29.7 bits (67), Expect = 1.5
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 309 VEAIREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIYCLIMMQERFIGESKNIEEIDPEFK 368
+A+ G P L G SLGA + YCL+ + +R ++ + E +
Sbjct: 207 ADALISRNLGVRPVT-----LIGFSLGA---RVIFYCLLELAKR---KAYGLIE-NVILL 254
Query: 369 GIPIVRKRIDNAKIDTVLSNSF 390
G P +K +V+S F
Sbjct: 255 GAPATSDAKVWSKARSVVSGRF 276
>gnl|CDD|73362 cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic
enzyme that catalyzes the interconversion of
dihydroxyacetone phosphate and
D-glyceraldehyde-3-phosphate. The reaction is very
efficient and requires neither cofactors nor metal ions.
TIM, usually homodimeric, but in some organisms
tetrameric, is ubiqitous and conserved in function
across eukaryotes, bacteria and archaea..
Length = 242
Score = 29.8 bits (67), Expect = 1.5
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 289 EPVDYINTHGTATPKGDKKEVEAIREVFKGNIPYI-QSTKSLTGHSLGAAGAQEAIYC 345
EPV I T TA+P+ ++ IR++ + + + L G S+ A E +
Sbjct: 162 EPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQ 219
>gnl|CDD|34005 COG4283, COG4283, Uncharacterized conserved protein [Function
unknown].
Length = 170
Score = 29.6 bits (66), Expect = 1.6
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)
Query: 145 LSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAM- 203
L+ WF + S+ A + ELI + +F W + A
Sbjct: 88 LNQWFWKKYQHLSLKELKAKLNKNHNDVYELIDEFSNEELFTKHYR--KWADNTTLGAYF 145
Query: 204 -GAMSSHFN 211
+ SH+N
Sbjct: 146 ESSKFSHYN 154
>gnl|CDD|73213 cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that
can hydrolyze long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation," the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site. .
Length = 229
Score = 29.0 bits (64), Expect = 2.3
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 8/39 (20%)
Query: 309 VEAIREVFKGNIPYIQSTKS--------LTGHSLGAAGA 339
A + ++ +P ++S +TGHSLG A A
Sbjct: 104 YSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGALA 142
>gnl|CDD|30060 cd01317, DHOase_IIa, Dihydroorotase (DHOase), subgroup IIa; DHOases
catalyze the reversible interconversion of carbamoyl
aspartate to dihydroorotate, a key reaction in
pyrimidine biosynthesis. This subgroup also contains
proteins that lack the active site, like unc-33, a
C.elegans protein involved in axon growth..
Length = 374
Score = 28.3 bits (63), Expect = 4.1
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 12/79 (15%)
Query: 239 LEEMERAKARGAKIYAE-----LTGYGSTCDGDDM---VSPS--GEGAIRCMRQALSSVE 288
LE + +AKA+G + AE L + D V+P E + +AL +
Sbjct: 199 LELIRKAKAKGLPVTAEVTPHHLLLDDEALESYDTNAKVNPPLRSEEDREALIEALK--D 256
Query: 289 EPVDYINTHGTATPKGDKK 307
+D I + +K
Sbjct: 257 GTIDAIASDHAPHTDEEKD 275
>gnl|CDD|35502 KOG0281, KOG0281, KOG0281, Beta-TrCP (transducin repeats
containing)/Slimb proteins [Function unknown].
Length = 499
Score = 28.1 bits (62), Expect = 4.3
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 54 LNAAELIDRKAMRFLSQGGTWGHLAMQEAITDS 86
L A EL+ ++ R LS G W L + TDS
Sbjct: 99 LCACELVCKEWKRVLSDGMLWKKLIERMVRTDS 131
>gnl|CDD|39367 KOG4165, KOG4165, KOG4165, Gamma-glutamyl phosphate reductase
[Amino acid transport and metabolism].
Length = 433
Score = 28.0 bits (62), Expect = 4.7
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 275 GAIRCMRQALSSVEEPVDYINTHGTATPKGDKKEVEAIREVFKGNI 320
G++ C + + SV+ +D+I+THG++ E EA E F ++
Sbjct: 308 GSLECTIEVVDSVQSAIDHIHTHGSSHTDCIVTENEATAEHFLKHV 353
>gnl|CDD|176532 cd08590, PI-PLCc_Rv2075c_like, Catalytic domain of uncharacterized
Mycobacterium tuberculosis Rv2075c-like proteins. This
subfamily corresponds to the catalytic domain present in
uncharacterized Mycobacterium tuberculosis Rv2075c and
its homologs. Members in this family are more closely
related to the Streptomyces antibioticus
phosphatidylinositol-specific phospholipase
C1(SaPLC1)-like proteins rather than the typical
bacterial phosphatidylinositol-specific phospholipase C
(PI-PLC, EC 4.6.1.13), which participate in
Ca2+-independent PI metabolism, hydrolyzing the membrane
lipid phosphatidylinositol (PI) to produce
phosphorylated myo-inositol and diacylglycerol (DAG). In
contrast, SaPLC1-like proteins have two Ca2+-chelating
amino acid substitutions which convert them to
metal-dependent bacterial PI-PLC. Rv2075c and its
homologs have the same amino acid substitutions as well,
which might suggest they have metal-dependent PI-PLC
activity.
Length = 267
Score = 28.1 bits (63), Expect = 4.9
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 8/91 (8%)
Query: 138 SSTASATLSTWFKIRGTSYSISSACATSAHCIGNA---AELIQSGKQDIMFAGGQEDLDW 194
+A L+ F G S C + N +++ SGKQ ++ GG
Sbjct: 122 DDELNALLNDAF---GDLLYTPSDCDD-LQGLPNWPTKEDMLNSGKQVVLATGGGCSGAQ 177
Query: 195 TMSNLFDAMGAMSSHFNHDP-CSASRPYDSR 224
M N + S+F P C+ + ++
Sbjct: 178 GMYNRKEFADTQPSNFRPYPECAFAMGNNTS 208
>gnl|CDD|39769 KOG4569, KOG4569, KOG4569, Predicted lipase [Lipid transport and
metabolism].
Length = 336
Score = 27.7 bits (61), Expect = 5.4
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 329 LTGHSLGAAGAQEAIYCLIMMQERF 353
+TGHSLG A A A L+ +
Sbjct: 175 VTGHSLGGALASLAALDLVKNGLKT 199
>gnl|CDD|36606 KOG1392, KOG1392, KOG1392, Acetyl-CoA acetyltransferase [Lipid
transport and metabolism].
Length = 465
Score = 27.7 bits (61), Expect = 5.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 143 ATLSTWFKIRGTSYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQE 190
A L F + +++++ AC +S + LI +G D++ AGG E
Sbjct: 109 AALLAGFSDKTPAHTVTMACISSNVAMTTGMGLIATGNADVIVAGGVE 156
>gnl|CDD|176703 cd08355, Glo_EDI_BRP_like_14, This conserved domain belongs to a
superfamily including the bleomycin resistance protein,
glyoxalase I, and type I ring-cleaving dioxygenases.
This protein family belongs to a conserved domain
superfamily that is found in a variety of structurally
related metalloproteins, including the bleomycin
resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases. A bound metal ion is
required for protein activities for the members of this
superfamily. A variety of metal ions have been found in
the catalytic centers of these proteins including
Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The
structures of this family demonstrate domain swapping,
which is shared by glyoxalase I and antibiotic
resistance proteins.
Length = 122
Score = 27.6 bits (62), Expect = 6.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 216 SASRPYDSRRDGFVISGGAAVIVLEE-----MERAKARGAKIYAELTG--YGS 261
S Y + +G V V+ + ERA+A GA+I E T YGS
Sbjct: 52 SVRDDYRASSARAGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGS 104
>gnl|CDD|145099 pfam01764, Lipase_3, Lipase (class 3).
Length = 141
Score = 27.3 bits (61), Expect = 6.9
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 329 LTGHSLGAAGAQEAIYCLIMMQERFIGESKNI 360
+TGHSLG A A A + E + S I
Sbjct: 67 VTGHSLGGALASLAAA---DLAENGLFPSSRI 95
>gnl|CDD|36856 KOG1643, KOG1643, KOG1643, Triosephosphate isomerase [Carbohydrate
transport and metabolism].
Length = 247
Score = 27.6 bits (61), Expect = 7.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 289 EPVDYINTHGTATPKGDKKEVEAIREVFKGNI--PYIQSTKSLTGHSLGAAGAQE 341
EPV I T TATP+ ++ IR+ K N+ ST+ + G S+ +E
Sbjct: 164 EPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNGGNCKE 218
>gnl|CDD|146120 pfam03323, GerA, Bacillus/Clostridium GerA spore germination
protein.
Length = 468
Score = 27.4 bits (62), Expect = 7.1
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 10/50 (20%)
Query: 349 MQERFIGE-SKN------IEEI-DPEFKGIPIVRKRIDNAKIDTVLSNSF 390
++E +GE SK IE+I +P+ + V+KR+ ID +L + +
Sbjct: 156 IEELTVGERSKTDVAIAYIEDIANPDL--VEEVKKRLKKIDIDGILDSGY 203
>gnl|CDD|114294 pfam05563, SpvD, Salmonella plasmid virulence protein SpvD. This
family consists of several SpvD plasmid virulence
proteins from different Salmonella species.
Length = 216
Score = 27.4 bits (60), Expect = 7.4
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 194 WTMSNLFDAMGAMSSHFNHDPCSASRPYDSRRD 226
W SN+ ++ + HF+ R YD + D
Sbjct: 184 WKTSNILPSLQEIKKHFSSSGEFYVRAYDEKHD 216
>gnl|CDD|29806 cd00741, Lipase, Lipase. Lipases are esterases that can hydrolyze
long-chain acyl-triglycerides into di- and
monoglycerides, glycerol, and free fatty acids at a
water/lipid interface. A typical feature of lipases is
"interfacial activation", the process of becoming active
at the lipid/water interface, although several examples
of lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site..
Length = 153
Score = 27.5 bits (60), Expect = 7.7
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 309 VEAIREVFKGNIPYIQSTKS--------LTGHSLGAAGAQEA 342
+A R + +P ++S + +TGHSLG A A A
Sbjct: 4 YKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLA 45
>gnl|CDD|29735 cd01016, TroA, Metal binding protein TroA. These proteins have been
shown to function as initial receptors in ABC transport
of Zn2+ and possibly Fe3+ in many eubacterial species.
The TroA proteins belong to the TroA superfamily of
periplasmic metal binding proteins that share a distinct
fold and ligand binding mechanism. A typical TroA
protein is comprised of two globular subdomains
connected by a single helix and can bind the metal ion
in the cleft between these domains. In addition, these
proteins sometimes have a low complexity region
containing a metal-binding histidine-rich motif
(repetitive HDH sequence)..
Length = 276
Score = 27.2 bits (60), Expect = 7.8
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 17/93 (18%)
Query: 259 YGSTCDGDDMVSPSGEGAIRCMRQALSSVEEPVDYINTHG-------TATPKGDKKEVEA 311
YG G +S E +R + E VD I ++ + K +EA
Sbjct: 178 YGFEVKGLQGISTDSEAGLR-------DINELVDLIVERKIKAIFVESSVNQ---KSIEA 227
Query: 312 IREVFKGNIPYIQSTKSLTGHSLGAAGAQEAIY 344
+++ K +Q L ++G G E Y
Sbjct: 228 LQDAVKARGHDVQIGGELYSDAMGEEGTSEGTY 260
>gnl|CDD|36620 KOG1406, KOG1406, KOG1406, Peroxisomal 3-ketoacyl-CoA-thiolase
P-44/SCP2 [Lipid transport and metabolism].
Length = 408
Score = 27.3 bits (60), Expect = 8.1
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 156 YSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLD 193
Y++++ CAT + + A ++I+SG D + A G E ++
Sbjct: 81 YNVNNNCATGSSALFLAKQIIESGNSDCVLALGFEKME 118
>gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
carrier protein (SCP)-x isoform and related proteins;
SCP-2 has multiple roles in intracellular lipid
circulation and metabolism. The N-terminal presequence
in the SCP-x isoform represents a peroxisomal
3-ketacyl-Coa thiolase specific for branched-chain acyl
CoAs, which is proteolytically cleaved from the sterol
carrier protein..
Length = 375
Score = 27.2 bits (60), Expect = 8.8
Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 155 SYSISSACATSAHCIGNAAELIQSGKQDIMFAGGQEDLDWTMSNLFDAMGAMSSHFNHDP 214
+ + +A A+ + + AA I SG D++ G E MS++ A + +
Sbjct: 70 ATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAE----KMSDVPTGDEAGGRASDLEW 125
Query: 215 CSASRPY 221
P
Sbjct: 126 EGPEPPG 132
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,731,926
Number of extensions: 243979
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 670
Number of HSP's successfully gapped: 44
Length of query: 406
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,189,273
Effective search space: 1298674630
Effective search space used: 1298674630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)