HHsearch alignment for GI: 254780462 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=97.34 E-value=0.00094 Score=42.63 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=49.7
Q ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 98756887899938898852589999999989988999948978999999998515964999877999999999999999
Q gi|254780462|r 1 MINILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIK 80 (267)
Q Consensus 1 mm~~L~gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~ 80 (267)
T Consensus 1 ~~~~~~~k~vlV~GlG~---sG~a~a~~L~~~G~~V~~~D~~~~~-~~~~~l~~~~~~~~~~-~g~~~~~---------- 65 (501)
T PRK02006 1 MFGDRQRPMVLVLGLGE---SGLAMARWCARHGCRLRVADTREAP-PNLAALQAEGIDAEFV-GGAFDPA---------- 65 (501)
T ss_pred CCCCCCCCEEEEEEECH---HHHHHHHHHHHCCCEEEEEECCCCC-CCHHHHHHCCCCCEEE-CCCCCHH----------
T ss_conf 97666898399983368---8999999999789849999899998-6199998608981897-7889867----------
Q ss_pred HHHCCCCEEEECCCCCCC
Q ss_conf 983798899936833177
Q gi|254780462|r 81 ERWETLDFVVHSIAFSDK 98 (267)
Q Consensus 81 ~~~g~iD~lVnnAg~~~~ 98 (267)
T Consensus 66 -~~~~~d~vV~SPGI~p~ 82 (501)
T PRK02006 66 -LLDGVELVALSPGLSPL 82 (501)
T ss_pred -HHCCCCEEEECCEECCC
T ss_conf -84689999989900888