HHsearch alignment for GI: 254780462 and conserved domain: PRK02006

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=97.34  E-value=0.00094  Score=42.63  Aligned_cols=82  Identities=17%  Similarity=0.174  Sum_probs=49.7

Q ss_pred             CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf             98756887899938898852589999999989988999948978999999998515964999877999999999999999
Q gi|254780462|r    1 MINILKGKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIK   80 (267)
Q Consensus         1 mm~~L~gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   80 (267)
T Consensus         1 ~~~~~~~k~vlV~GlG~---sG~a~a~~L~~~G~~V~~~D~~~~~-~~~~~l~~~~~~~~~~-~g~~~~~----------   65 (501)
T PRK02006          1 MFGDRQRPMVLVLGLGE---SGLAMARWCARHGCRLRVADTREAP-PNLAALQAEGIDAEFV-GGAFDPA----------   65 (501)
T ss_pred             CCCCCCCCEEEEEEECH---HHHHHHHHHHHCCCEEEEEECCCCC-CCHHHHHHCCCCCEEE-CCCCCHH----------
T ss_conf             97666898399983368---8999999999789849999899998-6199998608981897-7889867----------


Q ss_pred             HHHCCCCEEEECCCCCCC
Q ss_conf             983798899936833177
Q gi|254780462|r   81 ERWETLDFVVHSIAFSDK   98 (267)
Q Consensus        81 ~~~g~iD~lVnnAg~~~~   98 (267)
T Consensus        66 -~~~~~d~vV~SPGI~p~   82 (501)
T PRK02006         66 -LLDGVELVALSPGLSPL   82 (501)
T ss_pred             -HHCCCCEEEECCEECCC
T ss_conf             -84689999989900888