HHsearch alignment for GI: 254780462 and conserved domain: TIGR01777
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=98.16 E-value=4.6e-05 Score=50.64 Aligned_cols=215 Identities=13% Similarity=0.095 Sum_probs=115.5
Q ss_pred EEEECC-CCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH-HHHCCCC
Q ss_conf 999388-98852589999999989988999948978999999998515964999877999999999999999-9837988
Q gi|254780462|r 10 GLIMGV-ANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIK-ERWETLD 87 (267)
Q Consensus 10 ~lItGa-s~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~-~~~g~iD 87 (267)
T Consensus 1 ~litGgnTGf--iG~~L~~~L~~~g~~V~~l~R~~~~~~~~~--~~~~-------~~~~~~~~~g~~~~~~~W~~l~~~D 69 (307)
T TIGR01777 1 ILITGGNTGF--IGRALTQRLTKSGHEVTILTRSPQAESNTK--KVGY-------KNWLAEGKLGIVIAESGWSALEGAD 69 (307)
T ss_pred CEECCCCCCH--HHHHHHHHHHHCCCEEEEEEECCCCCCCHH--CCCC-------CCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 9641533023--789999999847998999961686432000--2554-------4555522124520722056678862
Q ss_pred EEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCC--CCCCCEEEEEEEEEECCCCCCCCCCHHHH-H
Q ss_conf 99936833177655576125799999776501661123222100222--44684168988752014564321000001-5
Q gi|254780462|r 88 FVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQL--MPHGGAMITLTYGGSMRVVPNYNAMAPAK-S 164 (267)
Q Consensus 88 ~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~--~~~~G~II~isS~~~~~~~~~~~~Y~asK-a 164 (267)
T Consensus 70 aviNLAG~~i----~~P-~RWt~~~K~~i~~SRi~~T~~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~ 144 (307)
T TIGR01777 70 AVINLAGEPI----ADP-KRWTEERKQEIRDSRIDTTRALVEAIAAAPRAEQKPKVFISASAVGYYGHSEDRVFTEEDAS 144 (307)
T ss_pred EEEECCCCCC----CCC-CCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEEECCCCCCEEECCCCC
T ss_conf 7985568885----778-88787775756523347899999999846566788716885016663068998215116678
Q ss_pred H-HHHHHHHHHHHH-------HHHCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHCCCCC------CCCCHHHHHHHHH
Q ss_conf 6-776314779984-------2108589756228726855750798479999998268899------8766999999999
Q gi|254780462|r 165 A-LESSTKYLACDY-------GGMNIRINAISAGPVRTLAGASISNGRDIAAWSKENSPLK------RTVSLEDIGNSAL 230 (267)
Q Consensus 165 a-l~~ltr~lA~El-------~~~gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~Pl~------r~~~~edva~~v~ 230 (267)
T Consensus 145 ~~~ddFla~lc~~WE~~A~~a~~~g~Rvv~~R~G~VLg~~GGaL~~m~~pf~~glG-GplG~G~Q~~SWIH~~D~v~~I~ 223 (307)
T TIGR01777 145 GPGDDFLAELCRDWEEAAQAAEQLGTRVVLLRTGIVLGPKGGALAKMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLIL 223 (307)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHCC-CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 88777218999999998510533687389876413470898703454566765157-42368841450535889999999
Q ss_pred HHHCHHHCCCCCC
Q ss_conf 8619887887886
Q gi|254780462|r 231 YLLSYLSNGVTGE 243 (267)
Q Consensus 231 fL~Sd~s~~iTGq 243 (267)
T Consensus 224 ~~l~~--~~~~Gp 234 (307)
T TIGR01777 224 FALEN--ASVSGP 234 (307)
T ss_pred HHHHC--CCCCCC
T ss_conf 99855--899632