HHsearch alignment for GI: 254780462 and conserved domain: TIGR02197

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase; InterPro: IPR011912 Lipopolysaccharides (LPS) are glycolipids that consitutes the outer monolayer of the outer membranes of most Gram-negative bacteria . They consist of lipid A (endotoxin) which anchors LPS to the outer membrane, a non-repeating core oligosachharide, and an immunogenic O-antigen repeat polymer, which is an oligosaccharide of 1-40 units that variesbetween different strains of bacteria. Although the O-antigen and most of the core domain are not necessary for growth in the lab, they appear to help bacteria resist environmental stresses including the complement system and antibiotics. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of LPS in Gram-negative bacteria . This enzyme is homologous to UDP-glucose 4-epimerase (IPR005886 from INTERPRO) and belongs to the NAD dependent epimerase/dehydratase family. It participates in the biosynthetic pathway leading to incorporation of heptose, a conserved sugar, into the core region of LPS, performing the reaction shown below: ADP-D-glycero-D-manno-heptose = ADP-L-glycero-D-manno-heptose It is a homopentameric enzyme with each monomer composed of two domains: an N-terminal modified Rossman fold domain for NADP binding, and a C-terminal substrate binding domain.; GO: 0008712 ADP-glyceromanno-heptose 6-epimerase activity, 0050661 NADP binding, 0005975 carbohydrate metabolic process.
Probab=97.85  E-value=1.7e-05  Score=53.23  Aligned_cols=210  Identities=15%  Similarity=0.105  Sum_probs=123.6

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCC--CEEEEEECCHH--HH--HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH--
Q ss_conf             999388988525899999999899--88999948978--99--99999985159649998779999999999999999--
Q gi|254780462|r   10 GLIMGVANDHSIAWGIAKVLHSAG--AQLAFSYQGES--IG--KRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKE--   81 (267)
Q Consensus        10 ~lItGas~~~GIG~aia~~l~~~G--a~V~i~~~~~~--~~--~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~--   81 (267)
T Consensus         1 IiVTGGAGF--IGSNlv~~LN~~gP~~dI~vvD~L~~~~~F~ng~~~slg~~kk~~Nl~~~~I~d~i~k~~~~~~l~~~~   78 (353)
T TIGR02197         1 IIVTGGAGF--IGSNLVKALNERGPETDILVVDNLRDDATFENGNPQSLGHFKKFLNLADLEIADYIDKDDLLDRLEKGS   78 (353)
T ss_pred             CEECCCCCH--HHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCHHHHHHHHHCC
T ss_conf             955067636--899999999643895428887407875524677743223424432555411213358854699998302


Q ss_pred             -HHCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECC---------
Q ss_conf             -8379889993683317765557612579999977650166112322210022244684168988752014---------
Q gi|254780462|r   82 -RWETLDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMR---------  151 (267)
Q Consensus        82 -~~g~iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~---------  151 (267)
T Consensus        79 ~~~~~~~avfH~GAcS----------~TTe~D~~~~m~nN~~ys~~Ll~~c~~~---~~~~IYASSAatYG~~~~~f~~~  145 (353)
T TIGR02197        79 EALGKIEAVFHQGACS----------DTTETDGEYMMENNYQYSKRLLDWCAEK---GVPFIYASSAATYGDGEAGFRED  145 (353)
T ss_pred             CCCCCCCEEEECCHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCEEEECCHHHCCCCCCCCCCC
T ss_conf             0138833799733125----------3588627999988999999999999964---89868850312107687777766


Q ss_pred             -CC------CCCCCCHHHHHHHHHHHH-HHHH-HHHH-H--CCE-EEEECCC-CCCCHHHHCCCC---------CHHHHH
Q ss_conf             -56------432100000156776314-7799-8421-0--858-9756228-726855750798---------479999
Q gi|254780462|r  152 -VV------PNYNAMAPAKSALESSTK-YLAC-DYGG-M--NIR-INAISAG-PVRTLAGASISN---------GRDIAA  208 (267)
Q Consensus       152 -~~------~~~~~Y~asKaal~~ltr-~lA~-El~~-~--gIr-VNaIaPG-~i~T~~~~~~~~---------~~~~~~  208 (267)
T Consensus       146 ~~~e~L~kLrPlN~YGySK~lFD~~v~~~~~~~~~~~~q~~GLrYFNVYGP~E~HKG~MASv~f~~~~q~~~~~~v~LF~  225 (353)
T TIGR02197       146 RELEELQKLRPLNVYGYSKFLFDQYVRRRVLPGEALSAQVVGLRYFNVYGPREYHKGKMASVAFHLFNQIKAGGNVKLFK  225 (353)
T ss_pred             CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             56588975187886122167898999998601247986424102113468886754436999999888997378820235


Q ss_pred             HHHHCCC----CCCCCCHHHHHHHHHHHHC
Q ss_conf             9982688----9987669999999998619
Q gi|254780462|r  209 WSKENSP----LKRTVSLEDIGNSALYLLS  234 (267)
Q Consensus       209 ~~~~~~P----l~r~~~~edva~~v~fL~S  234 (267)
T Consensus       226 ~~~~~~~dGeQ~RDFVYV~DV~~~n~~~~~  255 (353)
T TIGR02197       226 SHKEGFKDGEQLRDFVYVKDVVKVNLWLLE  255 (353)
T ss_pred             CCCCCCCCCCCCCCCEEHHHHHHHHHHHHH
T ss_conf             668589887811011552769999999984