HHsearch alignment for GI: 254780462 and conserved domain: TIGR02823
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family; InterPro: IPR014188 This entry represents a subfamily of the alcohol dehydrogenase, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This entry includes YhdH from Escherichia coli and YhfP from Bacillus subtilis both of which bind NADPH or NAD, but not zinc. Both proteins have been studied crystallographically for insight into function. .
Probab=94.55 E-value=0.11 Score=30.09 Aligned_cols=168 Identities=15% Similarity=0.133 Sum_probs=85.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE-ECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 878999388988525899999999899889999-4897899999999851596499987799999999999999998379
Q gi|254780462|r 7 GKRGLIMGVANDHSIAWGIAKVLHSAGAQLAFS-YQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWET 85 (267)
Q Consensus 7 gK~~lItGas~~~GIG~aia~~l~~~Ga~V~i~-~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 85 (267)
T Consensus 149 ~GpVlVTGAtG--GVGS~Av~~L~~lGY~V~A~tGk~~~~~~---yL~~LGA~evi~R~~l~~~a~-------------- 209 (330)
T TIGR02823 149 DGPVLVTGATG--GVGSLAVAILSKLGYEVVASTGKAEEEVE---YLKELGASEVIDREELSEDAP-------------- 209 (330)
T ss_pred CCCEEEECCCC--CHHHHHHHHHHHCCCEEEEEECCHHHHHH---HHHHCCCCCCCCHHHCCCCCC--------------
T ss_conf 88788706778--77899999998379769997378377889---998658110577112276878--------------
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECC----CCCCCCCCHH
Q ss_conf 889993683317765557612579999977650166112322210022244684168988752014----5643210000
Q gi|254780462|r 86 LDFVVHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMR----VVPNYNAMAP 161 (267)
Q Consensus 86 iD~lVnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~----~~~~~~~Y~a 161 (267)
T Consensus 210 ----------------~kPL~k~~WAGAvDt-----VGG~~-La~~l~~~~ygG~VA~cGlagG~~L~tTV~PF------ 261 (330)
T TIGR02823 210 ----------------GKPLEKERWAGAVDT-----VGGKT-LANVLAQLKYGGAVAACGLAGGADLPTTVLPF------ 261 (330)
T ss_pred ----------------CCCCCCCCCCCEEEC-----CCHHH-HHHHHHHHCCCCEEEEEECCCCCCCCCEECCH------
T ss_conf ----------------886312222215746-----87579-99999840689789999426798635012550------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCE---EEEE-CCCCCCCHHHHCCCCC--HHHHHHHHH-CCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 0156776314779984210858---9756-2287268557507984--799999982-6889987669999999998619
Q gi|254780462|r 162 AKSALESSTKYLACDYGGMNIR---INAI-SAGPVRTLAGASISNG--RDIAAWSKE-NSPLKRTVSLEDIGNSALYLLS 234 (267)
Q Consensus 162 sKaal~~ltr~lA~El~~~gIr---VNaI-aPG~i~T~~~~~~~~~--~~~~~~~~~-~~Pl~r~~~~edva~~v~fL~S 234 (267)
T Consensus 262 ----------------ILRGV~LlGIDSV~~p~~~R~~~W~RLA~dl~~~~L~~~~~~ei~L------~elp~~~~~~l- 318 (330)
T TIGR02823 262 ----------------ILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRNLESLTTQEITL------EELPEAAEQIL- 318 (330)
T ss_pred ----------------HHCCCEEEEECHHCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCH------HHHHHHHHHHH-
T ss_conf ----------------4328538885300188789999999887415977888784200157------76899999997-
Q ss_pred HHHCCCCCCEEE
Q ss_conf 887887886899
Q gi|254780462|r 235 YLSNGVTGEIHY 246 (267)
Q Consensus 235 d~s~~iTGq~l~ 246 (267)
T Consensus 319 --~G~~~GRtvV 328 (330)
T TIGR02823 319 --AGQVRGRTVV 328 (330)
T ss_pred --CCCCCCEEEE
T ss_conf --3883005877