HHsearch alignment for GI: 254780462 and conserved domain: cd05213
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.69 E-value=0.02 Score=34.54 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=51.7
Q ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 75688789993889885258999999998998-89999489789999999985159649998779999999999999999
Q gi|254780462|r 3 NILKGKRGLIMGVANDHSIAWGIAKVLHSAGA-QLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKE 81 (267)
Q Consensus 3 ~~L~gK~~lItGas~~~GIG~aia~~l~~~Ga-~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (267)
T Consensus 174 ~~l~~~~vLviGa-Ge--m~~l~~~~L~~~g~~~i~v~nRt~~ra~---~la~~~g~~-~-----~~-------~~~l~~ 234 (311)
T cd05213 174 GNLKGKKVLVIGA-GE--MGELAAKHLAAKGVAEITIANRTYERAE---ELAKELGGN-A-----VP-------LDELLE 234 (311)
T ss_pred CCCCCCEEEEECC-CH--HHHHHHHHHHHCCCCEEEEECCCHHHHH---HHHHHCCCE-E-----EC-------HHHHHH
T ss_conf 8721167999868-79--9999999999659982599768678999---999974989-9-----72-------999999
Q ss_pred HHCCCCEEEECCCC
Q ss_conf 83798899936833
Q gi|254780462|r 82 RWETLDFVVHSIAF 95 (267)
Q Consensus 82 ~~g~iD~lVnnAg~ 95 (267)
T Consensus 235 ~l~~~DvvisaT~s 248 (311)
T cd05213 235 LLNEADVVISATGA 248 (311)
T ss_pred HHHHCCEEEEECCC
T ss_conf 99768999992799