HHsearch alignment for GI: 254780462 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=99.42 E-value=1.3e-11 Score=90.54 Aligned_cols=196 Identities=15% Similarity=0.157 Sum_probs=125.4
Q ss_pred EEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 99938898852589999999989988999948978999999998515964999877999999999999999983798899
Q gi|254780462|r 10 GLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDFV 89 (267)
Q Consensus 10 ~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l 89 (267)
T Consensus 1 ILVtG~~Gf--iGs~l~~~L~~~g~~v~~~~r~--------------------~~D~~d~~~l~~~~~~~-----~pd~V 53 (284)
T pfam04321 1 ILVTGANGQ--LGRELTRLLAERGVEVVALDRP--------------------ELDLTDPEAVAALVREA-----RPDVV 53 (284)
T ss_pred EEEECCCCH--HHHHHHHHHHHCCCEEEEECCC--------------------CCCCCCHHHHHHHHHHC-----CCCEE
T ss_conf 699648998--9999999998689989995486--------------------25788999999999864-----99799
Q ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCC---C--------CCCCC
Q ss_conf 936833177655576125799999776501661123222100222446841689887520145---6--------43210
Q gi|254780462|r 90 VHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMRV---V--------PNYNA 158 (267)
Q Consensus 90 VnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~~---~--------~~~~~ 158 (267)
T Consensus 54 ihlAa~~~~~--------~~~~~~~~~~~~Nv~~t~~l~~~~~~~---~~~~i~~Ss~~Vy~g~~~~p~~E~~~~~P~~~ 122 (284)
T pfam04321 54 VNAAAYTAVD--------KAESEPELAYAVNALGPGNLAEACAAR---GAPLIHISTDYVFDGAKGGPYREDDPTGPLNV 122 (284)
T ss_pred EECCCCCCCH--------HHHHCHHHHHHHHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9724135556--------777488889987599999999998744---98579841753000689988545777789880
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHCCCC-------CCCCCHHHHHHHHHH
Q ss_conf 0000156776314779984210858975622872685575079847999999826889-------987669999999998
Q gi|254780462|r 159 MAPAKSALESSTKYLACDYGGMNIRINAISAGPVRTLAGASISNGRDIAAWSKENSPL-------KRTVSLEDIGNSALY 231 (267)
Q Consensus 159 Y~asKaal~~ltr~lA~El~~~gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~Pl-------~r~~~~edva~~v~f 231 (267)
T Consensus 123 Yg~sK~~~E~~~~~~~~~-------~~IlR~~~vyG~~~~~~--~~~~~~~~~~~~~i~i~~d~~~~~~~v~D~a~~~~~ 193 (284)
T pfam04321 123 YGRTKLAGEQAVLAANPR-------HLILRTAWVYGEYGNNF--VKTMLRLAAERDELRVVDDQLGSPTSARDLADALLA 193 (284)
T ss_pred HHHHHHHHHHHHHHHCCC-------CEEEEEEEECCCCCCCH--HHHHHHHHHCCCCCEEECCCCCCCEEHHHHHHHHHH
T ss_conf 165758999999972534-------60787734428888788--999999986289826853756896989999999999
Q ss_pred HHCH-HH-CCCCCCEEEECCCCCE
Q ss_conf 6198-87-8878868998688443
Q gi|254780462|r 232 LLSY-LS-NGVTGEIHYVDCGYNI 253 (267)
Q Consensus 232 L~Sd-~s-~~iTGq~l~VDGG~s~ 253 (267)
T Consensus 194 ~~e~~~~~~~~~g-iyNi~~~~~~ 216 (284)
T pfam04321 194 LIRKRLRGPALAG-TYHLAGSGET 216 (284)
T ss_pred HHHHCCCCCCCCC-CEEECCCCCE
T ss_conf 9982033777776-1374189844