HHsearch alignment for GI: 254780462 and conserved domain: pfam04321

>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=99.42  E-value=1.3e-11  Score=90.54  Aligned_cols=196  Identities=15%  Similarity=0.157  Sum_probs=125.4

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             99938898852589999999989988999948978999999998515964999877999999999999999983798899
Q gi|254780462|r   10 GLIMGVANDHSIAWGIAKVLHSAGAQLAFSYQGESIGKRLKPLALTVDSDFMIPCNVEDPSSMDLLFERIKERWETLDFV   89 (267)
Q Consensus        10 ~lItGas~~~GIG~aia~~l~~~Ga~V~i~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l   89 (267)
T Consensus         1 ILVtG~~Gf--iGs~l~~~L~~~g~~v~~~~r~--------------------~~D~~d~~~l~~~~~~~-----~pd~V   53 (284)
T pfam04321         1 ILVTGANGQ--LGRELTRLLAERGVEVVALDRP--------------------ELDLTDPEAVAALVREA-----RPDVV   53 (284)
T ss_pred             EEEECCCCH--HHHHHHHHHHHCCCEEEEECCC--------------------CCCCCCHHHHHHHHHHC-----CCCEE
T ss_conf             699648998--9999999998689989995486--------------------25788999999999864-----99799


Q ss_pred             EECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEEEEEECCC---C--------CCCCC
Q ss_conf             936833177655576125799999776501661123222100222446841689887520145---6--------43210
Q gi|254780462|r   90 VHSIAFSDKNELRGPYYNTSRDNFIQTMLVSCFSFTEIVRRAAQLMPHGGAMITLTYGGSMRV---V--------PNYNA  158 (267)
Q Consensus        90 VnnAg~~~~~~~~~~~~~~~~e~~~~~~~vn~~~~~~~~~~~~~~~~~~G~II~isS~~~~~~---~--------~~~~~  158 (267)
T Consensus        54 ihlAa~~~~~--------~~~~~~~~~~~~Nv~~t~~l~~~~~~~---~~~~i~~Ss~~Vy~g~~~~p~~E~~~~~P~~~  122 (284)
T pfam04321        54 VNAAAYTAVD--------KAESEPELAYAVNALGPGNLAEACAAR---GAPLIHISTDYVFDGAKGGPYREDDPTGPLNV  122 (284)
T ss_pred             EECCCCCCCH--------HHHHCHHHHHHHHHHHHHHHHHHHHHC---CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9724135556--------777488889987599999999998744---98579841753000689988545777789880


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHHCCCC-------CCCCCHHHHHHHHHH
Q ss_conf             0000156776314779984210858975622872685575079847999999826889-------987669999999998
Q gi|254780462|r  159 MAPAKSALESSTKYLACDYGGMNIRINAISAGPVRTLAGASISNGRDIAAWSKENSPL-------KRTVSLEDIGNSALY  231 (267)
Q Consensus       159 Y~asKaal~~ltr~lA~El~~~gIrVNaIaPG~i~T~~~~~~~~~~~~~~~~~~~~Pl-------~r~~~~edva~~v~f  231 (267)
T Consensus       123 Yg~sK~~~E~~~~~~~~~-------~~IlR~~~vyG~~~~~~--~~~~~~~~~~~~~i~i~~d~~~~~~~v~D~a~~~~~  193 (284)
T pfam04321       123 YGRTKLAGEQAVLAANPR-------HLILRTAWVYGEYGNNF--VKTMLRLAAERDELRVVDDQLGSPTSARDLADALLA  193 (284)
T ss_pred             HHHHHHHHHHHHHHHCCC-------CEEEEEEEECCCCCCCH--HHHHHHHHHCCCCCEEECCCCCCCEEHHHHHHHHHH
T ss_conf             165758999999972534-------60787734428888788--999999986289826853756896989999999999


Q ss_pred             HHCH-HH-CCCCCCEEEECCCCCE
Q ss_conf             6198-87-8878868998688443
Q gi|254780462|r  232 LLSY-LS-NGVTGEIHYVDCGYNI  253 (267)
Q Consensus       232 L~Sd-~s-~~iTGq~l~VDGG~s~  253 (267)
T Consensus       194 ~~e~~~~~~~~~g-iyNi~~~~~~  216 (284)
T pfam04321       194 LIRKRLRGPALAG-TYHLAGSGET  216 (284)
T ss_pred             HHHHCCCCCCCCC-CEEECCCCCE
T ss_conf             9982033777776-1374189844