Query gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 673
No_of_seqs 421 out of 777
Neff 12.3
Searched_HMMs 33803
Date Wed Jun 1 16:57:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780463.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3l4q_C Phosphatidylinositol 3 19.7 26 0.00077 8.6 15.3 157 98-254 1-168 (170)
2 >2e7s_A RAB guanine nucleotide 19.0 28 0.00082 8.4 10.2 123 232-354 12-134 (135)
3 >2eqb_B RAB guanine nucleotide 18.8 28 0.00083 8.3 12.1 95 235-329 2-96 (97)
4 >1yvl_A Signal transducer and 17.9 30 0.0009 8.1 15.6 175 115-289 7-185 (189)
5 >2zqm_A Prefoldin beta subunit 17.7 31 0.00092 8.0 5.5 106 252-357 6-111 (117)
6 >1x79_B RAB GTPase binding eff 17.0 33 0.00097 7.9 12.8 112 226-337 1-112 (112)
7 >1y1u_A Signal transducer and 16.0 36 0.0011 7.6 14.0 198 206-403 1-202 (204)
8 >2pms_C Pneumococcal surface p 15.5 38 0.0011 7.4 9.3 115 54-168 5-122 (125)
9 >2jee_A YIIU; FTSZ, septum, co 13.1 48 0.0014 6.7 12.6 73 48-120 6-78 (81)
10 >2iak_A Bullous pemphigoid ant 13.0 49 0.0014 6.7 13.6 194 432-625 21-215 (224)
No 1
>>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B (C:)
Probab=19.75 E-value=26 Score=8.56 Aligned_cols=157 Identities=8% Similarity=-0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999999999999999999999988888999
Q gi|254780463|r 98 TKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGI 177 (673)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (673)
+...+......+......+....................+......+......+......+..+................
T Consensus 1 ye~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T 3l4q_C 1 YQQDQIVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLE 80 (170)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90788764656999999999999999999999999999999999999999999999998999889999999998887999
Q ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9-----------99999999999999888875312334899999999864212447999999999999999999998988
Q gi|254780463|r 178 K-----------KSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNG 246 (673)
Q Consensus 178 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (673)
. ...............+...........................+...+..+...+......+......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~ 160 (170)
T 3l4q_C 81 RFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGAR 160 (170)
T ss_dssp SSSSCCCSSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998625579999999999998999999999999998999999999999999999999999999999999999873657
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780463|r 247 FAASGIDE 254 (673)
Q Consensus 247 ~~~~~~~~ 254 (673)
+..+...+
T Consensus 161 ~~~l~~qL 168 (170)
T 3l4q_C 161 QKKINEWL 168 (170)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999876
No 2
>>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} (A:)
Probab=18.97 E-value=28 Score=8.37 Aligned_cols=123 Identities=7% Similarity=-0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999898899999999999999999999999999999999999998786556799999999988677678643
Q gi|254780463|r 232 QMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFV 311 (673)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (673)
.+......+....................+......+......+......+......+......+...............
T Consensus 12 ~~~~~~~~l~~~~~~~~~~~~el~~~~~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (135)
T 2e7s_A 12 KSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLV 91 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999998799999988888999999999988999999999999998887899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2114679999852100257887657878863323344588888
Q gi|254780463|r 312 EKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLG 354 (673)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (673)
..+......+...+..+...+.........+......+...+.
T Consensus 92 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~le 134 (135)
T 2e7s_A 92 ADARXEKYAIEILNKRLTEQLREKDXLLDTLTLQLKNLKKVMH 134 (135)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999999999999999999997752
No 3
>>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} (B:)
Probab=18.78 E-value=28 Score=8.32 Aligned_cols=95 Identities=3% Similarity=-0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999898899999999999999999999999999999999999998786556799999999988677678643211
Q gi|254780463|r 235 VMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKF 314 (673)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (673)
.+...+..+...+......+......+.............+......+......+......+.................+
T Consensus 2 el~~~~~~l~~~~~~~~~~l~~~~~el~~~~~~~~~~~~e~~~~~~~~~~~~~ele~~~~~l~~~~~~~~~~~~~~~~~l 81 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAI 81 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 73416999999999999999877999999999999999989999999999999999988999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 467999985210025
Q gi|254780463|r 315 EKHLESIGAQVQDIH 329 (673)
Q Consensus 315 ~~~~~~l~~~~~~~~ 329 (673)
......+...+..+.
T Consensus 82 ~~~~~~l~~~l~~l~ 96 (97)
T 2eqb_B 82 EILNKRLTEQLREKD 96 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999986535
No 4
>>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens} (A:128-316)
Probab=17.94 E-value=30 Score=8.11 Aligned_cols=175 Identities=6% Similarity=-0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999999999999998888899999999999999999988
Q gi|254780463|r 115 QQHIESKTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENI 194 (673)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (673)
........+......+......+......+....+.+......+............................+......+
T Consensus 7 ~~~~~~~e~~q~~~~l~~~~~~~~~~~~~Lq~~q~el~~~~~~lq~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~el 86 (189)
T 1yvl_A 7 VMLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNREHETNGVAKSDQKQEQLLLKKMYLMLDNKRKEV 86 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC------CHHHHGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999988666578899998755557999999999999999999888988777789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88753123348999999998642124479999999----99999999999998988999999999999999999999999
Q gi|254780463|r 195 AKECSLQSVENNWKGALQHFKKLDFKNLHEKINTL----SCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLL 270 (673)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (673)
................................... ...+..+......+...+......+..+......+......
T Consensus 87 ~~~~~~~~~~le~~~~~l~~~el~~~k~~qq~~~~~~~~~~~l~qLQ~~~~~l~~~~~ql~~qi~~l~~~~~~l~~~~~~ 166 (189)
T 1yvl_A 87 VHKIIELLNVTELTQNALINDELVEWKRRQQSACIGGPPNACLDQLQNWFTIVAESLQQVRQQLKKLEELEQKYTYEHDP 166 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTCSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998889999999999998899999899999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999878655
Q gi|254780463|r 271 KLLNEKISTKGVLSFDTKL 289 (673)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~ 289 (673)
....+..+...+..+...+
T Consensus 167 ~~~~l~~l~~~~~~L~~~L 185 (189)
T 1yvl_A 167 ITKNKQVLWDRTFSLFQQL 185 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999988
No 5
>>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A (A:)
Probab=17.65 E-value=31 Score=8.03 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999878655679999999998867767864321146799998521002578
Q gi|254780463|r 252 IDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSD 331 (673)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (673)
..+..+...+..+.................+......+...............................+...+..+...
T Consensus 6 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~l~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 85 (117)
T 2zqm_A 6 PQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVR 85 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999847412689999718998650999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 87657878863323344588888768
Q gi|254780463|r 332 VREQQKPAKPRLDLIEKIGERLGNLE 357 (673)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (673)
+................+...+..+.
T Consensus 86 ~~~l~~~~~~~~~~~~~~~~~~~~l~ 111 (117)
T 2zqm_A 86 LNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999987
No 6
>>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} (B:)
Probab=16.99 E-value=33 Score=7.85 Aligned_cols=112 Identities=7% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999898899999999999999999999999999999999999998786556799999999988677
Q gi|254780463|r 226 INTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQS 305 (673)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (673)
+..+...+..+...+......+.............+.............+......+......+................
T Consensus 1 L~~l~~~~~~l~~e~~~~~~~l~~~~~e~~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 80 (112)
T 1x79_B 1 MAETRDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMA 80 (112)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90579999999999999999999999999999999999898899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 67864321146799998521002578876578
Q gi|254780463|r 306 YTQKFVEKFEKHLESIGAQVQDIHSDVREQQK 337 (673)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 337 (673)
........+......+......+.........
T Consensus 81 el~~~~~~l~~~~~~l~~~~~~l~~~~~~l~s 112 (112)
T 1x79_B 81 VLMQSREQVSEELVRLQKDNDSLQGKHSLHVS 112 (112)
T ss_dssp HHHHHHHHHHTC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999999998867509
No 7
>>1y1u_A Signal transducer and activator of transcription 5A; STAT, DNA-binding, SH2 domain, transcription regulation, signaling protein; 3.21A {Mus musculus} (A:1-204)
Probab=16.05 E-value=36 Score=7.59 Aligned_cols=198 Identities=12% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q ss_conf 99999999864212447999999999999999999998988999999999999999999999999----99999999999
Q gi|254780463|r 206 NWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLL----KLLNEKISTKG 281 (673)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 281 (673)
................+...+..+...+..+...+..+......+......+......+...... .......+...
T Consensus 1 sp~~~~~~~~~~~~~~l~~~~~~l~~~~~~le~~~~~l~~~~~~l~~~~~el~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 80 (204)
T 1y1u_A 1 SPAGVLVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQESLRIQAQFAQLGQLNPQERMSRETALQQK 80 (204)
T ss_dssp ----------CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTTSCCSSTTTHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96056999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99878655679999999998867767864321146799998521002578876578788633233445888887687799
Q gi|254780463|r 282 VLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVA 361 (673)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (673)
.......+......+........................+...........................+......+.....
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 160 (204)
T 1y1u_A 81 QVSLETWLQREAQTLQQYRVELAEKHQKTLQLLRKQQTIILDDELIQWKRRQQLAGNGGPPEGSLDVLQSWCEKLAEIIW 160 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999999889999899999998876789999999999999999998
Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 988888864210006887310046788779999987877899
Q gi|254780463|r 362 NIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRT 403 (673)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (673)
.+..............................+.........
T Consensus 161 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~q~l~~Lls 202 (204)
T 1y1u_A 161 QNRQQIRRAEHLCQQLPIPGPVEEMLAEVNATITDIISALVT 202 (204)
T ss_dssp HHHHHHHHHHHHHTTSCCCSTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999887777788899999999999999988
No 8
>>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein- protein complex, metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} (C:)
Probab=15.46 E-value=38 Score=7.42 Aligned_cols=115 Identities=4% Similarity=-0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999---999999999999999999999999999999999999999999999999
Q gi|254780463|r 54 KEKIKILWSSLRKIAGSNEEVSDPNLNSP---IQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDP 130 (673)
Q Consensus 54 ~e~~~~l~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (673)
...+..+...+..+......+........ ............+......+......+......+.............+
T Consensus 5 ~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (125)
T 2pms_C 5 DAEEVAPQAKIAELENQVHRLEQELKEIDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQL 84 (125)
T ss_dssp HHHHHSHHHHHHHHHHHHHHHHHHTTTTCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78888999999999999999999999899999999999879999999999888899999999989999999999889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999
Q gi|254780463|r 131 NLQSESLPTIPGTAIREDDDIDIFHSDMAKLSKSITEL 168 (673)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (673)
......+......+......+......+..+...+..+
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~el~~l 122 (125)
T 2pms_C 85 KAAEENNNVEDYFKEGLEKTIAAKKAELEKTEADLKKA 122 (125)
T ss_dssp HCCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999989999999999999999975
No 9
>>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli} (A:)
Probab=13.06 E-value=48 Score=6.67 Aligned_cols=73 Identities=5% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999999999999999999999999999999999999999999999999999999999999
Q gi|254780463|r 48 PLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIES 120 (673)
Q Consensus 48 ~l~~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (673)
.+..........+......+......+...+..+......+......+......+......+......+....
T Consensus 6 ~~~~~l~~~~~el~~~~~eL~~~~eeL~~~neeL~~~~eeL~~~~~eL~~~neeL~~~~~eLe~~~~~L~~~~ 78 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999875778999999997589999999999999999999999987003
No 10
>>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle, spectrin repeat, cell adhesion; 3.00A {Mus musculus} (A:)
Probab=13.02 E-value=49 Score=6.66 Aligned_cols=194 Identities=7% Similarity=-0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 876448889999987554689999998521122489999999999999987126689999999999-9999999999999
Q gi|254780463|r 432 SINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSND-LSPNHQASHKYSE 510 (673)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 510 (673)
.+.........+...+......+.....................+...+......+.......... ..........+..
T Consensus 21 ~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (224)
T 2iak_A 21 EEEVNMKFVQDLLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEEFESSLKEAKISEIQMTAPLKLSYTDKLHR 100 (224)
T ss_dssp HHHHHC-CHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHGGGCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 98999999999999999999985088879999999999999999999999879999999999988610468999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q gi|254780463|r 511 LFKNLCSDNTPSVNQTRVESNTYNEQYPILSSNNSLDQHNHPHDISETQGDSVYDQKKREKEFNSPHDIQHMLERVSLIQ 590 (673)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (673)
+..................................+................................+......+....
T Consensus 101 l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el~~~~~~~~~~~ 180 (224)
T 2iak_A 101 LESQYAKLLNTSRNQERHLDTLHNFVTRATNELIWLNEKEESEVAYDWSERNSSVARKKSYHAELMRELEQKEESIKAVQ 180 (224)
T ss_dssp HHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------CSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99889999999999999999999998889999998899999974235799899999999999999988887389999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999899899999999999999999999999986
Q gi|254780463|r 591 QGILEDDNTIPTYISAVRRATSTSTMRSNDLKEKN 625 (673)
Q Consensus 591 ~~l~~~~~~l~~~i~~l~~~~~~~~~~~~~l~e~~ 625 (673)
................+...+.........+....
T Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 215 (224)
T 2iak_A 181 EIAEQLLLENHPARLTIEAYRAAMQTQWSWILQLC 215 (224)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999987299967999999999999999999999
Done!