Query         gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 673
No_of_seqs    421 out of 777
Neff          12.3
Searched_HMMs 13730
Date          Wed Jun  1 08:34:23 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780463.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1rfya_ a.2.13.1 (A:) Transcri   4.3      84  0.0061    2.3   3.5   20  629-648    60-79  (89)
  2 d1jkea_ c.110.1.1 (A:) D-Tyr t   4.3      85  0.0062    2.2   0.1   10  652-661    74-83  (145)
  3 d1b0na1 a.34.1.1 (A:74-108) Si   4.1      90  0.0065    2.1   0.2    5    2-6      15-19  (35)
  4 d1skye1 a.69.1.1 (E:357-470) F   4.0      92  0.0067    2.0   1.4   21    3-23     32-52  (114)
  5 d1jo5a_ f.3.1.1 (A:) Light-har   4.0      93  0.0068    1.9   0.4    6    1-6       8-13  (48)
  6 d1tc5a_ c.110.1.1 (A:) probabl   4.0      94  0.0068    1.9   0.1   10  652-661    88-97  (187)
  7 d1gq2a2 c.58.1.3 (A:23-279) Mi   3.9      88  0.0064    2.1  -0.2    7  666-672    70-76  (257)
  8 d1v6za1 b.122.1.2 (A:4-66) Hyp   3.8      99  0.0072    1.8   0.3    9    1-9       8-16  (63)
  9 d1j7ga_ c.110.1.1 (A:) D-Tyr t   3.8      99  0.0072    1.7   0.1   10  652-661    74-83  (144)
 10 d2jdid1 a.69.1.1 (D:358-475) F   3.8   1E+02  0.0073    1.7   2.1   21    3-23     35-55  (118)

No 1  
>d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]}
Probab=4.34  E-value=84  Score=2.25  Aligned_cols=20  Identities=10%  Similarity=0.077  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             06778999999999999999
Q gi|254780463|r  629 KIWNFTKYITSNQWVTSIML  648 (673)
Q Consensus       629 ~~~~~~~~~~~~~~~~~~~~  648 (673)
                      .+.|..+.+.+..+|+.+..
T Consensus        60 hl~YieA~IEMHAQMSAv~t   79 (89)
T d1rfya_          60 HIRYIEASIEMHAQMSALNT   79 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999


No 2  
>d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]}
Probab=4.29  E-value=85  Score=2.21  Aligned_cols=10  Identities=50%  Similarity=0.756  Sum_probs=0.0

Q ss_pred             HCCCCHHHHH
Q ss_conf             2135044347
Q gi|254780463|r  652 LLVSSFLLSP  661 (673)
Q Consensus       652 ~~~~~~~~~~  661 (673)
                      ++|+.|++.+
T Consensus        74 LiVSQFTL~a   83 (145)
T d1jkea_          74 LVVSQFTLAA   83 (145)
T ss_dssp             EEEECGGGGS
T ss_pred             EEEEEEEEEE
T ss_conf             9964124555


No 3  
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=4.12  E-value=90  Score=2.05  Aligned_cols=5  Identities=40%  Similarity=0.767  Sum_probs=0.0

Q ss_pred             CCCHH
Q ss_conf             87056
Q gi|254780463|r    2 SGLTP    6 (673)
Q Consensus         2 ~~~~~    6 (673)
                      ||+++
T Consensus        15 SGvSK   19 (35)
T d1b0na1          15 SGVSK   19 (35)
T ss_dssp             SCCCH
T ss_pred             CCCCH
T ss_conf             46779


No 4  
>d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=4.02  E-value=92  Score=1.96  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             705689999999999999999
Q gi|254780463|r    3 GLTPLKDHSSCAVSKKSELEN   23 (673)
Q Consensus         3 ~~~~L~~~~~~~~~k~~ele~   23 (673)
                      |+.+|.+.-+..+.|-..+++
T Consensus        32 G~dELSeeDk~~V~RARklqr   52 (114)
T d1skye1          32 GMDELSDEDKLVVHRARRIQF   52 (114)
T ss_dssp             CSTTCTTHHHHHHHHHHHHHH
T ss_pred             CCHHCCHHHHHHHHHHHHHHH
T ss_conf             703139999899999999999


No 5  
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.99  E-value=93  Score=1.94  Aligned_cols=6  Identities=50%  Similarity=0.761  Sum_probs=0.0

Q ss_pred             CCCCHH
Q ss_conf             987056
Q gi|254780463|r    1 MSGLTP    6 (673)
Q Consensus         1 ~~~~~~    6 (673)
                      ||||+.
T Consensus         8 ~tGLT~   13 (48)
T d1jo5a_           8 YTGLTD   13 (48)
T ss_dssp             TGGGHH
T ss_pred             CCCCCH
T ss_conf             777989


No 6  
>d1tc5a_ c.110.1.1 (A:) probable eukaryotic D-amino acid tRNA deacylase {Leishmania major [TaxId: 5664]}
Probab=3.97  E-value=94  Score=1.91  Aligned_cols=10  Identities=30%  Similarity=0.308  Sum_probs=0.0

Q ss_pred             HCCCCHHHHH
Q ss_conf             2135044347
Q gi|254780463|r  652 LLVSSFLLSP  661 (673)
Q Consensus       652 ~~~~~~~~~~  661 (673)
                      ++|+.|++.+
T Consensus        88 LvVSQFTL~a   97 (187)
T d1tc5a_          88 LIVPQASLGG   97 (187)
T ss_dssp             EEEECGGGGC
T ss_pred             EEEEEEEEEE
T ss_conf             9987378873


No 7  
>d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}
Probab=3.86  E-value=88  Score=2.11  Aligned_cols=7  Identities=43%  Similarity=1.013  Sum_probs=0.0

Q ss_pred             HHHHHCC
Q ss_conf             6534105
Q gi|254780463|r  666 RETFFFK  672 (673)
Q Consensus       666 ~~~~~~~  672 (673)
                      +|||||+
T Consensus        70 Ne~LFY~   76 (257)
T d1gq2a2          70 NEKLFYK   76 (257)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
T ss_conf             8289999


No 8  
>d1v6za1 b.122.1.2 (A:4-66) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]}
Probab=3.80  E-value=99  Score=1.75  Aligned_cols=9  Identities=33%  Similarity=1.051  Sum_probs=0.0

Q ss_pred             CCCCHHHHH
Q ss_conf             987056899
Q gi|254780463|r    1 MSGLTPLKD    9 (673)
Q Consensus         1 ~~~~~~L~~    9 (673)
                      |+|+.+|++
T Consensus         8 ltgvlpl~e   16 (63)
T d1v6za1           8 LTGVLPLRE   16 (63)
T ss_dssp             GCSBCCHHH
T ss_pred             CCEEEECHH
T ss_conf             534425121


No 9  
>d1j7ga_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Haemophilus influenzae [TaxId: 727]}
Probab=3.79  E-value=99  Score=1.74  Aligned_cols=10  Identities=50%  Similarity=0.790  Sum_probs=0.0

Q ss_pred             HCCCCHHHHH
Q ss_conf             2135044347
Q gi|254780463|r  652 LLVSSFLLSP  661 (673)
Q Consensus       652 ~~~~~~~~~~  661 (673)
                      ++|+.|++.+
T Consensus        74 LvVSQFTL~a   83 (144)
T d1j7ga_          74 LIVSQFTLAA   83 (144)
T ss_dssp             EEEECGGGGC
T ss_pred             EEEEEEEEEE
T ss_conf             9963025665


No 10 
>d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.77  E-value=1e+02  Score=1.72  Aligned_cols=21  Identities=19%  Similarity=0.469  Sum_probs=0.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH
Q ss_conf             705689999999999999999
Q gi|254780463|r    3 GLTPLKDHSSCAVSKKSELEN   23 (673)
Q Consensus         3 ~~~~L~~~~~~~~~k~~ele~   23 (673)
                      |+.+|.+.-+..++|-..+++
T Consensus        35 G~dELSeeDk~~V~RARklqr   55 (118)
T d2jdid1          35 GMDELSEEDKLTVSRARKIQR   55 (118)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHHHHHH
T ss_conf             735209988689999999999


Done!