Query gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 673 No_of_seqs 421 out of 777 Neff 12.3 Searched_HMMs 13730 Date Wed Jun 1 08:34:23 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780463.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1rfya_ a.2.13.1 (A:) Transcri 4.3 84 0.0061 2.3 3.5 20 629-648 60-79 (89) 2 d1jkea_ c.110.1.1 (A:) D-Tyr t 4.3 85 0.0062 2.2 0.1 10 652-661 74-83 (145) 3 d1b0na1 a.34.1.1 (A:74-108) Si 4.1 90 0.0065 2.1 0.2 5 2-6 15-19 (35) 4 d1skye1 a.69.1.1 (E:357-470) F 4.0 92 0.0067 2.0 1.4 21 3-23 32-52 (114) 5 d1jo5a_ f.3.1.1 (A:) Light-har 4.0 93 0.0068 1.9 0.4 6 1-6 8-13 (48) 6 d1tc5a_ c.110.1.1 (A:) probabl 4.0 94 0.0068 1.9 0.1 10 652-661 88-97 (187) 7 d1gq2a2 c.58.1.3 (A:23-279) Mi 3.9 88 0.0064 2.1 -0.2 7 666-672 70-76 (257) 8 d1v6za1 b.122.1.2 (A:4-66) Hyp 3.8 99 0.0072 1.8 0.3 9 1-9 8-16 (63) 9 d1j7ga_ c.110.1.1 (A:) D-Tyr t 3.8 99 0.0072 1.7 0.1 10 652-661 74-83 (144) 10 d2jdid1 a.69.1.1 (D:358-475) F 3.8 1E+02 0.0073 1.7 2.1 21 3-23 35-55 (118) No 1 >d1rfya_ a.2.13.1 (A:) Transcriptional repressor TraM {Agrobacterium tumefaciens [TaxId: 358]} Probab=4.34 E-value=84 Score=2.25 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=10.4 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 06778999999999999999 Q gi|254780463|r 629 KIWNFTKYITSNQWVTSIML 648 (673) Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~ 648 (673) .+.|..+.+.+..+|+.+.. T Consensus 60 hl~YieA~IEMHAQMSAv~t 79 (89) T d1rfya_ 60 HIRYIEASIEMHAQMSALNT 79 (89) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999999 No 2 >d1jkea_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Escherichia coli [TaxId: 562]} Probab=4.29 E-value=85 Score=2.21 Aligned_cols=10 Identities=50% Similarity=0.756 Sum_probs=0.0 Q ss_pred HCCCCHHHHH Q ss_conf 2135044347 Q gi|254780463|r 652 LLVSSFLLSP 661 (673) Q Consensus 652 ~~~~~~~~~~ 661 (673) ++|+.|++.+ T Consensus 74 LiVSQFTL~a 83 (145) T d1jkea_ 74 LVVSQFTLAA 83 (145) T ss_dssp EEEECGGGGS T ss_pred EEEEEEEEEE T ss_conf 9964124555 No 3 >d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]} Probab=4.12 E-value=90 Score=2.05 Aligned_cols=5 Identities=40% Similarity=0.767 Sum_probs=0.0 Q ss_pred CCCHH Q ss_conf 87056 Q gi|254780463|r 2 SGLTP 6 (673) Q Consensus 2 ~~~~~ 6 (673) ||+++ T Consensus 15 SGvSK 19 (35) T d1b0na1 15 SGVSK 19 (35) T ss_dssp SCCCH T ss_pred CCCCH T ss_conf 46779 No 4 >d1skye1 a.69.1.1 (E:357-470) F1 ATP synthase beta subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]} Probab=4.02 E-value=92 Score=1.96 Aligned_cols=21 Identities=19% Similarity=0.389 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 705689999999999999999 Q gi|254780463|r 3 GLTPLKDHSSCAVSKKSELEN 23 (673) Q Consensus 3 ~~~~L~~~~~~~~~k~~ele~ 23 (673) |+.+|.+.-+..+.|-..+++ T Consensus 32 G~dELSeeDk~~V~RARklqr 52 (114) T d1skye1 32 GMDELSDEDKLVVHRARRIQF 52 (114) T ss_dssp CSTTCTTHHHHHHHHHHHHHH T ss_pred CCHHCCHHHHHHHHHHHHHHH T ss_conf 703139999899999999999 No 5 >d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]} Probab=3.99 E-value=93 Score=1.94 Aligned_cols=6 Identities=50% Similarity=0.761 Sum_probs=0.0 Q ss_pred CCCCHH Q ss_conf 987056 Q gi|254780463|r 1 MSGLTP 6 (673) Q Consensus 1 ~~~~~~ 6 (673) ||||+. T Consensus 8 ~tGLT~ 13 (48) T d1jo5a_ 8 YTGLTD 13 (48) T ss_dssp TGGGHH T ss_pred CCCCCH T ss_conf 777989 No 6 >d1tc5a_ c.110.1.1 (A:) probable eukaryotic D-amino acid tRNA deacylase {Leishmania major [TaxId: 5664]} Probab=3.97 E-value=94 Score=1.91 Aligned_cols=10 Identities=30% Similarity=0.308 Sum_probs=0.0 Q ss_pred HCCCCHHHHH Q ss_conf 2135044347 Q gi|254780463|r 652 LLVSSFLLSP 661 (673) Q Consensus 652 ~~~~~~~~~~ 661 (673) ++|+.|++.+ T Consensus 88 LvVSQFTL~a 97 (187) T d1tc5a_ 88 LIVPQASLGG 97 (187) T ss_dssp EEEECGGGGC T ss_pred EEEEEEEEEE T ss_conf 9987378873 No 7 >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Probab=3.86 E-value=88 Score=2.11 Aligned_cols=7 Identities=43% Similarity=1.013 Sum_probs=0.0 Q ss_pred HHHHHCC Q ss_conf 6534105 Q gi|254780463|r 666 RETFFFK 672 (673) Q Consensus 666 ~~~~~~~ 672 (673) +|||||+ T Consensus 70 Ne~LFY~ 76 (257) T d1gq2a2 70 NEKLFYK 76 (257) T ss_dssp CHHHHHH T ss_pred CHHHHHH T ss_conf 8289999 No 8 >d1v6za1 b.122.1.2 (A:4-66) Hypothetical protein TTHA0657 (TT1575) {Thermus thermophilus [TaxId: 274]} Probab=3.80 E-value=99 Score=1.75 Aligned_cols=9 Identities=33% Similarity=1.051 Sum_probs=0.0 Q ss_pred CCCCHHHHH Q ss_conf 987056899 Q gi|254780463|r 1 MSGLTPLKD 9 (673) Q Consensus 1 ~~~~~~L~~ 9 (673) |+|+.+|++ T Consensus 8 ltgvlpl~e 16 (63) T d1v6za1 8 LTGVLPLRE 16 (63) T ss_dssp GCSBCCHHH T ss_pred CCEEEECHH T ss_conf 534425121 No 9 >d1j7ga_ c.110.1.1 (A:) D-Tyr tRNAtyr deacylase, DTD {Haemophilus influenzae [TaxId: 727]} Probab=3.79 E-value=99 Score=1.74 Aligned_cols=10 Identities=50% Similarity=0.790 Sum_probs=0.0 Q ss_pred HCCCCHHHHH Q ss_conf 2135044347 Q gi|254780463|r 652 LLVSSFLLSP 661 (673) Q Consensus 652 ~~~~~~~~~~ 661 (673) ++|+.|++.+ T Consensus 74 LvVSQFTL~a 83 (144) T d1j7ga_ 74 LIVSQFTLAA 83 (144) T ss_dssp EEEECGGGGC T ss_pred EEEEEEEEEE T ss_conf 9963025665 No 10 >d2jdid1 a.69.1.1 (D:358-475) F1 ATP synthase beta subunit, domain 3 {Rat (Rattus norvegicus) [TaxId: 10116]} Probab=3.77 E-value=1e+02 Score=1.72 Aligned_cols=21 Identities=19% Similarity=0.469 Sum_probs=0.0 Q ss_pred CCHHHHHHHHHHHHHHHHHHH Q ss_conf 705689999999999999999 Q gi|254780463|r 3 GLTPLKDHSSCAVSKKSELEN 23 (673) Q Consensus 3 ~~~~L~~~~~~~~~k~~ele~ 23 (673) |+.+|.+.-+..++|-..+++ T Consensus 35 G~dELSeeDk~~V~RARklqr 55 (118) T d2jdid1 35 GMDELSEEDKLTVSRARKIQR 55 (118) T ss_dssp CGGGSCHHHHHHHHHHHHHHH T ss_pred CHHHCCHHHHHHHHHHHHHHH T ss_conf 735209988689999999999 Done!