RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(673 letters)
>gnl|CDD|34155 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 37.5 bits (87), Expect = 0.011
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 13/183 (7%)
Query: 219 FKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGID------EKLVSIVNSTHNLLSLLKL 272
+ L E++ S + ++ + G I+ E+ V N L +L
Sbjct: 257 LERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPILPD 316
Query: 273 LNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDV 332
EK + L E V+++ + A++ V KFEK L+ + + + +I ++
Sbjct: 317 YLEKAKEN-----NEHLKEEIERVKESYRLAETELG-SVRKFEKELKELESVLDEILENI 370
Query: 333 REQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEE-RQNTSEDPAILRNLENQLLNIK 391
Q+ D +E+I + L ++E + L R++ E L L+++L IK
Sbjct: 371 EAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIK 430
Query: 392 DLV 394
+
Sbjct: 431 RYM 433
>gnl|CDD|31474 COG1283, NptA, Na+/phosphate symporter [Inorganic ion transport and
metabolism].
Length = 533
Score = 33.6 bits (77), Expect = 0.17
Identities = 44/190 (23%), Positives = 69/190 (36%), Gaps = 40/190 (21%)
Query: 305 SYTQKFVEKFEKHLESIGAQVQDI---HSDVREQQKPAK------PRLDLIEKIGERLG- 354
++ +E+ +++E +V++I V + K + L E+ R
Sbjct: 345 DSIEQMLERLYEYIEGDAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAE 404
Query: 355 ------NLESHVANIMLKLEERQNT--------SED------PAILRNLENQLLNIKDLV 394
NLE H+ +I+ +L E + SED LEN L I LV
Sbjct: 405 IIDAAINLE-HIGDIIERLLELADKKIANGRAFSEDGLEELDALFALTLENLRLAISVLV 463
Query: 395 TNDLKDNRTLREPDQHVFGLEDYIVKTAHKTARSMLNSINKS---QDIERILQK------ 445
T DL+ R L E + V LE K R S+ S DI R L++
Sbjct: 464 TGDLELARRLVERKKRVRRLERRSSKRHLDRLRDGAASVETSSLHLDILRDLKRINSHIA 523
Query: 446 NMHEYCKEIQ 455
++ E
Sbjct: 524 SVAYPVLEES 533
>gnl|CDD|147678 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 peptidases
are well-studied proteases found in a wide range of
organisms including mammals and bacteria. In mammals
they participate in processes such as cardiovascular
development, blood-pressure regulation, nervous control
of respiration, and regulation of the function of
neuropeptides in the central nervous system. In bacteria
they may be used for digestion of milk.
Length = 379
Score = 31.9 bits (73), Expect = 0.57
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 265 NLLSLLKLLNEKIST--KGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEK 316
LL L L ++ + V++F+TKL++ + E+ R YA+ Y + + +
Sbjct: 163 KLLKLAGLDEDEAEKAAEDVVAFETKLAKASWSREELRDYAKLYNPMTLAELQA 216
>gnl|CDD|37429 KOG2218, KOG2218, KOG2218, ER to golgi transport
protein/RAD50-interacting protein 1 [Intracellular
trafficking, secretion, and vesicular transport, Cell
cycle control, cell division, chromosome partitioning].
Length = 737
Score = 31.5 bits (71), Expect = 0.82
Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 3/141 (2%)
Query: 403 TLREPDQHVFGLEDYIVKTAHKTARS-MLNSINKSQDIERILQKNMHEYCKEIQKVHAEQ 461
TL E D +F LE+ I +A K S + + +IE IL +H +++ + +
Sbjct: 126 TLLELDTLLFSLENSIFLSASKALFSTSFSLFEEINNIEEILVARLHLIWRKLFRSFDRR 185
Query: 462 TIKNFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSNDLSPN--HQASHKYSELFKNLCSDN 519
T+K L F+ + + S S L + + F L +
Sbjct: 186 TVKWHKLLRKQKSSDFEAILSSLRWPLATLMSESVGLKSPLREMLKSLFCQSFLFLSEET 245
Query: 520 TPSVNQTRVESNTYNEQYPIL 540
++ ++ + + +
Sbjct: 246 LQGESRRPLQYFKESVEPVLW 266
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I, Apolipoprotein A-IV, and
Apolipoprotein E.
Length = 191
Score = 31.4 bits (72), Expect = 0.88
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 283 LSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPR 342
L E+ + E+ ++ Y Q+F + K E++ ++Q +VR + +P
Sbjct: 1 TLLSDSLDELNSYAEELQEQLGPYAQEFWAQLSKETEALREELQKDLEEVRARLQPY--L 58
Query: 343 LDLIEKIGERLGNLESHVANIMLKLEERQNT 373
+L K+G+ L L +A +L ER N
Sbjct: 59 DELKAKVGQNLEELRQRLAPYAEELRERLNR 89
>gnl|CDD|147584 pfam05478, Prominin, Prominin. The prominins are an emerging
family of proteins that among the multispan membrane
proteins display a novel topology. Mouse prominin and
human prominin (mouse)-like 1 (PROML1) are predicted to
contain five membrane spanning domains, with an
N-terminal domain exposed to the extracellular space
followed by four, alternating small cytoplasmic and
large extracellular, loops and a cytoplasmic C-terminal
domain. The exact function of prominin is unknown
although in humans defects in PROM1, the gene coding for
prominin, cause retinal degeneration.
Length = 809
Score = 30.8 bits (70), Expect = 1.5
Identities = 23/124 (18%), Positives = 50/124 (40%), Gaps = 16/124 (12%)
Query: 366 KLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDY--IVKTAH 423
+L+ N + + L+N+ L+++ + N + +L LE VKT
Sbjct: 631 ELDALANNLPNGKLKVALKNEALDLRSIQQNFVPPMESL---------LEKLNSNVKTLD 681
Query: 424 KTARSMLNSI----NKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDM-LVKIFQ 478
+++ + N++ + Q + L N E E K ++ + D + +I +
Sbjct: 682 ESSNDLQNAVKDVLAEVQAAQGFLNNNASEIVNEESKKFLDRILGYIDQYIDWVIEEITE 741
Query: 479 KLGT 482
K+G
Sbjct: 742 KVGR 745
>gnl|CDD|37671 KOG2460, KOG2460, KOG2460, Signal recognition particle, subunit
Srp68 [Intracellular trafficking, secretion, and
vesicular transport].
Length = 593
Score = 30.4 bits (68), Expect = 1.6
Identities = 67/420 (15%), Positives = 127/420 (30%), Gaps = 79/420 (18%)
Query: 206 NWKGALQHFK--KLDFKNLHEKINTL-----------SCQMNVMQCTFDKNNNGFAASGI 252
WK A + F KL ++ L N Q N+ C ++ + I
Sbjct: 167 KWKDAAEAFNNAKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPE-SNGFI 225
Query: 253 DEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVE 312
DE + S L+ LL+ ++ IS + T T + + E
Sbjct: 226 DELMQSREQKDEELVKLLESVDFLISIQ------TSTESSATTTTIEWRGRKVKVI--DE 277
Query: 313 KFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGN-LESHVANIMLKLEERQ 371
K + L DI + + +L L+EK R + +++ I + ++R
Sbjct: 278 KVRQFLLQG----LDIEPALAQITTY-DQKLSLLEKALARCEDAIQNVRDEIKIDEKQRN 332
Query: 372 NTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHKTARSMLN 431
+T IL L+ L D N + + ++
Sbjct: 333 STLNGQIILAYLKYNKLLTTISRNEDAFTN-----------------LWNQWLSQQTSDP 375
Query: 432 SINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKLGTLTEEGRRLP 491
+ QD+ER L ++ + EI ++ ++ K + ++ F+
Sbjct: 376 KKLRPQDLER-LYDSIIKNLSEIMELPGLESDKELQSQLELKKLYFKAFRCFY------- 427
Query: 492 YSTSNDLSPNHQASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYPILSSNNSLDQHNH 551
++ ++QA KYSE L + + E ++ E L
Sbjct: 428 ------IAVSYQAKKKYSEALA-LYVRAYSYLQEVNSELESFKESLLPLLLLEL------ 474
Query: 552 PHDISETQGDSVYDQKKR----------EKEFNSPHDIQHMLERVSLIQQGILEDDNTIP 601
ISE Q + D ++E + + + D
Sbjct: 475 ---ISELQKRKESLGAAVILLAEYAKRTNTGGSQGKDNLPLVETLDSYKLDLSLDTKLPN 531
>gnl|CDD|33075 COG3264, COG3264, Small-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 835
Score = 29.9 bits (67), Expect = 2.4
Identities = 29/189 (15%), Positives = 60/189 (31%), Gaps = 43/189 (22%)
Query: 264 HNLLSLLKLLNEK-------------ISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKF 310
L L + +N K + + + ++ A+ + + +
Sbjct: 29 AALQLLQEAVNSKRQEEAEPAAEEAELQAELIQQELAINDQLSQALNQQTERLNALASD- 87
Query: 311 VEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNL--ESHVANIMLKLE 368
++ L ++ Q+ +REQ + L L + ++LG L +
Sbjct: 88 ----DRQLANLLLQLLQSSRTIREQIAVLRGSLLLSRILLQQLGPLPEAGQPQEQFEVTQ 143
Query: 369 ERQN-TSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHKTAR 427
ER +E I N L + +T +++D I+ T R
Sbjct: 144 ERDALQAEKAYI-----NALEGQAEQLTAEVRD-----------------ILDQILDTRR 181
Query: 428 SMLNSINKS 436
+LNS+
Sbjct: 182 ELLNSLLSQ 190
>gnl|CDD|36214 KOG0996, KOG0996, KOG0996, Structural maintenance of chromosome
protein 4 (chromosome condensation complex Condensin,
subunit C) [Chromatin structure and dynamics, Cell cycle
control, cell division, chromosome partitioning].
Length = 1293
Score = 29.9 bits (67), Expect = 2.4
Identities = 57/413 (13%), Positives = 146/413 (35%), Gaps = 26/413 (6%)
Query: 81 SPIQREDDCNVVRTNDDTKQIFNLLRKKLS--NPHLQQHIESKTEQNGGIDPNLQSESLP 138
++ +R +K+ L + LS + +QH E E + E +P
Sbjct: 759 KKVKGGRMGTSIRVTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKL--RERIP 816
Query: 139 TIPGTAIREDDDIDIFHSDMAKLSKSITEL-CRIISIPGIKKSHSQLEKILSKMENIAKE 197
+ + + + L I EL ++ KK +LE+ + +++
Sbjct: 817 ELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELK----- 871
Query: 198 CSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLV 257
+ VE + A + + + +N ++I Q + + I + V
Sbjct: 872 ---KEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTV 928
Query: 258 SIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYA---QSYTQKFVEKF 314
+I S N+ K L+E + + + +L ++ ++ + A + ++ E
Sbjct: 929 AIKTSDRNIAKAQKKLSE--LEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESL 986
Query: 315 EKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQN-- 372
++ + + ++ + + + + R+D+ K+ G L + I + E+
Sbjct: 987 KEIKKELRDLKSELENIKKSENELKAERIDIENKLEAINGELNEIESKIK-QPEKELKKL 1045
Query: 373 -----TSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHKTAR 427
T P I ++E+ +++ +++ + L E D V +
Sbjct: 1046 SLCNMTETRPQIELDVESPEELEAEMLEDNINEKIALLEKRVEELREVDLGVIAEYAKKV 1105
Query: 428 SMLNSINKSQDIERILQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKL 480
+ + + E +E++K ++ + F + L +++Q +
Sbjct: 1106 ELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLKEMYQMI 1158
>gnl|CDD|31697 COG1508, RpoN, DNA-directed RNA polymerase specialized sigma
subunit, sigma54 homolog [Transcription].
Length = 444
Score = 29.5 bits (66), Expect = 2.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 2 SGLTPLKDHSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLS 50
GL LK S +++ E S IK I+ E+K KPLS
Sbjct: 360 RGLFELKYFFSSSLASSEGGEASSTEAIKALIKKLIEA---EDKKKPLS 405
>gnl|CDD|30902 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 29.4 bits (66), Expect = 3.2
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 286 DTKLSEIKTAVEKN-RKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDV 332
D LSEI+ V KN R + T+K E ++L+ +G +V+ +HSD+
Sbjct: 433 DDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDI 480
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 29.4 bits (67), Expect = 3.3
Identities = 12/17 (70%), Positives = 12/17 (70%)
Query: 470 YDMLVKIFQKLGTLTEE 486
D L KIFQ LGT TEE
Sbjct: 205 IDQLFKIFQILGTPTEE 221
>gnl|CDD|39109 KOG3906, KOG3906, KOG3906, Tryptophan 2,3-dioxygenase [Amino acid
transport and metabolism].
Length = 399
Score = 28.9 bits (64), Expect = 4.9
Identities = 38/176 (21%), Positives = 65/176 (36%), Gaps = 46/176 (26%)
Query: 240 FDKNNNGFAASGIDE-KLVSIVNSTHNLLSLLKLLNEKIS-------------------T 279
D + +DE K + IV+ + +LKLL E+I+
Sbjct: 86 LDSVRKLLNNTVVDETKTLKIVSRLDRVTKILKLLVEQITILETMTPLDFVDFRKYLTPA 145
Query: 280 KGVLSFDTKLSEIKTAVEKNRKY---AQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQ 336
G S +L E K V + R+ AQ Y F + +++ + ++
Sbjct: 146 SGFQSLQFRLLENKLGVLQERRVKYNAQHYKDVFND-------------EELKTLNVSEE 192
Query: 337 KPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKD 392
+ + L+L+E ER LES N +K E+ ++ R LE+ D
Sbjct: 193 EKS--LLELVESWLERTPGLESTGFNFWIKYEK--------SVNRYLEDLAKQAAD 238
>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element.
Length = 370
Score = 28.9 bits (64), Expect = 5.5
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 2/107 (1%)
Query: 312 EKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQ 371
EK K L + + +++ + R +K IE +R G +++ N + ++EER
Sbjct: 94 EKCLKELMELKKKARELKEECRSIKKEHMETTLDIENQKKRQGVVDTSFTNRIQEMEERI 153
Query: 372 NTSEDPA--ILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLED 416
+ +ED I R + K L N + +R P+ + G+ +
Sbjct: 154 SGAEDSIEEIKRTGKFNEKRKKRLEQNIQEIQDYVRRPNLRIIGVPE 200
>gnl|CDD|147394 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 447
Score = 28.8 bits (65), Expect = 5.5
Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 10/60 (16%)
Query: 295 AVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLG 354
AVEKN A QK V E G +V I SD+RE + P K D++ + E LG
Sbjct: 219 AVEKNP-NAVVTLQKRVNF-----EEWGDKVTLISSDMREWKGPEKA--DIL--VSELLG 268
>gnl|CDD|38808 KOG3602, KOG3602, KOG3602, WD40 repeat-containing protein [General
function prediction only].
Length = 1459
Score = 28.5 bits (63), Expect = 5.7
Identities = 34/187 (18%), Positives = 60/187 (32%), Gaps = 29/187 (15%)
Query: 355 NLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGL 414
+L H+ + KL E S A + L ++ KD+ + E H
Sbjct: 197 SLGRHLDSEAQKLLETLRDSRSLAKGEEENAEDLTVE-WTGRRGKDSESHPEYLNHFLQE 255
Query: 415 EDY-IVKTAHKTARSMLNSINKSQ-------DIERILQKNMHEYCKEIQKVHAEQTIK-- 464
++ +N N+S +I R + E+ + K++A Q +
Sbjct: 256 FYKSLLSLVDSAMEKEVNMQNQSDPEVLQHLEICREIFFGRPEFILKA-KLYALQPLNLR 314
Query: 465 -------------NFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSNDLSPNHQASHKYSEL 511
Y L + F+ LGTL + ++ S+ Q Y
Sbjct: 315 GCGKTSLLLAIAAFLPEWYPHLRRYFRFLGTLPDSSIQVAELYSSCA----QIDKNYLVP 370
Query: 512 FKNLCSD 518
KNL +
Sbjct: 371 IKNLPTC 377
>gnl|CDD|35383 KOG0161, KOG0161, KOG0161, Myosin class II heavy chain
[Cytoskeleton].
Length = 1930
Score = 28.7 bits (64), Expect = 6.3
Identities = 41/231 (17%), Positives = 83/231 (35%), Gaps = 16/231 (6%)
Query: 271 KLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQ-----SYTQKFVEKFEKHLESIGAQV 325
+ +E + +K L D EI+ N+ Q +++ ++ LE
Sbjct: 1597 RSKSEALRSKKKLEGDINELEIQLDH-ANKANEDAQKQLKKLQAQLKELQRELEDAQRAR 1655
Query: 326 QDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAILRNLEN 385
+++ + E ++ +E++ E+L LE L+LEE +E L +
Sbjct: 1656 EELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEE---LAERVNELNAQNS 1712
Query: 386 QLLNIKDLVTNDLKD-NRTLREPDQHVFGLEDYIVKT---AHKTARSMLNSINKSQDIER 441
L K + ++ L E + E+ K A K A + SQ +ER
Sbjct: 1713 SLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLER 1772
Query: 442 I---LQKNMHEYCKEIQKVHAEQTIKNFTTLYDMLVKIFQKLGTLTEEGRR 489
+ L++ + + + + + + +I + L E RR
Sbjct: 1773 LKKSLERQVKDLQLRLDEAEQAALKGGKKQIAKLEARIRELESELEGEQRR 1823
>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP). This family
consists of several eukaryotic kinesin-associated (KAP)
proteins. Kinesins are intracellular multimeric
transport motor proteins that move cellular cargo on
microtubule tracks. It has been shown that the sea
urchin KRP85/95 holoenzyme associates with a KAP115
non-motor protein, forming a heterotrimeric complex in
vitro, called the Kinesin-II.
Length = 708
Score = 28.3 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 240 FDKNNNGFAASGIDEKLVSIVNSTHNLL---SLLKLLNEKISTKGVLSFDTKL 289
FD+N N +GI EKL+ + H L +L L N LSFDT L
Sbjct: 316 FDENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFN--------LSFDTGL 360
>gnl|CDD|33502 COG3707, AmiR, Response regulator with putative antiterminator
output domain [Signal transduction mechanisms].
Length = 194
Score = 27.9 bits (62), Expect = 9.4
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 340 KPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPAIL 380
P LD+ E L +A + +LEER+ +L
Sbjct: 114 LPILDVAVSRFEERRALRRELAKLKDRLEERKVIERAKGLL 154
>gnl|CDD|35702 KOG0481, KOG0481, KOG0481, DNA replication licensing factor, MCM5
component [Replication, recombination and repair].
Length = 729
Score = 28.0 bits (62), Expect = 9.6
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 10 HSSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKP-LSQEQKEKIKILWSSLRKIA 68
H S A ++ E G I ++K +IQ K P LS E EK+ + ++RK
Sbjct: 531 HVSKANAQTDSQEENEGEIPIEKLKRYIQYC--RLKCGPRLSAEAAEKLSSRYVTMRKGV 588
Query: 69 GSNEEVSDPNLNSPI 83
+E+ SD + PI
Sbjct: 589 RQHEQDSDKRSSIPI 603
>gnl|CDD|176521 cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase
domain of uncharacterized bacterial
glycerophosphodiester phosphodiesterases. This
subfamily corresponds to the glycerophosphodiester
phosphodiesterase domain (GDPD) present in
uncharacterized bacterial glycerophosphodiester
phosphodiesterases. In addition to a C-terminal GDPD
domain, most members in this family have an N-terminus
that functions as a membrane anchor.
Length = 220
Score = 27.9 bits (63), Expect = 9.9
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 19/100 (19%)
Query: 260 VNSTHNLLSLLKLLNEKISTKG----VLSFDTKLS-----------EIKTAVEKNRKYAQ 304
VN L+L +L I G + S D L+ E+K + +
Sbjct: 56 VNKKVWDLTLEELKKLTIGENGHGAKIPSLDEYLALAKGLKQKLLIELKP----HGHDSP 111
Query: 305 SYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLD 344
+KFV+ ++++L QV + V E+ K P++
Sbjct: 112 DLVEKFVKLYKQNLIENQHQVHSLDYRVIEKVKKLDPKIK 151
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.312 0.129 0.357
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,552,320
Number of extensions: 386163
Number of successful extensions: 1013
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 59
Length of query: 673
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 573
Effective length of database: 4,102,837
Effective search space: 2350925601
Effective search space used: 2350925601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (27.5 bits)