RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(673 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 63.8 bits (155), Expect = 1e-10
Identities = 76/442 (17%), Positives = 137/442 (30%), Gaps = 167/442 (37%)
Query: 312 EKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQ 371
E+F K L + +D +P P E +G+ LG +V+ L E
Sbjct: 35 EQFNKILP---EPTEGFAAD----DEPTTP----AELVGKFLG----YVS----SLVEPS 75
Query: 372 NTSEDPAILRNL----ENQLL---NIKDLVTNDLKDNRTLREPDQHVFGLEDYIVKTAHK 424
+ +L EN L +I L L++N T + + +++YI
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL--IKNYI------ 127
Query: 425 TARSMLN-SINK----------SQDIERIL-----QKNMHEYCKEIQKVHAEQTIKNFTT 468
TAR M +K + +++ Q N +Y +E++
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR------------D 175
Query: 469 LYDM---LVKIFQKLGTLTEEGRRLPYSTSNDLSPNHQASHK-YSELFKNLCS-----DN 519
LY LV + L ++L + K +++ N+ N
Sbjct: 176 LYQTYHVLVGDL-----IKFSAETL-----SELIRTTLDAEKVFTQGL-NILEWLENPSN 224
Query: 520 TPSVNQTRVESNTYNEQYPILSSNNS-----LDQ--------HN---HPHDISE------ 557
TP Y +LS S + Q P ++
Sbjct: 225 TPDK------------DY-LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 558 --TQG-------------DSVYDQKKREKE--FNSPHDI----QHMLERVSLIQQGILED 596
+QG +S + ++ F I SL ILED
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFF----IGVRCYEAYPNTSL-PPSILED 326
Query: 597 --DN--TIPTYISAVRRATSTSTMRSNDLKEKNIGKKIWNFTKYITSNQWVTSIMLV--A 650
+N +P+ + ++ +L ++ + + ++ + + V I LV A
Sbjct: 327 SLENNEGVPSPMLSIS-----------NLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGA 374
Query: 651 TLLV-----SSFLLSPALLVRE 667
LV S L L +R+
Sbjct: 375 KNLVVSGPPQS-LYGLNLTLRK 395
Score = 60.0 bits (145), Expect = 2e-09
Identities = 50/231 (21%), Positives = 83/231 (35%), Gaps = 86/231 (37%)
Query: 21 LEN----PSGM---TDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKILWSSLRKIAG-SNE 72
LEN PS M +++ + + +Q + + N L ++ ++I SL + G N
Sbjct: 328 LENNEGVPSPMLSISNLTQEQ--VQDYV-NKTNSHLPAGKQ--VEI---SL--VNGAKNL 377
Query: 73 EVSDP-----NLNSPIQREDDCNVVRTNDDTKQI-FNLLRK-KLSN-------P-HLQQH 117
VS P LN + R+ + D +I F+ RK K SN P H
Sbjct: 378 VVSGPPQSLYGLNLTL-RKAKAP---SGLDQSRIPFSE-RKLKFSNRFLPVASPFH-SHL 431
Query: 118 IESKTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFH----SDMAKLSKSITE-LCRII 172
+ ++ I+ +L ++ + I+ I ++ SD+ LS SI+E + I
Sbjct: 432 LVPASDL---INKDLVKNNV-SFNAKDIQ----IPVYDTFDGSDLRVLSGSISERIVDCI 483
Query: 173 SIPGIKKSHSQLEKILSKMENIAKECSLQSVENNWKGALQ----HFKKLDF 219
L V W+ Q H LDF
Sbjct: 484 -------------------------IRLP-V--KWETTTQFKATHI--LDF 504
Score = 54.6 bits (131), Expect = 7e-08
Identities = 111/637 (17%), Positives = 171/637 (26%), Gaps = 298/637 (46%)
Query: 136 SLPTIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQ-LEKILSKMENI 194
LP P DD+ + EL + L + S +E
Sbjct: 40 ILPE-PTEGFAADDEP-----------TTPAELV------------GKFLGYVSSLVEPS 75
Query: 195 AKECSLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDE 254
Q + L F + + + N+
Sbjct: 76 KVGQFDQVLNL----CLTEF----------------------ENCYLEGND--------- 100
Query: 255 KLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKY--AQSYTQKFVE 312
I H L + KLL E DT L + K + + Y A+ ++
Sbjct: 101 ----I----HALAA--KLLQEN---------DTTLVKTKELI---KNYITARIMAKR--- 135
Query: 313 KFEKHLESI----------------GAQ--VQDIHSDVREQQKPAKPRL-DLIEKIGERL 353
F+K S G Q D ++R+ + + DLI+ E L
Sbjct: 136 PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 354 GNLESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKD-LVTNDLKDNRTLREPDQH-- 410
L + Q LNI + L +N + PD+
Sbjct: 196 SEL-----------------IRTTLDAEKVFTQGLNILEWL------ENPSNT-PDKDYL 231
Query: 411 --------VFGLED---YIVKTAH------KTARSMLN-SINKSQDIERILQKNMHEYCK 452
+ G+ Y+V TA RS L + SQ +
Sbjct: 232 LSIPISCPLIGVIQLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGL------------- 277
Query: 453 EIQKVHA---------EQTIKNFTTLYDMLVKIFQKLGTLTEEGRRLPYSTSNDLSPNHQ 503
V A E + +L I G R ++
Sbjct: 278 ----VTAVAIAETDSWESFFVSVRKAITVLFFI----------GVR-----------CYE 312
Query: 504 ASHKYSELFKNLCSDNTPSVNQTRVESNTYNEQYP--ILS-SNNS-------LDQHNH-- 551
A S L PS+ + +E+ NE P +LS SN + +++ N
Sbjct: 313 AYPNTS-L--------PPSILEDSLEN---NEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 552 PHD----ISETQGD----------SVY---------------DQ-----KKREKEF---- 573
P IS G S+Y DQ +R+ +F
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 574 ---NSP-HDIQHMLERVSLIQQGILED-----------DNTIPTYISAVRRATSTSTMRS 618
SP H H+L S I +D D IP Y T
Sbjct: 421 LPVASPFH--SHLLVPAS---DLINKDLVKNNVSFNAKDIQIPVY--------DTFD--G 465
Query: 619 NDLKE--KNIGKKIWNFTKYITSN--QWVTSIMLVAT 651
+DL+ +I ++I I +W T+ AT
Sbjct: 466 SDLRVLSGSISERI---VDCIIRLPVKWETTTQFKAT 499
Score = 52.3 bits (125), Expect = 4e-07
Identities = 91/593 (15%), Positives = 167/593 (28%), Gaps = 272/593 (45%)
Query: 28 TDIHRI---------------KNWIQ------KVIGEEKNKP-----LSQEQKEKIKILW 61
DIH + K I+ + +K + +++
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLV- 157
Query: 62 SSLRKIA-----GSNE----EVSD------PNLNSPIQREDDC--NVVRTNDDTKQIF-- 102
A G+ + E+ D + I+ + ++RT D +++F
Sbjct: 158 ------AIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 103 --NLLRKKLSNPHLQQHIESKTEQNGGIDPN---LQSE--SLPTIPGTAIREDDDIDIFH 155
N+L + L NP P+ L S S P I G I + H
Sbjct: 212 GLNIL-EWLENPSNT--------------PDKDYLLSIPISCPLI-GV-------IQLAH 248
Query: 156 SDMAKLSKSITELCRIISI-PG-----IKKS--HSQLEKILSKMENIAKECSLQSVENNW 207
+T +++ PG +K + HSQ +++ + IA ++W
Sbjct: 249 Y-------VVT--AKLLGFTPGELRSYLKGATGHSQ--GLVTAVA-IA-------ETDSW 289
Query: 208 KGALQHFKKLDFKNLHEKINTL-----SCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNS 262
+ F F ++ + I L C + + + + ++ +S
Sbjct: 290 E----SF----FVSVRKAITVLFFIGVRCY----EA--------YPNTSLPPSILE--DS 327
Query: 263 THN-------LLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFE 315
N +LS+ L+ + V Q +V K
Sbjct: 328 LENNEGVPSPMLSI----------SN-------LT--QEQV-----------QDYVNKTN 357
Query: 316 KHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQN--T 373
HL P V I L + +N
Sbjct: 358 SHL----------------------PA--------------GKQVE-ISL-VNGAKNLVV 379
Query: 374 SEDPAILRNLENQLLNIKDLVTNDLKDNR---TLREPD-QHVFGLEDYIVKTA--H---- 423
S P L L L K + L +R + R+ + F L + + H
Sbjct: 380 SGPPQSLYGLNLTLRKAK--APSGLDQSRIPFSERKLKFSNRF-LP--V--ASPFHSHLL 432
Query: 424 KTARSMLNSINKSQDIERI----LQ---------KNMHEYCKEI----------QKVHAE 460
A ++N ++ +Q ++ I V E
Sbjct: 433 VPASDLINKDLVKNNVS-FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWE 491
Query: 461 QTIKNF--TTLYDMLVKIF-----QKLGTLT---EEGR--RLPYSTSNDLSPN 501
T F T + D F LG LT ++G R+ + + D++P+
Sbjct: 492 TTT-QFKATHILD-----FGPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPD 538
Score = 31.5 bits (71), Expect = 0.69
Identities = 61/281 (21%), Positives = 102/281 (36%), Gaps = 97/281 (34%)
Query: 201 QSVENNWKGALQHFK-KLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSI 259
++ ++ W A HFK F L IN N + T + G I E ++
Sbjct: 1640 KAAQDVWNRADNHFKDTYGFSILDIVIN------NPVNLTI--HFGGEKGKRIRENYSAM 1691
Query: 260 VNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAV----EKNRKYAQSYTQ---KFVE 312
+ T +++ K+ T+ + +++E T+ EK A +TQ +E
Sbjct: 1692 IFET--------IVDGKLKTEKIFK---EINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 313 K--FE----KHL---------ESIG--------AQVQDIHSDVR------EQQKPAKPRL 343
K FE K L S+G A V I S V + A PR
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 344 DL---------------------------IEKIGERLGNLESHVANIMLKLEERQNTSED 376
+L +E++G+R G L V + +E +Q +
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL---VEIVNYNVENQQYVAAG 1857
Query: 377 PAILRNLE--NQLLN-IK----DLVTNDLKDNRTLREPDQH 410
LR L+ +LN IK D++ +L+ + +L E + H
Sbjct: 1858 D--LRALDTVTNVLNFIKLQKIDII--ELQKSLSLEEVEGH 1894
Score = 28.8 bits (64), Expect = 4.4
Identities = 27/119 (22%), Positives = 45/119 (37%), Gaps = 26/119 (21%)
Query: 571 KEFNSPH----DIQHMLERVSLIQQ---GILEDDNTIPTYISAVRRATSTSTMRSND--L 621
EF + + DI H L L+Q+ +++ I YI+A A +SN
Sbjct: 89 TEFENCYLEGNDI-HALA-AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALF 146
Query: 622 KEKNIGK-KIW-------NFTKYIT--SNQWVTSIMLVATLLVSSFLLSPAL--LVRET 668
+ G ++ N Y + + T +LV L+ S + L L+R T
Sbjct: 147 RAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFS---AETLSELIRTT 202
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 32.2 bits (72), Expect = 0.37
Identities = 39/357 (10%), Positives = 106/357 (29%), Gaps = 29/357 (8%)
Query: 44 EKNKPLSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFN 103
K+ P++ +K L+ + ++ + + V R+ ++
Sbjct: 344 VKSTPVNVPISQKFTDLFEKMVPVSVQQSL-------AAYNQRKADLVNRSIAQMREATT 396
Query: 104 LLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDMAKLSK 163
L L+ L + + ++ ++S ++ E I + +L +
Sbjct: 397 LANGVLA--SLNLPAAIEDVSGDTVPQSILTKSR------SVIEQGGIQTVDQLIKELPE 448
Query: 164 SITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLH 223
+ ++ + ++L + E + + E + K
Sbjct: 449 LLQRN---------REILDESLRLLDEEEATDNDLRAKFKERWQRTPSNELYKPLRAEGT 499
Query: 224 EKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVL 283
L + + + + K +N+ + K + +
Sbjct: 500 NFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLK 559
Query: 284 SFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRL 343
S + L E+K E +S KF + + + V E +
Sbjct: 560 SLLSNLDEVKKEREGLENDLKSVNFDMTSKFLT-ALAQDGVINEEALSVTELDRVYGGLT 618
Query: 344 DLIEKIGERLGNLESHVANIMLKLEERQNTSEDPA----ILRNLENQLLNIKDLVTN 396
+++ ++ L ++ + + + ++ + +L+NL N +LV N
Sbjct: 619 TKVQESLKKQEGLLKNIQVSHQEFSKMKQSNNEANLREEVLKNLATAYDNFVELVAN 675
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.9 bits (71), Expect = 0.52
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 18/47 (38%)
Query: 623 EKNIGKKIWNFTKYITSNQWVTSIMLVATLLVSSFLLSPALLVRETF 669
EK KK+ Q S+ L A S +PAL ++ T
Sbjct: 18 EKQALKKL----------Q--ASLKLYAD---DS---APALAIKATM 46
Score = 29.6 bits (65), Expect = 2.3
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 53 QKEKIKILWSSLRKIAGSNEEVSDPNL 79
+K+ +K L +SL K+ + S P L
Sbjct: 18 EKQALKKLQASL-KLYADD---SAPAL 40
Score = 28.8 bits (63), Expect = 3.6
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 11/30 (36%)
Query: 503 QASHK-YSELFKNLCSDNTP--SVNQTRVE 529
QAS K Y++ D+ P ++ T +E
Sbjct: 26 QASLKLYAD-------DSAPALAIKAT-ME 47
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS,
DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP:
d.287.1.2 d.287.1.2
Length = 406
Score = 31.5 bits (70), Expect = 0.55
Identities = 40/323 (12%), Positives = 85/323 (26%), Gaps = 19/323 (5%)
Query: 79 LNSPIQREDDCNVVRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLP 138
+ + D + L + + IE+ G N++ L
Sbjct: 101 ADKNFFCGQSNCTLNLLDPLELDLKFAYYALKSQQ--ERIEAL--AFGTTIQNIRISDLK 156
Query: 139 TIPGTAIREDDDIDIFHSDMAKLSKSITELCRIISIPGIKKSHSQLEKILSKMENIAKEC 198
+ ++ + ++ + + L +I I K K+ S E
Sbjct: 157 ELEIPFTSNKNEQHAIANTLSVFDERLENLASLIEIN-RKLRDEYAHKLFSLDEAFLSHW 215
Query: 199 SLQSVENNWKGALQHFKKLDFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVS 258
L+++++ + K + +N GF A EK
Sbjct: 216 KLEALQSQMHEITLGEIFNFKSGKYLKSEERLEEGKFPYYGAGIDNTGFVAEPNTEKDTI 275
Query: 259 IVNSTHNLLSLLKLLNEKISTKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHL 318
+ S L ++ ++ + K+++K K
Sbjct: 276 SIISNGYSLGNIRYHEIPWFNGTGSIA------LEPMNNEIYVPFFYCALKYLQKDIKER 329
Query: 319 ESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKLEERQNTSEDPA 378
E + P L K G+ + L+ + +L
Sbjct: 330 MKSDDSPFLSLKLAGEIKVPYVKSFQLQRKAGKIVFLLDQKLDQYKKELSSLTV------ 383
Query: 379 ILRN-LENQLLNIKDLVTNDLKD 400
+R+ L +L T +KD
Sbjct: 384 -IRDTLLKKLFPDMTERTKSIKD 405
>2ixn_A Serine/threonine-protein phosphatase 2A activator 2; PP2A
phosphatase activator prolyl isomerase PTPA, isomerase;
2.8A {Saccharomyces cerevisiae} SCOP: a.268.1.1
Length = 310
Score = 31.0 bits (70), Expect = 0.93
Identities = 14/101 (13%), Positives = 44/101 (43%), Gaps = 24/101 (23%)
Query: 140 IPGTAIREDDDIDIFHSDMAKLSKSITELCRII-----SIPGIKKSH---------SQLE 185
+P + DD+ ++ S + + I S+ G + S + +
Sbjct: 2 LPEKRLLTPDDMKLWEE-----SPTRAHFTKFIIDLAESVKGHENSQYKEPISESINSMM 56
Query: 186 KILSKMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKI 226
+LS++++I ++ + ++ + F K++F++ ++++
Sbjct: 57 NLLSQIKDITQKHPVIKDADSSR-----FGKVEFRDFYDEV 92
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activating, cell
membrane, disulfide bond, glycoprotein, hydrolase,
membrane, protease, secreted; 1.30A {Homo sapiens} PDB:
3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A
3dfl_A*
Length = 261
Score = 29.6 bits (65), Expect = 2.6
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 5/43 (11%)
Query: 11 SSCAVSKKSELENPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQ 53
+C + P T +WIQ + E + + + Q Q
Sbjct: 216 DACGARNR-----PGVYTLASSYASWIQSKVTELQPRVVPQTQ 253
>2ixm_A Serine/threonine-protein phosphatase 2A regulatory subunit B'; 2
PTPA, ppiase, hydrolase activator; 1.5A {Homo sapiens}
SCOP: a.268.1.1 PDB: 2hv6_A 2hv7_A* 2g62_A
Length = 303
Score = 29.0 bits (65), Expect = 3.1
Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 17/97 (17%)
Query: 139 TIPGTAIREDDDIDIFHSDMA---------KLSKSITELCRIISIPGIKKSHSQLEKILS 189
IP I D+ + A L++ + ++ + ++ +L +L+
Sbjct: 5 IIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKG-KKLTFEYRVSEAIEKLLALLN 63
Query: 190 KMENIAKECSLQSVENNWKGALQHFKKLDFKNLHEKI 226
++ E F ++ + K+
Sbjct: 64 TLDRWIDETPP-------VDQPSRFGNKAYRTWYAKL 93
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell
shape regulation; 2.5A {Listeria monocytogenes}
Length = 255
Score = 29.2 bits (64), Expect = 3.3
Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
Query: 357 ESHVANIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHVFGLED 416
S ++ + + + +NT + L+ +L ++ V + K+N+ L+E + D
Sbjct: 8 TSFISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKDLKESLDITDSIRD 67
Query: 417 YIVKTAHKTARSMLNSINKSQDIERILQKNMHEYCKEIQKVH 458
Y A +R+ + N +I++ +
Sbjct: 68 YDPLNASVISRNP-TNWNDQVEIDKGSSDGVKPDMAVTTPSG 108
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics,
transferase; 1.80A {Haemophilus influenzae} SCOP:
c.1.10.4 PDB: 3e9a_A
Length = 292
Score = 29.0 bits (64), Expect = 3.5
Identities = 14/134 (10%), Positives = 35/134 (26%), Gaps = 6/134 (4%)
Query: 171 IISIPGIKKSHSQLEKILSKMENIAKECSLQSVEN--NWKGALQHFKKLDFKNLHEKINT 228
+ + +S ++ + ++ + V K + E +
Sbjct: 21 LFGGMNVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKI 80
Query: 229 LSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKISTKGVLSFDT- 287
+ + + +V I+ L L+ T V++
Sbjct: 81 FQELKDTFGVKIITDVHEIYQCQPVADVVDIIQLPAFLARQTDLVEAMAKTGAVINVKKP 140
Query: 288 ---KLSEIKTAVEK 298
S++ VEK
Sbjct: 141 QFLSPSQMGNIVEK 154
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 29.0 bits (64), Expect = 3.5
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 362 NIMLKLEERQNTSEDPAILRNLENQLLNIKDLVTNDLK----DNRTLREPDQHVFGLEDY 417
N+ +K +RQ L E Q IKD V N+L+ + + DQ+ F LE
Sbjct: 1243 NLNMKYRKRQ--------LVTREAQ---IKDWVENELEALKLEAEEIPSEDQNEFLLER- 1290
Query: 418 IVKTAHKTARSMLNS 432
+ H A S L +
Sbjct: 1291 -TREIHNEAESQLRA 1304
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, PSI,
protein structure initiative; 2.40A {Bacillus subtilis}
SCOP: a.195.1.1
Length = 189
Score = 28.2 bits (63), Expect = 5.6
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 306 YTQKFVEKFEKH-LESIGAQVQDIHSDVREQQKPAKPRLDL---IEKIGERLGNLE-SHV 360
YT + K L G ++DI V++ Q+ P L L +E + + L E H
Sbjct: 6 YTMNEMVDITKDMLNKRGVMIEDIARIVQKLQEKYNPNLPLSVCMENVEKVLNKREIIHA 65
Query: 361 ANIMLKLEE 369
L L++
Sbjct: 66 VLTGLALDQ 74
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage,
riken structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.68A {Homo sapiens}
PDB: 1v5h_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Length = 193
Score = 28.1 bits (62), Expect = 5.7
Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 9/42 (21%)
Query: 39 KVIGE------EKNKPLSQEQKEKIKILWSSLRKIAGSNEEV 74
KV GE E+++ LS+ +++ ++ +W+ ++ + E+V
Sbjct: 6 KVPGEMEIERRERSEELSEAERKAVQAMWA---RLYANCEDV 44
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 28.0 bits (61), Expect = 6.9
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 38/104 (36%)
Query: 308 QKFVEKFEKHLESIGAQVQDIHSDVREQQKPAKPRLDLIEKIGERLGNLESHVANIMLKL 367
+K+ E+ K L+ + D S V EQ+ K + DL E
Sbjct: 88 RKWREEQRKRLQEL-----DAASKVMEQEWREKAKKDLEE-------------------W 123
Query: 368 EERQNTSEDPAILRNLENQLLNIKDLVTNDLKDNRTLREPDQHV 411
+RQ SE +E K+ + N + D ++PD +
Sbjct: 124 NQRQ--SE------QVE------KNKINNRIADKAFYQQPDADI 153
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.312 0.129 0.357
Gapped
Lambda K H
0.267 0.0450 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,316,066
Number of extensions: 243309
Number of successful extensions: 868
Number of sequences better than 10.0: 1
Number of HSP's gapped: 862
Number of HSP's successfully gapped: 53
Length of query: 673
Length of database: 5,693,230
Length adjustment: 99
Effective length of query: 574
Effective length of database: 3,293,074
Effective search space: 1890224476
Effective search space used: 1890224476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.6 bits)