RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780463|ref|YP_003064876.1| putative peptidoglycan binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(673 letters)
>d1h2vc3 a.118.1.14 (C:481-790) CBP80, 80KDa nuclear cap-binding
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 310
Score = 39.5 bits (92), Expect = 8e-04
Identities = 30/219 (13%), Positives = 69/219 (31%), Gaps = 20/219 (9%)
Query: 99 KQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAIREDDDIDIFHSDM 158
+ + K +N + ++ N D + P I++F +
Sbjct: 22 LCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLK----------IEVFVQTL 71
Query: 159 AKL-SKSITELCRIISIPGIKKSHSQLEKILSKMENIAKECSLQSVENNWKGALQHFKKL 217
L +KS + ++ K H + + E K L+ + W+ Q L
Sbjct: 72 LHLAAKSFSHSFSALA-----KFHEVFKTLAESDE--GKLHVLRVMFEVWRNHPQMIAVL 124
Query: 218 DFKNLHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNLLSLLKLLNEKI 277
K + +I + C + + F + E L S + + + ++ E+
Sbjct: 125 VDKMIRTQI--VDCAAVANWIFSSELSRDFTRLFVWEILHSTIRKMNKHVLKIQKELEEA 182
Query: 278 STKGVLSFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEK 316
K + + + ++ + ++ EK E
Sbjct: 183 KEKLARQHKRRSDDDDRSSDRKDGVLEEQIERLQEKVES 221
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 30.7 bits (68), Expect = 0.34
Identities = 21/151 (13%), Positives = 45/151 (29%), Gaps = 8/151 (5%)
Query: 23 NPSGMTDIHRIKNWIQKVIGEEKNKPLSQEQKEKIKILWSSLRKIAGSNEEV---SDPNL 79
+G + L +E+KE L + L+K+A ++ E + N
Sbjct: 289 PGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTPHNP 348
Query: 80 NSPIQREDDCNVVRTNDDTKQIFNLLRKKLS-----NPHLQQHIESKTEQNGGIDPNLQS 134
S + T+ L +++S Q + T + +
Sbjct: 349 ISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYP 408
Query: 135 ESLPTIPGTAIREDDDIDIFHSDMAKLSKSI 165
+ + D+D+F + K +
Sbjct: 409 CAYLNAAAAIGMKMQDVDLFIKRLDKCLNIV 439
>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma
lineatum) [TaxId: 7389]}
Length = 230
Score = 28.2 bits (61), Expect = 2.3
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 24 PSGMTDIHRIKNWIQKVIG 42
P G + + +WIQ+ G
Sbjct: 209 PVGFSRVTSYMDWIQQNTG 227
>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 28.1 bits (61), Expect = 2.6
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 11 SSCAVSKKSELENPSGMTDIHRIKNWIQKVIG 42
CA K P T + ++WI++ G
Sbjct: 214 DGCAQRNK-----PGVYTRLPLFRDWIKENTG 240
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 28.0 bits (61), Expect = 2.9
Identities = 17/128 (13%), Positives = 39/128 (30%), Gaps = 13/128 (10%)
Query: 36 WIQKVIGEEKNKPLSQEQKEKIKILWSSLRKIAGS--NEEVSDPNLNSPIQREDDCNVVR 93
+G + L + QK K+L L ++ + + + + +
Sbjct: 318 VSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVESPIASC-------ISV 370
Query: 94 TNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAIREDDDIDI 153
+D + L +++ P KT+ G + + +DI
Sbjct: 371 NSDPVEIAAKLYNLRVTGPR----GIKKTDHFGNCYLGTYTHDYIVMNAAIGVRTEDIVN 426
Query: 154 FHSDMAKL 161
S + K+
Sbjct: 427 SVSKLEKI 434
>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab
(Uca pugilator) [TaxId: 6772]}
Length = 226
Score = 27.7 bits (60), Expect = 3.1
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 24 PSGMTDIHRIKNWIQKVIG 42
P T + +WIQ G
Sbjct: 205 PDAFTRVTYFLDWIQTQTG 223
>d1h6pa_ a.146.1.1 (A:) TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 203
Score = 26.7 bits (59), Expect = 6.5
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 222 LHEKINTLSCQMNVMQCTFDKNNNGFAASGIDEKLVSIVNSTHNL-LSLLKLLNEKISTK 280
+ E L + V+ C KN AS I +K +S +T L LL ++ EK
Sbjct: 107 VVESSRKLVKEAAVIICI--KNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAH 164
Query: 281 GVL---SFDTKLSEIKTAVEKNRKYAQSYTQKFVEKFEKHLE 319
V+ S++T ++ +E + A+ Y + +K L+
Sbjct: 165 PVIQNFSYETFQQKMLRFLESHLDDAEPY---LLTMAKKALK 203
>d2v3ia1 b.29.1.10 (A:1-434) Cellobiohydrolase I (cellulase,
Endoglucanase I, CBH1) {Trichoderma reesei, Cel7A
[TaxId: 51453]}
Length = 434
Score = 26.8 bits (59), Expect = 6.5
Identities = 12/56 (21%), Positives = 19/56 (33%)
Query: 509 SELFKNLCSDNTPSVNQTRVESNTYNEQYPILSSNNSLDQHNHPHDISETQGDSVY 564
+ LC DN ++ Y Y + +S NSL + G +Y
Sbjct: 54 NTWSSTLCPDNETCAKNCCLDGAAYASTYGVTTSGNSLSIGFVTQSAQKNVGARLY 109
>d1x9fa_ a.1.1.2 (A:) Extracellular dodecameric hemoglobin
(erythrocruorin), subunit IV (globin A) {Common
earthworm (Lumbricus terrestris) [TaxId: 6398]}
Length = 147
Score = 26.7 bits (58), Expect = 6.7
Identities = 10/71 (14%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 49 LSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKK 108
S E + +I+ +W + + ++ V+ I R ++ + +K +F ++
Sbjct: 3 CSYEDRREIRHIWDDVWSSSFTDRRVA-------IVRAVFDDLFKHYPTSKALFERVKID 55
Query: 109 -LSNPHLQQHI 118
+ + H+
Sbjct: 56 EPESGEFKSHL 66
>d1jl7a_ a.1.1.2 (A:) Glycera globin {Marine bloodworm (Glycera
dibranchiata) [TaxId: 6350]}
Length = 147
Score = 26.6 bits (58), Expect = 6.9
Identities = 8/69 (11%), Positives = 21/69 (30%), Gaps = 12/69 (17%)
Query: 49 LSQEQKEKIKILWSSLRKIAGSNEEVSDPNLNSPIQREDDCNVVRTNDDTKQIFNLLRKK 108
LS Q++ + W + + +E + + + +F
Sbjct: 2 LSAAQRQVVASTWKDIAGADNGAG----------VGKECLSKFISAHPEMAAVFG--FSG 49
Query: 109 LSNPHLQQH 117
S+P + +
Sbjct: 50 ASDPGVAEL 58
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal
domain {Leishmania mexicana [TaxId: 5665]}
Length = 258
Score = 26.1 bits (57), Expect = 9.3
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 92 VRTNDDTKQIFNLLRKKLSNPHLQQHIESKTEQNGGIDPNLQSESLPTIPGTAIREDDDI 151
+R+ + + L K + + IE+ N+ S + R D +
Sbjct: 114 IRSAEQVGDVRKALGPKGRDIMIICKIENHQ-----GVQNIDSIIEESDGIMVARGDLGV 168
Query: 152 DIFHSDMAKLSKSITELCRIISIPGIKKSH 181
+I + K + C + P I +
Sbjct: 169 EIPAEKVVVAQKILISKCNVAGKPVICATQ 198
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.357
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,311,499
Number of extensions: 107207
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 35
Length of query: 673
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 582
Effective length of database: 1,158,166
Effective search space: 674052612
Effective search space used: 674052612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.1 bits)