HHsearch results for GI: 254780464 and protein with PDBid: 3ih6_A

>3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.05  E-value=6.3e-07  Score=63.98  Aligned_cols=171  Identities=12%  Similarity=0.048  Sum_probs=101.1

Q ss_pred             CCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--EEEEEE--CCCE--E
Q ss_conf             719999858998799999983311448888983489999897335688898899999997087--679975--3223--7
Q gi|254780464|r   11 GITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGG--DINAYT--SLEH--T   84 (424)
Q Consensus        11 Gl~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~--~~na~t--~~d~--~   84 (424)
                      |-|.++.+.+++...+.+.+++-+..++ +.. ...++..++..|.   +. .|.+.+-..|.  ...++.  ..+.  +
T Consensus        12 ~~r~~~v~~~~~~~~v~~~~~~p~~~~~-d~~-al~vl~~iLg~g~---sS-rL~~~L~e~~l~~~~~a~~~~~~~~g~f   85 (197)
T 3ih6_A           12 GERSVTLRRAGGTPLVAAMYHLPAAGSP-DFV-GLDLAATILADTP---SS-RLYHALVPTKLASGVFGFTMDQLDPGLA   85 (197)
T ss_dssp             ----------CCSCEEEEEEECCCTTST-THH-HHHHHHHHHHSST---TS-HHHHHHTTTTSCSEEEEEEETTSSSCEE
T ss_pred             CCEEEEEECCCCCCEEEEEECCCCCCCC-CHH-HHHHHHHHHCCCC---CC-HHHHHHCCCCCEEEEEECCCCCCCCCEE
T ss_conf             8679998278760024778627999992-099-9999999977998---46-8999826466436887415655678338


Q ss_pred             EEEEECCCC-CCCCCHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             999612665-652100122232---2103566200112455676666511332111000000122222222222222103
Q gi|254780464|r   85 SYHAWVLKE-HVPLALEIIGDM---LSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKP  160 (424)
Q Consensus        85 ~~~~~~~~~-~~~~~l~ll~~~---~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~  160 (424)
                      .+++.+.++ +++.+.+.+.+.   +.+-.++++++++.|..++..+....+++...+.......++++ +  ....-..
T Consensus        86 ~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~eeL~~aK~~~~~~~~~~~~s~~~~a~~l~~~~~~g~-~--~~~~~~~  162 (197)
T 3ih6_A           86 MFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGD-W--RLFFLQR  162 (197)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTC-T--THHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-H--HHHHHHH
T ss_conf             999970655469999999999999876424529999999999999898863799999999999997599-6--5699999


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf             442000166776420112456630000025
Q gi|254780464|r  161 ETISSFTPEKIISFVSRNYTADRMYVVCVG  190 (424)
Q Consensus       161 ~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G  190 (424)
                      +.|+++|.+||+++.++|+.|+|+++++.+
T Consensus       163 ~~i~~vT~~dv~~~a~~yl~~~~~~v~~~~  192 (197)
T 3ih6_A          163 DRVREAKLDDVQRAAVAYLVRSNRTEGRYI  192 (197)
T ss_dssp             HHHHTCCHHHHHHHHHHHSSGGGCEEEEEC
T ss_pred             HHHHCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             999878999999999996780172899993