HHsearch results for GI: 254780464 and protein with PDBid: 3ih6_A
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.05 E-value=6.3e-07 Score=63.98 Aligned_cols=171 Identities=12% Similarity=0.048 Sum_probs=101.1
Q ss_pred CCEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCC--EEEEEE--CCCE--E
Q ss_conf 719999858998799999983311448888983489999897335688898899999997087--679975--3223--7
Q gi|254780464|r 11 GITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGG--DINAYT--SLEH--T 84 (424)
Q Consensus 11 Gl~v~~~~~~~~~~~i~~~~~~Gs~~e~~~~~G~ah~lehl~~~gt~~~~~~~~~~~l~~~G~--~~na~t--~~d~--~ 84 (424)
|-|.++.+.+++...+.+.+++-+..++ +.. ...++..++..|. +. .|.+.+-..|. ...++. ..+. +
T Consensus 12 ~~r~~~v~~~~~~~~v~~~~~~p~~~~~-d~~-al~vl~~iLg~g~---sS-rL~~~L~e~~l~~~~~a~~~~~~~~g~f 85 (197)
T 3ih6_A 12 GERSVTLRRAGGTPLVAAMYHLPAAGSP-DFV-GLDLAATILADTP---SS-RLYHALVPTKLASGVFGFTMDQLDPGLA 85 (197)
T ss_dssp ----------CCSCEEEEEEECCCTTST-THH-HHHHHHHHHHSST---TS-HHHHHHTTTTSCSEEEEEEETTSSSCEE
T ss_pred CCEEEEEECCCCCCEEEEEECCCCCCCC-CHH-HHHHHHHHHCCCC---CC-HHHHHHCCCCCEEEEEECCCCCCCCCEE
T ss_conf 8679998278760024778627999992-099-9999999977998---46-8999826466436887415655678338
Q ss_pred EEEEECCCC-CCCCCHHHHHHH---HHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf 999612665-652100122232---2103566200112455676666511332111000000122222222222222103
Q gi|254780464|r 85 SYHAWVLKE-HVPLALEIIGDM---LSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKP 160 (424)
Q Consensus 85 ~~~~~~~~~-~~~~~l~ll~~~---~~~p~~~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~g~~ 160 (424)
.+++.+.++ +++.+.+.+.+. +.+-.++++++++.|..++..+....+++...+.......++++ + ....-..
T Consensus 86 ~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~eeL~~aK~~~~~~~~~~~~s~~~~a~~l~~~~~~g~-~--~~~~~~~ 162 (197)
T 3ih6_A 86 MFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGD-W--RLFFLQR 162 (197)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTC-T--THHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-H--HHHHHHH
T ss_conf 999970655469999999999999876424529999999999999898863799999999999997599-6--5699999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHCC
Q ss_conf 442000166776420112456630000025
Q gi|254780464|r 161 ETISSFTPEKIISFVSRNYTADRMYVVCVG 190 (424)
Q Consensus 161 ~~i~~lt~~~l~~f~~~~y~p~n~~l~i~G 190 (424)
+.|+++|.+||+++.++|+.|+|+++++.+
T Consensus 163 ~~i~~vT~~dv~~~a~~yl~~~~~~v~~~~ 192 (197)
T 3ih6_A 163 DRVREAKLDDVQRAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHTCCHHHHHHHHHHHSSGGGCEEEEEC
T ss_pred HHHHCCCHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999878999999999996780172899993