PSIBLAST alignment of GI: 254780464 and protein with PDB id: 1hr6

>gi|15826320|pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase Length = 443
>gi|15826322|pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase Length = 443
>gi|15826324|pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase Length = 443
>gi|15826326|pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase Length = 443
 Score =  181 bits (458), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 117/437 (26%), Positives = 197/437 (45%), Gaps = 21/437 (4%)

Query: 4   RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAK 62
           R SK  +G+T+ TE +P   SA V + + AGSR E  + +G AHFLEH+ FKGT  R  +
Sbjct: 8   RTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQ 67

Query: 63  EIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNV 122
            I  EIE +G  +NAYTS E+T Y+A  L+E +P A++I+ D+L+ S  + S IERER+V
Sbjct: 68  GIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDV 127

Query: 123 VLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTAD 182
           ++ E    +    + +     E+ +KDQ +GR ILG  + I S T   +  ++++NY  D
Sbjct: 128 IIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGD 187

Query: 183 RMYVVCVGAVDHEFCVSQVESYFNVC-----------SVAKIKESMKPAVYVGGEYIQKR 231
           RM +   GAVDHE  V   + YF                  +    +   ++    +   
Sbjct: 188 RMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTT 247

Query: 232 DLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLC----YSISAH 287
            +A     + ++   Y         +       G  +     +            S  + 
Sbjct: 248 HIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSF 307

Query: 288 HENFSDNGVLYIASATAKENIMAL---TSSIVEVVQSLLENIEQREIDKECAKIHAKLIK 344
             +++D+G+  +   T              + E  +     I   E+++  A++ A L+ 
Sbjct: 308 STSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLL 367

Query: 345 SQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTP-TLAILGP 403
           S + S     +I +QV+  G  L  E++ + +  IT +DI+  A     + P ++  LG 
Sbjct: 368 SLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALG- 426

Query: 404 PMDHVPTTSELIHALEG 420
               VP  S +   L  
Sbjct: 427 NTSTVPNVSYIEEKLNQ 443