RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (424 letters)



>gnl|CDD|30957 COG0612, PqqL, Predicted Zn-dependent peptidases [General function
           prediction only].
          Length = 438

 Score =  297 bits (760), Expect = 5e-81
 Identities = 146/416 (35%), Positives = 231/416 (55%), Gaps = 13/416 (3%)

Query: 1   MNLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR 59
             L++    +G+ VIT   P   +  + V ++AGSR E   + G+AHFLEHM FKGTT  
Sbjct: 15  PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGL 74

Query: 60  TAKEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERE 119
            + E+ E  EK+GG +NA+TS ++T Y+  VL +++  AL+++ D+L N +F+  ++ERE
Sbjct: 75  PSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVERE 134

Query: 120 RNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNY 179
           + V+LEEI M +DD  D    R  E ++ +  +GRPILG  E+I + T E +  F  + Y
Sbjct: 135 KGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWY 194

Query: 180 TADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGE------YIQKRDL 233
             D M +V VG VD E  V  +E YF     A     + P   +G E        ++ DL
Sbjct: 195 QPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254

Query: 234 AEEHMMLGFNGCAYQSRDFYLTNILASILGDGM-SSRLFQEVREKRGLCYSISAHHENFS 292
            +  + LG+ G  Y S D Y   +L + L  G  SSRLFQE+REKRGL YS+S+  +  S
Sbjct: 255 EQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLS 314

Query: 293 DNGVLYIASATAKENIMALTSSIVEVVQSLLEN----IEQREIDKECAKIHAKLIKSQER 348
           D+G+  I + TA EN       + E++++L +       + E+D     +   L+ S + 
Sbjct: 315 DSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS 374

Query: 349 SYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGP 403
               A  + + ++  GS++  E++++ I A+T ED+  VAKK+ +    T+ +LGP
Sbjct: 375 PSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGP 430


>gnl|CDD|36178 KOG0960, KOG0960, KOG0960, Mitochondrial processing peptidase, beta
           subunit, and related enzymes (insulinase superfamily)
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 467

 Score =  215 bits (549), Expect = 2e-56
 Identities = 122/415 (29%), Positives = 213/415 (51%), Gaps = 16/415 (3%)

Query: 4   RISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE 63
            ++   +G+ V TE     +A V V I AGSR E ++ +G AHFLEH+ FKGT  R+   
Sbjct: 35  EVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAA 94

Query: 64  IVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVV 123
           +  EIE +G  +NAYTS E T Y+A  L + VP A++I+ D+L NS    S IERER+V+
Sbjct: 95  LELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVI 154

Query: 124 LEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADR 183
           L E+   + +  + +        ++   +GR ILG  E I S +   +  +++ +Y A R
Sbjct: 155 LREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHYKASR 214

Query: 184 MYVVCVGAVDHEFCVSQVESYFNVCSVAKIKES---MKPAVYVGGEY-IQKRDLAEEHMM 239
           M +   G V HE  V   E YF   S  +  +    + PA + G E  ++  DL   H+ 
Sbjct: 215 MVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLAHIA 274

Query: 240 LGFNGCAYQSRDFYLTNILASILGD---------GMSSRLFQEVREKRGLCYSISAHHEN 290
           +   G ++   D++   +  +I+G+          +SSRL Q++++ + LC+S  + + +
Sbjct: 275 IAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQ-LCHSFQSFNTS 333

Query: 291 FSDNGVLYIASATAKEN-IMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERS 349
           + D G+  I   T     I  L  S+++    L  ++ + E+++   ++   L+ S + +
Sbjct: 334 YKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGT 393

Query: 350 YLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVA-KKIFSSTPTLAILGP 403
              A +I +Q++  G  +   ++   I A+T +D+  VA K I+     +A +GP
Sbjct: 394 TPIAEDIGRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGP 448


>gnl|CDD|37278 KOG2067, KOG2067, KOG2067, Mitochondrial processing peptidase,
           alpha subunit [Posttranslational modification, protein
           turnover, chaperones].
          Length = 472

 Score =  192 bits (489), Expect = 2e-49
 Identities = 113/437 (25%), Positives = 201/437 (45%), Gaps = 33/437 (7%)

Query: 2   NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61
           N +++   +G+ V +E  P     V + I +GSR E +   G++HFLE + FK T + ++
Sbjct: 24  NTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSS 83

Query: 62  KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
           KEI+ E+EK+GG+ +  +S E   Y A    + V   +E++ D + N  F   ++E  R 
Sbjct: 84  KEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARR 143

Query: 122 VVLEEIGMSEDDSWDFLDARFSEMV----WKDQIIGRPILGKPETISSFTPEKIISFVSR 177
            V  EI    ++ W   +   +EM+    +    +G P+L   E I     E +  ++  
Sbjct: 144 AVKYEI----EELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKY 199

Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKP-AVYVGGEYIQKRDLAE- 235
            YT +RM +  VG V+HE  V   E         K+    +  A Y GGE     D  + 
Sbjct: 200 FYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQV 258

Query: 236 ------EHMMLGFNGCAYQSRDFYLTNILASILG-----------DGMSSRLFQEVREKR 278
                  H++LGF GC++   DF    +L  ++G            GM SRL+  V  + 
Sbjct: 259 TGGPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRY 318

Query: 279 GLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKI 338
              YS +A + ++SD G+  I ++   +        I + + ++   + Q E+++   ++
Sbjct: 319 HWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQL 378

Query: 339 HAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTL 398
            + L+ + E   +   ++ +QV+  G     ++ I  I  +T  DI  VA K+ +  P++
Sbjct: 379 KSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSV 438

Query: 399 AILG-----PPMDHVPT 410
           A  G     P  DH+  
Sbjct: 439 AAFGDGTGLPTYDHIGN 455


>gnl|CDD|144319 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16). 
          Length = 149

 Score =  132 bits (333), Expect = 2e-31
 Identities = 58/139 (41%), Positives = 87/139 (62%)

Query: 20  PIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79
           P D++ V + + AGSR E  + +G+AHFLEHM FKGT K  + E+ EE+EK+GG +NAYT
Sbjct: 9   PADTSAVGLWVDAGSRYEPDDNNGLAHFLEHMAFKGTKKYPSNELEEELEKLGGSLNAYT 68

Query: 80  SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLD 139
           S EHT Y+  VL + +P A++ + D   N  F+PS++ERER VV  E+   + +  + L 
Sbjct: 69  SREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVEYEVEAVDAEPQEVLL 128

Query: 140 ARFSEMVWKDQIIGRPILG 158
                  ++   +GR +LG
Sbjct: 129 DNLHAAAYRGTPLGRSLLG 147


>gnl|CDD|37794 KOG2583, KOG2583, KOG2583, Ubiquinol cytochrome c reductase,
           subunit QCR2 [Energy production and conversion].
          Length = 429

 Score =  118 bits (298), Expect = 2e-27
 Identities = 93/416 (22%), Positives = 181/416 (43%), Gaps = 21/416 (5%)

Query: 7   KTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVE 66
           K  +G+TV +   P   + + +  RAGSR E  ++ G++H L + + + T +R+A +IV 
Sbjct: 27  KLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVR 86

Query: 67  EIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEE 126
           E E++GG +++  + E        L++ +   L ++GD+L   +F P ++E   +VVL  
Sbjct: 87  ESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELE---DVVLAT 143

Query: 127 I--GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRM 184
           I   ++    +     +     +++  +G  +      + S +  ++  F ++++     
Sbjct: 144 IDADLAYQTPYTIAIEQLHAAAFRNG-LGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNA 202

Query: 185 YVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNG 244
            +V V  VDH+      + Y  +     +K +  PA Y GGE  +       H+ +   G
Sbjct: 203 VLVGVN-VDHDDLKQFADEYAPIRDGLPLKPA--PAKYSGGEARKDARGNRVHVAVAGEG 259

Query: 245 CAYQSRDFYLTN-ILASILGDGMSSRLFQEVREKRGLC-----YSISAHHENFSDNGVLY 298
            A  +        +L + LG+    +    +  +          S SA +  +SD+G+  
Sbjct: 260 AAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFG 319

Query: 299 IASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISK 358
           +  +        + SS V+ ++S L      +ID    K   K +K+   S + ALE++ 
Sbjct: 320 VYVSAQGSQAGKVVSSEVKKLKSAL----VSDIDNAKVKAAIKALKASYLSSVEALELAT 375

Query: 359 QVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTSEL 414
                  +   +  I  I  +T  D+   AKK  S   +LA  G  + +VP   EL
Sbjct: 376 GS-QANLVSEPDAFIQQIDKVTASDVQKAAKKFLSGKLSLAAYG-NLSNVPYLDEL 429


>gnl|CDD|147402 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain.
           Peptidase M16 consists of two structurally related
           domains. One is the active peptidase, whereas the other
           is inactive. The two domains hold the substrate like a
           clamp.
          Length = 182

 Score =  114 bits (288), Expect = 3e-26
 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 8/177 (4%)

Query: 165 SFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKE-----SMKP 219
           S T E +  F  ++Y+ D M +V VG VD +  ++  E YF     +  K       ++P
Sbjct: 1   SLTREDLKDFYKKHYSPDNMVLVVVGDVDLDELLALAEKYFGDLPASPPKPKPREPPLEP 60

Query: 220 AVYVGGEYI-QKRDLAEEHMMLGFNGCAY-QSRDFYLTNILASILGDGMSSRLFQEVREK 277
               G E +   +D+ +  + L F G       D    ++LA +LG G SSRLFQE+REK
Sbjct: 61  EELTGKEVVVPDKDVPQAKLALAFPGPPLGNDPDSAALDVLAELLGGGASSRLFQELREK 120

Query: 278 RGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDK 333
            GL YS+SA  +++SD G+  I +    EN+  +   I+E ++ L E  I + E+++
Sbjct: 121 EGLAYSVSAFLDSYSDTGLFGIYADLDPENLDEVIELILEELKKLAEEGITEEELER 177


>gnl|CDD|36177 KOG0959, KOG0959, KOG0959, N-arginine dibasic convertase NRD1 and
           related Zn2+-dependent endopeptidases, insulinase
           superfamily [Posttranslational modification, protein
           turnover, chaperones].
          Length = 974

 Score = 99.0 bits (246), Expect = 2e-21
 Identities = 78/368 (21%), Positives = 142/368 (38%), Gaps = 30/368 (8%)

Query: 4   RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRT-A 61
           R  + ++G+  +    P  D +   ++++ GS ++ ++  G+AHF EHMLF G+ K    
Sbjct: 29  RGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDE 88

Query: 62  KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121
            E  + + K GG  NAYT  EHT+Y+  V  +H+  AL+      S+  FN S  ERE  
Sbjct: 89  NEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVG 148

Query: 122 VVLEEI-GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISS-----FTPEKIISFV 175
            V  E       D W   D     +        +   G  +T+          ++++ F 
Sbjct: 149 AVDSEHEKNLNSDGW-RFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFY 207

Query: 176 SRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKR---- 231
              Y+++ M +V VG    +   S V   F+  S  K    + P      E ++K     
Sbjct: 208 KNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVRVV 267

Query: 232 ---DLAEEHMMLGFNGCAYQSRDFYLTN---ILASILGDGMSSRLFQEVREKRGLCYSIS 285
              D     +              Y +     L+ ++G      L   ++ + G   S+ 
Sbjct: 268 PIKDGRSLMISWPVPP----LNHHYKSKPLRYLSHLIGHEGPGSLLSYLK-RLGWATSLE 322

Query: 286 AHHENFS-----DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHA 340
           A    F+      N  + +      E++  +   +   ++ L     ++ I KE   I  
Sbjct: 323 AGIPEFASGYSFFNVSIDLTDE-GLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISE 381

Query: 341 KLIKSQER 348
              + Q++
Sbjct: 382 VKFRFQDK 389


>gnl|CDD|31228 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases,
           insulinase-like [Posttranslational modification, protein
           turnover, chaperones].
          Length = 937

 Score = 94.6 bits (235), Expect = 5e-20
 Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 20/327 (6%)

Query: 22  DSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR-TAKEIVEEIEKVGGDINAYTS 80
           D +   + +  GS ++ +E  G+AHFLEHMLF G+ K        E + K GG  NA T+
Sbjct: 44  DKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTA 103

Query: 81  LEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGM-SEDDSWDFLD 139
            E T+++  V  + +  AL+   D      FN   ++RERN V  E  M    D W    
Sbjct: 104 GERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRM-Y 162

Query: 140 ARFSEMVWKDQIIGRPILGKPETISSF----TPEKIISFVSRNYTADRMYVVCVGAVDHE 195
              +        + +   G  ET+S        +++  F  ++Y+A+ M +V  G    +
Sbjct: 163 QVQALTANPGHPLSKFSTGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLD 222

Query: 196 FCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAE-----EHMMLGF----NGCA 246
                    F        K    P   V  E   K            + + F    N   
Sbjct: 223 ELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAK 282

Query: 247 YQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKE 306
           ++S+       L+ ++G+     L   ++++ GL   +SA  +  S N  ++  S    +
Sbjct: 283 FRSKPD---EYLSHLIGNESPGSLLAWLKKQ-GLITELSAGLDPISGNYGVFAISYELTD 338

Query: 307 NIMALTSSIVEVVQSLLENIEQREIDK 333
             +A    ++ +    L  + ++ I K
Sbjct: 339 KGLAHYDRVIALTFQYLNLLREKGIPK 365


>gnl|CDD|31229 COG1026, COG1026, Predicted Zn-dependent peptidases,
           insulinase-like [General function prediction only].
          Length = 978

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 57/355 (16%)

Query: 35  RNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEK--VGGDINAYTSLEHTSYHAWVLK 92
           + E  +  G+AH LEH +  G+ K   K+   ++ K  +   +NA+T  + T Y      
Sbjct: 50  KTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVY------ 103

Query: 93  EHVPLALEIIGDMLS------NSSFNPS-------------DIERERN-----VVLEEIG 128
              P +     D  +      ++ F+P              + + E N     VV  E+ 
Sbjct: 104 ---PASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMK 160

Query: 129 MSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVC 188
            +       L     + ++     G    G P+ I   T E+  +F  ++Y      +  
Sbjct: 161 GAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFV 220

Query: 189 VGAVDHEFCVSQV-ESYFNVCSVAKIKESMKP------AVYVGGEYIQKRDLAEEH---M 238
            G +  E  +  + E         ++   +              EY    D  +E    +
Sbjct: 221 YGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRKVLEYPISFDEEDEDQGLL 280

Query: 239 MLGFNGCAYQSRDFYLT---NILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNG 295
            L + G +    D   +    +L  IL D  +S L Q + E  GL +   A      D+ 
Sbjct: 281 SLSWLGGSAS--DAEDSLALEVLEEILLDSAASPLTQALIES-GLGF---ADVSGSYDSD 334

Query: 296 VLYIASATAKENIMALTSSIVE-VVQSLLENIEQREIDKEC--AKIHAKLIKSQE 347
           +     +   + +     + ++ +V S L+ + +  IDK+   A +H      +E
Sbjct: 335 LKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKE 389



 Score = 37.9 bits (88), Expect = 0.006
 Identities = 71/390 (18%), Positives = 141/390 (36%), Gaps = 53/390 (13%)

Query: 47  FLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL-----------EHTSYHAWVLKEHV 95
           F   +   GT   + KE++ +IE+  G I+   S+              S     L+  V
Sbjct: 571 FAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKV 630

Query: 96  PLALEIIGDMLSNSSFNPSDIERERNVV---LEEIGMSEDDSWDFL-----DARFSEM-V 146
               E+I ++L+N+ F   D ER + ++   L ++  S  +S   +     ++R S    
Sbjct: 631 EKLFELIREILANTDF--HDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGA 688

Query: 147 WKDQIIGRPILGKPETISSFTPEKIISFVS------RNY--TADRMYVVCVGAVDHEFCV 198
            K+ + G   +     +SS   E     ++      R      + + +  +G +D    +
Sbjct: 689 LKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKILDL 748

Query: 199 SQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAE--------EHMMLGFN--GCAYQ 248
             +E+         +     P             L+E         +  L F+  G  Y 
Sbjct: 749 --LENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPYT 806

Query: 249 SRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENI 308
             D+    +L+  LG G    L+ ++REK G  Y  SA  +   + GV   AS      +
Sbjct: 807 HPDYAALQVLSEYLGSGY---LWNKIREK-GGAYGASASIDA--NRGVFSFASYRDPNIL 860

Query: 309 MALTSSIVEVVQSLLE-NIEQREIDKECAKIHA-KLIKSQERSYLRALEISKQVMFCGSI 366
                   + V+ L   N ++R++++  A +     + + E       +   + +   + 
Sbjct: 861 KTY-KVFRKSVKDLASGNFDERDLEE--AILGIISTLDTPESPASEGSKSFYRDLSGLTD 917

Query: 367 LCSEKIIDTISAITCEDIVGVAKKIFSSTP 396
              +   + +  +T EDI  V  K   +  
Sbjct: 918 EERQAFRERLLDVTKEDIKEVMDKYLLNFS 947


>gnl|CDD|36179 KOG0961, KOG0961, KOG0961, Predicted Zn2+-dependent endopeptidase,
           insulinase superfamily [Posttranslational modification,
           protein turnover, chaperones].
          Length = 1022

 Score = 48.5 bits (115), Expect = 3e-06
 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 23/188 (12%)

Query: 37  ERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVG-GDINAYTSLEHTSYHAWVLKEH- 94
           E   + G+ H LEH++F G+ K   K +++ I      D NA+T  +HT+Y         
Sbjct: 51  EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDG 110

Query: 95  ----VPLALE-IIGDMLSNSSF-------NPSDIERERNVVLEEIGMSEDDSWDFLDARF 142
               +P+ ++ I+  ML++ +F            +    VV  E+   E +    +D + 
Sbjct: 111 FLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDA--GVVYSEMQDHESEMESIMDRKT 168

Query: 143 SEMVWKDQIIGRPIL----GKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCV 198
            E+++              G+ + +   T EKI  +  + Y    M V+  G VDH+  +
Sbjct: 169 KEVIYP---PFSGYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLL 225

Query: 199 SQVESYFN 206
             + +  N
Sbjct: 226 EIMNNVEN 233


>gnl|CDD|29802 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding
           domain, long version found predominantly in eukaryotes
           and archaea. ProRS belongs to class II aminoacyl-tRNA
           synthetases (aaRS). This alignment contains the
           anticodon binding domain, which is responsible for
           specificity in tRNA-binding, so that the activated amino
           acid is transferred to a ribose 3' OH group of the
           appropriate tRNA only, and an additional C-terminal
           zinc-binding domain specific to this subfamily of
           aaRSs..
          Length = 202

 Score = 31.4 bits (71), Expect = 0.48
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%)

Query: 294 NGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRA 353
              + I      E      + +VE V  LL+ I++   ++      A  I      +  A
Sbjct: 81  KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYERALEFRDATRIVDTWEEFKEA 140

Query: 354 LEISKQVM--FCGSILCSEKIIDTISA 378
           L     V+  +CG   C E+I +  +A
Sbjct: 141 LNEKGIVLAPWCGEEECEEEIKEETAA 167


>gnl|CDD|33030 COG3217, COG3217, Uncharacterized Fe-S protein [General function
           prediction only].
          Length = 270

 Score = 29.5 bits (66), Expect = 1.7
 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 3/70 (4%)

Query: 109 SSFNPSDIERERNVVLEEIGMSEDDSW--DFLDARFSEMVWKDQIIGRPILGKPETISSF 166
           +    + +E   +    +      + W   FL  R   + W      R +   P    +F
Sbjct: 81  ADAQRAPVEVWGDHFTADAAGDAANDWLSGFL-GRAVSLRWDGAGFARRVKAGPAVPVTF 139

Query: 167 TPEKIISFVS 176
                I   +
Sbjct: 140 ADGYPILLFN 149


>gnl|CDD|147160 pfam04858, TH1, TH1 protein.  TH1 is a highly conserved but
           uncharacterized metazoan protein. No homologue has been
           identified in Caenorhabditis elegans. TH1 binds
           specifically to A-Raf kinase.
          Length = 582

 Score = 27.9 bits (62), Expect = 5.4
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 56  TTKRTAKEIVEEIEKVGGDINAYT-SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPS 114
              R ++EI E   K+ G     T +L  ++          P A   + DMLS  + NP+
Sbjct: 251 AAARLSQEIEEAAAKLHGAATVITLALATSAVD--------PQACYALADMLSRGALNPA 302

Query: 115 DI 116
           DI
Sbjct: 303 DI 304


>gnl|CDD|34229 COG4591, LolE, ABC-type transport system, involved in lipoprotein
           release, permease component [Cell envelope biogenesis,
           outer membrane].
          Length = 408

 Score = 27.9 bits (62), Expect = 5.7
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 293 DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLI-------KS 345
           D  + YI    A+ N+  L   +V  ++  L++    E  K   +I            + 
Sbjct: 198 DESLAYIPLEDAQ-NLFNLPKGVVTGIRLKLKDPFNAEELKRKLEIELLPQGLKAKDWRE 256

Query: 346 QERSYLRALEISKQVMF 362
           Q   +  AL + K +MF
Sbjct: 257 QNGEFFSALRLEKTIMF 273


>gnl|CDD|30097 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
           might play a role in cell shape remodeling. This
           catalytic (head) domain has ATPase activity and belongs
           to the larger group of P-loop NTPases. Kinesins are
           microtubule-dependent molecular motors that play
           important roles in intracellular transport and in cell
           division. In most kinesins, the motor domain is found at
           the N-terminus (N-type). N-type kinesins are (+)
           end-directed motors, i.e. they transport cargo towards
           the (+) end of the microtubule. Kinesin motor domains
           hydrolyze ATP at a rate of about 80 per second, and move
           along the microtubule at a speed of about 6400 Angstroms
           per second. To achieve that, kinesin head groups work in
           pairs. Upon replacing ADP with ATP, a kinesin motor
           domain increases its affinity for microtubule binding
           and locks in place. Also, the neck linker binds to the
           motor domain, which repositions the other head domain
           through the coiled-coil domain close to a second tubulin
           dimer, about 80 Angstroms along the microtubule.
           Meanwhile, ATP hydrolysis takes place, and when the
           second head domain binds to the microtubule, the first
           domain again replaces ADP with ATP, triggering a
           conformational change that pulls the first domain
           forward..
          Length = 334

 Score = 27.6 bits (61), Expect = 6.6
 Identities = 13/69 (18%), Positives = 28/69 (40%)

Query: 264 DGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLL 323
           DG +  +F   +   G  ++++   E++ D G++  A       +    +    V  S L
Sbjct: 78  DGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYL 137

Query: 324 ENIEQREID 332
           E   ++  D
Sbjct: 138 EIYNEQLYD 146


>gnl|CDD|35926 KOG0707, KOG0707, KOG0707, Guanylate kinase [Nucleotide transport
           and metabolism].
          Length = 231

 Score = 27.6 bits (61), Expect = 6.7
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 34  SRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVG 72
           +  E         F+E   F G    T+   V+ +   G
Sbjct: 90  TTEEFLSMIKNNEFIEFATFSGNKYGTSIAAVQRLMLSG 128


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0647    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,979,036
Number of extensions: 266789
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 710
Number of HSP's successfully gapped: 25
Length of query: 424
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,189,273
Effective search space: 1374081544
Effective search space used: 1374081544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)