RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >gnl|CDD|30957 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]. Length = 438 Score = 297 bits (760), Expect = 5e-81 Identities = 146/416 (35%), Positives = 231/416 (55%), Gaps = 13/416 (3%) Query: 1 MNLRISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR 59 L++ +G+ VIT P + + V ++AGSR E + G+AHFLEHM FKGTT Sbjct: 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGL 74 Query: 60 TAKEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERE 119 + E+ E EK+GG +NA+TS ++T Y+ VL +++ AL+++ D+L N +F+ ++ERE Sbjct: 75 PSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVERE 134 Query: 120 RNVVLEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNY 179 + V+LEEI M +DD D R E ++ + +GRPILG E+I + T E + F + Y Sbjct: 135 KGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWY 194 Query: 180 TADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGE------YIQKRDL 233 D M +V VG VD E V +E YF A + P +G E ++ DL Sbjct: 195 QPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 Query: 234 AEEHMMLGFNGCAYQSRDFYLTNILASILGDGM-SSRLFQEVREKRGLCYSISAHHENFS 292 + + LG+ G Y S D Y +L + L G SSRLFQE+REKRGL YS+S+ + S Sbjct: 255 EQAWLALGYPGPDYDSPDDYAALLLLNGLLGGGFSSRLFQELREKRGLAYSVSSFSDFLS 314 Query: 293 DNGVLYIASATAKENIMALTSSIVEVVQSLLEN----IEQREIDKECAKIHAKLIKSQER 348 D+G+ I + TA EN + E++++L + + E+D + L+ S + Sbjct: 315 DSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDS 374 Query: 349 SYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGP 403 A + + ++ GS++ E++++ I A+T ED+ VAKK+ + T+ +LGP Sbjct: 375 PSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGP 430 >gnl|CDD|36178 KOG0960, KOG0960, KOG0960, Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]. Length = 467 Score = 215 bits (549), Expect = 2e-56 Identities = 122/415 (29%), Positives = 213/415 (51%), Gaps = 16/415 (3%) Query: 4 RISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE 63 ++ +G+ V TE +A V V I AGSR E ++ +G AHFLEH+ FKGT R+ Sbjct: 35 EVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAA 94 Query: 64 IVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVV 123 + EIE +G +NAYTS E T Y+A L + VP A++I+ D+L NS S IERER+V+ Sbjct: 95 LELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVI 154 Query: 124 LEEIGMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADR 183 L E+ + + + + ++ +GR ILG E I S + + +++ +Y A R Sbjct: 155 LREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHYKASR 214 Query: 184 MYVVCVGAVDHEFCVSQVESYFNVCSVAKIKES---MKPAVYVGGEY-IQKRDLAEEHMM 239 M + G V HE V E YF S + + + PA + G E ++ DL H+ Sbjct: 215 MVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLAHIA 274 Query: 240 LGFNGCAYQSRDFYLTNILASILGD---------GMSSRLFQEVREKRGLCYSISAHHEN 290 + G ++ D++ + +I+G+ +SSRL Q++++ + LC+S + + + Sbjct: 275 IAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQDQ-LCHSFQSFNTS 333 Query: 291 FSDNGVLYIASATAKEN-IMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERS 349 + D G+ I T I L S+++ L ++ + E+++ ++ L+ S + + Sbjct: 334 YKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGT 393 Query: 350 YLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVA-KKIFSSTPTLAILGP 403 A +I +Q++ G + ++ I A+T +D+ VA K I+ +A +GP Sbjct: 394 TPIAEDIGRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGP 448 >gnl|CDD|37278 KOG2067, KOG2067, KOG2067, Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]. Length = 472 Score = 192 bits (489), Expect = 2e-49 Identities = 113/437 (25%), Positives = 201/437 (45%), Gaps = 33/437 (7%) Query: 2 NLRISKTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTA 61 N +++ +G+ V +E P V + I +GSR E + G++HFLE + FK T + ++ Sbjct: 24 NTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSS 83 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 KEI+ E+EK+GG+ + +S E Y A + V +E++ D + N F ++E R Sbjct: 84 KEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARR 143 Query: 122 VVLEEIGMSEDDSWDFLDARFSEMV----WKDQIIGRPILGKPETISSFTPEKIISFVSR 177 V EI ++ W + +EM+ + +G P+L E I E + ++ Sbjct: 144 AVKYEI----EELWMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKY 199 Query: 178 NYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKP-AVYVGGEYIQKRDLAE- 235 YT +RM + VG V+HE V E K+ + A Y GGE D + Sbjct: 200 FYTPERMVLAGVG-VEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQV 258 Query: 236 ------EHMMLGFNGCAYQSRDFYLTNILASILG-----------DGMSSRLFQEVREKR 278 H++LGF GC++ DF +L ++G GM SRL+ V + Sbjct: 259 TGGPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRY 318 Query: 279 GLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKI 338 YS +A + ++SD G+ I ++ + I + + ++ + Q E+++ ++ Sbjct: 319 HWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQL 378 Query: 339 HAKLIKSQERSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTL 398 + L+ + E + ++ +QV+ G ++ I I +T DI VA K+ + P++ Sbjct: 379 KSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLTGKPSV 438 Query: 399 AILG-----PPMDHVPT 410 A G P DH+ Sbjct: 439 AAFGDGTGLPTYDHIGN 455 >gnl|CDD|144319 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16). Length = 149 Score = 132 bits (333), Expect = 2e-31 Identities = 58/139 (41%), Positives = 87/139 (62%) Query: 20 PIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYT 79 P D++ V + + AGSR E + +G+AHFLEHM FKGT K + E+ EE+EK+GG +NAYT Sbjct: 9 PADTSAVGLWVDAGSRYEPDDNNGLAHFLEHMAFKGTKKYPSNELEEELEKLGGSLNAYT 68 Query: 80 SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGMSEDDSWDFLD 139 S EHT Y+ VL + +P A++ + D N F+PS++ERER VV E+ + + + L Sbjct: 69 SREHTVYYVEVLNDDLPKAVDRLADFFLNPLFSPSEVERERLVVEYEVEAVDAEPQEVLL 128 Query: 140 ARFSEMVWKDQIIGRPILG 158 ++ +GR +LG Sbjct: 129 DNLHAAAYRGTPLGRSLLG 147 >gnl|CDD|37794 KOG2583, KOG2583, KOG2583, Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]. Length = 429 Score = 118 bits (298), Expect = 2e-27 Identities = 93/416 (22%), Positives = 181/416 (43%), Gaps = 21/416 (5%) Query: 7 KTSSGITVITEVMPIDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVE 66 K +G+TV + P + + + RAGSR E ++ G++H L + + + T +R+A +IV Sbjct: 27 KLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVR 86 Query: 67 EIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEE 126 E E++GG +++ + E L++ + L ++GD+L +F P ++E +VVL Sbjct: 87 ESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELE---DVVLAT 143 Query: 127 I--GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRM 184 I ++ + + +++ +G + + S + ++ F ++++ Sbjct: 144 IDADLAYQTPYTIAIEQLHAAAFRNG-LGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNA 202 Query: 185 YVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNG 244 +V V VDH+ + Y + +K + PA Y GGE + H+ + G Sbjct: 203 VLVGVN-VDHDDLKQFADEYAPIRDGLPLKPA--PAKYSGGEARKDARGNRVHVAVAGEG 259 Query: 245 CAYQSRDFYLTN-ILASILGDGMSSRLFQEVREKRGLC-----YSISAHHENFSDNGVLY 298 A + +L + LG+ + + + S SA + +SD+G+ Sbjct: 260 AAAGNLKVLAAQAVLLAALGNSAPVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFG 319 Query: 299 IASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRALEISK 358 + + + SS V+ ++S L +ID K K +K+ S + ALE++ Sbjct: 320 VYVSAQGSQAGKVVSSEVKKLKSAL----VSDIDNAKVKAAIKALKASYLSSVEALELAT 375 Query: 359 QVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPPMDHVPTTSEL 414 + + I I +T D+ AKK S +LA G + +VP EL Sbjct: 376 GS-QANLVSEPDAFIQQIDKVTASDVQKAAKKFLSGKLSLAAYG-NLSNVPYLDEL 429 >gnl|CDD|147402 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain. Peptidase M16 consists of two structurally related domains. One is the active peptidase, whereas the other is inactive. The two domains hold the substrate like a clamp. Length = 182 Score = 114 bits (288), Expect = 3e-26 Identities = 57/177 (32%), Positives = 92/177 (51%), Gaps = 8/177 (4%) Query: 165 SFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKE-----SMKP 219 S T E + F ++Y+ D M +V VG VD + ++ E YF + K ++P Sbjct: 1 SLTREDLKDFYKKHYSPDNMVLVVVGDVDLDELLALAEKYFGDLPASPPKPKPREPPLEP 60 Query: 220 AVYVGGEYI-QKRDLAEEHMMLGFNGCAY-QSRDFYLTNILASILGDGMSSRLFQEVREK 277 G E + +D+ + + L F G D ++LA +LG G SSRLFQE+REK Sbjct: 61 EELTGKEVVVPDKDVPQAKLALAFPGPPLGNDPDSAALDVLAELLGGGASSRLFQELREK 120 Query: 278 RGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLLEN-IEQREIDK 333 GL YS+SA +++SD G+ I + EN+ + I+E ++ L E I + E+++ Sbjct: 121 EGLAYSVSAFLDSYSDTGLFGIYADLDPENLDEVIELILEELKKLAEEGITEEELER 177 >gnl|CDD|36177 KOG0959, KOG0959, KOG0959, N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 974 Score = 99.0 bits (246), Expect = 2e-21 Identities = 78/368 (21%), Positives = 142/368 (38%), Gaps = 30/368 (8%) Query: 4 RISKTSSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRT-A 61 R + ++G+ + P D + ++++ GS ++ ++ G+AHF EHMLF G+ K Sbjct: 29 RGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDE 88 Query: 62 KEIVEEIEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERN 121 E + + K GG NAYT EHT+Y+ V +H+ AL+ S+ FN S ERE Sbjct: 89 NEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVG 148 Query: 122 VVLEEI-GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISS-----FTPEKIISFV 175 V E D W D + + G +T+ ++++ F Sbjct: 149 AVDSEHEKNLNSDGW-RFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFY 207 Query: 176 SRNYTADRMYVVCVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKR---- 231 Y+++ M +V VG + S V F+ S K + P E ++K Sbjct: 208 KNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVRVV 267 Query: 232 ---DLAEEHMMLGFNGCAYQSRDFYLTN---ILASILGDGMSSRLFQEVREKRGLCYSIS 285 D + Y + L+ ++G L ++ + G S+ Sbjct: 268 PIKDGRSLMISWPVPP----LNHHYKSKPLRYLSHLIGHEGPGSLLSYLK-RLGWATSLE 322 Query: 286 AHHENFS-----DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHA 340 A F+ N + + E++ + + ++ L ++ I KE I Sbjct: 323 AGIPEFASGYSFFNVSIDLTDE-GLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISE 381 Query: 341 KLIKSQER 348 + Q++ Sbjct: 382 VKFRFQDK 389 >gnl|CDD|31228 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]. Length = 937 Score = 94.6 bits (235), Expect = 5e-20 Identities = 73/327 (22%), Positives = 129/327 (39%), Gaps = 20/327 (6%) Query: 22 DSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKR-TAKEIVEEIEKVGGDINAYTS 80 D + + + GS ++ +E G+AHFLEHMLF G+ K E + K GG NA T+ Sbjct: 44 DKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSHNASTA 103 Query: 81 LEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGM-SEDDSWDFLD 139 E T+++ V + + AL+ D FN ++RERN V E M D W Sbjct: 104 GERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRM-Y 162 Query: 140 ARFSEMVWKDQIIGRPILGKPETISSF----TPEKIISFVSRNYTADRMYVVCVGAVDHE 195 + + + G ET+S +++ F ++Y+A+ M +V G + Sbjct: 163 QVQALTANPGHPLSKFSTGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLD 222 Query: 196 FCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAE-----EHMMLGF----NGCA 246 F K P V E K + + F N Sbjct: 223 ELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAK 282 Query: 247 YQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKE 306 ++S+ L+ ++G+ L ++++ GL +SA + S N ++ S + Sbjct: 283 FRSKPD---EYLSHLIGNESPGSLLAWLKKQ-GLITELSAGLDPISGNYGVFAISYELTD 338 Query: 307 NIMALTSSIVEVVQSLLENIEQREIDK 333 +A ++ + L + ++ I K Sbjct: 339 KGLAHYDRVIALTFQYLNLLREKGIPK 365 >gnl|CDD|31229 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]. Length = 978 Score = 49.5 bits (118), Expect = 2e-06 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 57/355 (16%) Query: 35 RNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEK--VGGDINAYTSLEHTSYHAWVLK 92 + E + G+AH LEH + G+ K K+ ++ K + +NA+T + T Y Sbjct: 50 KTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVY------ 103 Query: 93 EHVPLALEIIGDMLS------NSSFNPS-------------DIERERN-----VVLEEIG 128 P + D + ++ F+P + + E N VV E+ Sbjct: 104 ---PASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMK 160 Query: 129 MSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVVC 188 + L + ++ G G P+ I T E+ +F ++Y + Sbjct: 161 GAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFV 220 Query: 189 VGAVDHEFCVSQV-ESYFNVCSVAKIKESMKP------AVYVGGEYIQKRDLAEEH---M 238 G + E + + E ++ + EY D +E + Sbjct: 221 YGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPRRKVLEYPISFDEEDEDQGLL 280 Query: 239 MLGFNGCAYQSRDFYLT---NILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNG 295 L + G + D + +L IL D +S L Q + E GL + A D+ Sbjct: 281 SLSWLGGSAS--DAEDSLALEVLEEILLDSAASPLTQALIES-GLGF---ADVSGSYDSD 334 Query: 296 VLYIASATAKENIMALTSSIVE-VVQSLLENIEQREIDKEC--AKIHAKLIKSQE 347 + + + + + ++ +V S L+ + + IDK+ A +H +E Sbjct: 335 LKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNGIDKKLIEAILHQLEFSLKE 389 Score = 37.9 bits (88), Expect = 0.006 Identities = 71/390 (18%), Positives = 141/390 (36%), Gaps = 53/390 (13%) Query: 47 FLEHMLFKGTTKRTAKEIVEEIEKVGGDINAYTSL-----------EHTSYHAWVLKEHV 95 F + GT + KE++ +IE+ G I+ S+ S L+ V Sbjct: 571 FAFALTNLGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKV 630 Query: 96 PLALEIIGDMLSNSSFNPSDIERERNVV---LEEIGMSEDDSWDFL-----DARFSEM-V 146 E+I ++L+N+ F D ER + ++ L ++ S +S + ++R S Sbjct: 631 EKLFELIREILANTDF--HDRERLKELLEQYLSDLTSSVRNSGHSIASSLANSRLSSAGA 688 Query: 147 WKDQIIGRPILGKPETISSFTPEKIISFVS------RNY--TADRMYVVCVGAVDHEFCV 198 K+ + G + +SS E ++ R + + + +G +D + Sbjct: 689 LKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIGDIDKILDL 748 Query: 199 SQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAE--------EHMMLGFN--GCAYQ 248 +E+ + P L+E + L F+ G Y Sbjct: 749 --LENPLLKFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPYT 806 Query: 249 SRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENI 308 D+ +L+ LG G L+ ++REK G Y SA + + GV AS + Sbjct: 807 HPDYAALQVLSEYLGSGY---LWNKIREK-GGAYGASASIDA--NRGVFSFASYRDPNIL 860 Query: 309 MALTSSIVEVVQSLLE-NIEQREIDKECAKIHA-KLIKSQERSYLRALEISKQVMFCGSI 366 + V+ L N ++R++++ A + + + E + + + + Sbjct: 861 KTY-KVFRKSVKDLASGNFDERDLEE--AILGIISTLDTPESPASEGSKSFYRDLSGLTD 917 Query: 367 LCSEKIIDTISAITCEDIVGVAKKIFSSTP 396 + + + +T EDI V K + Sbjct: 918 EERQAFRERLLDVTKEDIKEVMDKYLLNFS 947 >gnl|CDD|36179 KOG0961, KOG0961, KOG0961, Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]. Length = 1022 Score = 48.5 bits (115), Expect = 3e-06 Identities = 42/188 (22%), Positives = 79/188 (42%), Gaps = 23/188 (12%) Query: 37 ERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVG-GDINAYTSLEHTSYHAWVLKEH- 94 E + G+ H LEH++F G+ K K +++ I D NA+T +HT+Y Sbjct: 51 EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDG 110 Query: 95 ----VPLALE-IIGDMLSNSSF-------NPSDIERERNVVLEEIGMSEDDSWDFLDARF 142 +P+ ++ I+ ML++ +F + VV E+ E + +D + Sbjct: 111 FLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDA--GVVYSEMQDHESEMESIMDRKT 168 Query: 143 SEMVWKDQIIGRPIL----GKPETISSFTPEKIISFVSRNYTADRMYVVCVGAVDHEFCV 198 E+++ G+ + + T EKI + + Y M V+ G VDH+ + Sbjct: 169 KEVIYP---PFSGYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLL 225 Query: 199 SQVESYFN 206 + + N Sbjct: 226 EIMNNVEN 233 >gnl|CDD|29802 cd00862, ProRS_anticodon_zinc, ProRS Prolyl-anticodon binding domain, long version found predominantly in eukaryotes and archaea. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only, and an additional C-terminal zinc-binding domain specific to this subfamily of aaRSs.. Length = 202 Score = 31.4 bits (71), Expect = 0.48 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 2/87 (2%) Query: 294 NGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQERSYLRA 353 + I E + +VE V LL+ I++ ++ A I + A Sbjct: 81 KNTVVIVRRDTGEKKTVPLAELVEKVPELLDEIQEDLYERALEFRDATRIVDTWEEFKEA 140 Query: 354 LEISKQVM--FCGSILCSEKIIDTISA 378 L V+ +CG C E+I + +A Sbjct: 141 LNEKGIVLAPWCGEEECEEEIKEETAA 167 >gnl|CDD|33030 COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only]. Length = 270 Score = 29.5 bits (66), Expect = 1.7 Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 3/70 (4%) Query: 109 SSFNPSDIERERNVVLEEIGMSEDDSW--DFLDARFSEMVWKDQIIGRPILGKPETISSF 166 + + +E + + + W FL R + W R + P +F Sbjct: 81 ADAQRAPVEVWGDHFTADAAGDAANDWLSGFL-GRAVSLRWDGAGFARRVKAGPAVPVTF 139 Query: 167 TPEKIISFVS 176 I + Sbjct: 140 ADGYPILLFN 149 >gnl|CDD|147160 pfam04858, TH1, TH1 protein. TH1 is a highly conserved but uncharacterized metazoan protein. No homologue has been identified in Caenorhabditis elegans. TH1 binds specifically to A-Raf kinase. Length = 582 Score = 27.9 bits (62), Expect = 5.4 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 9/62 (14%) Query: 56 TTKRTAKEIVEEIEKVGGDINAYT-SLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPS 114 R ++EI E K+ G T +L ++ P A + DMLS + NP+ Sbjct: 251 AAARLSQEIEEAAAKLHGAATVITLALATSAVD--------PQACYALADMLSRGALNPA 302 Query: 115 DI 116 DI Sbjct: 303 DI 304 >gnl|CDD|34229 COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]. Length = 408 Score = 27.9 bits (62), Expect = 5.7 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%) Query: 293 DNGVLYIASATAKENIMALTSSIVEVVQSLLENIEQREIDKECAKIHAKLI-------KS 345 D + YI A+ N+ L +V ++ L++ E K +I + Sbjct: 198 DESLAYIPLEDAQ-NLFNLPKGVVTGIRLKLKDPFNAEELKRKLEIELLPQGLKAKDWRE 256 Query: 346 QERSYLRALEISKQVMF 362 Q + AL + K +MF Sbjct: 257 QNGEFFSALRLEKTIMF 273 >gnl|CDD|30097 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.. Length = 334 Score = 27.6 bits (61), Expect = 6.6 Identities = 13/69 (18%), Positives = 28/69 (40%) Query: 264 DGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQSLL 323 DG + +F + G ++++ E++ D G++ A + + V S L Sbjct: 78 DGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYL 137 Query: 324 ENIEQREID 332 E ++ D Sbjct: 138 EIYNEQLYD 146 >gnl|CDD|35926 KOG0707, KOG0707, KOG0707, Guanylate kinase [Nucleotide transport and metabolism]. Length = 231 Score = 27.6 bits (61), Expect = 6.7 Identities = 8/39 (20%), Positives = 13/39 (33%) Query: 34 SRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEEIEKVG 72 + E F+E F G T+ V+ + G Sbjct: 90 TTEEFLSMIKNNEFIEFATFSGNKYGTSIAAVQRLMLSG 128 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.133 0.379 Gapped Lambda K H 0.267 0.0647 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 4,979,036 Number of extensions: 266789 Number of successful extensions: 726 Number of sequences better than 10.0: 1 Number of HSP's gapped: 710 Number of HSP's successfully gapped: 25 Length of query: 424 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 328 Effective length of database: 4,189,273 Effective search space: 1374081544 Effective search space used: 1374081544 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.7 bits)