RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase [Candidatus Liberibacter asiaticus str. psy62] (424 letters) >gnl|CDD|162709 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Length = 696 Score = 61.0 bits (148), Expect = 5e-10 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%) Query: 30 IRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE-IVEEIEKVGGDINAYTSLEHTSYHA 88 + AGS +E G+AHFLEH+LF G + + ++ +++ GG +NA T T++ Sbjct: 28 VAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFF 87 Query: 89 WVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEE 126 + + L + DML+ D +RER V+ E Sbjct: 88 ELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAE 125 >gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional. Length = 961 Score = 47.3 bits (113), Expect = 7e-06 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%) Query: 33 GSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEE-IEKVGGDINAYTSLEHTSYHAWVL 91 GS + + G+AH+LEHM+ G+ K + + E ++K GG NA T+ T+++ V Sbjct: 75 GSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVE 134 Query: 92 KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGM 129 + +P A++ + D ++ +P + +RERN V E+ M Sbjct: 135 NDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTM 172 >gnl|CDD|173622 PTZ00432, PTZ00432, falcilysin; Provisional. Length = 1119 Score = 32.5 bits (74), Expect = 0.23 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%) Query: 43 GMAHFLEHMLFKGTTKRTAKEIVEEIEKVG--GDINAYTSLEHTSYHAWVLKEHVPLALE 100 G+ H LEH + G+ K K+ + + G +NAYT + TSY E Sbjct: 131 GIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEK---DFY 187 Query: 101 IIGDMLSNSSFNPSDIERER 120 D+ +S F P+ +E + Sbjct: 188 NTADVYMDSVFQPNILEDKD 207 Score = 29.0 bits (65), Expect = 2.5 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 16/76 (21%) Query: 55 GTTKRTAKEIVEEIEKVGGDINAYTSLEHTSYH----------------AWVLKEHVPLA 98 GT K +++E + EK G ++A T+ + + A VLK V Sbjct: 712 GTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRAKVLKHKVNEM 771 Query: 99 LEIIGDMLSNSSFNPS 114 ++I+ + L ++ F+ S Sbjct: 772 VDIVLEALKDADFSNS 787 >gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain appears in eukaryotes as well as bacteria and tends to be found near the C-terminus of the metalloprotease M16C (pfam05193). Length = 248 Score = 31.8 bits (73), Expect = 0.31 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 13/87 (14%) Query: 51 MLFKGTTKRTAKEIVEEI-EKVGG---------DINAYTSLE-HTSYHAWVLKEHVPLAL 99 + GT + +E+ EEI GG + + E L VP Sbjct: 118 LTKLGTENYSYRELEEEILLHTGGISFSVSVSSNPDDTDKYEPSFVISGKALNSKVPKLF 177 Query: 100 EIIGDMLSNSSFNPSDIERERNVVLEE 126 E+I ++L+ + F D ER + ++ E Sbjct: 178 ELISEILNETDF--DDEERLKELIRES 202 >gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein. Length = 407 Score = 31.1 bits (70), Expect = 0.57 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 16/95 (16%) Query: 63 EIVEEIEKVGGDINAYTSLEHTSYHAWV------LKEHVPLALEIIGDMLSNSSFNPSD- 115 + VEEI I A + +SY W +KE PL+L++ + F D Sbjct: 278 DTVEEI------IEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQ 331 Query: 116 -IERERNVVLEEIGMSEDDSWDFLDARFSEMVWKD 149 + RE + L G+S+ S DF + + +V KD Sbjct: 332 CLAREYRISL--CGVSKWVSGDFCEGVRARLVDKD 364 >gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed. Length = 1034 Score = 30.4 bits (69), Expect = 0.88 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%) Query: 5 ISKTSSGITVITE-VMPIDSAFV-----KVNI--RAGSRNERQEEHGM-AHFLEHMLFKG 55 I + + GI + E VM I F K ++ RA S+ E M FL+ L G Sbjct: 600 ILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKNASEMQKMEEDFLQGALELG 659 Query: 56 TTKRTAKEIVEEIEKVGG 73 ++ A+E+ + +EK G Sbjct: 660 HSEEKARELFDRMEKFAG 677 >gnl|CDD|181012 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed. Length = 372 Score = 29.5 bits (67), Expect = 1.7 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 90 VLKEHVPLALEIIGDMLSNSSFNPSDIER 118 V KE P+ E I + L+ + P+D++R Sbjct: 265 VFKEVCPMVAEHIVEHLAENGLTPADVKR 293 >gnl|CDD|151603 pfam11161, DUF2944, Protein of unknown function (DUF2946). This family of proteins with unknown function appear to be restricted to Proteobacteria. Length = 178 Score = 28.5 bits (64), Expect = 3.0 Identities = 6/14 (42%), Positives = 9/14 (64%) Query: 169 EKIISFVSRNYTAD 182 +I F++RNY D Sbjct: 50 PALIEFIARNYECD 63 >gnl|CDD|181986 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B''; Validated. Length = 494 Score = 27.6 bits (62), Expect = 5.6 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%) Query: 306 ENIMALTSSIVEVVQSLLENIEQREID-KECA--KIHAKLIKSQERSY 350 E I+ S E+V+ +LEN+E+ E+D +E A I ++ Q + Y Sbjct: 232 EEIVEAVSDDPEIVKFMLENLEEAEVDTQEEALEYIGKRVAPGQTKEY 279 >gnl|CDD|178578 PLN03000, PLN03000, amine oxidase. Length = 881 Score = 27.7 bits (61), Expect = 5.8 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Query: 265 GMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQS--- 321 G + RL Q + E + Y + + NGV IA E M L + + V+++ Sbjct: 378 GGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLKNGSI 437 Query: 322 -LLENIEQREID 332 + + QR++D Sbjct: 438 KFVPELPQRKLD 449 >gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional. Length = 443 Score = 27.3 bits (60), Expect = 9.0 Identities = 11/35 (31%), Positives = 18/35 (51%) Query: 271 FQEVREKRGLCYSISAHHENFSDNGVLYIASATAK 305 F V+ + + I+A H F+DNG+ +S K Sbjct: 85 FMTVKHRAAAGFVITASHNKFTDNGIKLFSSNGFK 119 >gnl|CDD|183194 PRK11556, PRK11556, multidrug efflux system subunit MdtA; Provisional. Length = 415 Score = 27.1 bits (60), Expect = 9.3 Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 6 SKTSSGITVITEVMPIDSAF 25 S ++GI VIT+ PID F Sbjct: 219 SGDTTGIVVITQTHPIDLVF 238 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.133 0.379 Gapped Lambda K H 0.267 0.0816 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,809,326 Number of extensions: 442617 Number of successful extensions: 941 Number of sequences better than 10.0: 1 Number of HSP's gapped: 938 Number of HSP's successfully gapped: 19 Length of query: 424 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 328 Effective length of database: 3,920,105 Effective search space: 1285794440 Effective search space used: 1285794440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.0 bits)