RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780464|ref|YP_003064877.1| M16 family peptidase
[Candidatus Liberibacter asiaticus str. psy62]
         (424 letters)



>gnl|CDD|162709 TIGR02110, PQQ_syn_pqqF, coenzyme PQQ biosynthesis probable
           peptidase PqqF.  In a subset of species that make
           coenzyme PQQ (pyrrolo-quinoline-quinone), this probable
           peptidase is found in the PQQ biosynthesis region and is
           thought to act as a protease on PqqA (TIGR02107), a
           probable peptide precursor of the coenzyme. PQQ is
           required for some glucose dehydrogenases and alcohol
           dehydrogenases.
          Length = 696

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 30  IRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKE-IVEEIEKVGGDINAYTSLEHTSYHA 88
           + AGS +E     G+AHFLEH+LF G  +    + ++  +++ GG +NA T    T++  
Sbjct: 28  VAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFF 87

Query: 89  WVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEE 126
            +    +   L  + DML+       D +RER V+  E
Sbjct: 88  ELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAE 125


>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional.
          Length = 961

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 31/98 (31%), Positives = 56/98 (57%), Gaps = 1/98 (1%)

Query: 33  GSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEE-IEKVGGDINAYTSLEHTSYHAWVL 91
           GS  +   + G+AH+LEHM+  G+ K    + + E ++K GG  NA T+   T+++  V 
Sbjct: 75  GSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVE 134

Query: 92  KEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEIGM 129
            + +P A++ + D ++    +P + +RERN V  E+ M
Sbjct: 135 NDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTM 172


>gnl|CDD|173622 PTZ00432, PTZ00432, falcilysin; Provisional.
          Length = 1119

 Score = 32.5 bits (74), Expect = 0.23
 Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 5/80 (6%)

Query: 43  GMAHFLEHMLFKGTTKRTAKEIVEEIEKVG--GDINAYTSLEHTSYHAWVLKEHVPLALE 100
           G+ H LEH +  G+ K   K+    + + G    +NAYT  + TSY      E       
Sbjct: 131 GIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEK---DFY 187

Query: 101 IIGDMLSNSSFNPSDIERER 120
              D+  +S F P+ +E + 
Sbjct: 188 NTADVYMDSVFQPNILEDKD 207



 Score = 29.0 bits (65), Expect = 2.5
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 55  GTTKRTAKEIVEEIEKVGGDINAYTSLEHTSYH----------------AWVLKEHVPLA 98
           GT K +++E   + EK  G ++A T+    + +                A VLK  V   
Sbjct: 712 GTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRAKVLKHKVNEM 771

Query: 99  LEIIGDMLSNSSFNPS 114
           ++I+ + L ++ F+ S
Sbjct: 772 VDIVLEALKDADFSNS 787


>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated.  This domain
           appears in eukaryotes as well as bacteria and tends to
           be found near the C-terminus of the metalloprotease M16C
           (pfam05193).
          Length = 248

 Score = 31.8 bits (73), Expect = 0.31
 Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 13/87 (14%)

Query: 51  MLFKGTTKRTAKEIVEEI-EKVGG---------DINAYTSLE-HTSYHAWVLKEHVPLAL 99
           +   GT   + +E+ EEI    GG         + +     E         L   VP   
Sbjct: 118 LTKLGTENYSYRELEEEILLHTGGISFSVSVSSNPDDTDKYEPSFVISGKALNSKVPKLF 177

Query: 100 EIIGDMLSNSSFNPSDIERERNVVLEE 126
           E+I ++L+ + F   D ER + ++ E 
Sbjct: 178 ELISEILNETDF--DDEERLKELIRES 202


>gnl|CDD|178443 PLN02851, PLN02851, 3-hydroxyisobutyryl-CoA hydrolase-like protein.
          Length = 407

 Score = 31.1 bits (70), Expect = 0.57
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 16/95 (16%)

Query: 63  EIVEEIEKVGGDINAYTSLEHTSYHAWV------LKEHVPLALEIIGDMLSNSSFNPSD- 115
           + VEEI      I A  +   +SY  W       +KE  PL+L++    +    F   D 
Sbjct: 278 DTVEEI------IEALENEAASSYDEWCKKALKKIKEASPLSLKVTLQSIREGRFQTLDQ 331

Query: 116 -IERERNVVLEEIGMSEDDSWDFLDARFSEMVWKD 149
            + RE  + L   G+S+  S DF +   + +V KD
Sbjct: 332 CLAREYRISL--CGVSKWVSGDFCEGVRARLVDKD 364


>gnl|CDD|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed.
          Length = 1034

 Score = 30.4 bits (69), Expect = 0.88
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 5   ISKTSSGITVITE-VMPIDSAFV-----KVNI--RAGSRNERQEEHGM-AHFLEHMLFKG 55
           I + + GI +  E VM I   F      K ++  RA S+    E   M   FL+  L  G
Sbjct: 600 ILEPTYGIMLYQEQVMQIAQVFAGFSLGKADLLRRAMSKKNASEMQKMEEDFLQGALELG 659

Query: 56  TTKRTAKEIVEEIEKVGG 73
            ++  A+E+ + +EK  G
Sbjct: 660 HSEEKARELFDRMEKFAG 677


>gnl|CDD|181012 PRK07515, PRK07515, 3-oxoacyl-(acyl carrier protein) synthase III;
           Reviewed.
          Length = 372

 Score = 29.5 bits (67), Expect = 1.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 90  VLKEHVPLALEIIGDMLSNSSFNPSDIER 118
           V KE  P+  E I + L+ +   P+D++R
Sbjct: 265 VFKEVCPMVAEHIVEHLAENGLTPADVKR 293


>gnl|CDD|151603 pfam11161, DUF2944, Protein of unknown function (DUF2946).  This
           family of proteins with unknown function appear to be
           restricted to Proteobacteria.
          Length = 178

 Score = 28.5 bits (64), Expect = 3.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 169 EKIISFVSRNYTAD 182
             +I F++RNY  D
Sbjct: 50  PALIEFIARNYECD 63


>gnl|CDD|181986 PRK09606, PRK09606, DNA-directed RNA polymerase subunit B'';
           Validated.
          Length = 494

 Score = 27.6 bits (62), Expect = 5.6
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 306 ENIMALTSSIVEVVQSLLENIEQREID-KECA--KIHAKLIKSQERSY 350
           E I+   S   E+V+ +LEN+E+ E+D +E A   I  ++   Q + Y
Sbjct: 232 EEIVEAVSDDPEIVKFMLENLEEAEVDTQEEALEYIGKRVAPGQTKEY 279


>gnl|CDD|178578 PLN03000, PLN03000, amine oxidase.
          Length = 881

 Score = 27.7 bits (61), Expect = 5.8
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 265 GMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKENIMALTSSIVEVVQS--- 321
           G + RL Q + E   + Y  +     +  NGV  IA     E  M L +  + V+++   
Sbjct: 378 GGNGRLVQALAENVPILYEKTVQTIRYGSNGVKVIAGNQVYEGDMVLCTVPLGVLKNGSI 437

Query: 322 -LLENIEQREID 332
             +  + QR++D
Sbjct: 438 KFVPELPQRKLD 449


>gnl|CDD|172796 PRK14320, glmM, phosphoglucosamine mutase; Provisional.
          Length = 443

 Score = 27.3 bits (60), Expect = 9.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 271 FQEVREKRGLCYSISAHHENFSDNGVLYIASATAK 305
           F  V+ +    + I+A H  F+DNG+   +S   K
Sbjct: 85  FMTVKHRAAAGFVITASHNKFTDNGIKLFSSNGFK 119


>gnl|CDD|183194 PRK11556, PRK11556, multidrug efflux system subunit MdtA;
           Provisional.
          Length = 415

 Score = 27.1 bits (60), Expect = 9.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 6   SKTSSGITVITEVMPIDSAF 25
           S  ++GI VIT+  PID  F
Sbjct: 219 SGDTTGIVVITQTHPIDLVF 238


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0816    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,809,326
Number of extensions: 442617
Number of successful extensions: 941
Number of sequences better than 10.0: 1
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 19
Length of query: 424
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 328
Effective length of database: 3,920,105
Effective search space: 1285794440
Effective search space used: 1285794440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.0 bits)