RPSBLAST alignment of GI: 254780464 and protein with PDBid: 3hdi

>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421
 Score =  278 bits (711), Expect = 2e-75
 Identities = 131/398 (32%), Positives = 225/398 (56%), Gaps = 3/398 (0%)

Query: 9   SSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEE 67
            +G+ +ITE M  + S  + + +  GSR E  EE+G++HFLEHM FKGT  R+A+EI E 
Sbjct: 8   DNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEF 67

Query: 68  IEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEI 127
            + +GG +NA+TS E+T Y+A VL +H   A++ + DM  +S+F   ++E+ER VV EEI
Sbjct: 68  FDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEI 127

Query: 128 GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVV 187
            M +D   D +    S   +    +G PILG  ET++SF    +  ++ R YT D + + 
Sbjct: 128 KMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVIS 187

Query: 188 CVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAY 247
             G V  E      E++  V       +  KP +++    ++K++  + H+ LG+ G   
Sbjct: 188 VAGNVHDELIDKIKETFSQVKPTTYNYQGEKP-MFLPNRIVRKKETEQAHLCLGYPGLPI 246

Query: 248 QSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKEN 307
             +D Y   +L ++LG  MSSRLFQ++REKRGLCYS+ ++H +F D+G+L I + T  + 
Sbjct: 247 GDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQ 306

Query: 308 IMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSI 366
           +  L  SI E   +L E  + ++E++    ++   L+ S E +  R     K  +     
Sbjct: 307 LDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKH 366

Query: 367 LCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPP 404
              +++I+ I+A+  +D+  +AK + S++P+++++   
Sbjct: 367 RSLDEMIEQINAVQKQDVSRLAKILLSASPSISLINAN 404