RPSBLAST alignment of GI: 254780464 and protein with PDBid: 3hdi
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421
Score = 278 bits (711), Expect = 2e-75
Identities = 131/398 (32%), Positives = 225/398 (56%), Gaps = 3/398 (0%)
Query: 9 SSGITVITEVMP-IDSAFVKVNIRAGSRNERQEEHGMAHFLEHMLFKGTTKRTAKEIVEE 67
+G+ +ITE M + S + + + GSR E EE+G++HFLEHM FKGT R+A+EI E
Sbjct: 8 DNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEF 67
Query: 68 IEKVGGDINAYTSLEHTSYHAWVLKEHVPLALEIIGDMLSNSSFNPSDIERERNVVLEEI 127
+ +GG +NA+TS E+T Y+A VL +H A++ + DM +S+F ++E+ER VV EEI
Sbjct: 68 FDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEI 127
Query: 128 GMSEDDSWDFLDARFSEMVWKDQIIGRPILGKPETISSFTPEKIISFVSRNYTADRMYVV 187
M +D D + S + +G PILG ET++SF + ++ R YT D + +
Sbjct: 128 KMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVIS 187
Query: 188 CVGAVDHEFCVSQVESYFNVCSVAKIKESMKPAVYVGGEYIQKRDLAEEHMMLGFNGCAY 247
G V E E++ V + KP +++ ++K++ + H+ LG+ G
Sbjct: 188 VAGNVHDELIDKIKETFSQVKPTTYNYQGEKP-MFLPNRIVRKKETEQAHLCLGYPGLPI 246
Query: 248 QSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHENFSDNGVLYIASATAKEN 307
+D Y +L ++LG MSSRLFQ++REKRGLCYS+ ++H +F D+G+L I + T +
Sbjct: 247 GDKDVYALVLLNNVLGGSMSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQ 306
Query: 308 IMALTSSIVEVVQSLLEN-IEQREIDKECAKIHAKLIKSQERSYLRALEISKQVMFCGSI 366
+ L SI E +L E + ++E++ ++ L+ S E + R K +
Sbjct: 307 LDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKH 366
Query: 367 LCSEKIIDTISAITCEDIVGVAKKIFSSTPTLAILGPP 404
+++I+ I+A+ +D+ +AK + S++P+++++
Sbjct: 367 RSLDEMIEQINAVQKQDVSRLAKILLSASPSISLINAN 404