RPSBLAST alignment of GI: 254780464 and protein with PDBid: 3ih6

>3ih6_A Putative zinc protease; bordetella pertussis tohama I, structural genomics, PSI-2, protein structure initiative; 2.15A {Bordetella pertussis} Length = 197

 Score = 80.7 bits (198), Expect = 6e-16
 Identities = 29/177 (16%), Positives = 58/177 (32%), Gaps = 5/177 (2%)

Query: 230 KRDLAEEHMMLGFNGCAYQSRDFYLTNILASILGDGMSSRLFQEVREKRGLCYSISAHHE 289
           +R      +   ++  A  S DF   ++ A+IL D  SSRL+  +     L   +     
Sbjct: 19  RRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT-KLASGVFGFTM 77

Query: 290 NFSDNGVLYIASATAKENIM--ALTSSIVEVVQSLLENIEQREIDKECAKIHAKLIKSQE 347
           +  D G+    +          AL +    +     +   Q E+++  +K      ++  
Sbjct: 78  DQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYA 137

Query: 348 RSYLRALEISKQVMFCGSILCSEKIIDTISAITCEDIVGVAKKIFS-STPTLAILGP 403
                 + +S+  +  G         D +     +D+   A      S  T     P
Sbjct: 138 DPEKVGVALSEA-IASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIP 193