Query gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 469
No_of_seqs 191 out of 1646
Neff 5.9
Searched_HMMs 39220
Date Sun May 29 19:14:14 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780465.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09225 threonine synthase; V 100.0 0 0 1328.1 46.5 463 1-463 1-464 (465)
2 cd01560 Thr-synth_2 Threonine 100.0 0 0 1294.2 43.8 456 2-457 1-460 (460)
3 COG0498 ThrC Threonine synthas 100.0 0 0 739.0 28.5 404 1-460 1-410 (411)
4 TIGR00260 thrC threonine synth 100.0 0 0 634.3 24.3 372 61-432 6-423 (423)
5 KOG2616 consensus 100.0 0 0 491.6 17.1 254 158-467 1-266 (266)
6 PRK06260 threonine synthase; V 100.0 1.4E-31 3.6E-36 239.3 25.3 306 86-437 68-394 (400)
7 PRK07591 threonine synthase; V 100.0 6E-28 1.5E-32 214.1 25.8 308 87-459 89-420 (422)
8 PRK08197 threonine synthase; V 100.0 2.1E-27 5.3E-32 210.4 24.8 293 87-425 77-391 (402)
9 PRK05638 threonine synthase; V 100.0 1.5E-25 3.9E-30 197.5 22.9 283 86-423 65-366 (443)
10 cd00640 Trp-synth-beta_II Tryp 100.0 5.4E-26 1.4E-30 200.6 20.2 228 95-412 14-244 (244)
11 PRK07409 threonine synthase; V 99.9 8.5E-25 2.2E-29 192.3 23.1 294 88-436 31-342 (350)
12 PRK06721 threonine synthase; R 99.9 1.8E-23 4.5E-28 183.2 26.4 306 88-462 28-350 (352)
13 PRK06352 threonine synthase; V 99.9 1.6E-23 4.2E-28 183.4 24.1 297 88-438 28-342 (351)
14 PRK08329 threonine synthase; V 99.9 5E-23 1.3E-27 180.0 22.4 277 86-419 62-347 (348)
15 PRK06450 threonine synthase; V 99.9 1.9E-22 4.9E-27 176.0 21.6 274 86-415 54-334 (336)
16 pfam00291 PALP Pyridoxal-phosp 99.9 1.6E-20 4.2E-25 162.6 18.9 233 87-410 6-250 (251)
17 cd01563 Thr-synth_1 Threonine 99.9 1.1E-19 2.8E-24 156.8 21.4 281 88-415 22-323 (324)
18 cd01562 Thr-dehyd Threonine de 99.9 3E-19 7.7E-24 153.8 20.9 273 88-410 17-299 (304)
19 PRK06110 hypothetical protein; 99.8 2E-17 5E-22 141.2 23.0 274 87-410 20-303 (321)
20 PRK08638 threonine dehydratase 99.8 4.8E-17 1.2E-21 138.5 23.3 266 95-410 41-311 (329)
21 cd06448 L-Ser-dehyd Serine deh 99.8 9.6E-17 2.4E-21 136.5 23.5 272 95-411 15-300 (316)
22 PRK07048 serine/threonine dehy 99.8 9.6E-17 2.4E-21 136.5 23.4 264 97-410 40-307 (321)
23 cd06446 Trp-synth_B Tryptophan 99.8 5.9E-17 1.5E-21 137.9 19.8 313 65-420 12-365 (365)
24 PRK06815 hypothetical protein; 99.8 3.7E-16 9.3E-21 132.4 23.8 291 73-413 5-307 (318)
25 PRK06381 threonine synthase; V 99.8 2E-16 5.1E-21 134.2 21.5 287 86-412 13-317 (319)
26 PRK07476 threonine dehydratase 99.8 2.2E-15 5.6E-20 127.0 24.2 279 97-424 38-318 (323)
27 PRK08246 threonine dehydratase 99.8 8.4E-16 2.1E-20 129.9 20.7 266 88-410 20-298 (307)
28 PRK06608 threonine dehydratase 99.7 1.3E-13 3.4E-18 114.7 22.8 273 88-410 24-307 (330)
29 cd01561 CBS_like CBS_like: Thi 99.7 5.5E-14 1.4E-18 117.3 20.8 261 96-416 17-289 (291)
30 PRK10717 cysteine synthase A; 99.6 1.1E-13 2.9E-18 115.1 18.3 280 89-421 14-316 (334)
31 PRK08639 threonine dehydratase 99.6 9.8E-13 2.5E-17 108.7 23.0 296 95-439 39-353 (418)
32 PRK11761 cysM cysteine synthas 99.6 2.5E-12 6.4E-17 105.8 19.9 263 89-418 13-290 (296)
33 PRK08526 threonine dehydratase 99.5 5.2E-12 1.3E-16 103.6 19.4 292 95-439 34-345 (403)
34 PRK08198 threonine dehydratase 99.5 1.3E-11 3.3E-16 100.8 20.1 292 95-439 38-348 (406)
35 PRK06382 threonine dehydratase 99.5 1.1E-11 2.8E-16 101.4 19.6 291 96-439 34-343 (400)
36 PRK08813 threonine dehydratase 99.5 3.5E-11 8.9E-16 97.9 21.6 274 98-430 50-329 (349)
37 PRK07334 threonine dehydratase 99.5 1.1E-10 2.9E-15 94.4 22.5 291 95-439 34-342 (399)
38 PRK09224 threonine dehydratase 99.4 1.3E-10 3.2E-15 94.0 19.2 298 70-423 4-321 (504)
39 COG1171 IlvA Threonine dehydra 99.4 6.1E-10 1.5E-14 89.3 22.0 278 97-424 41-328 (347)
40 PRK12483 threonine dehydratase 99.4 3.4E-10 8.7E-15 91.0 20.3 298 71-423 22-338 (521)
41 PRK08206 diaminopropionate amm 99.3 3.7E-09 9.5E-14 83.9 23.0 275 81-397 17-334 (379)
42 PRK13028 tryptophan synthase s 99.3 1.5E-08 3.8E-13 79.6 23.9 336 24-427 16-400 (403)
43 PRK03910 D-cysteine desulfhydr 99.1 1.4E-07 3.5E-12 73.0 20.4 269 95-410 29-316 (331)
44 KOG1250 consensus 99.0 3.1E-07 7.9E-12 70.5 19.8 280 58-397 39-335 (457)
45 TIGR01127 ilvA_1Cterm threonin 98.9 3.4E-07 8.5E-12 70.3 16.0 263 107-423 26-299 (381)
46 KOG1251 consensus 98.9 1E-06 2.6E-11 66.9 18.2 257 99-410 44-308 (323)
47 TIGR03528 2_3_DAP_am_ly diamin 98.8 7.8E-06 2E-10 60.8 21.1 289 67-397 21-354 (396)
48 COG0031 CysK Cysteine synthase 98.8 3.5E-06 9E-11 63.2 19.0 268 89-415 12-296 (300)
49 TIGR02079 THD1 threonine dehyd 98.7 3.9E-06 9.9E-11 62.9 15.8 333 76-464 3-371 (415)
50 cd06449 ACCD Aminocyclopropane 98.7 2.9E-05 7.3E-10 56.9 19.9 267 97-410 18-305 (307)
51 KOG1252 consensus 98.4 5.9E-05 1.5E-09 54.7 15.6 270 89-417 53-344 (362)
52 TIGR02991 ectoine_eutB ectoine 98.3 0.00023 5.8E-09 50.6 16.4 256 99-408 36-301 (318)
53 TIGR01136 cysKM cysteine synth 97.6 0.01 2.7E-07 39.1 17.6 267 89-413 8-306 (315)
54 TIGR01124 ilvA_2Cterm threonin 97.5 0.0075 1.9E-07 40.1 13.0 271 86-410 17-304 (508)
55 TIGR01138 cysM cysteine syntha 97.1 0.0032 8.3E-08 42.7 8.0 235 105-409 35-285 (300)
56 PRK12390 1-aminocyclopropane-1 96.8 0.062 1.6E-06 33.8 17.8 275 87-410 14-322 (337)
57 TIGR01139 cysK cysteine syntha 96.0 0.16 4.1E-06 30.9 16.5 265 88-412 7-302 (312)
58 PRK04346 tryptophan synthase s 95.9 0.17 4.4E-06 30.7 21.3 328 24-421 13-391 (392)
59 PRK12391 tryptophan synthase s 94.6 0.45 1.1E-05 27.8 16.4 315 66-424 55-417 (419)
60 COG5598 Trimethylamine:corrino 91.1 0.83 2.1E-05 26.0 6.0 193 182-394 205-459 (526)
61 PRK06113 7-alpha-hydroxysteroi 90.0 0.79 2E-05 26.1 5.2 76 128-206 8-84 (255)
62 PRK13803 bifunctional phosphor 89.9 1.7 4.4E-05 23.7 20.9 335 24-424 226-607 (611)
63 PRK09186 flagellin modificatio 89.6 0.9 2.3E-05 25.7 5.2 74 130-206 3-78 (255)
64 PRK06767 methionine gamma-lyas 89.3 0.86 2.2E-05 25.8 4.9 20 440-459 358-377 (386)
65 PRK06198 short chain dehydroge 88.8 1.2 3.1E-05 24.8 5.4 74 130-206 5-80 (268)
66 PRK06077 fabG 3-ketoacyl-(acyl 88.8 1.3 3.3E-05 24.6 5.5 75 130-207 2-78 (249)
67 PRK12825 fabG 3-ketoacyl-(acyl 88.4 1.8 4.6E-05 23.6 6.0 73 130-206 6-81 (250)
68 PRK06947 glucose-1-dehydrogena 88.4 1.6 4.1E-05 23.9 5.8 164 129-308 3-193 (252)
69 PRK07503 methionine gamma-lyas 88.3 1.3 3.4E-05 24.5 5.3 15 326-340 271-285 (403)
70 PRK06227 consensus 88.1 1.4 3.6E-05 24.4 5.3 75 130-207 4-79 (256)
71 PRK08063 enoyl-(acyl carrier p 87.9 1.8 4.7E-05 23.6 5.8 73 132-207 4-79 (250)
72 PRK12743 acetoin dehydrogenase 87.7 1.8 4.6E-05 23.6 5.7 163 133-308 3-185 (253)
73 PRK07904 short chain dehydroge 87.4 2.2 5.6E-05 23.1 6.0 78 130-208 7-86 (253)
74 TIGR01328 met_gam_lyase methio 86.9 0.86 2.2E-05 25.8 3.7 107 108-221 231-341 (392)
75 PRK12935 acetoacetyl-CoA reduc 86.7 2.3 5.9E-05 22.9 5.8 75 131-206 5-80 (247)
76 PRK12937 short chain dehydroge 86.7 2 5.2E-05 23.3 5.5 74 129-206 3-79 (245)
77 PRK09134 short chain dehydroge 86.4 2.4 6.2E-05 22.7 5.7 74 131-207 8-84 (256)
78 PRK06701 short chain dehydroge 85.9 3 7.7E-05 22.1 6.1 78 129-207 42-120 (289)
79 PRK12481 2-deoxy-D-gluconate 3 85.8 3 7.7E-05 22.1 6.2 160 129-308 6-188 (251)
80 PRK06138 short chain dehydroge 85.3 2.7 6.8E-05 22.5 5.5 161 130-308 4-185 (252)
81 PRK08277 D-mannonate oxidoredu 85.3 1.5 3.8E-05 24.2 4.2 78 125-206 4-83 (278)
82 PRK05994 O-acetylhomoserine am 84.7 2.6 6.6E-05 22.5 5.2 15 326-340 300-314 (426)
83 PRK07985 oxidoreductase; Provi 84.4 3.5 9E-05 21.6 6.0 75 130-206 48-124 (294)
84 PRK06234 methionine gamma-lyas 84.1 3.3 8.5E-05 21.8 5.6 15 326-340 271-285 (399)
85 PRK08945 short chain dehydroge 84.1 2.7 7E-05 22.4 5.1 72 130-205 12-88 (245)
86 PRK09135 pteridine reductase; 84.0 3.1 7.8E-05 22.0 5.4 76 130-207 5-82 (249)
87 PRK07063 short chain dehydroge 83.8 3.6 9.3E-05 21.5 5.7 75 131-206 6-81 (259)
88 PRK00066 ldh L-lactate dehydro 83.7 3.5 9E-05 21.6 5.6 129 128-279 3-146 (315)
89 PRK09730 hypothetical protein; 83.6 3.5 8.9E-05 21.6 5.5 73 133-206 2-75 (247)
90 PRK12824 acetoacetyl-CoA reduc 83.5 3.8 9.8E-05 21.3 6.2 164 132-308 2-184 (245)
91 PRK06200 2,3-dihydroxy-2,3-dih 83.3 3.7 9.4E-05 21.5 5.5 72 130-207 5-77 (263)
92 PRK06935 2-deoxy-D-gluconate 3 82.6 3.2 8.3E-05 21.9 5.0 173 119-308 4-195 (258)
93 PRK05653 fabG 3-ketoacyl-(acyl 82.6 4.1 0.00011 21.1 5.6 73 132-207 5-79 (246)
94 PRK08936 glucose-1-dehydrogena 82.5 4.2 0.00011 21.1 6.0 74 132-206 7-81 (261)
95 cd01531 Acr2p Eukaryotic arsen 82.3 4.2 0.00011 21.1 5.9 100 66-174 3-111 (113)
96 PRK12938 acetyacetyl-CoA reduc 82.2 4.3 0.00011 21.0 6.1 73 132-207 3-78 (246)
97 PRK05867 short chain dehydroge 82.2 3.7 9.5E-05 21.4 5.2 160 129-308 7-193 (253)
98 TIGR02915 PEP_resp_reg putativ 82.0 0.75 1.9E-05 26.3 1.6 69 131-204 19-93 (451)
99 PRK06128 oxidoreductase; Provi 82.0 4.3 0.00011 21.0 6.0 76 130-207 54-131 (300)
100 PRK08248 O-acetylhomoserine am 81.9 3.7 9.4E-05 21.5 5.1 15 326-340 301-315 (431)
101 PRK08993 2-deoxy-D-gluconate 3 81.8 4.4 0.00011 20.9 6.0 76 127-207 6-82 (253)
102 PRK08861 cystathionine gamma-s 81.3 4.6 0.00012 20.8 5.7 16 326-341 258-273 (388)
103 pfam10962 DUF2764 Protein of u 81.3 2.3 5.9E-05 22.9 3.9 78 256-348 146-234 (271)
104 PRK02794 DNA polymerase IV; Pr 81.0 1.5 3.8E-05 24.2 2.8 15 182-196 126-140 (417)
105 PRK08339 short chain dehydroge 81.0 4.7 0.00012 20.7 5.5 74 130-205 7-81 (263)
106 PRK07677 short chain dehydroge 80.4 4.9 0.00013 20.6 5.5 73 132-206 3-76 (254)
107 PRK06460 hypothetical protein; 80.3 4.9 0.00013 20.6 5.6 15 325-339 248-262 (375)
108 TIGR01829 AcAcCoA_reduct aceto 80.0 5 0.00013 20.5 5.8 148 133-306 1-181 (244)
109 TIGR01317 GOGAT_sm_gam glutama 79.9 1.3 3.3E-05 24.6 2.2 99 65-180 240-354 (517)
110 PRK08134 O-acetylhomoserine am 79.6 4.3 0.00011 21.0 4.8 17 326-342 301-317 (433)
111 PRK07102 short chain dehydroge 79.5 4.2 0.00011 21.1 4.7 72 132-206 2-75 (243)
112 PRK13394 3-hydroxybutyrate deh 79.3 5.3 0.00014 20.4 5.6 71 132-206 7-80 (262)
113 PRK07201 short chain dehydroge 79.1 4.8 0.00012 20.7 4.9 74 130-207 375-450 (663)
114 PRK07814 short chain dehydroge 78.9 5.4 0.00014 20.3 5.6 73 131-206 9-83 (263)
115 COG3016 PhuW Uncharacterized i 78.7 5.4 0.00014 20.3 5.1 143 98-313 37-183 (295)
116 cd02509 GDP-M1P_Guanylyltransf 78.7 5.5 0.00014 20.3 6.2 18 135-152 77-94 (274)
117 PRK05557 fabG 3-ketoacyl-(acyl 78.2 5.7 0.00015 20.1 6.2 73 130-206 4-79 (248)
118 PRK06079 enoyl-(acyl carrier p 77.8 5.8 0.00015 20.1 6.2 72 130-206 6-79 (252)
119 TIGR01137 cysta_beta cystathio 77.8 4.6 0.00012 20.8 4.5 159 89-269 12-200 (527)
120 PRK08249 cystathionine gamma-s 77.7 5.9 0.00015 20.1 5.4 16 326-341 268-283 (398)
121 PRK12939 short chain dehydroge 77.1 6.1 0.00016 20.0 5.7 72 132-205 7-79 (250)
122 PRK08594 enoyl-(acyl carrier p 77.0 6.1 0.00016 19.9 6.1 76 129-206 4-82 (256)
123 PRK05866 short chain dehydroge 76.7 5.7 0.00014 20.2 4.7 74 130-207 39-114 (290)
124 PRK06123 short chain dehydroge 76.3 6.4 0.00016 19.8 5.8 73 132-206 3-77 (249)
125 pfam00162 PGK Phosphoglycerate 76.2 6.5 0.00016 19.8 5.3 52 106-163 58-110 (383)
126 PRK08642 fabG 3-ketoacyl-(acyl 76.2 6.5 0.00016 19.8 6.2 72 130-206 5-77 (254)
127 PRK07062 short chain dehydroge 76.1 6.5 0.00017 19.8 5.7 75 130-206 7-83 (265)
128 PRK07812 O-acetylhomoserine am 75.9 6.6 0.00017 19.7 4.9 15 326-340 305-319 (436)
129 PRK06720 hypothetical protein; 75.6 6.7 0.00017 19.7 5.5 76 129-207 14-90 (169)
130 PRK06702 O-acetylhomoserine am 75.5 6.7 0.00017 19.7 4.9 12 326-337 298-309 (432)
131 PRK12745 3-ketoacyl-(acyl-carr 75.4 6.7 0.00017 19.7 6.3 75 130-207 3-80 (259)
132 PRK08133 O-succinylhomoserine 75.0 6.9 0.00018 19.6 5.5 12 327-338 267-278 (391)
133 PRK07523 gluconate 5-dehydroge 74.6 7.1 0.00018 19.5 5.7 161 129-308 7-187 (251)
134 pfam06253 MTTB Trimethylamine 74.5 5.4 0.00014 20.3 4.1 189 237-464 286-503 (505)
135 COG1350 Predicted alternative 74.4 7.1 0.00018 19.5 12.7 297 66-408 63-409 (432)
136 TIGR01747 diampropi_NH3ly diam 73.3 7.6 0.00019 19.3 5.6 229 132-396 93-336 (378)
137 TIGR01098 3A0109s03R phosphona 73.2 5.3 0.00014 20.4 3.8 64 107-175 59-122 (299)
138 PRK12748 3-ketoacyl-(acyl-carr 72.8 7.8 0.0002 19.2 5.8 78 129-207 3-92 (257)
139 PRK12823 benD 1,6-dihydroxycyc 72.7 7.8 0.0002 19.2 6.1 74 130-207 7-81 (260)
140 PRK08213 gluconate 5-dehydroge 72.6 7.9 0.0002 19.2 5.7 75 128-206 9-85 (259)
141 PRK07811 cystathionine gamma-s 72.5 7.9 0.0002 19.2 5.5 13 326-338 263-275 (386)
142 TIGR00865 bcl-2 Apoptosis regu 72.4 2.8 7.1E-05 22.3 2.3 37 198-248 133-169 (243)
143 PRK09028 cystathionine beta-ly 72.1 8.1 0.00021 19.1 5.3 15 326-340 265-279 (394)
144 pfam10128 OpcA_G6PD_assem Gluc 71.7 5.6 0.00014 20.2 3.7 56 218-277 119-185 (267)
145 PRK12826 3-ketoacyl-(acyl-carr 71.5 8.3 0.00021 19.0 5.7 73 132-207 6-80 (253)
146 PRK06125 short chain dehydroge 71.1 8.5 0.00022 19.0 5.6 73 129-204 5-79 (259)
147 PRK06940 short chain dehydroge 70.8 8.6 0.00022 18.9 5.5 70 130-204 3-74 (277)
148 cd01474 vWA_ATR ATR (Anthrax T 70.8 8.6 0.00022 18.9 6.1 94 105-205 77-178 (185)
149 PRK06084 O-acetylhomoserine am 70.7 8.7 0.00022 18.9 5.1 17 443-459 398-414 (424)
150 PRK12384 sorbitol-6-phosphate 70.6 8.7 0.00022 18.9 5.3 75 131-207 2-78 (259)
151 pfam00452 Bcl-2 Apoptosis regu 70.5 4.5 0.00011 20.9 3.0 31 194-239 32-62 (100)
152 PRK08085 gluconate 5-dehydroge 69.9 9 0.00023 18.8 5.6 76 128-207 6-83 (254)
153 PRK07074 short chain dehydroge 69.7 9.1 0.00023 18.8 6.2 68 133-204 3-71 (256)
154 PRK05565 fabG 3-ketoacyl-(acyl 69.5 9.2 0.00023 18.7 5.7 73 130-206 4-79 (247)
155 PRK08416 7-alpha-hydroxysteroi 69.2 9.3 0.00024 18.7 5.7 75 130-206 7-83 (260)
156 PRK07109 short chain dehydroge 69.1 9.3 0.00024 18.7 5.2 75 129-206 5-81 (338)
157 PRK07504 O-succinylhomoserine 69.1 9.3 0.00024 18.7 5.1 13 326-338 270-282 (397)
158 PRK00073 pgk phosphoglycerate 68.8 9.4 0.00024 18.6 5.2 52 106-163 61-113 (391)
159 PRK05650 short chain dehydroge 68.7 9.5 0.00024 18.6 5.1 70 133-206 2-73 (270)
160 TIGR03325 BphB_TodD cis-2,3-di 68.7 9.5 0.00024 18.6 6.5 72 130-207 4-76 (262)
161 PRK07890 short chain dehydroge 68.4 9.6 0.00024 18.6 5.6 73 130-206 4-78 (258)
162 PRK08574 cystathionine gamma-s 68.0 9.8 0.00025 18.5 5.3 16 325-340 256-271 (384)
163 PRK12859 3-ketoacyl-(acyl-carr 68.0 9.8 0.00025 18.5 5.8 77 130-207 5-93 (257)
164 PRK05756 pyridoxamine kinase; 68.0 9.8 0.00025 18.5 5.6 15 193-207 160-174 (287)
165 PRK07479 consensus 67.8 9.9 0.00025 18.5 5.8 75 129-207 3-79 (252)
166 cd06845 Bcl-2_like Apoptosis r 67.6 7.6 0.00019 19.3 3.6 28 191-230 66-93 (144)
167 PRK06949 short chain dehydroge 67.3 10 0.00026 18.4 5.6 75 128-206 6-82 (258)
168 PRK06196 oxidoreductase; Provi 67.3 10 0.00026 18.4 4.9 72 129-207 24-96 (316)
169 PRK07454 short chain dehydroge 67.1 10 0.00026 18.4 5.5 74 130-207 4-80 (241)
170 PTZ00069 60S ribosomal protein 67.0 10 0.00026 18.4 5.3 14 328-341 202-215 (300)
171 COG0626 MetC Cystathionine bet 66.8 10 0.00026 18.4 5.3 148 100-270 27-179 (396)
172 TIGR01275 ACC_deam_rel pyridox 66.7 7 0.00018 19.5 3.3 235 119-397 44-307 (339)
173 PRK07533 enoyl-(acyl carrier p 66.5 10 0.00027 18.3 6.0 76 128-206 3-80 (254)
174 PRK12746 short chain dehydroge 66.5 10 0.00027 18.3 5.7 162 130-307 5-191 (254)
175 TIGR00020 prfB peptide chain r 66.0 3.8 9.7E-05 21.4 1.8 85 99-196 266-363 (373)
176 PRK09242 tropinone reductase; 65.9 11 0.00027 18.3 5.5 76 129-206 8-85 (258)
177 cd00614 CGS_like CGS_like: Cys 65.9 11 0.00027 18.2 5.7 68 136-205 33-100 (369)
178 KOG1395 consensus 65.1 11 0.00028 18.1 6.0 346 25-430 78-465 (477)
179 KOG0875 consensus 65.0 10 0.00027 18.3 3.9 16 257-272 92-116 (264)
180 PRK06114 short chain dehydroge 64.9 11 0.00029 18.1 6.1 159 130-307 15-199 (262)
181 pfam00056 Ldh_1_N lactate/mala 64.6 8 0.0002 19.2 3.3 129 133-277 2-140 (142)
182 PRK06841 short chain dehydroge 64.4 11 0.00029 18.1 6.5 160 127-308 11-193 (255)
183 PRK05599 hypothetical protein; 63.8 12 0.0003 18.0 4.2 69 134-206 3-73 (246)
184 KOG1481 consensus 63.6 12 0.0003 18.0 16.6 299 89-435 50-386 (391)
185 PRK07576 short chain dehydroge 63.3 12 0.0003 17.9 5.7 74 129-206 6-81 (260)
186 TIGR03206 benzo_BadH 2-hydroxy 63.2 12 0.00031 17.9 5.7 71 133-206 4-76 (250)
187 TIGR02974 phageshock_pspF psp 63.2 4.2 0.00011 21.1 1.6 22 275-298 136-157 (349)
188 PRK07326 short chain dehydroge 62.9 12 0.00031 17.9 6.1 73 131-207 4-77 (235)
189 PRK06197 short chain dehydroge 62.9 12 0.00031 17.9 4.5 70 130-206 15-91 (306)
190 COG1086 Predicted nucleoside-d 62.8 12 0.00031 17.9 6.4 80 115-207 99-179 (588)
191 PRK08561 rps15p 30S ribosomal 62.8 11 0.00029 18.1 3.7 71 362-443 27-97 (151)
192 PRK07478 short chain dehydroge 62.1 13 0.00032 17.8 5.6 73 131-206 5-79 (254)
193 PRK06434 cystathionine gamma-l 61.9 13 0.00032 17.8 4.4 19 326-344 266-284 (384)
194 cd00318 Phosphoglycerate_kinas 61.9 13 0.00032 17.8 4.8 52 106-163 57-109 (397)
195 PRK12429 3-hydroxybutyrate deh 61.7 13 0.00032 17.7 5.7 71 133-206 5-77 (258)
196 PRK07035 short chain dehydroge 61.7 13 0.00032 17.7 5.6 75 129-207 6-82 (252)
197 PRK13962 bifunctional phosphog 61.6 13 0.00033 17.7 4.7 18 187-204 410-427 (653)
198 smart00337 BCL BCL (B-Cell lym 61.0 10 0.00026 18.4 3.3 31 193-237 30-60 (100)
199 PRK07231 fabG 3-ketoacyl-(acyl 61.0 13 0.00033 17.7 6.3 74 128-207 3-78 (250)
200 PRK05717 oxidoreductase; Valid 60.9 13 0.00034 17.6 6.3 71 131-207 9-81 (255)
201 PRK05854 short chain dehydroge 60.7 13 0.00034 17.6 4.4 76 129-207 12-90 (314)
202 PRK08217 fabG 3-ketoacyl-(acyl 60.6 13 0.00034 17.6 5.5 75 129-207 3-79 (253)
203 PRK05875 short chain dehydroge 60.4 13 0.00034 17.6 5.4 75 130-207 6-84 (277)
204 PRK06172 short chain dehydroge 60.3 13 0.00034 17.6 5.6 74 130-206 6-80 (253)
205 COG0126 Pgk 3-phosphoglycerate 60.1 14 0.00035 17.5 4.3 49 107-163 64-114 (395)
206 PRK05876 short chain dehydroge 59.8 14 0.00035 17.5 5.1 75 130-207 5-80 (275)
207 PRK08114 cystathionine beta-ly 59.7 14 0.00035 17.5 4.6 17 444-460 370-386 (395)
208 PRK07024 short chain dehydroge 59.6 14 0.00035 17.5 5.9 71 131-207 2-74 (256)
209 PRK08643 acetoin reductase; Va 59.2 14 0.00036 17.4 5.5 73 133-207 3-76 (256)
210 PRK12827 short chain dehydroge 59.1 14 0.00036 17.4 6.6 163 132-308 6-192 (251)
211 pfam07429 Fuc4NAc_transf 4-alp 58.9 12 0.0003 18.0 3.3 49 118-171 122-171 (361)
212 PRK07097 gluconate 5-dehydroge 58.7 14 0.00036 17.4 5.7 169 125-308 4-191 (265)
213 pfam01053 Cys_Met_Meta_PP Cys/ 58.5 14 0.00037 17.4 5.0 14 326-339 258-271 (381)
214 cd01065 NAD_bind_Shikimate_DH 58.5 14 0.00037 17.4 4.0 44 118-163 6-49 (155)
215 PRK07774 short chain dehydroge 58.4 14 0.00037 17.4 5.6 74 132-207 6-80 (250)
216 PRK08045 cystathionine gamma-s 58.1 15 0.00037 17.3 5.9 14 327-340 258-271 (386)
217 COG1198 PriA Primosomal protei 57.5 15 0.00038 17.3 3.7 71 99-176 217-287 (730)
218 PRK07831 short chain dehydroge 56.0 16 0.0004 17.1 5.5 76 130-207 15-93 (261)
219 PTZ00005 phosphoglycerate kina 55.3 16 0.00041 17.0 5.2 52 106-163 69-121 (419)
220 TIGR01241 FtsH_fam ATP-depende 55.2 5.2 0.00013 20.5 1.0 107 246-372 386-504 (505)
221 smart00822 PKS_KR This enzymat 55.2 16 0.00041 17.0 5.5 73 135-207 3-78 (180)
222 PRK08263 short chain dehydroge 55.1 16 0.00042 17.0 5.3 70 131-206 3-73 (275)
223 COG1222 RPT1 ATP-dependent 26S 54.9 13 0.00033 17.7 2.9 74 263-336 277-366 (406)
224 PRK08226 short chain dehydroge 54.8 16 0.00042 17.0 6.0 162 131-308 5-187 (263)
225 PRK07049 methionine gamma-lyas 54.6 17 0.00042 16.9 5.4 17 10-26 13-30 (427)
226 PRK02991 D-serine dehydratase; 54.5 17 0.00042 16.9 5.6 211 133-397 159-396 (443)
227 PRK05613 O-acetylhomoserine am 54.5 17 0.00042 16.9 5.0 16 326-341 310-325 (437)
228 PRK11595 gluconate periplasmic 54.4 15 0.00039 17.2 3.2 54 221-274 86-150 (227)
229 PRK12936 3-ketoacyl-(acyl-carr 54.3 17 0.00043 16.9 6.2 72 130-207 5-77 (245)
230 PRK07832 short chain dehydroge 54.1 17 0.00043 16.9 4.8 73 132-207 1-75 (272)
231 PRK07984 enoyl-(acyl carrier p 53.9 17 0.00043 16.9 5.3 74 130-206 5-80 (262)
232 PRK08415 enoyl-(acyl carrier p 53.9 17 0.00043 16.9 5.7 75 130-207 4-80 (274)
233 TIGR02759 TraD_Ftype type IV c 53.5 11 0.00028 18.2 2.4 94 61-167 156-265 (613)
234 PRK08589 short chain dehydroge 53.5 17 0.00044 16.8 5.9 160 131-308 5-186 (272)
235 PRK06182 short chain dehydroge 53.4 17 0.00044 16.8 4.5 68 132-207 3-71 (273)
236 PRK08569 rpl18p 50S ribosomal 52.6 18 0.00045 16.7 4.2 40 327-377 144-186 (193)
237 PRK11658 UDP-4-amino-4-deoxy-L 52.5 17 0.00045 16.8 3.3 34 252-288 166-202 (379)
238 PRK06124 gluconate 5-dehydroge 52.1 18 0.00046 16.7 5.7 75 128-207 11-88 (259)
239 PRK05580 primosome assembly pr 51.7 18 0.00047 16.6 5.4 67 102-175 189-255 (699)
240 PRK08159 enoyl-(acyl carrier p 51.4 19 0.00047 16.6 5.7 74 130-206 9-84 (272)
241 PRK06463 fabG 3-ketoacyl-(acyl 51.2 19 0.00048 16.6 5.8 69 131-206 6-75 (254)
242 cd05291 HicDH_like L-2-hydroxy 51.0 15 0.00039 17.2 2.8 60 132-197 1-66 (306)
243 PRK08776 cystathionine gamma-s 50.7 19 0.00048 16.5 5.3 17 326-342 265-281 (405)
244 COG4650 RtcR Sigma54-dependent 50.7 19 0.00049 16.5 4.7 95 350-460 418-517 (531)
245 KOG4270 consensus 50.5 7.1 0.00018 19.5 1.0 11 195-205 255-265 (577)
246 PRK08862 short chain dehydroge 50.1 19 0.00049 16.5 4.8 71 130-205 4-77 (227)
247 PRK12747 short chain dehydroge 50.1 19 0.0005 16.5 5.7 75 130-207 3-79 (252)
248 COG0855 Ppk Polyphosphate kina 49.9 5.2 0.00013 20.4 0.3 156 155-325 340-523 (696)
249 PRK07810 O-succinylhomoserine 49.9 20 0.0005 16.4 4.8 14 326-339 278-291 (406)
250 pfam11537 DUF3227 Protein of u 49.7 13 0.00032 17.8 2.2 86 367-460 7-95 (102)
251 cd01443 Cdc25_Acr2p Cdc25 enzy 49.7 20 0.0005 16.4 6.6 88 66-157 3-92 (113)
252 pfam04458 DUF505 Protein of un 48.7 20 0.00052 16.3 4.3 27 103-129 189-215 (591)
253 pfam01488 Shikimate_DH Shikima 48.7 20 0.00052 16.3 3.2 33 129-163 10-42 (134)
254 PRK07067 sorbitol dehydrogenas 48.3 21 0.00053 16.3 6.3 160 130-307 4-183 (256)
255 PRK08628 short chain dehydroge 47.8 21 0.00054 16.2 6.7 73 132-207 7-80 (258)
256 PRK08703 short chain dehydroge 47.7 21 0.00054 16.2 5.1 73 130-205 5-81 (239)
257 PRK06346 consensus 47.3 21 0.00055 16.2 5.6 72 130-205 4-77 (251)
258 PRK07245 consensus 47.1 6.5 0.00017 19.8 0.4 55 90-145 88-143 (337)
259 PRK09496 trkA potassium transp 46.8 22 0.00055 16.1 3.1 132 146-308 219-352 (455)
260 PRK07791 short chain dehydroge 46.7 22 0.00056 16.1 5.6 74 131-207 5-89 (285)
261 PRK12829 short chain dehydroge 46.5 22 0.00056 16.1 6.4 157 130-308 10-192 (264)
262 TIGR01817 nifA Nif-specific re 46.3 12 0.00031 17.9 1.7 113 258-386 316-453 (574)
263 TIGR02471 sucr_syn_bact_C sucr 46.3 12 0.00029 18.0 1.6 57 223-285 126-192 (241)
264 PRK02287 hypothetical protein; 45.7 22 0.00056 16.1 2.9 64 159-228 39-104 (169)
265 cd05294 LDH-like_MDH_nadp A la 44.9 23 0.00059 15.9 5.4 129 133-281 2-147 (309)
266 TIGR01512 ATPase-IB2_Cd cadmiu 44.2 12 0.0003 18.0 1.3 15 248-262 200-214 (494)
267 TIGR03158 cas3_cyano CRISPR-as 43.6 24 0.0006 15.9 2.8 67 126-194 8-81 (357)
268 PRK06505 enoyl-(acyl carrier p 43.1 25 0.00063 15.7 5.7 75 130-207 6-82 (271)
269 PTZ00082 L-lactate dehydrogena 42.9 25 0.00063 15.7 6.9 64 130-197 6-73 (322)
270 PRK07775 short chain dehydroge 42.7 25 0.00064 15.7 5.3 73 131-206 9-83 (275)
271 PRK06179 short chain dehydroge 42.6 25 0.00064 15.7 5.9 67 131-207 3-70 (270)
272 TIGR00457 asnS asparaginyl-tRN 42.5 25 0.00064 15.7 3.4 290 38-392 124-466 (495)
273 PRK07671 cystathionine beta-ly 42.5 25 0.00064 15.7 5.5 81 115-204 74-160 (377)
274 PRK06203 aroB 3-dehydroquinate 42.2 25 0.00065 15.7 5.3 53 328-380 334-386 (390)
275 PRK06139 short chain dehydroge 42.1 26 0.00065 15.6 5.0 73 130-206 5-79 (324)
276 PRK08251 short chain dehydroge 41.8 26 0.00066 15.6 5.2 74 131-207 2-78 (248)
277 PRK05993 short chain dehydroge 41.7 26 0.00066 15.6 4.3 67 131-206 4-71 (277)
278 cd01173 pyridoxal_pyridoxamine 41.4 26 0.00067 15.6 5.7 12 193-204 157-168 (254)
279 COG1453 Predicted oxidoreducta 41.3 26 0.00067 15.6 9.0 17 65-81 29-45 (391)
280 COG3829 RocR Transcriptional r 40.6 17 0.00044 16.8 1.8 88 271-375 378-475 (560)
281 cd05293 LDH_1 A subgroup of L- 40.2 27 0.0007 15.4 3.1 135 130-279 2-144 (312)
282 PRK06176 cystathionine gamma-s 40.1 27 0.0007 15.4 4.9 111 80-204 44-160 (379)
283 COG1205 Distinct helicase fami 39.8 28 0.0007 15.4 3.6 169 129-311 83-272 (851)
284 PRK06500 short chain dehydroge 39.6 28 0.00071 15.4 6.1 71 130-206 5-76 (249)
285 PRK06484 short chain dehydroge 39.5 28 0.00071 15.4 6.3 232 65-320 59-339 (530)
286 cd01525 RHOD_Kc Member of the 39.2 28 0.00072 15.3 4.1 42 129-172 62-103 (105)
287 PRK07392 threonine-phosphate d 39.1 14 0.00035 17.5 1.1 17 65-81 55-71 (358)
288 TIGR02354 thiF_fam2 thiamine b 38.9 28 0.00071 15.4 2.6 111 253-396 28-151 (200)
289 PRK12828 short chain dehydroge 38.4 29 0.00074 15.3 6.2 133 130-271 6-161 (239)
290 TIGR01420 pilT_fam twitching m 38.4 29 0.00074 15.3 2.9 136 21-176 21-181 (350)
291 PRK05872 short chain dehydroge 38.3 29 0.00074 15.3 6.1 71 130-206 8-79 (296)
292 PRK00258 aroE shikimate 5-dehy 38.3 29 0.00074 15.3 4.6 44 118-163 109-152 (275)
293 PRK06482 short chain dehydroge 38.0 29 0.00075 15.2 5.7 70 133-207 3-73 (276)
294 KOG1383 consensus 37.8 30 0.00075 15.2 3.2 138 67-206 91-246 (491)
295 PRK05693 short chain dehydroge 37.7 30 0.00076 15.2 4.0 66 134-207 3-69 (274)
296 TIGR01182 eda 2-dehydro-3-deox 37.6 30 0.00076 15.2 4.6 54 145-205 136-202 (205)
297 cd00300 LDH_like L-lactate deh 37.6 30 0.00076 15.2 2.8 121 134-279 1-139 (300)
298 PRK07666 fabG 3-ketoacyl-(acyl 37.3 30 0.00077 15.1 5.6 74 130-207 5-80 (238)
299 pfam06309 Torsin Torsin. This 37.1 30 0.00077 15.1 5.5 79 50-140 15-93 (127)
300 KOG2452 consensus 36.9 22 0.00057 16.1 1.8 38 353-390 688-726 (881)
301 TIGR01830 3oxo_ACP_reduc 3-oxo 36.8 31 0.00078 15.1 5.4 143 136-307 2-178 (238)
302 pfam04034 DUF367 Domain of unk 36.4 23 0.00059 16.0 1.9 62 161-228 1-65 (128)
303 PRK08056 threonine-phosphate d 36.4 20 0.0005 16.4 1.5 16 65-80 53-68 (356)
304 PRK06483 short chain dehydroge 36.2 31 0.0008 15.0 5.6 68 131-206 2-70 (236)
305 PRK07370 enoyl-(acyl carrier p 36.2 31 0.0008 15.0 6.1 78 128-207 4-85 (259)
306 cd03750 proteasome_alpha_type_ 36.1 31 0.0008 15.0 5.2 57 181-241 63-119 (227)
307 PRK07776 consensus 36.0 31 0.0008 15.0 6.2 71 130-206 7-79 (252)
308 PRK04309 DNA-directed RNA poly 35.7 32 0.00081 15.0 4.7 35 47-82 14-48 (381)
309 PRK08220 2,3-dihydroxybenzoate 35.4 32 0.00082 14.9 7.0 68 129-207 6-74 (253)
310 cd03754 proteasome_alpha_type_ 34.8 33 0.00084 14.9 4.9 56 182-241 66-121 (215)
311 COG1219 ClpX ATP-dependent pro 34.6 22 0.00057 16.1 1.6 59 64-125 65-123 (408)
312 PRK04183 glutamyl-tRNA(Gln) am 34.5 33 0.00085 14.9 5.7 268 35-337 98-404 (421)
313 TIGR03332 salvage_mtnW 2,3-dik 34.5 33 0.00085 14.8 8.7 24 248-273 236-261 (407)
314 PRK09620 hypothetical protein; 34.4 33 0.00085 14.8 5.7 64 136-208 23-86 (229)
315 KOG1511 consensus 34.3 17 0.00044 16.8 0.9 16 256-271 151-166 (397)
316 PRK12744 short chain dehydroge 34.1 34 0.00086 14.8 5.3 160 130-307 7-190 (257)
317 TIGR01235 pyruv_carbox pyruvat 33.8 12 0.00031 17.8 0.1 352 73-462 563-987 (1169)
318 PRK12475 thiamine/molybdopteri 33.7 34 0.00087 14.8 2.9 50 128-180 21-72 (337)
319 pfam03853 YjeF_N YjeF-related 33.4 35 0.00088 14.7 5.9 59 119-178 16-78 (170)
320 pfam09872 DUF2099 Uncharacteri 33.3 19 0.00049 16.5 1.1 30 360-389 119-148 (257)
321 PRK08690 enoyl-(acyl carrier p 33.1 35 0.00089 14.7 5.8 74 130-206 5-80 (261)
322 TIGR00623 sula cell division i 33.0 15 0.00038 17.3 0.4 30 363-392 122-153 (168)
323 TIGR02356 adenyl_thiF thiazole 32.6 36 0.00091 14.6 4.6 46 131-179 21-68 (210)
324 COG0062 Uncharacterized conser 32.6 29 0.00074 15.3 1.9 75 131-206 49-129 (203)
325 PTZ00149 hypoxanthine phosphor 32.5 30 0.00076 15.2 1.9 23 182-204 67-90 (231)
326 PRK07940 DNA polymerase III su 32.5 36 0.00091 14.6 2.9 91 65-167 6-97 (395)
327 TIGR01975 isoAsp_dipep beta-as 32.2 35 0.00088 14.7 2.2 70 231-300 229-305 (391)
328 PRK06181 short chain dehydroge 32.2 36 0.00092 14.6 5.2 72 132-207 2-75 (263)
329 cd06447 D-Ser-dehyd D-Serine d 31.7 37 0.00094 14.5 13.1 213 133-397 134-371 (404)
330 PRK13802 bifunctional indole-3 31.7 37 0.00094 14.5 20.9 354 23-429 279-678 (695)
331 COG4123 Predicted O-methyltran 31.5 37 0.00094 14.5 4.0 158 131-298 45-215 (248)
332 PTZ00072 40S ribosomal protein 31.4 37 0.00095 14.5 3.2 71 362-443 24-94 (148)
333 cd01701 Pol_zeta Pol_zeta, a m 31.2 37 0.00096 14.5 4.5 79 181-276 140-229 (405)
334 KOG0733 consensus 31.1 38 0.00096 14.5 3.0 60 103-164 227-288 (802)
335 PRK08340 glucose-1-dehydrogena 31.0 38 0.00096 14.5 5.4 67 136-206 4-72 (259)
336 COG2874 FlaH Predicted ATPases 31.0 38 0.00096 14.5 3.2 59 366-425 113-179 (235)
337 TIGR00382 clpX ATP-dependent C 30.9 19 0.00049 16.5 0.7 22 104-125 157-178 (452)
338 PRK08472 fliI flagellum-specif 30.7 38 0.00097 14.4 5.1 11 303-313 342-352 (435)
339 TIGR02939 RpoE_Sigma70 RNA pol 30.5 24 0.00061 15.8 1.2 15 328-342 131-145 (192)
340 cd02152 OAT Ornithine acetyltr 30.5 38 0.00098 14.4 2.5 43 187-232 270-314 (390)
341 TIGR00631 uvrb excinuclease AB 30.4 39 0.00098 14.4 3.6 37 125-163 23-60 (667)
342 TIGR01349 PDHac_trf_mito pyruv 30.3 14 0.00036 17.4 -0.0 20 156-176 178-197 (584)
343 PRK08265 short chain dehydroge 30.0 39 0.001 14.4 6.3 156 132-308 6-182 (261)
344 PTZ00325 malate dehydrogenase; 29.9 39 0.001 14.3 3.1 34 132-166 2-35 (313)
345 TIGR01886 dipeptidase dipeptid 29.8 39 0.001 14.3 2.5 36 130-165 144-181 (480)
346 KOG2728 consensus 29.8 39 0.001 14.3 5.6 64 110-175 10-91 (302)
347 COG5256 TEF1 Translation elong 29.8 28 0.00071 15.4 1.4 51 65-118 32-102 (428)
348 pfam01960 ArgJ ArgJ family. Me 29.5 40 0.001 14.3 2.5 43 187-232 267-311 (387)
349 PRK07792 fabG 3-ketoacyl-(acyl 29.3 40 0.001 14.3 6.4 70 132-204 9-81 (303)
350 PRK07208 hypothetical protein; 29.0 41 0.001 14.2 5.0 30 131-163 3-32 (474)
351 PRK07582 cystathionine gamma-l 28.7 41 0.0011 14.2 6.0 12 326-337 255-266 (370)
352 TIGR02389 RNA_pol_rpoA2 DNA-di 28.6 4.6 0.00012 20.8 -2.8 32 306-342 98-130 (397)
353 pfam03846 SulA Cell division i 28.6 33 0.00083 14.9 1.6 54 240-297 55-113 (119)
354 COG0011 Uncharacterized conser 28.3 35 0.00088 14.7 1.7 16 190-205 46-61 (100)
355 pfam06606 consensus 28.2 24 0.0006 15.9 0.8 176 50-311 2-186 (243)
356 PRK00876 nadE NAD synthetase; 28.1 42 0.0011 14.1 9.5 86 120-207 20-119 (325)
357 pfam09761 consensus 27.9 42 0.0011 14.1 2.9 23 61-83 86-108 (454)
358 PRK12771 putative glutamate sy 27.9 42 0.0011 14.1 3.8 33 128-163 134-166 (560)
359 KOG1611 consensus 27.8 43 0.0011 14.1 6.4 67 108-204 9-76 (249)
360 PRK06732 phosphopantothenate-- 27.6 43 0.0011 14.1 5.3 62 136-207 20-81 (228)
361 PRK06523 short chain dehydroge 27.5 43 0.0011 14.1 7.0 67 129-207 7-74 (260)
362 cd04240 AAK_UC AAK_UC: Unchara 27.2 44 0.0011 14.0 2.0 28 258-287 116-143 (203)
363 cd06402 PB1_p62 The PB1 domain 27.2 44 0.0011 14.0 2.5 55 307-374 20-74 (87)
364 pfam04135 Nop10p Nucleolar RNA 27.1 20 0.00052 16.3 0.3 12 407-418 26-37 (53)
365 TIGR02128 G6PI_arch bifunction 27.1 44 0.0011 14.0 3.0 157 98-313 47-211 (338)
366 PRK07806 short chain dehydroge 27.1 44 0.0011 14.0 5.8 73 132-207 6-81 (248)
367 cd00046 DEXDc DEAD-like helica 26.9 44 0.0011 14.0 2.4 14 157-170 30-43 (144)
368 PRK09074 consensus 26.9 44 0.0011 14.0 2.6 36 252-294 365-405 (1149)
369 cd02990 UAS_FAF1 UAS family, F 26.7 44 0.0011 14.0 3.7 64 277-340 26-94 (136)
370 PRK08278 short chain dehydroge 26.7 45 0.0011 14.0 6.1 73 132-206 6-86 (273)
371 PRK01810 DNA polymerase IV; Va 26.6 45 0.0011 14.0 4.4 12 369-380 369-380 (410)
372 PRK08762 molybdopterin biosynt 26.5 45 0.0011 13.9 3.7 164 65-280 4-169 (379)
373 PTZ00117 malate dehydrogenase; 26.3 45 0.0012 13.9 7.3 203 132-384 2-222 (313)
374 COG2518 Pcm Protein-L-isoaspar 26.3 45 0.0012 13.9 4.5 85 100-193 46-130 (209)
375 cd05292 LDH_2 A subgroup of L- 26.2 45 0.0012 13.9 2.8 32 133-166 2-33 (308)
376 smart00550 Zalpha Z-DNA-bindin 26.0 23 0.0006 15.9 0.5 34 260-299 23-56 (68)
377 cd00424 Pol_Y Y-family of DNA 25.9 35 0.00089 14.7 1.3 21 358-378 247-267 (341)
378 COG0028 IlvB Thiamine pyrophos 25.9 46 0.0012 13.9 5.3 19 66-84 129-147 (550)
379 TIGR00832 acr3 arsenical-resis 25.8 26 0.00067 15.6 0.7 55 261-318 281-338 (375)
380 pfam02097 Filo_VP35 Filovirida 25.7 24 0.00062 15.8 0.5 26 132-157 121-148 (321)
381 PRK10595 SOS cell division inh 25.7 35 0.00088 14.7 1.3 34 263-297 74-112 (167)
382 pfam00106 adh_short short chai 25.7 46 0.0012 13.8 5.5 71 135-206 3-76 (167)
383 TIGR02627 rhamnulo_kin rhamnul 25.7 27 0.00068 15.5 0.7 32 125-156 218-249 (460)
384 TIGR00461 gcvP glycine dehydro 25.6 12 0.00031 17.8 -1.0 17 136-152 130-146 (965)
385 cd03751 proteasome_alpha_type_ 25.5 47 0.0012 13.8 4.4 23 182-205 67-89 (212)
386 PRK02551 hypothetical protein; 25.4 47 0.0012 13.8 2.6 22 251-272 99-125 (154)
387 PRK05967 cystathionine beta-ly 25.1 47 0.0012 13.8 5.1 14 326-339 268-281 (392)
388 KOG1759 consensus 24.9 48 0.0012 13.7 2.3 32 251-283 14-45 (115)
389 COG3429 Glucose-6-P dehydrogen 24.7 37 0.00096 14.5 1.3 55 219-277 157-223 (314)
390 PRK07721 fliI flagellum-specif 24.7 48 0.0012 13.7 4.9 13 301-313 338-350 (435)
391 pfam02149 KA1 Kinase associate 24.7 24 0.00061 15.8 0.3 19 104-122 26-44 (46)
392 cd01480 vWA_collagen_alpha_1-V 24.6 48 0.0012 13.7 5.5 38 155-197 138-175 (186)
393 PRK13942 protein-L-isoaspartat 24.6 48 0.0012 13.7 5.1 82 104-192 54-136 (214)
394 COG0470 HolB ATPase involved i 24.4 49 0.0012 13.7 5.7 24 101-124 26-49 (325)
395 TIGR00108 eRF peptide chain re 24.3 38 0.00098 14.4 1.3 21 97-117 28-48 (425)
396 TIGR03326 rubisco_III ribulose 24.2 49 0.0013 13.7 8.1 26 248-273 241-267 (412)
397 PRK06180 short chain dehydroge 24.2 49 0.0013 13.7 5.7 70 132-206 4-74 (277)
398 PRK08303 short chain dehydroge 24.1 50 0.0013 13.6 5.6 75 130-206 7-91 (305)
399 pfam01935 DUF87 Domain of unkn 23.9 50 0.0013 13.6 3.5 57 131-191 23-82 (218)
400 pfam08659 KR KR domain. This e 23.9 50 0.0013 13.6 6.2 72 135-206 3-77 (181)
401 pfam02503 PP_kinase Polyphosph 23.6 19 0.00048 16.6 -0.4 114 152-267 328-465 (678)
402 cd06528 RNAP_A'' A'' subunit o 23.5 51 0.0013 13.6 3.0 21 366-386 262-282 (363)
403 KOG1031 consensus 23.5 27 0.00069 15.5 0.4 21 219-239 663-683 (1169)
404 pfam11637 UvsW ATP-dependant D 23.3 23 0.00059 15.9 0.0 19 295-313 17-35 (54)
405 PRK09549 mtnW 2,3-diketo-5-met 23.2 51 0.0013 13.5 7.0 24 248-273 237-262 (411)
406 cd01518 RHOD_YceA Member of th 23.2 52 0.0013 13.5 5.3 92 64-171 1-98 (101)
407 TIGR01143 murF UDP-N-acetylmur 23.1 38 0.00098 14.4 1.1 84 239-341 256-346 (462)
408 PRK07688 thiamine/molybdopteri 23.0 52 0.0013 13.5 2.7 49 129-180 22-72 (339)
409 PRK07152 nadD putative nicotin 22.9 11 0.00028 18.2 -1.7 31 362-396 235-271 (343)
410 PRK01216 DNA polymerase IV; Va 22.8 48 0.0012 13.7 1.6 76 181-277 95-184 (351)
411 TIGR02673 FtsE cell division A 22.8 52 0.0013 13.5 3.1 96 182-287 97-201 (215)
412 pfam05368 NmrA NmrA-like famil 22.8 52 0.0013 13.5 4.5 61 136-207 2-64 (232)
413 COG2515 Acd 1-aminocyclopropan 22.7 53 0.0013 13.5 3.6 54 357-410 252-310 (323)
414 TIGR01524 ATPase-IIIB_Mg magne 22.7 38 0.00098 14.4 1.0 16 382-397 537-552 (892)
415 pfam10767 DUF2593 Protein of u 22.6 53 0.0013 13.5 4.1 51 216-269 66-122 (144)
416 cd03308 CmuA_CmuC_like CmuA_Cm 22.4 53 0.0014 13.4 7.4 11 84-94 16-26 (378)
417 cd01487 E1_ThiF_like E1_ThiF_l 22.4 53 0.0014 13.4 2.7 44 250-323 3-46 (174)
418 KOG0822 consensus 22.4 53 0.0014 13.4 4.1 16 314-329 328-343 (649)
419 PRK07889 enoyl-(acyl carrier p 22.3 53 0.0014 13.4 5.9 72 130-206 6-80 (256)
420 pfam08981 consensus 22.2 54 0.0014 13.4 5.4 33 130-163 24-56 (181)
421 cd01837 SGNH_plant_lipase_like 22.2 44 0.0011 14.0 1.2 14 102-116 33-46 (315)
422 TIGR03649 ergot_EASG ergot alk 22.1 54 0.0014 13.4 4.0 83 135-230 2-87 (285)
423 KOG0178 consensus 22.1 47 0.0012 13.8 1.4 22 181-203 68-89 (249)
424 TIGR01415 trpB_rel pyridoxal-p 22.0 54 0.0014 13.4 5.1 328 31-408 12-406 (426)
425 KOG0173 consensus 22.0 54 0.0014 13.4 2.0 130 89-227 69-215 (271)
426 pfam10165 Ric8 Guanine nucleot 22.0 54 0.0014 13.4 3.3 19 418-436 378-398 (438)
427 COG1220 HslU ATP-dependent pro 21.8 55 0.0014 13.3 4.8 146 278-428 151-328 (444)
428 pfam12575 DUF3753 Protein of u 21.8 55 0.0014 13.3 1.9 36 191-228 17-52 (72)
429 PRK00956 thyA thymidylate synt 21.7 55 0.0014 13.3 2.1 95 191-290 91-198 (208)
430 COG1780 NrdI Protein involved 21.7 55 0.0014 13.3 1.8 26 248-273 76-106 (141)
431 KOG2585 consensus 21.7 55 0.0014 13.3 3.2 20 251-271 273-294 (453)
432 KOG4827 consensus 21.6 29 0.00073 15.3 0.2 52 161-219 34-89 (279)
433 PRK00082 hrcA heat-inducible t 21.3 44 0.0011 14.0 1.1 49 143-191 107-155 (339)
434 cd01337 MDH_glyoxysomal_mitoch 21.3 56 0.0014 13.3 7.2 159 133-334 2-171 (310)
435 PRK05443 polyphosphate kinase; 21.2 24 0.0006 15.9 -0.3 114 152-267 335-472 (692)
436 TIGR01763 MalateDH_bact malate 21.1 56 0.0014 13.3 2.8 132 132-282 2-148 (308)
437 KOG4249 consensus 21.1 29 0.00074 15.3 0.1 30 253-282 162-196 (408)
438 cd03681 MM_CoA_mutase_MeaA Coe 21.1 57 0.0014 13.2 3.2 10 310-319 298-307 (407)
439 TIGR02546 III_secr_ATP type II 21.1 57 0.0014 13.2 3.4 196 121-340 142-376 (430)
440 COG1111 MPH1 ERCC4-like helica 21.1 57 0.0014 13.2 5.9 174 19-207 50-234 (542)
441 TIGR02470 sucr_synth sucrose s 21.0 53 0.0014 13.4 1.5 56 146-209 245-304 (790)
442 pfam11672 DUF3268 Protein of u 20.8 33 0.00085 14.8 0.4 16 263-278 86-101 (102)
443 TIGR01282 nifD nitrogenase mol 20.8 21 0.00052 16.3 -0.7 165 123-319 228-399 (521)
444 PRK07453 protochlorophyllide o 20.7 57 0.0015 13.2 6.3 70 132-205 7-78 (322)
445 PRK07041 short chain dehydroge 20.7 58 0.0015 13.2 5.8 70 130-204 6-77 (240)
446 PRK10538 3-hydroxy acid dehydr 20.6 58 0.0015 13.2 5.5 66 135-206 3-70 (248)
447 pfam08064 UME UME (NUC010) dom 20.5 58 0.0015 13.2 1.8 54 28-82 47-100 (107)
448 PRK07012 consensus 20.4 14 0.00036 17.5 -1.6 91 252-357 358-464 (1173)
449 cd03796 GT1_PIG-A_like This fa 20.4 58 0.0015 13.1 11.4 103 249-389 272-376 (398)
450 PRK08533 flagellar accessory p 20.3 51 0.0013 13.5 1.3 46 378-423 118-172 (230)
451 KOG2419 consensus 20.3 25 0.00063 15.8 -0.4 12 22-33 246-257 (975)
452 TIGR01854 lipid_A_lpxH UDP-2,3 20.1 59 0.0015 13.1 3.4 88 29-118 7-126 (241)
453 KOG1240 consensus 20.1 43 0.0011 14.1 0.8 15 380-394 703-722 (1431)
No 1
>PRK09225 threonine synthase; Validated
Probab=100.00 E-value=0 Score=1328.14 Aligned_cols=463 Identities=49% Similarity=0.809 Sum_probs=456.5
Q ss_pred CCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 93261789888888899986156787863286107888988998770999899999999875157899899999999986
Q gi|254780465|r 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSY 80 (469)
Q Consensus 1 M~y~STRg~~~~~~f~~a~~~Gla~DGGL~vP~~~p~~~~~~~~~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay 80 (469)
|||+||||+.+.+||+|||++|||+|||||||++||+++.++|.+|+++||+|+|++|+++|+++||++++|++||++||
T Consensus 1 Mky~STRg~~~~~sf~eal~~Gla~DGGLyvP~~~P~~~~~~l~~~~~lsy~ela~~il~~F~~~~i~~~~L~~ii~~ay 80 (465)
T PRK09225 1 MKYISTRGQAPQVSFSEAVLQGLAPDGGLYVPEELPKLSAEEIDALRGLSYAELAFEILSPFIGDDIPEDDLRAIVERAY 80 (465)
T ss_pred CCCEECCCCCCCCCHHHHHHHCCCCCCCEECCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 95543799699979899987077889940688637999999999774899999999999987147899999999999985
Q ss_pred HHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 30476678604772488254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 81 HCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 81 ~~f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
+.|++++++||+++++++||||||||||+||||+|||++|+|++|++++++++++||||||||||+||++||++++|+++
T Consensus 81 ~~f~~~~v~pl~~l~~~~~vlELfHGPT~AFKD~alq~l~~l~~~~l~~~~~~~~Il~ATSGDTG~Aa~~af~~~~~i~v 160 (465)
T PRK09225 81 TFFDHAAIAPLVQLDENLYVLELFHGPTLAFKDFALQFLAQLLEYFLKKRGEKITILGATSGDTGSAAAEAFRGKPNVRV 160 (465)
T ss_pred CCCCCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHCCCCCEEE
T ss_conf 46787765642873598279884108853112258999999999997406750699973888508999999707998089
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
+||||+|+||++||+||||+.++|||+|+|+|+|||||++||++|+|++|++++.|+|+|||||+|||||+|||||||+|
T Consensus 161 ~vlyP~g~vS~iQ~~QMtt~~~~NV~~i~v~G~FDDcQ~lVK~~f~D~~~~~~~~l~s~NSINw~Ril~QivYYf~ay~~ 240 (465)
T PRK09225 161 VILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGDFDDCQALVKAAFNDEELKEKLKLSSANSINIGRLLAQIVYYFYAYLQ 240 (465)
T ss_pred EEEECCCCCCHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 99807999997799986221799779998468767899999999719766336641321330167666789999999999
Q ss_pred HCCC-CCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 4477-887389963465788788667775089877058723676335677532220102345565642001340137889
Q gi|254780465|r 241 LGSP-NRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERL 319 (469)
Q Consensus 241 ~~~~-~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERl 319 (469)
+.+. +++|+|+|||||||||+|||+||+|||||+|||||||+||+|||||++|+|+++++++|+|||||||+|||||||
T Consensus 241 l~~~~~~~v~f~VPtGNFGni~Ag~~AkkMGLPi~~li~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERl 320 (465)
T PRK09225 241 LGKEGREKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLETGDYDPRPTVATLSPAMDISVPSNFERL 320 (465)
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCEECCCCCCCCCCHHHCCCHHHHHHH
T ss_conf 87536985699945884676899999998399875479846883668999975986145500406853423552479999
Q ss_pred HHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH
Q ss_conf 99870970899999987520265105520221100012134213889999999999986395983833999999999874
Q gi|254780465|r 320 LFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK 399 (469)
Q Consensus 320 lf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~ 399 (469)
||+++|+|+.+++++|++|+++|+++++++.++++++.|.|++|+|+||+++||++|+++||++|||||||+.|+++++.
T Consensus 321 Lf~~~~~d~~~v~~~m~~~~~~g~~~l~~~~~~~~~~~f~s~~v~D~et~~~Ik~~y~~~~yllDPHTAvg~~a~~~~~~ 400 (465)
T PRK09225 321 LFDLSGRDAARVAELMEELEEKGGFDLSDEELAALRELFGAGSVSDEETLATIREVYEEGGYLIDPHTAVAYKAAREQLR 400 (465)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHCEEEECHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHC
T ss_conf 99983898999999999988669753489999999865034776789999999999995796878737999999999760
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHH
Q ss_conf 7998399997188434988899980879888988988741721101068999999999996115
Q gi|254780465|r 400 SSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNM 463 (469)
Q Consensus 400 ~~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l~~k~e~~~~l~nd~~~ik~fI~~k~~ 463 (469)
+++.|+|+||||||+|||++|++|+|..+++|++|++|++++|++..+++|++++|+||+++..
T Consensus 401 ~~~~p~V~LATAHPaKF~~~V~~Alg~~~~lP~~L~~L~~kee~~~~i~~d~~~lK~~Il~~~~ 464 (465)
T PRK09225 401 GPGEPGVVLSTAHPAKFPEVVEEALGEEPPLPAALAGLEDRPERSTVLPADFAALKAFLLAHLR 464 (465)
T ss_pred CCCCEEEEEECCCHHHCHHHHHHHHCCCCCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 8998389996747232698999996899999889998856860677788999999999998614
No 2
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=100.00 E-value=0 Score=1294.15 Aligned_cols=456 Identities=48% Similarity=0.800 Sum_probs=447.5
Q ss_pred CEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 32617898888888999861567878632861078889889987709998999999998751578998999999999863
Q gi|254780465|r 2 KYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYH 81 (469)
Q Consensus 2 ~y~STRg~~~~~~f~~a~~~Gla~DGGL~vP~~~p~~~~~~~~~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~ 81 (469)
||+||||+++.+||+||+++|||+|||||||++||+++.+++..|+++||.|+|++|+++|+++||++++|++||++||+
T Consensus 1 ky~STRg~~~~~sF~eall~Gla~DGGLyvP~~~P~l~~~~l~~~~~~sy~ela~~il~~f~~~~i~~~~L~~ii~~ay~ 80 (460)
T cd01560 1 KYVSTRGGNPGVSFSEALLSGLAPDGGLYVPEELPKLSAEEIASWSGLSYQELAFEVLSLFIGDEIPEDDLKSLIDRAYS 80 (460)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC
T ss_conf 97518995899798999973778999416787479899999997758899999999999970577999999999999724
Q ss_pred HCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEE
Q ss_conf 04766786047724882546621389812068238889999999973179820799716654046799986166785599
Q gi|254780465|r 82 CFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMY 161 (469)
Q Consensus 82 ~f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~ 161 (469)
.|++++++||++|+++.|+||||||||+||||+|||++|+|++|++++++++++||||||||||+||++||+|++|++++
T Consensus 81 ~f~~~~~~pl~~l~~~~~vLELFHGPTlAFKD~a~q~l~~l~~~~l~~~~~~~~Il~ATSGDTGsAai~af~~~~~i~v~ 160 (460)
T cd01560 81 FFRHPDIAPLVQLGDNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVV 160 (460)
T ss_pred CCCCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEE
T ss_conf 56777666338814984788732288414455689999999999974066347998578884189999999747883499
Q ss_pred EECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH
Q ss_conf 97357767603321311344787089971796588899999975015431358311345565444011055899999874
Q gi|254780465|r 162 ILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIAL 241 (469)
Q Consensus 162 vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~ 241 (469)
||||+|+||++||+||||..++|||+++|+|+|||||++||++|+|++|++++.|+|+|||||+|||||+|||||||+|+
T Consensus 161 iLyP~g~vS~iQ~~QMtT~~~~NV~~iav~G~FDDcQ~~VK~~f~D~~~~~~~~l~s~NSINw~Rll~QivYYf~ay~~l 240 (460)
T cd01560 161 VLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSANSINWARILAQIVYYFYAYLQL 240 (460)
T ss_pred EECCCCCCCHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 94488889988999862547897799996488088899999996078664367254115400355667899999999997
Q ss_pred CCC--CCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCC-CCCCCCCCCCCCCCHHHHHH
Q ss_conf 477--887389963465788788667775089877058723676335677532220102-34556564200134013788
Q gi|254780465|r 242 GSP--NRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPE-IVMETTSPAMDIQIPSNFER 318 (469)
Q Consensus 242 ~~~--~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~-~~~~T~SpsMDI~v~SNfER 318 (469)
... +++|+|+|||||||||+|||+||+|||||+|||||||+||+|+|||++|+|+++ ++++|+|||||||+||||||
T Consensus 241 ~~~~~~~~v~f~VPTGNFGni~Ag~~Ak~MGLPI~~li~AtN~Ndil~r~~~tG~y~~~~~v~~T~SpsMDI~~~SNfER 320 (460)
T cd01560 241 LKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDILKSSNFER 320 (460)
T ss_pred HHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 54048980499935886020699999998399977088866862149999737960456543334686343146623999
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 99987097089999998752026510552022110001213421388999999999998639598383399999999987
Q gi|254780465|r 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR 398 (469)
Q Consensus 319 llf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~ 398 (469)
|||+++|+|+.+++++|++|+++|.++++++.++++++.|.|++++|+||+++||++|+++||++|||||||+.|+++++
T Consensus 321 ll~~~~~~d~~~~~~~m~~f~~~g~~~l~~~~~~~l~~~f~s~s~~d~et~~~I~~~~~~~~yliDPHTAvg~~a~~~~~ 400 (460)
T cd01560 321 LLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVR 400 (460)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHH
T ss_conf 99998089678999999876217984359999999854716665377999999999999679687874799999999986
Q ss_pred HCCCCCEEEEECCCCCCCHHHHHHHHCCCC-CCCHHHHHHHCCCCCEEECCCCHHHHHHH
Q ss_conf 479983999971884349888999808798-88988988741721101068999999999
Q gi|254780465|r 399 KSSSTPMVTLATAHPSKFPDTVKAASGIVP-DCPISLEQMMRRPENCKVMNKNIDEIKKF 457 (469)
Q Consensus 399 ~~~~~p~VvLATAHPaKFpe~V~~Aig~~~-~~P~~L~~l~~k~e~~~~l~nd~~~ik~f 457 (469)
.+++.|+|+||||||+|||++|++|+|..+ ++|++|++|++++|+++.|++|++++|+|
T Consensus 401 ~~~~~p~v~LaTAHPaKF~~~V~~A~g~~~~~lP~~L~~L~~k~e~~~~l~~d~~~vk~y 460 (460)
T cd01560 401 KSPGTPGVVLSTAHPAKFPEAVKEALGEEPVELPEELEGLEDLEKRHEDLLADKELLKSH 460 (460)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEECCCCHHHHHCC
T ss_conf 289980799956582445889999867998769989987737631356788999998467
No 3
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=739.04 Aligned_cols=404 Identities=37% Similarity=0.510 Sum_probs=372.0
Q ss_pred CCEECCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 93261789888888899986156787863286107888988998770999899999999875157899899999999986
Q gi|254780465|r 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSY 80 (469)
Q Consensus 1 M~y~STRg~~~~~~f~~a~~~Gla~DGGL~vP~~~p~~~~~~~~~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay 80 (469)
|+|+|||+.....+|+++++.|+++|||||+|+.+|.++..++..|..++|+++++++++.|..++++..+|.+.+..+|
T Consensus 1 m~~~~~rc~~cg~~f~~a~~~~~c~~cGl~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~l~eg~tp~~ 80 (411)
T COG0498 1 MKYVSLRCLKCGREFSQALLQGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLELLPVGEIPAVSLGEGGTPLY 80 (411)
T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCC
T ss_conf 95257534777756656776075777886166205763355655665164310499999877788765524641147550
Q ss_pred HHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 30476678604772488254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 81 HCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 81 ~~f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
.. ++...||...+.++|++|||||||+||||+|||++++++.+... .+|+|||||||| |+++||+++.++++
T Consensus 81 ~~--~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTg-As~aaya~rag~~v 152 (411)
T COG0498 81 KA--PALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTG-ASAAAYAARAGLKV 152 (411)
T ss_pred CC--CCCCHHHCCCCCCEEHHHHCCCCCCCHHHHHHHHHHHHHHHHCC-----CEEEEECCCHHH-HHHHHHHCCCCCEE
T ss_conf 68--65212325677632333313599742265259999999998368-----789995886489-99999853579849
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
+||||+||||+.|+.||++..+ |+++|+|+|||||.+||++|.+.. + ++++|||||+||++|++|||++|.|
T Consensus 153 ~Vl~P~g~vs~~k~~q~~~~ga---~~i~v~G~fDda~~~vk~~~~~~~----~-~~~~nsiNp~rlegq~t~~fe~~~q 224 (411)
T COG0498 153 FVLYPKGKVSPGKLAQMLTLGA---HVIAVDGNFDDAQELVKEAANREG----L-LSAVNSINPYRLEGQKTYAFEIAEQ 224 (411)
T ss_pred EEEECCCCCCHHHHHHHHHCCC---EEEEECCCHHHHHHHHHHHHHHCC----C-EEECCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9994598788788999975388---899975968999999999996179----5-4313546787853225468499998
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCC---CCCCCCCCCCCCCHHHHH
Q ss_conf 44778873899634657887886677750898770587236763356775322201023---455656420013401378
Q gi|254780465|r 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI---VMETTSPAMDIQIPSNFE 317 (469)
Q Consensus 241 ~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~---~~~T~SpsMDI~v~SNfE 317 (469)
+.. ..|++|+||+|||||++|+|.|++||+|++++++++|.|+++++++++|.|..++ ...|+||||||++|+|||
T Consensus 225 l~~-~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~p~n~~ 303 (411)
T COG0498 225 LGW-KAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGNPSNWE 303 (411)
T ss_pred HCC-CCCCEEEEECCCHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 378-9987699967862889999999984452551330745655367541525543023556655236001047878899
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH
Q ss_conf 89998709708999999875202651055202211000121342138899999999999863959838339999999998
Q gi|254780465|r 318 RLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALAC 397 (469)
Q Consensus 318 Rllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~ 397 (469)
|+++.+.++. | .+.+|||+||+++||.++++.||++|||||+++++++++
T Consensus 304 r~l~a~~es~--------------g----------------~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~ 353 (411)
T COG0498 304 RALFALRESG--------------G----------------LAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKL 353 (411)
T ss_pred HHHHHHHHCC--------------C----------------CEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999998518--------------9----------------659837899999999999847915475079999999999
Q ss_pred HH---CCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 74---7998399997188434988899980879888988988741721101068999999999996
Q gi|254780465|r 398 RK---SSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKK 460 (469)
Q Consensus 398 ~~---~~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l~~k~e~~~~l~nd~~~ik~fI~~ 460 (469)
+. +.+.++|++.||||+|||++|+++ |..+..+..+++++.. ++.++++.+|.+
T Consensus 354 ~~~~i~~~~~vV~v~Tg~~~K~~~~v~~~-------~~~~~~~~~~~~~~~~--~~~~~l~~~~~~ 410 (411)
T COG0498 354 REKIIDPDETVVLVLTGHGLKFPDTVEEA-------PAELAEIPELPLRVED--ADLEALKKYILQ 410 (411)
T ss_pred HHHHCCCCCEEEEEECCCCCCCHHHHHHC-------CCCCCCCCCCCCCCCC--CCHHHHHHHHHC
T ss_conf 98614889709999547744576677751-------4430013220024775--369999999723
No 4
>TIGR00260 thrC threonine synthase; InterPro: IPR004450 Threonine synthase () is involved in threonine biosynthesis. It catalyses the conversion of O-phospho-L-homoserine and water into L-threonine and orthophosphate, using pyridoxal phosphate as a cofactor. The pyridoxal-phosphate binding site is a Lys (K) residue. The enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes .; GO: 0004795 threonine synthase activity, 0009088 threonine biosynthetic process.
Probab=100.00 E-value=0 Score=634.28 Aligned_cols=372 Identities=34% Similarity=0.456 Sum_probs=329.2
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHCCCCCCCEE-EECCC---CCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 7515789989999999998630476678604-77248---8254662138-98120682388899999999731798207
Q gi|254780465|r 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPL-IQLNA---NEFLLELFHG-PTLSFKDIAMQFIAELMDHILEERDHYIT 135 (469)
Q Consensus 61 ~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl-~~l~~---~~~vlELfHG-PT~aFKD~a~q~l~~~~~~~l~~~~~~~~ 135 (469)
.|++-.+++.++..+....|..|+.+.+.|| .+|+. ++||+||||| ||+||||+|+|||+.++.++++...++++
T Consensus 6 ~~Lp~~~D~~~~~~L~~g~t~~~~~~~~~Plv~~~g~~~~~lyvk~~~~n~PT~sFKD~gl~fm~~~~~~a~e~g~~~~~ 85 (423)
T TIGR00260 6 EFLPVTIDEKDLVTLGEGVTPLFRAPALAPLVEELGLDKKNLYVKELGHNMPTLSFKDRGLQFMAVAVTKALELGNDKIT 85 (423)
T ss_pred HHCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHEEEEECCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCEEE
T ss_conf 14588988654587842775321266512578875323230133223568984023200002799999999737982589
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHC---
Q ss_conf 99716654046799986166785599973577676033213113447870899717965888999999750154313---
Q gi|254780465|r 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCH--- 212 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~--- 212 (469)
|+||||||||+|+++|+++++|++++||||.||||++|+.||++....|+.+++|+|||||||++||++|.|.+.+.
T Consensus 86 v~cAstGnT~aa~a~a~aa~~g~~~~vl~P~Gki~p~Q~~Kl~~~~~~n~~v~~i~G~FDda~~~v~~~~~D~e~~~nea 165 (423)
T TIGR00260 86 VLCASTGNTGAAAAHAYAAKAGLKVVVLYPAGKISPLQLGKLAQALIYNAKVIAIDGNFDDAQRLVKELFEDVEDKENEA 165 (423)
T ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 99765652689999999613898799983288533302153013323783899982787999999999861111352468
Q ss_pred ----CCCCCCCCCCCHHHCCCCH-HHHHHHHHHHCC----CCCCEEEEEE-CCCHHHHHHHHHHHHCC-----CCCCEEE
Q ss_conf ----5831134556544401105-589999987447----7887389963-46578878866777508-----9877058
Q gi|254780465|r 213 ----SVNLSGINSINWARIMAQI-VYYFVSSIALGS----PNRNISFSVP-TGNFGDIFAGYMAKMMG-----LPIEKLI 277 (469)
Q Consensus 213 ----~~~l~s~NSIN~~Ril~Q~-vyYf~a~~~~~~----~~~~i~f~VP-tGNfGni~Ag~~Ak~MG-----LPI~kli 277 (469)
.+.|.|+|||||.|+++|+ .|||...-|+.. ..+.|.++|| +||||+|++||.+++|+ |||.+.-
T Consensus 166 l~~~~~~lns~Ns~Np~R~egQ~~~~~FE~~~~l~~Gai~~pd~v~~pV~n~GNf~~~~~GF~~~~~~G~~D~lPi~~~~ 245 (423)
T TIGR00260 166 LKASILLLNSVNSINPYRLEGQKVTYAFEIVEQLGWGAIEAPDKVVVPVPNSGNFGAIWKGFKEKKEVGLIDSLPIKKRG 245 (423)
T ss_pred HHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf 77523001000023378899999999999999828962237854799658805689999999999870884366723575
Q ss_pred E-ECCCCCHHHHHHHCCCHHCCCCC---CCCCCCCCCCCHHHHHHHHH--HHHCC---------CHHHHHHHHHHHCCCC
Q ss_conf 7-23676335677532220102345---56564200134013788999--87097---------0899999987520265
Q gi|254780465|r 278 I-ATNENDTLVRMFDMGMYRPEIVM---ETTSPAMDIQIPSNFERLLF--EISGR---------NSLLVKEAFYSLENKK 342 (469)
Q Consensus 278 ~-AtN~NdiL~rf~~tG~y~~~~~~---~T~SpsMDI~v~SNfERllf--~l~~~---------d~~~v~~~m~~l~~~g 342 (469)
+ |++.+||+.+|.++|.+.+.... +|+||||||+.|+|++|.++ ++..+ .++.|+.|+++++.++
T Consensus 246 ~~a~g~~p~~~~f~~~~~~~~~~~~kva~T~a~Ai~Ig~P~n~~~a~~sl~~~~~~~g~~~~~~~Geivnnwfqelkt~~ 325 (423)
T TIGR00260 246 IQAEGAAPIVRAFLESGDIEPIENPKVAETIATAIDIGNPANWERALESLYAARRSNGNAEDVGEGEIVNNWFQELKTEK 325 (423)
T ss_pred ECCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 31468605789875056643024402788778888506887889999999898860443245545514687888752167
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH----CCCEECCCHHHHHHHHHHHHHCC---CCCEEEEECCCCCC
Q ss_conf 105520221100012134213889999999999986----39598383399999999987479---98399997188434
Q gi|254780465|r 343 YFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK----SNYLVDPHTAVGIHAALACRKSS---STPMVTLATAHPSK 415 (469)
Q Consensus 343 ~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~----~gyiiDPHTAvG~~aa~~~~~~~---~~p~VvLATAHPaK 415 (469)
.|.++++.++.+++.|++.+++|+||++++|.++++ .||++|||||+++.|.+|....+ ....|.|+||||+|
T Consensus 326 ~~~~~~~~~~~~~~~F~~~~~~D~E~~e~~k~~~~~svnP~G~~~EPa~A~~v~~l~kl~~~g~dks~~~i~L~~~~~~K 405 (423)
T TIGR00260 326 KYALDKKILELLSKDFSSESVSDEEILEAIKLLARESVNPEGIFVEPASAVSVAALKKLVEKGEDKSLVGIFLATADPAK 405 (423)
T ss_pred CEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHH
T ss_conf 10016899965430220102662889999999999732987225336588999999998743888246564420016768
Q ss_pred CHHHHH-HHHCCCCCCCH
Q ss_conf 988899-98087988898
Q gi|254780465|r 416 FPDTVK-AASGIVPDCPI 432 (469)
Q Consensus 416 Fpe~V~-~Aig~~~~~P~ 432 (469)
|+++|. -.+|...+.|+
T Consensus 406 F~~~V~~~ltG~~l~~~e 423 (423)
T TIGR00260 406 FERVVCLVLTGNGLKDPE 423 (423)
T ss_pred HHHHHHHHHCCCCCCCCC
T ss_conf 899998876056457899
No 5
>KOG2616 consensus
Probab=100.00 E-value=0 Score=491.63 Aligned_cols=254 Identities=39% Similarity=0.631 Sum_probs=235.9
Q ss_pred CEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 55999735776760332131134478708997179658889999997501543135831134556544401105589999
Q gi|254780465|r 158 INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVS 237 (469)
Q Consensus 158 i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a 237 (469)
+.|++|+|+|+||++||.||||+...|||+++|+|+||+||.+||.+|.|.+|
T Consensus 1 ~~V~il~p~g~~s~iqE~qmttv~d~nv~~~~v~g~~d~~~d~vk~if~d~~f--------------------------- 53 (266)
T KOG2616 1 VSVFILLPKGRCSPIQELQMTTVLDQNVHVFGVEGNFDECQDPVKTIFGDVEF--------------------------- 53 (266)
T ss_pred CCEEEECCCCCCCHHHHCCEEEEECCCEEEEEEEEEECCCCCHHHHHHHHHHH---------------------------
T ss_conf 95268634776371665260341158704998730011112468888777899---------------------------
Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCCCCCCHHHH
Q ss_conf 987447788738996346578878866777508987705872367633567753222010-2345565642001340137
Q gi|254780465|r 238 SIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAMDIQIPSNF 316 (469)
Q Consensus 238 ~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsMDI~v~SNf 316 (469)
| ||||||+||+||||+||||+||+++|.|+. +++..|+||||||++||||
T Consensus 54 ----------------------------a-kmGlPirklviAtNeNdIl~rf~ktG~yelsekvaaT~spamDIlvssN~ 104 (266)
T KOG2616 54 ----------------------------A-KMGLPIRKLVIATNENDILHRFVKTGDYELSEKVAATLSPAMDILVSSNF 104 (266)
T ss_pred ----------------------------H-HCCCCHHHEEEECCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHCCCCCH
T ss_conf ----------------------------8-81874445045506307899998717602667788640840340102139
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHH
Q ss_conf 88999870970899999987520265105520221100012134213889999999999986395983833999999999
Q gi|254780465|r 317 ERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALA 396 (469)
Q Consensus 317 ERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~ 396 (469)
||.||++.+.|+..+++||++|+.+|+|+++++.+++++++|.|.||+++||.++|+++|+..+|++|||||||+.+..+
T Consensus 105 ER~lwlla~~d~qi~~~l~nefe~~~~~qv~kel~ekls~dftse~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r 184 (266)
T KOG2616 105 ERVLWLLAGSDSQITRALMNEFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYR 184 (266)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEECCCHHHHHHHHHH
T ss_conf 99999981775899999999985278540389999998876666661758899999977505874666722878888999
Q ss_pred HH--HCCCCCEEEEECCCCCCCHHHHHHHHCC--------CCCCCHHHHHHHCCCCCE-EECCCCHHHHHHHHHHHHHHH
Q ss_conf 87--4799839999718843498889998087--------988898898874172110-106899999999999611552
Q gi|254780465|r 397 CR--KSSSTPMVTLATAHPSKFPDTVKAASGI--------VPDCPISLEQMMRRPENC-KVMNKNIDEIKKFIKKRNMES 465 (469)
Q Consensus 397 ~~--~~~~~p~VvLATAHPaKFpe~V~~Aig~--------~~~~P~~L~~l~~k~e~~-~~l~nd~~~ik~fI~~k~~~~ 465 (469)
.. ..++.|.+||||||||||+++|..|+.. .+..|+.+..++.++.+. ....+|++.+|.-|++.....
T Consensus 185 ~idkt~ps~~~i~lstAh~aKFa~AV~~Al~~~~s~yn~~~~~h~~~l~~l~~~ek~~~~~~radie~lk~~ie~~~~n~ 264 (266)
T KOG2616 185 QIDKTQPSIPYICLSTAHPAKFAEAVNAALSTPESPYNFVALVHPEELCTLMRREKNWMFMLRADIEDLKRQIESHLLNT 264 (266)
T ss_pred HHHCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCHHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 98512898766882456754606999998358888731253106999999986523331220241999999999998741
Q ss_pred CC
Q ss_conf 05
Q gi|254780465|r 466 KI 467 (469)
Q Consensus 466 ~~ 467 (469)
++
T Consensus 265 ~~ 266 (266)
T KOG2616 265 KQ 266 (266)
T ss_pred CC
T ss_conf 39
No 6
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.4e-31 Score=239.34 Aligned_cols=306 Identities=25% Similarity=0.303 Sum_probs=229.9
Q ss_pred CCCCEEEECC--------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 6786047724--------88254662138981206823888999999997317982079971665404679998616678
Q gi|254780465|r 86 AAVTPLIQLN--------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKR 157 (469)
Q Consensus 86 ~~~~pl~~l~--------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~ 157 (469)
.--+||.+.. .++|+=-=+..||+||||.++.... .++.+. + .-.|++||||++|.|++ ++....+
T Consensus 68 eG~TPL~~~~~L~~~lG~~~l~~K~E~~nPTGSfKDRg~~~~v---~~a~~~-G-~~~vv~aSsGN~g~a~A-ayaa~~G 141 (400)
T PRK06260 68 EGGTPLYKCPNLGKELGVKELYVKHEGANPTGSFKDRGMTVGV---TKALEL-G-VKTVACASTGNTSASLA-AYAARAG 141 (400)
T ss_pred CCCCCEEECHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHH---HHHHHC-C-CCEEEEECCCCHHHHHH-HHHHHCC
T ss_conf 9978638835769982997089973687875156772799999---999983-9-98799827982799999-9999839
Q ss_pred CEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 55999735776760332131134478708997179658889999997501543135831134556544401105589999
Q gi|254780465|r 158 INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVS 237 (469)
Q Consensus 158 i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a 237 (469)
+++.|+.|.+.++.-+..||.... ..++.|+|++|||+.+++++..+ .....+||+|+.|+.+|.+..+..
T Consensus 142 l~~~I~vP~~~~~~~kl~q~~~~G---A~vv~v~g~~d~a~~~~~~~~~~------~~~y~~~~~nP~~ieG~kTi~~Ei 212 (400)
T PRK06260 142 LKCYVLLPAGKVALGKLAQALLHG---AKVIEIDGNFDDALDMVVELALE------GEIYLLNSINPFRLEGQKTIAFEI 212 (400)
T ss_pred CCEEEEEECCCCCHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHH------CCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 977999858866188999999729---86898278899999999999975------877851145874333066899999
Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHH----HHCCC--CCCEEEEECCCC-CHHHHHHHCCC--HHCCCCCCCCCCCC
Q ss_conf 98744778873899634657887886677----75089--877058723676-33567753222--01023455656420
Q gi|254780465|r 238 SIALGSPNRNISFSVPTGNFGDIFAGYMA----KMMGL--PIEKLIIATNEN-DTLVRMFDMGM--YRPEIVMETTSPAM 308 (469)
Q Consensus 238 ~~~~~~~~~~i~f~VPtGNfGni~Ag~~A----k~MGL--PI~kli~AtN~N-diL~rf~~tG~--y~~~~~~~T~SpsM 308 (469)
+-|+.. .-|-.++||+|+-||+.+.|-+ +.+|+ ++-|++++-.++ +.+.+.+..|. +.+.+...|++.++
T Consensus 213 ~eQl~~-~~PD~vvvPvG~G~~l~Gi~~gf~el~~~G~i~~~Prl~~vQa~g~~pi~~a~~~g~~~~~~~~~~~TiA~~i 291 (400)
T PRK06260 213 YDQLDG-EVPDRVILPVGNAGNISAIWKGFKELKELGLIDKLPKMTGIQAEGAAPIVKAIKEGLEEIEPEENPETVATAI 291 (400)
T ss_pred HHHHCC-CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCEECCCCCCCEEEEE
T ss_conf 998268-8999899954837899999999999986576665662034135687658999974998221025898435578
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHH
Q ss_conf 01340137889998709708999999875202651055202211000121342138899999999999863959838339
Q gi|254780465|r 309 DIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTA 388 (469)
Q Consensus 309 DI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTA 388 (469)
.|+.|.|+.+.+-.+ ++.+ =....|+|+|+++.++.+..+.|++++|.+|
T Consensus 292 ~i~~p~~~~~~l~al---------------~~s~---------------G~~v~VtD~ei~~A~~~La~~eGi~vEpasA 341 (400)
T PRK06260 292 RIGNPVNAPKALRAI---------------RESG---------------GTAESVSDEEILAAQRLLARKEGIGVEPASA 341 (400)
T ss_pred EECCCCCHHHHHHHH---------------HHHC---------------CEEEEECHHHHHHHHHHHHHHCCEEECCHHH
T ss_conf 836888879999999---------------9839---------------9899988999999999999748906783689
Q ss_pred HHHHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHH
Q ss_conf 999999998747----9983999971884349888999808798889889887
Q gi|254780465|r 389 VGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQM 437 (469)
Q Consensus 389 vG~~aa~~~~~~----~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l 437 (469)
+++++++++... .+..+|++-|+|..|.|++|.++++..+.+|+.++.+
T Consensus 342 ~alAgl~kl~e~G~i~~~~~VV~~lTG~GlKD~~~v~~~~~~~~~i~p~~~~~ 394 (400)
T PRK06260 342 ASVAGLIKLVEMGVIDKDEKVVCVTTGHLLKDPDAVIKACEEPIPVEPDIEAL 394 (400)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHCCCCEEECCCHHHH
T ss_conf 99999999997399999997999907887689899998479981558599999
No 7
>PRK07591 threonine synthase; Validated
Probab=99.97 E-value=6e-28 Score=214.13 Aligned_cols=308 Identities=15% Similarity=0.171 Sum_probs=228.3
Q ss_pred CCCEEEECC--------CCCEEEEECCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 786047724--------88254662138-981206823888999999997317982079971665404679998616678
Q gi|254780465|r 87 AVTPLIQLN--------ANEFLLELFHG-PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKR 157 (469)
Q Consensus 87 ~~~pl~~l~--------~~~~vlELfHG-PT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~ 157 (469)
.-+||.+.. +++|+-.=... ||+||||.+|... +.+..+..-+ .|+|||||++|+|++ ++..+.+
T Consensus 89 G~TPL~~~~~l~~~lG~~~l~~K~E~~N~PTGSFKDRg~~~~---vs~a~~~G~~--~vv~aSsGNagas~A-ayaA~aG 162 (422)
T PRK07591 89 GFTPLVKADRLARRLGLKNLYIKDDSVNMPTLSFKDRVVSVA---LTAARELGFT--TVSCASTGNLANSVA-AIAAHAG 162 (422)
T ss_pred CCCCCEECHHHHHHHCCCCEEEECCCCCCCCCCHHHCCHHHH---HHHHHHCCCC--EEEECCCCCHHHHHH-HHHHHCC
T ss_conf 987117725769872986479814787689868676149999---9999982999--899818997899999-9999839
Q ss_pred CEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCC-CCCHHHCCCCHHHHHH
Q ss_conf 559997357767603321311344787089971796588899999975015431358311345-5654440110558999
Q gi|254780465|r 158 INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGIN-SINWARIMAQIVYYFV 236 (469)
Q Consensus 158 i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~N-SIN~~Ril~Q~vyYf~ 236 (469)
++++|+-|++ ++.....||.... ..++.|+|+||||..+++++-.+..+ ..+| +.|..|+.+|...-|.
T Consensus 163 i~~~I~vP~~-~~~~K~~q~~~yG---A~vv~v~G~~dda~~~~~~~a~~~g~------~~~n~~~~P~~iEG~KTia~E 232 (422)
T PRK07591 163 LDCCVFIPAD-LEAGKVVGTLVYG---PTLVAVEGNYDDVNRLCSEVANTYGW------GFVNINLRPYYSEGSKTLGYE 232 (422)
T ss_pred CCEEEEEECC-CCHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHHCCC------EEECCCCCCCHHHHHHHHHHH
T ss_conf 9569993088-8888999898569---98999379888999999999986496------221466782253326689999
Q ss_pred HHHHHCCCCCCEEEEEECCCHHHHHHHHHHH----HCCC----CCCEEEEEC-CCCCHHHHHHHCCCH-HCCCCCCCCCC
Q ss_conf 9987447788738996346578878866777----5089----877058723-676335677532220-10234556564
Q gi|254780465|r 237 SSIALGSPNRNISFSVPTGNFGDIFAGYMAK----MMGL----PIEKLIIAT-NENDTLVRMFDMGMY-RPEIVMETTSP 306 (469)
Q Consensus 237 a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak----~MGL----PI~kli~At-N~NdiL~rf~~tG~y-~~~~~~~T~Sp 306 (469)
.+-|+.- .-|-.++||+||-|++.+.|-+- .+|+ |. ||+++- --.+.+.+.|..|.- .......|++.
T Consensus 233 i~eqlg~-~~PD~vvvPvG~G~~l~Gi~kgf~eL~~~G~i~~~Pp-rli~vQa~g~~Pi~~A~~~g~~~~~~~~~~TiA~ 310 (422)
T PRK07591 233 VAEQLGW-RLPDQVVAPLASGSLLTKIYKGFQELIKVGLVEDKPV-RFSGAQAEGCSPIAQAFKEGRDFVAPVKPNTIAK 310 (422)
T ss_pred HHHHCCC-CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC-EEEEEECCCCCHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 9998199-9998599835873179999999999997187578886-2899824887779999975996668768874010
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCC
Q ss_conf 20013401378899987097089999998752026510552022110001213421388999999999998639598383
Q gi|254780465|r 307 AMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPH 386 (469)
Q Consensus 307 sMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPH 386 (469)
++-|..|.+..+.|- .+++.+. ....|+|+|+++.++.+.+..|++++|.
T Consensus 311 ~I~ig~P~~~~~~l~---------------avr~sgG---------------~~v~VsD~Ei~~A~~~La~~eGi~vEpa 360 (422)
T PRK07591 311 SLAIGNPADGPYALD---------------IARRTGG---------------AIEDVTDEEIIEGIKLLARTEGIFTETA 360 (422)
T ss_pred EEEECCCCCHHHHHH---------------HHHHHCC---------------EEEEECHHHHHHHHHHHHHHCCEEECCC
T ss_conf 245079888899999---------------9998699---------------8999889999999999997389777860
Q ss_pred HHHHHHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHH
Q ss_conf 39999999998747----99839999718843498889998087988898898874172110106899999999999
Q gi|254780465|r 387 TAVGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIK 459 (469)
Q Consensus 387 TAvG~~aa~~~~~~----~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l~~k~e~~~~l~nd~~~ik~fI~ 459 (469)
+|+++++++++... .+..+|++-|.|-.|-|++|.+.++..+.+ ++|+++++.-++
T Consensus 361 sA~alAgl~kl~e~G~i~~de~VV~~lTG~GLKd~~~~~~~~~~~~~i-----------------~~~~~~~~~~~~ 420 (422)
T PRK07591 361 GGTTVAVLKKLVEAGKIDPDETTVVYITGNGLKTLEAVQGTVGEPATI-----------------KPSLESFERALL 420 (422)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCEE-----------------CCCHHHHHHHHH
T ss_conf 899999999999769999999499990887667889998637999246-----------------859999999983
No 8
>PRK08197 threonine synthase; Validated
Probab=99.97 E-value=2.1e-27 Score=210.40 Aligned_cols=293 Identities=20% Similarity=0.206 Sum_probs=215.3
Q ss_pred CCCEEEECC--------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 786047724--------882546621389812068238889999999973179820799716654046799986166785
Q gi|254780465|r 87 AVTPLIQLN--------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRI 158 (469)
Q Consensus 87 ~~~pl~~l~--------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i 158 (469)
--+||.+.. +++|+=-=+..||+||||.+|.... .++.+.. ...|++||||+||.|++ ++..+.++
T Consensus 77 G~TPL~~~~~l~~~lG~~~l~~K~E~~nPTGSFKDRg~~~~v---s~a~~~g--~~~vv~aSsGN~g~s~A-ayaa~~Gi 150 (402)
T PRK08197 77 GMTPLIPLPKLGKTIGIGNLWVKDEGLNPTGSFKARGLAVGV---SMAKELG--IKHLAMPTNGNAGAAWA-AYAARAGI 150 (402)
T ss_pred CCCCCEEHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH---HHHHHCC--CCEEEEECCCCHHHHHH-HHHHHCCC
T ss_conf 987625125799871996189951575887641787799999---9999729--65278645886689999-99998099
Q ss_pred EEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 59997357767603321311344787089971796588899999975015431358311345565444011055899999
Q gi|254780465|r 159 NMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSS 238 (469)
Q Consensus 159 ~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~ 238 (469)
+++|+-|++ ++.....||... | .+++.|+|+||||..++.+...+..+ +.+ -+..|..|+.+|...-|..+
T Consensus 151 ~~~I~~P~~-~~~~k~~~~~~y-G--A~vv~v~g~~~da~~~~~~~~~~~g~---~~~--~~~~nP~~ieG~kTia~Ei~ 221 (402)
T PRK08197 151 EATIFMPQD-APEANRLECALY-G--AHVYLVDGLISDCGKIVAEGKAKYGW---FDV--STLKEPYRIEGKKTMGLELA 221 (402)
T ss_pred CEEEEEECC-CHHHHHHHHHHH-C--CEEEEECCCHHHHHHHHHHHHHHCCC---CCC--CCCCCCCHHHHHHHHHHHHH
T ss_conf 669997378-618779999960-9--89999589799999999999987298---335--57787420123667999999
Q ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHHH----HCCC---CCCEEEEECCC-CCHHHHHHHCCCHHCC--CCCCCCCCCC
Q ss_conf 87447788738996346578878866777----5089---87705872367-6335677532220102--3455656420
Q gi|254780465|r 239 IALGSPNRNISFSVPTGNFGDIFAGYMAK----MMGL---PIEKLIIATNE-NDTLVRMFDMGMYRPE--IVMETTSPAM 308 (469)
Q Consensus 239 ~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak----~MGL---PI~kli~AtN~-NdiL~rf~~tG~y~~~--~~~~T~SpsM 308 (469)
-|+.- .-|-.++||+||-|++++-|-+- .+|+ ++-|++++-.+ .+.+.+.+..|.-... +...|++.++
T Consensus 222 eQlg~-~~PD~vvvPvG~G~~l~Gi~kgf~el~~~G~I~~~~Prli~vQa~g~~pi~~a~~~g~~~~~~~~~~~TiA~gi 300 (402)
T PRK08197 222 EQLGW-ELPDVILYPTGGGVGLIGMWKAFDELEALGWIGGKRPRMVAVQAEGCAPIVKAWEEGKRESEFWPDAHTVASGI 300 (402)
T ss_pred HHHCC-CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCHHHEECCC
T ss_conf 99389-99998999789838899999999999864654677761687347775489988860886554467612100000
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHH
Q ss_conf 01340137889998709708999999875202651055202211000121342138899999999999863959838339
Q gi|254780465|r 309 DIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTA 388 (469)
Q Consensus 309 DI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTA 388 (469)
.|..|-+....+-- +++.+. ....|+|+|+++.++.+.++.|++++|.+|
T Consensus 301 ~i~~p~~~~~~l~a---------------v~~s~G---------------~~v~VsD~Ei~~A~~~La~~eGi~~EpasA 350 (402)
T PRK08197 301 RVPKALGDFLVLDA---------------VRESGG---------------CAIAVDDEAILAALSELAREEGLFACPEGA 350 (402)
T ss_pred CCCCCCCHHHHHHH---------------HHHHCC---------------EEEEECHHHHHHHHHHHHHHCCEEECCHHH
T ss_conf 27898876999999---------------998699---------------899989999999999999855927773699
Q ss_pred HHHHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHHHC
Q ss_conf 999999998747----9983999971884349888999808
Q gi|254780465|r 389 VGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASG 425 (469)
Q Consensus 389 vG~~aa~~~~~~----~~~p~VvLATAHPaKFpe~V~~Aig 425 (469)
+++++++++.+. .+..+|++.|+|-.|+||+|..++.
T Consensus 351 ~alAgl~kl~e~G~i~~~~~VV~~lTG~GlKd~d~v~~~~p 391 (402)
T PRK08197 351 AALAAAKQLRESGWLKSGERVVLFNTGTGLKYPDAVPVVPP 391 (402)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCC
T ss_conf 99999999998299999996999908886677777654356
No 9
>PRK05638 threonine synthase; Validated
Probab=99.95 E-value=1.5e-25 Score=197.47 Aligned_cols=283 Identities=20% Similarity=0.214 Sum_probs=207.1
Q ss_pred CCCCEEEEC------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 678604772------48825466213898120682388899999999731798207997166540467999861667855
Q gi|254780465|r 86 AAVTPLIQL------NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 86 ~~~~pl~~l------~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
+.-+||.+. +-++|+--=+..||+||||.||.+.. .++++..-+ .|+|||||++|+|+ +|+..+.+++
T Consensus 65 EG~TPLv~~~l~~~lG~~l~~K~E~~NPTGSFKDRg~svav---s~A~~~G~~--~vv~aStGNagaS~-AaYaA~aGl~ 138 (443)
T PRK05638 65 EGGTPLIRARISEKLNVNVYIKDETRNPTGSFRDRLATVAV---SYGLPYASN--GFVVASDGNAAASV-AAYSARAGKE 138 (443)
T ss_pred CCCCCCEECCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHH---HHHHHHCCC--EEEECCCCCHHHHH-HHHHHHHCCC
T ss_conf 99882544523265297599960787997571662699999---999980988--36870688889999-9999980997
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCC-CCHHHCCCCHHHHHHHH
Q ss_conf 99973577676033213113447870899717965888999999750154313583113455-65444011055899999
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINS-INWARIMAQIVYYFVSS 238 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NS-IN~~Ril~Q~vyYf~a~ 238 (469)
++|+-|. ++++....||....+ .++.|+|+||||..+++++-.. .....+|+ .|+.|+.+|....|..+
T Consensus 139 ~~IfvP~-~~~~~Kl~q~~~yGA---~vi~v~g~~d~a~~~a~~~a~~------~g~~~~~~~~nP~~iEG~KTiayEI~ 208 (443)
T PRK05638 139 AFVVVPR-KVDKGKLIQMIAFGA---KIIRYGESVDEAIEYAEELAKL------NGLYNVTPEDNIIGLEGQKTIAFELW 208 (443)
T ss_pred EEEEECC-CCCHHHHHHHHHCCC---EEEEECCCHHHHHHHHHHHHHH------CCEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 6999528-999999999996498---8999799679999999999865------69488258777224321235899999
Q ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHH----HHCCCCCC---EEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCC
Q ss_conf 8744778873899634657887886677----75089877---05872-3676335677532220102345565642001
Q gi|254780465|r 239 IALGSPNRNISFSVPTGNFGDIFAGYMA----KMMGLPIE---KLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDI 310 (469)
Q Consensus 239 ~~~~~~~~~i~f~VPtGNfGni~Ag~~A----k~MGLPI~---kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI 310 (469)
-|+. |-.++||+||-+++++-|-+ +.||+ |+ |++++ .--.+.+.+-+..+ +.+..+|+++++-|
T Consensus 209 EQlg----PD~VvvPvG~G~ll~Gi~kGF~EL~~~G~-I~~~Pr~iaVQa~gc~Pi~~a~~~~---~~~~~~T~A~~i~I 280 (443)
T PRK05638 209 EELN----PTHVIVPTGSGSYIYSIYKGFKELIEIGV-IEEMPKLIAVQTERCNPIASEILGN---KKKCKETKALGLYV 280 (443)
T ss_pred HHHC----CCEEEEECCCCHHHHHHHHHHHHHHHCCC-CCCCCCEEEEECCCCCHHHHHHHCC---CCCCCCCCCCEEEE
T ss_conf 9759----97799945873179999999999997599-6678843688448888799998369---98789966210460
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHH
Q ss_conf 34013788999870970899999987520265105520221100012134213889999999999986395983833999
Q gi|254780465|r 311 QIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVG 390 (469)
Q Consensus 311 ~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG 390 (469)
.+|.+..+.+- .+++.|. .+..|+|+|+++..+..- +.|.+++|.+|++
T Consensus 281 ~~P~~~~~~l~---------------avr~sgG---------------~~vaVsD~EI~~a~~lla-~eGif~EPasAaa 329 (443)
T PRK05638 281 KNPVMKEKVIE---------------AIRESGG---------------TAVVVNEEEIMAGEKLLA-NEGIFAELSSAVV 329 (443)
T ss_pred CCCCCHHHHHH---------------HHHHHCC---------------EEEECCHHHHHHHHHHHH-HCCCEECHHHHHH
T ss_conf 89889999999---------------9998399---------------899828999999999999-6891477578999
Q ss_pred HHHHHHHHHC----CCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 9999998747----99839999718843498889998
Q gi|254780465|r 391 IHAALACRKS----SSTPMVTLATAHPSKFPDTVKAA 423 (469)
Q Consensus 391 ~~aa~~~~~~----~~~p~VvLATAHPaKFpe~V~~A 423 (469)
++++.++... .+..+|++-|.|-.|=+++..+-
T Consensus 330 ~Agl~kl~e~G~I~~~e~VV~vlTGsGLKt~e~~~~~ 366 (443)
T PRK05638 330 MPALLKLVETGFIEKGDRVVLVVTGSGLKTGEGPGRE 366 (443)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 9999999976998999929999688877765555410
No 10
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=99.95 E-value=5.4e-26 Score=200.58 Aligned_cols=228 Identities=28% Similarity=0.246 Sum_probs=187.3
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 48825466213898120682388899999999731798207997166540467999861667855999735776760332
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ 174 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~ 174 (469)
+.+.|+-.-+|.||+||||+++..+...+...... +..+|+++|||++|.|++.+.+. .++++.|+.|++ .|+.++
T Consensus 14 g~~v~~K~E~~~ptgSfK~Rga~~~v~~a~~~~~~--~~~~vv~aSsGN~g~a~A~~a~~-~G~~~~i~~p~~-~~~~k~ 89 (244)
T cd00640 14 GANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL--PKGVIIESTGGNTGIALAAAAAR-LGLKCTIVMPEG-ASPEKV 89 (244)
T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCEEEEECCCHHHHHHHHHHHH-CCCCCEEEECCH-HHHHHH
T ss_conf 98899985589988880999999999999984886--69889992785789999998874-696633776751-567899
Q ss_pred CCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCC-CCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 13113447870899717965888999999750154313583113455-65444011055899999874477887389963
Q gi|254780465|r 175 KQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINS-INWARIMAQIVYYFVSSIALGSPNRNISFSVP 253 (469)
Q Consensus 175 ~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NS-IN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VP 253 (469)
.+|.... .+++.++++||||+..++++..+. .....+|+ .||.++.+|....+..+.|+... .+..+++|
T Consensus 90 ~~~~~~G---A~vi~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~n~~~~~g~~t~~~Ei~~Q~~~~-~~d~vv~~ 160 (244)
T cd00640 90 AQMRALG---AEVVLVPGDFDDAIALAKELAEED-----PGAYYVNQFDNPANIAGQGTIGLEILEQLGGQ-KPDAVVVP 160 (244)
T ss_pred HHHHHCC---CEEEEECCCHHHHHHHHHHHHHHC-----CCEEEECCCCCCHHHCCCCCCHHHHHHHCCCC-CCCEEEEE
T ss_conf 9887079---779998995489999999999868-----99596126668412011335299999976999-97489997
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 46578878866777508987705872367633567753222010234556564200134013788999870970899999
Q gi|254780465|r 254 TGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKE 333 (469)
Q Consensus 254 tGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~ 333 (469)
.|+.|++.+.+.+.+++.|.-|+|.+.+
T Consensus 161 vG~Gg~~~G~~~~~k~~~~~~~ii~vep---------------------------------------------------- 188 (244)
T cd00640 161 VGGGGNIAGIARALKELLPNVKVIGVEP---------------------------------------------------- 188 (244)
T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEEEC----------------------------------------------------
T ss_conf 6844879999999996299996999968----------------------------------------------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC--CCCCEEEEECC
Q ss_conf 9875202651055202211000121342138899999999999863959838339999999998747--99839999718
Q gi|254780465|r 334 AFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS--SSTPMVTLATA 411 (469)
Q Consensus 334 ~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~--~~~p~VvLATA 411 (469)
...+|+|+|+.+.++.++++.|++++|++|+++.++.+.... .+..+|++-|.
T Consensus 189 -------------------------~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~~aa~~~~~~~~~~~~~vv~i~~g 243 (244)
T cd00640 189 -------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTG 243 (244)
T ss_pred -------------------------CCCEECHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf -------------------------8877999999999999999829858678999999999975873985989998379
Q ss_pred C
Q ss_conf 8
Q gi|254780465|r 412 H 412 (469)
Q Consensus 412 H 412 (469)
+
T Consensus 244 g 244 (244)
T cd00640 244 G 244 (244)
T ss_pred C
T ss_conf 9
No 11
>PRK07409 threonine synthase; Validated
Probab=99.95 E-value=8.5e-25 Score=192.29 Aligned_cols=294 Identities=25% Similarity=0.326 Sum_probs=202.6
Q ss_pred CCEEEECC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 86047724-------88254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 88 VTPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 88 ~~pl~~l~-------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
-+||.++. -++|+=-=+-.||+||||.++..+ +....+. + .-.|++||||+||.+++...+ +.++++
T Consensus 31 ~TPLv~~~~L~~~~G~~v~~K~E~~nPTGSfKDRga~~~---i~~a~~~-g-~~~vv~aSsGN~g~s~A~~aa-~~Gl~~ 104 (350)
T PRK07409 31 NTPLIPAPNLSELTGVEVYVKYEGLNPTGSFKDRGMTMA---VSKAKEE-G-AKAVICASTGNTSASAAAYAA-RAGLKA 104 (350)
T ss_pred CCEEEECCHHHHHHCCEEEEEECCCCCCCCHHHHHHHHH---HHHHHHC-C-CCEEEEECCCHHHHHHHHHHH-HCCCCE
T ss_conf 780368431008769979998447898759699999999---9999974-9-998999796589999999999-819956
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
+|+-|++.++.-...|+....+ .++.|+|+||||..+++++- ++...+.+|+.|..|+.+|...-+.-+-|
T Consensus 105 ~I~mP~~~~~~~Kl~~~~~~GA---~vi~v~g~~~~~~~~a~~~~------~~~~~~~~~~~nP~~i~G~~T~a~EI~eq 175 (350)
T PRK07409 105 AVLIPEGKIALGKLAQAVMYGA---EIIQIDGNFDDALEIVRELA------EKYPVTLVNSVNPYRIEGQKTAAFEIVDA 175 (350)
T ss_pred EEECCCCCCCHHHHHHHHHCCC---EEEEECCCHHHHHHHHHHHH------HHCCCEECCCCCCCHHHCCCCCHHHHHHH
T ss_conf 9974587564899999997398---78862798999999999999------86692444778802765164507799998
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHHH----HHCCCCC--CEEEEECCCC-CHHHHHHHCCCHHCCCCCCCCCCCCCCCCH
Q ss_conf 44778873899634657887886677----7508987--7058723676-335677532220102345565642001340
Q gi|254780465|r 241 LGSPNRNISFSVPTGNFGDIFAGYMA----KMMGLPI--EKLIIATNEN-DTLVRMFDMGMYRPEIVMETTSPAMDIQIP 313 (469)
Q Consensus 241 ~~~~~~~i~f~VPtGNfGni~Ag~~A----k~MGLPI--~kli~AtN~N-diL~rf~~tG~y~~~~~~~T~SpsMDI~v~ 313 (469)
+. ..+-.+++|+|+-|++.+-|-+ +++|+.- -|+++.--+. ..+.+ | .+..-.+|++.++.|+.|
T Consensus 176 lg--~~PD~vv~pvG~Gg~i~g~~kGf~el~~~g~~~~~Pri~gvqa~g~api~~----g--~~~~~p~tia~~i~ig~P 247 (350)
T PRK07409 176 LG--DAPDYLCIPVGNAGNITAYWKGFKEYHQAGKSTKLPRMMGFQAAGAAPIVR----G--EPVKNPETIATAIRIGNP 247 (350)
T ss_pred HC--CCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCC----C--CCCCCCCCHHCCCCCCCC
T ss_conf 18--999999957788822788998899998635455677404542156571004----8--445898530100024898
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHH
Q ss_conf 13788999870970899999987520265105520221100012134213889999999999986395983833999999
Q gi|254780465|r 314 SNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHA 393 (469)
Q Consensus 314 SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~a 393 (469)
.++++.+..+-.. .| ....|+|+|+.+.++.+.++.|++++|.+|+++++
T Consensus 248 ~~~~~~~~~~~~s--------------~G----------------~~~~VsD~Ei~~a~r~La~~EGi~vepssaaa~Aa 297 (350)
T PRK07409 248 ASWDKAVAARDES--------------GG----------------LFDAVTDEEILEAYRLLARKEGVFVEPASAASVAG 297 (350)
T ss_pred CCHHHHHHHHHHH--------------CC----------------EEEEECHHHHHHHHHHHHHHCCEEECCCHHHHHHH
T ss_conf 6569999999984--------------99----------------79998899999999999985797778208999999
Q ss_pred HHHHHHC----CCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHH
Q ss_conf 9998747----998399997188434988899980879888988988
Q gi|254780465|r 394 ALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQ 436 (469)
Q Consensus 394 a~~~~~~----~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~ 436 (469)
+.++.+. ++..+|++.|.|-.|.+++|.+.-. .++|+.+..
T Consensus 298 ~~kl~~~g~i~~~~~VV~iltg~GlKd~~~~~~~~~--~~~~~~~~~ 342 (350)
T PRK07409 298 LLKAKEQGKVPKGSTVVCTLTGNGLKDPDTAIKNSP--VPLPPDLDA 342 (350)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHCCC--CCCCCCHHH
T ss_conf 999997599999996999958898868878950598--678999999
No 12
>PRK06721 threonine synthase; Reviewed
Probab=99.94 E-value=1.8e-23 Score=183.15 Aligned_cols=306 Identities=24% Similarity=0.268 Sum_probs=211.9
Q ss_pred CCEEEEC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 8604772-------488254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 88 VTPLIQL-------NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 88 ~~pl~~l-------~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
-+||.++ +-++|+=-=+--||+||||.++..+ +.+..++. . -.|+++|||+||.|++.+.+ +.++++
T Consensus 28 ~TPLi~~~~l~~~lG~~l~~K~E~~nPtGSfKdRga~~~---i~~a~~~g-~-~~vv~aSsGN~g~alA~~aa-~~G~~~ 101 (352)
T PRK06721 28 NTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMA---VAKAKEEG-S-EAIICASTGNTSASAAAYAA-RLGMKC 101 (352)
T ss_pred CCCCEECCHHHHHHCCEEEEEECCCCCCCCCHHHHHHHH---HHHHHHCC-C-CEEEEECCCHHHHHHHHHHH-HHCCCE
T ss_conf 784257204349869989998636897648699999999---99999818-9-96999785679999999999-848966
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
+|+-|++.+++....||.... ..++.++|+||||...++++-.+. ...-+|+.|..|+.+|-...+.-+-|
T Consensus 102 ~IvmP~~~~~~~Ki~~~~~~G---Aevi~v~~~~~~~~~~~~~~~~~~------~~~~~~~~np~~ieG~~Ti~~EI~eQ 172 (352)
T PRK06721 102 IIVIPEGKIAHGKLAQAVAYG---AEIISIEGNFDDALKAVRNIAAEE------PITLVNSVNPYRIEGQKTAAFEICDQ 172 (352)
T ss_pred EEEECCCCCCHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHHC------CCEEECCCCHHHHHHHHHHHHHHHHH
T ss_conf 999247767277999998649---869980899999999999999854------98652257816664104378789998
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHH-----HHHCCCCCCEEEEECCCC-CHHHHHHHCCCHHCCCCCCCCCCCCCCCCHH
Q ss_conf 4477887389963465788788667-----775089877058723676-3356775322201023455656420013401
Q gi|254780465|r 241 LGSPNRNISFSVPTGNFGDIFAGYM-----AKMMGLPIEKLIIATNEN-DTLVRMFDMGMYRPEIVMETTSPAMDIQIPS 314 (469)
Q Consensus 241 ~~~~~~~i~f~VPtGNfGni~Ag~~-----Ak~MGLPI~kli~AtN~N-diL~rf~~tG~y~~~~~~~T~SpsMDI~v~S 314 (469)
+. ..+-.+++|+|+-|++.+.|- .+.+|.+--+++....+. ..+. .|. ......|++.+..++.|.
T Consensus 173 l~--~~pD~vv~pvG~Gg~i~G~~~g~~~~~~~~~~~~pri~~vq~~g~~~~~----~g~--~~~~~~tia~ai~i~~p~ 244 (352)
T PRK06721 173 LQ--RAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIV----KGH--VIEEPETIATAIRIGNPA 244 (352)
T ss_pred HC--CCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHH----CCC--CCCCCCEEEEHHHCCCCC
T ss_conf 19--9999899917970999999999999987507778745542067622544----275--057884120021038887
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHH
Q ss_conf 37889998709708999999875202651055202211000121342138899999999999863959838339999999
Q gi|254780465|r 315 NFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAA 394 (469)
Q Consensus 315 NfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa 394 (469)
++...+- ..+ ... -....|+|+|+.++++.++++.|.+++|.+|++++++
T Consensus 245 ~~~~~~~------------~~~----------------~~~--g~iv~Vsd~Ei~~a~r~La~~eGl~vepssa~alAal 294 (352)
T PRK06721 245 SWSYAVE------------AAE----------------QSH--GEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGV 294 (352)
T ss_pred CCHHHHH------------HHH----------------HHC--CEEEEECHHHHHHHHHHHHHHCCEEECHHHHHHHHHH
T ss_conf 6188899------------999----------------869--9999989999999999999868908887889999999
Q ss_pred HHHHH----CCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHH
Q ss_conf 99874----799839999718843498889998087988898898874172110106899999999999611
Q gi|254780465|r 395 LACRK----SSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRN 462 (469)
Q Consensus 395 ~~~~~----~~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l~~k~e~~~~l~nd~~~ik~fI~~k~ 462 (469)
.++.. .++..+|++-|.|-.|.+|.+-..-..+++ .+++|+++++++|++-.
T Consensus 295 lkl~~~g~i~~g~~VV~iltg~GlKd~d~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 350 (352)
T PRK06721 295 MKHVQSGKIKKGETVVAVLTGNGLKDPDIAISSNTLDIA----------------SVSNNIEQIKEHIKGVI 350 (352)
T ss_pred HHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCC----------------CCCCCHHHHHHHHHHHH
T ss_conf 999983998987989999589987767688641678866----------------77854999999999873
No 13
>PRK06352 threonine synthase; Validated
Probab=99.94 E-value=1.6e-23 Score=183.39 Aligned_cols=297 Identities=24% Similarity=0.286 Sum_probs=205.3
Q ss_pred CCEEEECC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 86047724-------88254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 88 VTPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 88 ~~pl~~l~-------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
-+||.++. -+.|+=-=+--||+||||.++-.+ +....+.. .-.|++||||+||.|++.+.+ +.++++
T Consensus 28 ~TPLv~~~~L~~~lG~~vy~K~E~~nptGSfKdRga~~~---i~~a~~~g--~~~vv~aSsGN~g~a~A~~aa-~~G~~~ 101 (351)
T PRK06352 28 NTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMA---VAKAKEEG--AEAVICASTGNTSAAAAAYAT-RAGLKA 101 (351)
T ss_pred CCCEEECHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHH---HHHHHHCC--CCEEEEECCCHHHHHHHHHHH-HCCCCE
T ss_conf 782258045459879989998457897648699999999---99999749--987999777638999999999-839971
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
.|+-|+++++.-+..||....++ ++.++|+||||...++++..+. ...-+|+.|+.|+.+|...-+..+-|
T Consensus 102 ~IvmP~~~~~~~k~~~~~~~GA~---vi~v~g~~~~a~~~~~~~a~~~------~~~~~~~~np~~~~G~~Ti~~Ei~eq 172 (351)
T PRK06352 102 YIVIPEGKVALGKLAQAVMYGAD---IISIQGNFDEALKSVRELAETE------AVTLVNSVNPYRLEGQKTAAFEICEQ 172 (351)
T ss_pred EEEEECCCCCHHHHHHHHHCCCC---EEECCCCHHHHHHHHHHHHHHH------CCEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 79986898868999999972992---5844886789999999999863------94300367840465345599999985
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHHHHHC-------CCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCH
Q ss_conf 44778873899634657887886677750-------89877058723676335677532220102345565642001340
Q gi|254780465|r 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMM-------GLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIP 313 (469)
Q Consensus 241 ~~~~~~~i~f~VPtGNfGni~Ag~~Ak~M-------GLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~ 313 (469)
+. ..+-.+++|.|+-|++.+.|.+-+. ++| +++....+.- .-+..| ++....+|++.+..|+.|
T Consensus 173 ~~--~~pD~vv~pvG~Gg~i~Gi~~g~ke~~~~~~~~~P--~i~gv~~~g~---~~i~~g--~~~~~~~tia~~i~ig~p 243 (351)
T PRK06352 173 LG--SAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLP--RMHGFEAEGA---AAIVQG--KPIDNPETIATAIRIGNP 243 (351)
T ss_pred CC--CCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCC--CCCCCCCCCC---HHHHCC--EECCCCCCEEEEEECCCC
T ss_conf 48--99999999688068999999999987650257888--6024333662---588658--451367530000231787
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHH
Q ss_conf 13788999870970899999987520265105520221100012134213889999999999986395983833999999
Q gi|254780465|r 314 SNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHA 393 (469)
Q Consensus 314 SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~a 393 (469)
.++....... + +.+. ....|+|+|+.+.++.+.++.|.+++|.+|+++++
T Consensus 244 ~~~~~~~~~~------------~---~~~g---------------~vv~Vsd~Ei~~A~~~La~~eGi~~epssa~alAa 293 (351)
T PRK06352 244 ASWELAEAAR------------D---ESGG---------------YIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAG 293 (351)
T ss_pred CCHHHHHHHH------------H---HCCC---------------EEEEECHHHHHHHHHHHHHHCCCEECHHHHHHHHH
T ss_conf 5079999999------------7---2399---------------59997689999999999996591887778999999
Q ss_pred HHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 999874----799839999718843498889998087988898898874
Q gi|254780465|r 394 ALACRK----SSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMM 438 (469)
Q Consensus 394 a~~~~~----~~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l~ 438 (469)
+.++.. .++..+|++.|.|-.|.||++........+.++.+++++
T Consensus 294 llkl~~~G~l~~g~~VV~vltg~GlKd~~~~~~~~~~~~~~~~~~~~~~ 342 (351)
T PRK06352 294 VIQHVANGTIKKGETVVCVFTGNGLKDPDTAMSVHEIPISHVDDIEAMR 342 (351)
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHH
T ss_conf 9999974999985989999588998688999984689957899999999
No 14
>PRK08329 threonine synthase; Validated
Probab=99.93 E-value=5e-23 Score=179.99 Aligned_cols=277 Identities=15% Similarity=0.139 Sum_probs=201.6
Q ss_pred CCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 67860477248825466213898120682388899999999731798207997166540467999861667855999735
Q gi|254780465|r 86 AAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFP 165 (469)
Q Consensus 86 ~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP 165 (469)
+..+||.++++++|+=--+..||+||||.|+... +.+..+. + .-.|++||||++|.|++.+ ..+.++++.|+-|
T Consensus 62 eg~Tpl~~~~~~l~~K~E~~nPTGSFKdRga~~~---vs~a~~~-g-~~~vv~aSsGN~g~a~A~~-aa~~Gi~~~I~vP 135 (348)
T PRK08329 62 PAITPISKVSKNVYFKLDYLQPTGSFKDRGTYVT---VAKLKEE-G-IKEVVIDSSGNAAISLAVY-SLFEGIRVHVFVS 135 (348)
T ss_pred CCCCCCEECCCCEEEEECCCCCCCEEHHHHHHHH---HHHHHHC-C-CCEEEEECCCCHHHHHHHH-HHHCCCCEEEEEC
T ss_conf 8776200437717996035477765387899999---9999975-9-9869994279889999999-9984997799958
Q ss_pred CCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 77676033213113447870899717965888999999750154313583113455654440110558999998744778
Q gi|254780465|r 166 EGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPN 245 (469)
Q Consensus 166 ~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~ 245 (469)
.+ +++....||-...+ .++.|+|++||+.....++..+.. +.+ .-+..|..|+.+|-..-+..+-|+.
T Consensus 136 ~~-a~~~K~~~~~~~GA---~v~~v~g~~~~~~~~a~~~~~~~g----~~~-~~~~~np~~ieGqkTia~Ei~eql~--- 203 (348)
T PRK08329 136 YN-ARKEKISLLSSLGA---ELHFVEGDRMKVHEEAVKFSRRNN----IPY-VSHWLNPYFLEGTKTIAYEIYEQVG--- 203 (348)
T ss_pred CC-CCHHHHHHHHHHCC---EEEEECCCHHHHHHHHHHHHHHCC----CEE-CCCCCCHHHHHCCCCHHHHHHHHCC---
T ss_conf 99-88999999997098---899985999999999999999809----875-3765674665146627999998719---
Q ss_pred CCEEEEEECCCHHHHHHHHHHH----HCCCC--CCEEEEECCCC-CHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 8738996346578878866777----50898--77058723676-33567753222010234556564200134013788
Q gi|254780465|r 246 RNISFSVPTGNFGDIFAGYMAK----MMGLP--IEKLIIATNEN-DTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFER 318 (469)
Q Consensus 246 ~~i~f~VPtGNfGni~Ag~~Ak----~MGLP--I~kli~AtN~N-diL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfER 318 (469)
.+-.++||+|+-|++.+.|.+- .+|+. +-|++++-.+. +.+. ++.....|++.++-|..|.+.+.
T Consensus 204 ~pD~vvvPvG~Ggll~Gi~kgf~el~~~g~i~~~P~i~~vqaeg~~~~~--------~~~~~~~tiAdgi~v~~p~~~~~ 275 (348)
T PRK08329 204 VPDYVFVPTGSGTLFLGIWKGFKELFEMGEINRMPSLVAVQAEGFESLC--------KRSKSKNVLADGIAIPNPPRKEE 275 (348)
T ss_pred CCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHH--------HCCCCCCCCCCEECCCCCCCHHH
T ss_conf 9976885347724899999999999860656889848999568775777--------40335782435434588888899
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 99987097089999998752026510552022110001213421388999999999998639598383399999999987
Q gi|254780465|r 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR 398 (469)
Q Consensus 319 llf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~ 398 (469)
.+-. +++.+. ....|+|+|+.+.++.++ +.|.+++|.+|+++++++++.
T Consensus 276 ~~~~---------------i~~s~g---------------~~v~Vsd~ei~~A~~~l~-~~Gi~vEPa~A~alAal~kl~ 324 (348)
T PRK08329 276 MKRA---------------IKESNG---------------FCISVGEEETRAALHWLR-RMGFLVEPTSAVALAAYWKAE 324 (348)
T ss_pred HHHH---------------HHHHCC---------------EEEEECHHHHHHHHHHHH-HCCCEECHHHHHHHHHHHHHH
T ss_conf 9999---------------998799---------------899968999999999999-689188736899999999999
Q ss_pred HCC--CCCEEEEECCCCCCCHHH
Q ss_conf 479--983999971884349888
Q gi|254780465|r 399 KSS--STPMVTLATAHPSKFPDT 419 (469)
Q Consensus 399 ~~~--~~p~VvLATAHPaKFpe~ 419 (469)
..+ +...|++-|.|-.||+++
T Consensus 325 e~g~i~~~vV~~lTG~GlK~~~~ 347 (348)
T PRK08329 325 DEGLIPGSSLLPLTGSGLKFHSS 347 (348)
T ss_pred HHCCCCCCEEEEECCCCCCCCCC
T ss_conf 82899998899979887677565
No 15
>PRK06450 threonine synthase; Validated
Probab=99.92 E-value=1.9e-22 Score=175.99 Aligned_cols=274 Identities=20% Similarity=0.159 Sum_probs=202.6
Q ss_pred CCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 67860477248825466213898120682388899999999731798207997166540467999861667855999735
Q gi|254780465|r 86 AAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFP 165 (469)
Q Consensus 86 ~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP 165 (469)
+--+||.+. +++|+=-=++.||+||||.++... +.++.+..- -.|++||||++|.|.+ ++..+.++++.|+-|
T Consensus 54 eG~TPl~~~-~~l~~K~E~~nPTgSfKDRg~~~~---v~~a~~~G~--~~vv~aSsGN~g~slA-ayaa~~Gi~~~I~vP 126 (336)
T PRK06450 54 EGETPIIKG-GNFYFKLDFLNPTGSYKDRGSVTL---ISYLADRGI--KEISEDSSGNAGASIA-AYGAAAGIKVKIFVP 126 (336)
T ss_pred CCCCCCEEC-CCEEEEECCCCCCCCCHHHHHHHH---HHHHHHHCC--CEEEEECCHHHHHHHH-HHHHHCCCCEEEECC
T ss_conf 887861654-988996478798747799999999---999998098--8457638519999999-999984996899826
Q ss_pred CCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 77676033213113447870899717965888999999750154313583113455654440110558999998744778
Q gi|254780465|r 166 EGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPN 245 (469)
Q Consensus 166 ~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~ 245 (469)
+ .++.....||.... ..++.|+|++||+++.+++. ..+ ...+.+|..++.+|...-+.-+-|+.. .
T Consensus 127 ~-~~~~~K~~~~~~yG---A~vv~v~g~~dd~~~~a~~~-------g~~--~~~~~~~P~~~eG~kTia~EI~eql~~-~ 192 (336)
T PRK06450 127 E-TASGGKLKQIEAYG---AEVIKVEGSRDDVQKAAENS-------GYY--YASHVLQPEFRDGIRTLAYEIVRQLNW-K 192 (336)
T ss_pred C-CCCHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHH-------CCC--CCCCCCCCCHHHHHHHHHHHHHHHCCC-C
T ss_conf 8-89999999999769---99999799899999999862-------873--446565800330177899999998088-9
Q ss_pred CCEEEEEECCCHHHHHHHHHH----HHCCC--CCCEEEEECC-CCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 873899634657887886677----75089--8770587236-7633567753222010234556564200134013788
Q gi|254780465|r 246 RNISFSVPTGNFGDIFAGYMA----KMMGL--PIEKLIIATN-ENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFER 318 (469)
Q Consensus 246 ~~i~f~VPtGNfGni~Ag~~A----k~MGL--PI~kli~AtN-~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfER 318 (469)
-|-.++||+|+-|.+.+.|-+ +.+|+ ++-|++.+-- ..+.+.+-|+.+.+.+.....|++.++-|+.|-++++
T Consensus 193 ~PD~VvvPvG~G~ll~Gi~kgf~el~~~G~i~~~Prii~Vqae~~~p~~~a~~~~~~~~~~~~~tiAd~i~~~~P~~~~~ 272 (336)
T PRK06450 193 MPDYIFIPVSAGTLLLGVYSGFKHLLESGEIDEMPKIVAVQTEQVSPLCAKLNGLKYDPPNKVTSIADALVSTNPVLLEE 272 (336)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHH
T ss_conf 98779982488626999999999998646554577346622466785999971898888777764100353068863899
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 99987097089999998752026510552022110001213421388999999999998639598383399999999987
Q gi|254780465|r 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR 398 (469)
Q Consensus 319 llf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~ 398 (469)
.+--+ ++.| ....|+|+|+.+.++.+- +.|.+++|.+|++++|+++.+
T Consensus 273 ~~~~i---------------~~~G----------------~~v~Vsd~ei~~A~~~La-~~Gi~vEPasA~alAal~k~~ 320 (336)
T PRK06450 273 MLEVL---------------REYG----------------DCIVVSDNEIIEAWKELA-KKGILVEYSSATVYAAYKKKK 320 (336)
T ss_pred HHHHH---------------HHCC----------------CEEEECHHHHHHHHHHHH-HCCCEECHHHHHHHHHHHHCC
T ss_conf 99999---------------8479----------------889989999999999999-689578886899999985607
Q ss_pred HCCCCCEEEEECCCCCC
Q ss_conf 47998399997188434
Q gi|254780465|r 399 KSSSTPMVTLATAHPSK 415 (469)
Q Consensus 399 ~~~~~p~VvLATAHPaK 415 (469)
+...|++-|.|-.|
T Consensus 321 ---~e~vV~vlTG~gLK 334 (336)
T PRK06450 321 ---VENSVLVLTGNGLK 334 (336)
T ss_pred ---CCCEEEEECCCCCC
T ss_conf ---99999997886536
No 16
>pfam00291 PALP Pyridoxal-phosphate dependent enzyme. Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Probab=99.88 E-value=1.6e-20 Score=162.58 Aligned_cols=233 Identities=26% Similarity=0.254 Sum_probs=160.4
Q ss_pred CCCEEEECC-------CCCE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 786047724-------8825-46621389812068238889999999973179820799716654046799986166785
Q gi|254780465|r 87 AVTPLIQLN-------ANEF-LLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRI 158 (469)
Q Consensus 87 ~~~pl~~l~-------~~~~-vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i 158 (469)
..+||.++. .+.| -+|.+| ||+||||+++. .++..+.++. ...|++||||+||.|.+.+.+.. ++
T Consensus 6 g~TPL~~~~~l~~~~g~~i~~K~E~~~-ptgS~K~R~a~---~~i~~a~~~~--~~~vv~assGN~g~alA~~a~~~-G~ 78 (251)
T pfam00291 6 GPTPLVRLLLLGGLGGARVYLKLESLN-PTGSFKDRGAA---NLLLRALEEG--GKTVVEASSGNTGRALAAAAARL-GL 78 (251)
T ss_pred CCCCEEEHHHHHHHHCCEEEEEECCCC-CCCCCHHHHHH---HHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHCC-CC
T ss_conf 589125874532756988999844789-76785999999---9999999769--99899968878999998653106-97
Q ss_pred EEEEECCCCCCCHHHHCCCEEECCCCEEE-EEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 59997357767603321311344787089-97179658889999997501543135831134556544401105589999
Q gi|254780465|r 159 NMYILFPEGRISVVQQKQMTTSEASNINV-IAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVS 237 (469)
Q Consensus 159 ~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~-i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a 237 (469)
++.|+.|++ +|+.++.+|.+...+.+.. -..++++|+|+..+++.+.+..........-.+..|+-++..|...++..
T Consensus 79 ~~~i~~p~~-~~~~k~~~~~~~GA~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 157 (251)
T pfam00291 79 KVTIVVPEG-ASPGKLLLMRALGAEVILVVSDVGGDYDDALELAEEAAEELALAGGNSYNIGDQYDPNVIAGYGTIGLEI 157 (251)
T ss_pred CEEEECCCC-CCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 469857887-6399999999679989997898651399999999999998643469848747999708999889999999
Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHH-HHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 9874477887389963465788788667-775089877058723676335677532220102345565642001340137
Q gi|254780465|r 238 SIALGSPNRNISFSVPTGNFGDIFAGYM-AKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNF 316 (469)
Q Consensus 238 ~~~~~~~~~~i~f~VPtGNfGni~Ag~~-Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNf 316 (469)
.-|+.. .+-.+++|+|.-|.+.+-.- -|.++.+++-+.+..
T Consensus 158 ~~q~~~--~~d~iv~~~G~Gg~~~Gi~~~~k~~~~~~~vi~ve~------------------------------------ 199 (251)
T pfam00291 158 LEQLGG--VPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEP------------------------------------ 199 (251)
T ss_pred HHHCCC--CCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEE------------------------------------
T ss_conf 997599--999899717983579999999997299984999932------------------------------------
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHH
Q ss_conf 88999870970899999987520265105520221100012134213889999999999986395983833999999999
Q gi|254780465|r 317 ERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALA 396 (469)
Q Consensus 317 ERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~ 396 (469)
+|+|+|+.+.++.+++++|++++|++|+++.++.+
T Consensus 200 ---------------------------------------------~V~d~e~~~a~~~l~~~egi~~~pssa~~~aa~~~ 234 (251)
T pfam00291 200 ---------------------------------------------AVSDEEALEAMRLLARREGILVEPSSAAALAAALR 234 (251)
T ss_pred ---------------------------------------------EECHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHH
T ss_conf ---------------------------------------------71999999999999998588796989999999999
Q ss_pred HHHC--CCCCEEEEEC
Q ss_conf 8747--9983999971
Q gi|254780465|r 397 CRKS--SSTPMVTLAT 410 (469)
Q Consensus 397 ~~~~--~~~p~VvLAT 410 (469)
.... .+..+|++-|
T Consensus 235 ~~~~~~~~~~vv~il~ 250 (251)
T pfam00291 235 LAEELGKGKRVVVVLT 250 (251)
T ss_pred HHHHHCCCCEEEEECC
T ss_conf 7687388698999765
No 17
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=99.87 E-value=1.1e-19 Score=156.81 Aligned_cols=281 Identities=25% Similarity=0.283 Sum_probs=196.0
Q ss_pred CCEEEECCC--------CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 860477248--------825466213898120682388899999999731798207997166540467999861667855
Q gi|254780465|r 88 VTPLIQLNA--------NEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 88 ~~pl~~l~~--------~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
-+||.+++. +.|+=-=++-||+||||.++..+ +....++. . ..|+++|||+||.|.+.+.+ ..+++
T Consensus 22 nTPLi~l~~Ls~~lg~~~i~~K~E~~nptGSfK~RgA~~~---i~~a~~~g-~-~~vv~~SsGN~G~alA~~a~-~~G~k 95 (324)
T cd01563 22 NTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVA---VSKAKELG-V-KAVACASTGNTSASLAAYAA-RAGIK 95 (324)
T ss_pred CCCEEEHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHH---HHHHHHCC-C-CEEEEECCHHHHHHHHHHHH-HCCCC
T ss_conf 8805466667887099879998636897778699999999---99999759-9-97999783399999999999-85996
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHH
Q ss_conf 99973577676033213113447870899717965888999999750154313583113455654440110558999998
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSI 239 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~ 239 (469)
+.|.-|++ +|+..+.+|....+ .++.++|++|+|...++++-.+. .....|+.|..++.+|.......+-
T Consensus 96 ~~Iv~p~~-~~~~k~~~i~~~GA---eVv~v~~~~~~~~~~a~~~~~~~------~~~~~~~~n~~~~~G~~T~~~EI~e 165 (324)
T cd01563 96 CVVFLPAG-KALGKLAQALAYGA---TVLAVEGNFDDALRLVRELAEEN------WIYLSNSLNPYRLEGQKTIAFEIAE 165 (324)
T ss_pred EEEECCCC-CHHHHHHHHHHCCC---EEEECCCCHHHHHHHHHHHHHHC------CCEECCCCCCHHHHCCHHHHHHHHH
T ss_conf 57655764-38999999995599---89975899999999999977745------8311045682555301037999999
Q ss_pred HHCCCCCCEEEEEECCCHHHHHHHHHHH----HCCCC--CCEEEEECCC-CCHHHHHHHCCCHH--CCCCCCCCCCCCCC
Q ss_conf 7447788738996346578878866777----50898--7705872367-63356775322201--02345565642001
Q gi|254780465|r 240 ALGSPNRNISFSVPTGNFGDIFAGYMAK----MMGLP--IEKLIIATNE-NDTLVRMFDMGMYR--PEIVMETTSPAMDI 310 (469)
Q Consensus 240 ~~~~~~~~i~f~VPtGNfGni~Ag~~Ak----~MGLP--I~kli~AtN~-NdiL~rf~~tG~y~--~~~~~~T~SpsMDI 310 (469)
|+... .+-.+++|.|+-|++.+.+.+- +.|.. .-|++....+ -+.+.+-+..|.-. +.....|++-++.+
T Consensus 166 Q~~~~-~pD~vv~~vG~Gg~~~Gi~~~~~~~~~~g~~~~~pkii~ve~~ga~~~~~~~~~g~~~~~~~~~~~tia~gl~~ 244 (324)
T cd01563 166 QLGWE-VPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRI 244 (324)
T ss_pred HHCCC-CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEEEEEEC
T ss_conf 84898-88869998477614778899999877505578884299997378857999987288765457788716646635
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHH
Q ss_conf 34013788999870970899999987520265105520221100012134213889999999999986395983833999
Q gi|254780465|r 311 QIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVG 390 (469)
Q Consensus 311 ~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG 390 (469)
+.|.+.++.+-.+. +. ......|+|+|+.++++.++++.|++++|.+|++
T Consensus 245 ~~p~~~~~~~~~~~----------------------------~~--~~~~v~V~d~e~~~a~~~l~~~egi~vepssg~~ 294 (324)
T cd01563 245 GNPASGPKALRAVR----------------------------ES--GGTAVAVSDEEILEAQKLLARTEGIFVEPASAAS 294 (324)
T ss_pred CCCCCCHHHHHHHH----------------------------HH--CCEEEEECHHHHHHHHHHHHHHCCCEECHHHHHH
T ss_conf 88777589999999----------------------------61--9989998999999999999998297452799999
Q ss_pred HHHHHHHHHC----CCCCEEEEECCCCCC
Q ss_conf 9999998747----998399997188434
Q gi|254780465|r 391 IHAALACRKS----SSTPMVTLATAHPSK 415 (469)
Q Consensus 391 ~~aa~~~~~~----~~~p~VvLATAHPaK 415 (469)
++++.++... .+..+|++-|-|-.|
T Consensus 295 lAa~~~~~~~~~~~~~~~Vv~il~G~G~K 323 (324)
T cd01563 295 LAGLKKLREEGIIDKGERVVVVLTGHGLK 323 (324)
T ss_pred HHHHHHHHHHCCCCCCCEEEEEECCCCCC
T ss_conf 99999999847999729899996989888
No 18
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=99.86 E-value=3e-19 Score=153.79 Aligned_cols=273 Identities=16% Similarity=0.139 Sum_probs=186.0
Q ss_pred CCEEEECC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 86047724-------88254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 88 VTPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 88 ~~pl~~l~-------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
.+||.++. .++|+=-=++-||+||||.++..+ +.+. .+++++..|++||||+||.|.+.+.+ .-++++
T Consensus 17 ~TPLi~l~~l~~~~g~~l~~K~E~~nPtGS~KdR~a~~~---i~~~-~~~~~~~~vv~aSsGN~G~a~A~~aa-~~G~~~ 91 (304)
T cd01562 17 RTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNK---LLSL-SEEERAKGVVAASAGNHAQGVAYAAK-LLGIPA 91 (304)
T ss_pred CCCEEEHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHH---HHHH-HHHCCCCCEEEECCCHHHHHHHHHHH-HHCCCC
T ss_conf 986446677668869979998547898778399999999---9998-87074585699688599999999999-729975
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
+|+-|++ .|....++|....+ .++.++++||+|...++++-.+.. .+.+...| |+.++.+|....+..+-|
T Consensus 92 ~Ivvp~~-~~~~k~~~i~~~GA---eVi~~~~~~~~~~~~a~~~a~~~g---~~~~~~~~--~~~~~~g~~Ti~~EI~~q 162 (304)
T cd01562 92 TIVMPET-APAAKVDATRAYGA---EVVLYGEDFDEAEAKARELAEEEG---LTFIHPFD--DPDVIAGQGTIGLEILEQ 162 (304)
T ss_pred EEECCCC-HHHHHHHHHHHCCC---CEEEECCCHHHHHHHHHHHHHHCC---CEEECCCC--CHHHHHHHCCHHHHHHHH
T ss_conf 1028853-28999999996598---389965851899999999998639---78758877--876874221179999997
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHH-HHHCCCCCCEEEE-ECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 4477887389963465788788667-7750898770587-2367633567753222010234556564200134013788
Q gi|254780465|r 241 LGSPNRNISFSVPTGNFGDIFAGYM-AKMMGLPIEKLII-ATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFER 318 (469)
Q Consensus 241 ~~~~~~~i~f~VPtGNfGni~Ag~~-Ak~MGLPI~kli~-AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfER 318 (469)
+. .+-.+++|.|+-|++.+.+. -|.++-.+ |+|. -....+.+++.+.+|.....+...|++.++++..|++.-.
T Consensus 163 ~~---~~D~vv~~vG~Gg~~~Gi~~~lk~~~p~~-kii~Vep~g~~~~~~s~~~g~~~~~~~~~t~a~gi~~~~~~~~~~ 238 (304)
T cd01562 163 VP---DLDAVFVPVGGGGLIAGIATAVKALSPNT-KVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTF 238 (304)
T ss_pred CC---CCCEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHCCCCEECCCCCEEEECCCCCCCCHHHH
T ss_conf 49---99879972586168999999999729999-899994088858999998799163488673542456898657789
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 99987097089999998752026510552022110001213421388999999999998639598383399999999987
Q gi|254780465|r 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR 398 (469)
Q Consensus 319 llf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~ 398 (469)
-+ . + +.. -....|+|+|+...++.++++.|++++|.+|+++.++++.+
T Consensus 239 ~~---~-----------~----------------~~~--d~~v~V~d~e~~~a~~~l~~~eGi~~~ps~aa~lAal~~~~ 286 (304)
T cd01562 239 EI---I-----------R----------------KLV--DDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGK 286 (304)
T ss_pred HH---H-----------H----------------HHC--CEEEEECHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCC
T ss_conf 99---9-----------8----------------629--85999899999999999999849878177999999999580
Q ss_pred HC-CCCCEEEEEC
Q ss_conf 47-9983999971
Q gi|254780465|r 399 KS-SSTPMVTLAT 410 (469)
Q Consensus 399 ~~-~~~p~VvLAT 410 (469)
.. .+..+|++-|
T Consensus 287 ~~~~~~~VV~vl~ 299 (304)
T cd01562 287 LDLKGKKVVVVLS 299 (304)
T ss_pred HHCCCCCEEEEEC
T ss_conf 6649992999918
No 19
>PRK06110 hypothetical protein; Provisional
Probab=99.82 E-value=2e-17 Score=141.22 Aligned_cols=274 Identities=17% Similarity=0.172 Sum_probs=189.0
Q ss_pred CCCEEEEC-------CCCCEE-EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 78604772-------488254-6621389812068238889999999973179820799716654046799986166785
Q gi|254780465|r 87 AVTPLIQL-------NANEFL-LELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRI 158 (469)
Q Consensus 87 ~~~pl~~l-------~~~~~v-lELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i 158 (469)
..+||.+. +-+.|+ +| ++-||+||||.|+.. .+....++.....-|++||||++|.|.+.+.+ .-++
T Consensus 20 ~~TPl~~~~~Ls~~~g~~v~lK~E-~~qptGSFK~RGa~~---~i~~l~~~~~~~~gvv~aSsGNhg~avA~aA~-~~G~ 94 (321)
T PRK06110 20 PPTPQYRWPLLAERLGCEVWVKHE-NHTPTGAFKVRGGLV---YFDRLRRRGPRPRGVISATRGNHGQSLAFAAR-RHGL 94 (321)
T ss_pred CCCCCCCHHHHHHHHCCEEEEEEC-CCCCCCCCHHHHHHH---HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH-HHCC
T ss_conf 799841678888997997999955-789878769998999---99999864887770899568649999999999-9398
Q ss_pred EEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHH
Q ss_conf 59997357767603321311344787089971796588899999975015431358311345565444011055899999
Q gi|254780465|r 159 NMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSS 238 (469)
Q Consensus 159 ~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~ 238 (469)
++.|+-|++ .|+.-.++|-...+ .++.+.++||++....+++-.+. ...-+++.|.-.+.+|-.+-+...
T Consensus 95 ~~~I~mP~~-a~~~K~~~i~~~GA---eVv~~~~~~~~a~~~a~~la~~~------g~~~v~~~~~~~i~G~~T~~~Ei~ 164 (321)
T PRK06110 95 AATIVVPHG-NSVEKNAAMRALGA---ELIEHGEDFQAAREEAARLAERR------GLHMVPSFHPDLVRGVATYALELF 164 (321)
T ss_pred CEEEECCCC-CCHHHHHHHHHHCC---CEEEECCCHHHHHHHHHHHHHHC------CCCCCCCCHHHHHCCCCHHHHHHH
T ss_conf 179977788-85999999998289---62896486799999999999971------976688512768706510899999
Q ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 874477887389963465788788667775089877058-7236763356775322201023455656420013401378
Q gi|254780465|r 239 IALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFE 317 (469)
Q Consensus 239 ~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfE 317 (469)
-|+.. .-.++||.|+-|.+.+...+.+.-=|--+++ +-....+.+++-+..|.-...+...|++.++.+..|+..
T Consensus 165 eq~~~---~D~v~vpvGgGgl~~G~~~~~~~~~~~~~vigVe~~~a~~~~~s~~~g~~v~~~~~~tiadgl~~~~p~~~- 240 (321)
T PRK06110 165 RAVPD---LDVVYVPIGMGSGICGLIAARDALGLKTEIVGVVSAHAPAYALSFEAGTVVTTPVATTLADGMACRTPDPE- 240 (321)
T ss_pred HHCCC---CCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHCCCEEECCCCCCEECCCCCCCCCHH-
T ss_conf 65789---99899587874589999999997199980788876876477899976990426987754134317998788-
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH
Q ss_conf 89998709708999999875202651055202211000121342138899999999999863959838339999999998
Q gi|254780465|r 318 RLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALAC 397 (469)
Q Consensus 318 Rllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~ 397 (469)
-|.+.. +. .-....|+|+|+...+|.++++.+.+++|-.|++++++.+.
T Consensus 241 --~~~~~~---------------------------~~--~d~~v~VsD~ei~~a~~~l~~~~~i~vEpsgaaalAa~l~~ 289 (321)
T PRK06110 241 --ALEIIR---------------------------AG--AARIVRVTDDEIAAAMRAYFTDTHNVAEGAGAAALAAALQE 289 (321)
T ss_pred --HHHHHH---------------------------HC--CCEEEEECHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHC
T ss_conf --999999---------------------------74--99699989999999999999976979836599999999838
Q ss_pred HHC-CCCCEEEEEC
Q ss_conf 747-9983999971
Q gi|254780465|r 398 RKS-SSTPMVTLAT 410 (469)
Q Consensus 398 ~~~-~~~p~VvLAT 410 (469)
+.. .+..+|++-|
T Consensus 290 ~~~~~g~~Vvvil~ 303 (321)
T PRK06110 290 RERLAGKRVGLVLS 303 (321)
T ss_pred CHHCCCCEEEEEEC
T ss_conf 41129993999928
No 20
>PRK08638 threonine dehydratase; Validated
Probab=99.81 E-value=4.8e-17 Score=138.55 Aligned_cols=266 Identities=16% Similarity=0.131 Sum_probs=183.6
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 48825466213898120682388899999999731798207997166540467999861667855999735776760332
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ 174 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~ 174 (469)
+.+.|+=-=++-||+||||.|+... +.... +++++..|++||||++|.|.+.+.+ .-++++.|+-|++ .|+.-.
T Consensus 41 g~~v~lK~E~~qptGSFK~RGa~n~---i~~l~-~~~~~~gvv~aSsGN~g~avA~~a~-~~G~~~~I~~P~~-~~~~K~ 114 (329)
T PRK08638 41 KGEIFLKLENMQRTGSFKFRGAFNK---LSSLT-DAEKRKGVVACSAGNHAQGVALSCA-LLGIDGKVVMPKG-APKSKV 114 (329)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHH---HHHHH-HHCCCCCEEEECCCCHHHHHHHHHH-HCCCCEEEECCCC-CCHHHH
T ss_conf 9979998514797678399999999---99978-7465670899568867999999999-8398659858898-879999
Q ss_pred CCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 131134478708997179658889999997501543135831134556-5444011055899999874477887389963
Q gi|254780465|r 175 KQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSI-NWARIMAQIVYYFVSSIALGSPNRNISFSVP 253 (469)
Q Consensus 175 ~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSI-N~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VP 253 (469)
.+|....+ .++-++++||++...++++..++. ..-+++- |+.++.+|-..-....-|+.+ .-.++||
T Consensus 115 ~~~~~~GA---~Vi~~~~~~~~a~~~a~~~a~~~g------~~~v~~~~~p~~i~G~~Ti~~Ei~eq~~~---~D~vvvp 182 (329)
T PRK08638 115 AATCGYGA---EVVLHGDNFNDTIAKVSEIVEEEG------RTFIPPYDDPKVIAGQGTIGLEILEDLYD---VDTVIVP 182 (329)
T ss_pred HHHHHHCC---CCEECCCCHHHHHHHHHHHHHHHC------CEEECCCCCHHHHHHHHHHHHHHHHHHCC---CCEEEEE
T ss_conf 99997287---514317864899999999998509------88522467831564413599999998246---9959994
Q ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 46578878866777508987705872-36763356775322201023455656420013401378899987097089999
Q gi|254780465|r 254 TGNFGDIFAGYMAKMMGLPIEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVK 332 (469)
Q Consensus 254 tGNfGni~Ag~~Ak~MGLPI~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~ 332 (469)
.|+-|.+.+-+.+-|.--|--|++.. +-..+.+.+-+..|.....+...|++-++.+..|++. -|.+.
T Consensus 183 vGgGGl~~Gi~~~lk~~~p~~~vigVepe~a~~~~~s~~~g~~~~~~~~~Tiadgl~~~~pg~~---~~~~~-------- 251 (329)
T PRK08638 183 IGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYKGEITTHRTTGTLADGCDVSRPGNL---TYEIV-------- 251 (329)
T ss_pred ECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCCCCCCCCCEEEEECCCCCCHH---HHHHH--------
T ss_conf 2743899999999997499987999987999955899987998647988844321115886378---89999--------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC---CCCCEEEEE
Q ss_conf 99875202651055202211000121342138899999999999863959838339999999998747---998399997
Q gi|254780465|r 333 EAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS---SSTPMVTLA 409 (469)
Q Consensus 333 ~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~---~~~p~VvLA 409 (469)
++ ..+ ....|+|+|+...++.++++.+++++|..|++++|+.+.+.. .+.++|++-
T Consensus 252 ---~~----------------~~d--~~v~Vsd~ei~~a~~~l~~~~~i~vEpsgA~alAall~~~~~~~~~~k~vv~vl 310 (329)
T PRK08638 252 ---RE----------------LVD--DIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAII 310 (329)
T ss_pred ---HH----------------CCC--CEEEECHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCCCCCCCCCEEEEE
T ss_conf ---97----------------499--689983999999999999977917735799999999848610047999789996
Q ss_pred C
Q ss_conf 1
Q gi|254780465|r 410 T 410 (469)
Q Consensus 410 T 410 (469)
|
T Consensus 311 s 311 (329)
T PRK08638 311 S 311 (329)
T ss_pred C
T ss_conf 8
No 21
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=99.81 E-value=9.6e-17 Score=136.46 Aligned_cols=272 Identities=14% Similarity=0.103 Sum_probs=177.6
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 4882546621389812068238889999999973-179820799716654046799986166785599973577676033
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHILE-ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQ 173 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~-~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q 173 (469)
+.++|+=-=++-||+||||.++..+ +...++ ...+...|++||||.+|.|.+.+.+ ..++++.|+-|++ +++.-
T Consensus 15 G~~v~~K~E~~nptGSfK~Rga~~~---i~~a~~~~~~~~~~vv~aSsGN~g~alA~~A~-~~G~~~~Iv~P~~-~~~~k 89 (316)
T cd06448 15 GCNVFLKLENLQPSGSFKIRGIGHL---CQKSAKQGLNECVHVVCSSGGNAGLAAAYAAR-KLGVPCTIVVPES-TKPRV 89 (316)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHH---HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHH-HCCCCEEEEECCC-CHHHH
T ss_conf 9989999546897777299999999---99999817677986999489679999999999-7398269983688-86999
Q ss_pred HCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 21311344787089971796588899999975015431358311345565444011055899999874477887389963
Q gi|254780465|r 174 QKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVP 253 (469)
Q Consensus 174 ~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VP 253 (469)
..+|....+ . ++-+.++++|+....++....++ ...+.+ -..-|+..+.+|-..-+...-|+.....+..+++|
T Consensus 90 ~~~ir~~GA-~--Vi~~g~~~~~~~~~~~~~~~~~~-~~~~~v--~~~~np~~i~G~~T~~~Ei~eQl~~~~~~d~vv~~ 163 (316)
T cd06448 90 VEKLRDEGA-T--VVVHGKVWWEADNYLREELAEND-PGPVYV--HPFDDPLIWEGHSSMVDEIAQQLQSQEKVDAIVCS 163 (316)
T ss_pred HHHHHHCCC-C--EEEECCCCHHHHHHHHHHHHHCC-CCCEEE--CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 999996599-3--89968982589999999998478-897983--68897667878778999999985348997099976
Q ss_pred CCCHHHHHHHHHH-HHCCCC-CCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 4657887886677-750898-7705872-367633567753222010234556564200134013788999870970899
Q gi|254780465|r 254 TGNFGDIFAGYMA-KMMGLP-IEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLL 330 (469)
Q Consensus 254 tGNfGni~Ag~~A-k~MGLP-I~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~ 330 (469)
.|+-|.+.+.+.+ ++.+.| | ++++. ....+.+++.+..|...+.+...|++.+|+...++ ++.+
T Consensus 164 ~G~Gg~l~G~~~~l~~~~~~~i-~iigVep~g~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~--~~~~---------- 230 (316)
T cd06448 164 VGGGGLLNGIVQGLERNGWGDI-PVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVS--SQAL---------- 230 (316)
T ss_pred CCCHHHHHHHHHHHHHHCCCCC-CEEEECCCCCHHHHHHHHCCCEECCCCCCEEEEEECCCCCC--HHHH----------
T ss_conf 7836889999999998379988-67864577875899999878854169988388762699844--9999----------
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHH-----HHH----HC
Q ss_conf 999987520265105520221100012-13421388999999999998639598383399999999-----987----47
Q gi|254780465|r 331 VKEAFYSLENKKYFRIDSEHLQKMSLS-FSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAAL-----ACR----KS 400 (469)
Q Consensus 331 v~~~m~~l~~~g~~~i~~~~l~~l~~~-f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~-----~~~----~~ 400 (469)
..+++. -....|+|+|+..+++.++++.|.++.|.+|++++|+. +++ ..
T Consensus 231 ---------------------~~~~~~~~~~~~Vtd~ei~~a~~~l~~~egl~veps~aa~lAa~~~~~~~~~~~~~~~~ 289 (316)
T cd06448 231 ---------------------EYAQEHNIKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLT 289 (316)
T ss_pred ---------------------HHHHHCCCEEEEECHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHCCCHHHHHCCCCC
T ss_conf ---------------------99986398699989999999999999977865558899999999838406776501359
Q ss_pred CCCCEEEEECC
Q ss_conf 99839999718
Q gi|254780465|r 401 SSTPMVTLATA 411 (469)
Q Consensus 401 ~~~p~VvLATA 411 (469)
++..+|++-|-
T Consensus 290 ~~~~vvvil~G 300 (316)
T cd06448 290 PLDNVVVVVCG 300 (316)
T ss_pred CCCEEEEEECC
T ss_conf 98969999738
No 22
>PRK07048 serine/threonine dehydratase; Validated
Probab=99.81 E-value=9.6e-17 Score=136.46 Aligned_cols=264 Identities=16% Similarity=0.104 Sum_probs=179.6
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCC
Q ss_conf 82546621389812068238889999999973179820799716654046799986166785599973577676033213
Q gi|254780465|r 97 NEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQ 176 (469)
Q Consensus 97 ~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~q 176 (469)
+.|+=-=++-||+||||.|+.-. +.. +....++..|++||||++|.|.+.+.+ .-++++.|+-|++ .|+....+
T Consensus 40 ~v~lK~E~~qptGSFK~RGa~~~---l~~-l~~~~~~~gvV~aSsGN~g~avA~aa~-~~G~~~~I~~P~~-~~~~K~~~ 113 (321)
T PRK07048 40 QVFFKCENFQRMGAFKFRGAYNA---LSQ-FSAEQRRAGVVTFSSGNHAQAIALAAR-LLGIPATIVMPQD-APAAKVAA 113 (321)
T ss_pred EEEEEECCCCCCCCCHHHHHHHH---HHH-CCHHHCCCCEEEECCCCHHHHHHHHHH-HHCCCEEEECCCC-CCHHHHHH
T ss_conf 79998325898788789999999---996-017745684799678737999999998-7099839977874-77999999
Q ss_pred CEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 11344787089971796588899999975015431358311345565-44401105589999987447788738996346
Q gi|254780465|r 177 MTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSPNRNISFSVPTG 255 (469)
Q Consensus 177 mtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtG 255 (469)
|....+ .++.+++++|+++.+.+++-.+. .+.-+++-| .-.+.+|-.--+.-+-|+. +.-.++||.|
T Consensus 114 i~~~GA---~Vv~~~~~~~~~~~~a~~~a~~~------g~~~i~~~d~p~~iaG~~Ti~~EI~eq~~---~~D~vvvpvG 181 (321)
T PRK07048 114 TRGYGG---EVVTYDRYTEDREQIGRRLAEER------GLTLIPPYDHPDVIAGQGTAAKELFEEVG---ELDALFVCLG 181 (321)
T ss_pred HHHCCC---EEEECCCCCHHHHHHHHHHHHHC------CCCCCCCCCCHHHHHCCCCHHHHHHHHCC---CCCEEEECCC
T ss_conf 997199---69963898369999999999862------96668876685477313408999998649---9988985268
Q ss_pred CHHHHHHHHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 5788788667775089877058-723676335677532220102345565642001340137889998709708999999
Q gi|254780465|r 256 NFGDIFAGYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEA 334 (469)
Q Consensus 256 NfGni~Ag~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~ 334 (469)
+-|.+.+.+.+.+---|--++| +-....+.+++-+.+|....-+..+|++-++....+++ +-|.+.
T Consensus 182 gGGl~~Gi~~~~k~~~p~~~vigVep~~a~~~~~s~~~g~~~~~~~~~tiadgl~~~~~~~---~~~~~~---------- 248 (321)
T PRK07048 182 GGGLLSGCALAARALSPGCKVYGVEPEAGNDAQQSFRSGEIVHIDTPRTIADGAQTQHLGN---LTFPII---------- 248 (321)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCH---HHHHHH----------
T ss_conf 6107899999999728987799977787477998885699154588763234545787748---899999----------
Q ss_pred HHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC-CCCCE-EEEEC
Q ss_conf 875202651055202211000121342138899999999999863959838339999999998747-99839-99971
Q gi|254780465|r 335 FYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS-SSTPM-VTLAT 410 (469)
Q Consensus 335 m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~-~~~p~-VvLAT 410 (469)
+ +.. -....|+|+|+..+++.++++.|.+++|..|++++++.+.+.. .+..+ |+|+-
T Consensus 249 -~----------------~~v--d~~v~V~d~ei~~a~~~L~~~~gl~vEpsgA~~~Aall~~~~~~~g~~VvvilsG 307 (321)
T PRK07048 249 -Q----------------RLV--DDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKDPLAGKRVGVIISG 307 (321)
T ss_pred -H----------------HHC--CCCEEECHHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHCHHHCCCCEEEEEECC
T ss_conf -9----------------828--9817788999999999999975918817699999999958155299939999798
No 23
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=99.79 E-value=5.9e-17 Score=137.92 Aligned_cols=313 Identities=13% Similarity=0.018 Sum_probs=181.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECC---C-----CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 7899899999999986304766786047724---8-----8254662138981206823888999999997317982079
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYHCFRNAAVTPLIQLN---A-----NEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITI 136 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~---~-----~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~i 136 (469)
....+.+..+-+.+.|..|-.+ ++||.+.. + ++|+=-=...||+||||.++..... ..++.+.+.+|
T Consensus 12 ~~~~~~~~~~e~~~~~~~~~gr-pTPL~~a~~L~~~lg~a~iy~K~E~~NPTGSfKdR~a~~~v~----~A~~~G~~~vi 86 (365)
T cd06446 12 KERYDPDFPEELRELYKDYVGR-PTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQAL----LAKRMGKKRVI 86 (365)
T ss_pred HHHCCCHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHH----HHHHCCCCEEE
T ss_conf 9854915689999999862899-976776888887508866999866889888750767999999----99980985487
Q ss_pred EECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH--HHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCH---HHH
Q ss_conf 97166540467999861667855999735776760--3321311344787089971796588899999975015---431
Q gi|254780465|r 137 VGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDV---FFC 211 (469)
Q Consensus 137 l~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~--~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~---~~~ 211 (469)
..++||.||+|++.+.+ +-+++++|+-|...+.. .+..+|... |-+ ++.|+|++......+.+.+.+. .-.
T Consensus 87 a~t~aGN~g~a~A~~aA-~~Gl~~~I~mp~~~~~~~~~~~~~m~~y-GA~--Vv~v~~~~gtl~~ai~ea~~~~~~~~~~ 162 (365)
T cd06446 87 AETGAGQHGVATATACA-LFGLECEIYMGAVDVERQPLNVFRMELL-GAE--VVPVPSGSGTLKDAISEAIRDWVTNVED 162 (365)
T ss_pred ECCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCHHHHHHHHC-CCE--EEEECCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 24685299999999999-8699479994477423341789999975-987--9996589820899999999999956453
Q ss_pred CCCCCCCCCCCCHHH---CCCCHHHHHHHHHHHCCC--CCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC-CCH
Q ss_conf 358311345565444---011055899999874477--88738996346578878866777508987705872367-633
Q gi|254780465|r 212 HSVNLSGINSINWAR---IMAQIVYYFVSSIALGSP--NRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNE-NDT 285 (469)
Q Consensus 212 ~~~~l~s~NSIN~~R---il~Q~vyYf~a~~~~~~~--~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~-Ndi 285 (469)
..+.++|+++.++.+ +..|.+--+...-|+.+. .-|-.+++|+|+-||+.+.|.+. +..+--++|...=. -..
T Consensus 163 ~~y~~gs~~~p~p~~~~v~~~q~tig~Ei~eQl~~~~g~~PD~vv~pvGgGgn~~G~~~~F-~~~~~~~~igve~~g~~~ 241 (365)
T cd06446 163 THYLLGSVVGPHPYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPF-INDKDVKLIGVEAGGCGL 241 (365)
T ss_pred CEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHEECCC-CCCCCCCEEEECCCCCCC
T ss_conf 4002563037898713777643389999999999962999889997878764212021145-557653167653456776
Q ss_pred H----HHHHHCCC---------H-------HCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 5----67753222---------0-------10234556564200134013788999870970899999987520265105
Q gi|254780465|r 286 L----VRMFDMGM---------Y-------RPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFR 345 (469)
Q Consensus 286 L----~rf~~tG~---------y-------~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~ 345 (469)
+ ...+..|. | ... ...|++..+|+ |+....+-| +.+.|.
T Consensus 242 ~~~~~aa~~~~g~~g~~p~~~~~~~~~~~~~~~-~~~siA~gLr~--pg~gp~~~~----------------l~~~g~-- 300 (365)
T cd06446 242 ETGGHAAYLFGGTAGVLHGLKMYTLQDEDGQIV-PPHSISAGLDY--PGVGPEHAY----------------LKDSGR-- 300 (365)
T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCC-CCCCCCCCCCC--CCCCHHHHH----------------HHHCCC--
T ss_conf 668752000289755240066676236568886-88544457677--887779999----------------997298--
Q ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH--HCCCCCEEEEECCCCCCCHHHH
Q ss_conf 52022110001213421388999999999998639598383399999999987--4799839999718843498889
Q gi|254780465|r 346 IDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR--KSSSTPMVTLATAHPSKFPDTV 420 (469)
Q Consensus 346 i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~--~~~~~p~VvLATAHPaKFpe~V 420 (469)
....+|+|+|+++++|.+.+..|++..|-+|.+++++.++. ...+..+|+.-|-|-.|-+|+|
T Consensus 301 ------------~~~~~VsD~Eil~a~~~La~~EGIf~ep~sa~avA~~~kla~~~~~~~~VV~~ltG~GlKD~~~v 365 (365)
T cd06446 301 ------------VEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKLGKEKVIVVNLSGRGDKDLQTV 365 (365)
T ss_pred ------------EEEEEECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCC
T ss_conf ------------49998699999999999998379555535799999999998774999879999578985676559
No 24
>PRK06815 hypothetical protein; Provisional
Probab=99.79 E-value=3.7e-16 Score=132.43 Aligned_cols=291 Identities=18% Similarity=0.135 Sum_probs=183.2
Q ss_pred HHHHHHHHHHCC-CCCCCEEEECC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 999999863047-66786047724-------8825466213898120682388899999999731798207997166540
Q gi|254780465|r 73 RDIVNRSYHCFR-NAAVTPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDT 144 (469)
Q Consensus 73 ~~ii~~ay~~f~-~~~~~pl~~l~-------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDT 144 (469)
-+=|.+||..-+ +=..+||.++. -+.|+=-=+.-||+||||.++.-+-+ .+.+..++..|++||||.|
T Consensus 5 ~~~i~~a~~~i~~~i~~TPL~~~~~Ls~~~g~~i~~K~E~~nptGSfKdRgA~~~i~----~l~~~~~~~gVv~aSsGN~ 80 (318)
T PRK06815 5 FDAILEAHQALRPQVRVTPLEHSPLLSAHTGCEIYLKCEHLQHTGSFKFRGASNKLR----LLPEAQRQQGVITASSGNH 80 (318)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHH----HHHHHCCCCEEEEECCCCH
T ss_conf 999999999871858888002177764986998999852479746899999999999----9887122574899368837
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCH
Q ss_conf 46799986166785599973577676033213113447870899717965888999999750154313583113455654
Q gi|254780465|r 145 GAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINW 224 (469)
Q Consensus 145 GsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~ 224 (469)
|.|.+.+.+ ..++++.|+-|++ +|+.-..+|-...+ . ++.++|+++++....+++-.+.. .+.+...|. +
T Consensus 81 G~alA~~aa-~~G~~~~IvvP~~-~s~~Ki~~i~~~GA-~--Vi~v~~~~~~~~~~a~~~a~~~g---~~~v~~~~~--p 150 (318)
T PRK06815 81 GQGVALAAK-LAGIPVTIYAPEQ-ASAIKLDAIRALGA-E--VELVSGDALNAELAARRAAEQQG---KVYISPYND--P 150 (318)
T ss_pred HHHHHHHHH-HCCCCEEEEECCC-CCHHHHHHHHHHCC-C--EEEECCCHHHHHHHHHHHHHHHC---CCCCCCCCC--H
T ss_conf 999999999-8399779992798-86999999998099-3--79728988999999999998513---411588897--4
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH-HHCCCCCCEEEEE-CCCCCHHHHHHHCCCHHCCCCCC
Q ss_conf 440110558999998744778873899634657887886677-7508987705872-36763356775322201023455
Q gi|254780465|r 225 ARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMA-KMMGLPIEKLIIA-TNENDTLVRMFDMGMYRPEIVME 302 (469)
Q Consensus 225 ~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~A-k~MGLPI~kli~A-tN~NdiL~rf~~tG~y~~~~~~~ 302 (469)
-.+.+|-..-..-+-|+ .+...++||.|.-|.+.+-.-+ |.++ |--+++.. .-....+++.+..|...+.+..+
T Consensus 151 ~~~~g~~t~~~EI~eQ~---~~~d~vvv~vG~GG~i~Gi~~~lk~~~-~~~~ivgvep~~~~~~~~s~~~g~~~~~~~~~ 226 (318)
T PRK06815 151 QVIAGQGTIGMELVEQQ---PDLDAVFVAVGGGGLISGIATVLKALS-PKTQIIGCWPANAPSLYTSLEAGEIVEVAEQE 226 (318)
T ss_pred HHHHHHHHHHHHHHHHC---CCCCEEEEECCCCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 26655433999999863---699889992488247889999898648-98679997368877899999769812566677
Q ss_pred CCCCCCCCCC-HHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 6564200134-013788999870970899999987520265105520221100012134213889999999999986395
Q gi|254780465|r 303 TTSPAMDIQI-PSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNY 381 (469)
Q Consensus 303 T~SpsMDI~v-~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gy 381 (469)
|++-++-.++ |++. -|.+ .++.. -....|+|+|+.++++.++++.|.
T Consensus 227 ti~~g~~~~~~~~~~---~~~~---------------------------~~~~~--d~~v~Vsd~e~~~a~r~L~~~egi 274 (318)
T PRK06815 227 TLSDGTAGGVEPGAI---TFPL---------------------------CQQLI--DQKVLVSEQEIKAAMRLIARTDRW 274 (318)
T ss_pred CCCCCCCCCCCCCCC---CHHH---------------------------HHHCC--CEEEEECHHHHHHHHHHHHHHCCC
T ss_conf 503554457677845---4888---------------------------85328--849998999999999999998495
Q ss_pred EECCCHHHHHHHHHHHHHC-CCCCEEEEECCCC
Q ss_conf 9838339999999998747-9983999971884
Q gi|254780465|r 382 LVDPHTAVGIHAALACRKS-SSTPMVTLATAHP 413 (469)
Q Consensus 382 iiDPHTAvG~~aa~~~~~~-~~~p~VvLATAHP 413 (469)
++.|.+|+++.++.++... .+..+|++-|---
T Consensus 275 ~ve~ssa~alAa~~kl~~~~~g~~vv~il~G~n 307 (318)
T PRK06815 275 IIEGAAGVALAAALKLAPQYQGKKVAVVLCGKN 307 (318)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 886999999999996336749990999938899
No 25
>PRK06381 threonine synthase; Validated
Probab=99.78 E-value=2e-16 Score=134.24 Aligned_cols=287 Identities=20% Similarity=0.154 Sum_probs=177.6
Q ss_pred CCCCEEEECC--------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf 6786047724--------88254662138981206823888999999997317982079971665404679998616678
Q gi|254780465|r 86 AAVTPLIQLN--------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKR 157 (469)
Q Consensus 86 ~~~~pl~~l~--------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~ 157 (469)
+.-+||.++. .+.|+=-=+.-||+||||.++..+ +....+ .+. ..|+++|||+||.|++.+.+ ..+
T Consensus 13 ~~~TPL~~~~~L~~~lg~~~iy~K~E~~nptGSfKdR~A~~~---i~~a~~-~g~-~~iv~~SsGN~G~alA~~a~-~~G 86 (319)
T PRK06381 13 PPGTPLLKAYALRKKLNLDNIYLKYEGANPTGTQKDRIAEAH---VKRAIR-LGY-DTVTVGTCGNYGASIAYFAR-LYG 86 (319)
T ss_pred CCCCCEEEHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHH---HHHHHH-CCC-CEEEEECCCHHHHHHHHHHH-HHC
T ss_conf 988977487888887199769999768788878199999999---999997-699-96998677679999999999-969
Q ss_pred CEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 55999735776760332131134478708997179658889999997501543135831134556544401105589999
Q gi|254780465|r 158 INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVS 237 (469)
Q Consensus 158 i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a 237 (469)
+++.|+-|++ .++....+|....++ ++.++|++||+....+++..+..+.. .+..+.|+ ..++.+|..-....
T Consensus 87 i~~~I~mP~~-~~~~k~~~~~~~GAe---Vv~~~~~~~~a~~~~~~~a~~~g~~~-~~p~~~~~--~~~~~g~~ti~~EI 159 (319)
T PRK06381 87 IKAVIGVPRQ-YSNSRVDEMKSYGAE---VIYVDGKYEEAVEFSVDFAKDNGYYD-ANPGSVNS--AVDIEAYSLIAFEI 159 (319)
T ss_pred CCEEEEEECC-CCHHHHHHHHHHCCC---EEEECCCHHHHHHHHHHHHHHCCCEE-ECCCCCCC--HHHHHHHHHHHHHH
T ss_conf 9789998288-849999999972990---48769889999999999999739999-38888772--66788887699999
Q ss_pred HHHHCCCCCCEEEEEECCCHHHHHHHHHHH----HCCC--CCCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCC
Q ss_conf 987447788738996346578878866777----5089--87705872-3676335677532220102345565642001
Q gi|254780465|r 238 SIALGSPNRNISFSVPTGNFGDIFAGYMAK----MMGL--PIEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDI 310 (469)
Q Consensus 238 ~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak----~MGL--PI~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI 310 (469)
.-|+. ..+-.+++|.|+-|++.+.+.+- ..|. ++-|++.+ +...+.+.+-+..|..+..+.........++
T Consensus 160 ~eq~~--~~pD~vv~~vG~Gg~~~Gi~~g~~~~~~~~~~~~~prii~ve~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~ 237 (319)
T PRK06381 160 YEALG--SVPDYVAVPVGNGTTLAGIYYGFRRMYDMGIIDRMPRMVGASTSGGNQIVESWKRGSKEVVPLEVEEIRETDI 237 (319)
T ss_pred HHHHC--CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 99868--9999899978985779999999998875244677651798628997489999866985103777672125445
Q ss_pred CCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHCCCEECCCHHH
Q ss_conf 34013788999870970899999987520265105520221100012-13421388999999999998639598383399
Q gi|254780465|r 311 QIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLS-FSAKRASMEDVNSVIKSVLEKSNYLVDPHTAV 389 (469)
Q Consensus 311 ~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~-f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAv 389 (469)
..|.---| - + |+ ...++.+++. =....|+|+|+.+..+.++++.|++++|.+|+
T Consensus 238 ~~p~~~~~-~---~--~~-------------------~~~l~~i~~~~g~~~~Vsd~e~~~a~~~L~~~eGi~vepssa~ 292 (319)
T PRK06381 238 NEPLVSYR-S---F--DG-------------------QKALEAIRDSHGYAFYFSDDEMVKYSELLYRMEGLSPLPASAS 292 (319)
T ss_pred CCCCCCCC-C---C--CC-------------------HHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCEEECHHHHH
T ss_conf 67752125-7---6--81-------------------4569999970997999899999999999999589177158999
Q ss_pred HHHHHHHHHHC--CCCCEEEEECCC
Q ss_conf 99999998747--998399997188
Q gi|254780465|r 390 GIHAALACRKS--SSTPMVTLATAH 412 (469)
Q Consensus 390 G~~aa~~~~~~--~~~p~VvLATAH 412 (469)
++.++.++... .+..+|++=|-|
T Consensus 293 alAa~~~~~~~~~~~~~VV~vltG~ 317 (319)
T PRK06381 293 ALVALVRYLKKNGVNEEVVAVITGR 317 (319)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9999999998669859499991799
No 26
>PRK07476 threonine dehydratase; Provisional
Probab=99.76 E-value=2.2e-15 Score=127.04 Aligned_cols=279 Identities=18% Similarity=0.099 Sum_probs=176.2
Q ss_pred CCEE-EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 8254-662138981206823888999999997317982079971665404679998616678559997357767603321
Q gi|254780465|r 97 NEFL-LELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK 175 (469)
Q Consensus 97 ~~~v-lELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~ 175 (469)
+.|+ +|- .-||+||||.|+--+ +... .++.+...|+++|||++|.|.+.+.+ .-++++.|+-|+. +++....
T Consensus 38 ~v~~K~E~-~qptGSfK~RgA~~~---i~~~-~~~~~~~gvv~aSsGN~g~alA~aa~-~~G~~~~Iv~P~~-~~~~K~~ 110 (323)
T PRK07476 38 PVHLKLET-LQPTGSFKLRGATNA---LLSL-SAQERARGVVTASTGNHGRALAHAAR-ALGIRATICMSRL-VPANKVD 110 (323)
T ss_pred EEEEEECC-CCCCCCHHHHHHHHH---HHHH-HHHCCCCEEEEECCCHHHHHHHHHHH-HHCCEEEEECCCC-CHHHHHH
T ss_conf 79998501-697678099999999---9998-88646882899568677999999999-8399089988887-8399999
Q ss_pred CCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 31134478708997179658889999997501543135831134556544401105589999987447788738996346
Q gi|254780465|r 176 QMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTG 255 (469)
Q Consensus 176 qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtG 255 (469)
+|-...++ ++-+.+++|||+..+.++..+... ..+... -|...+.+|-.--+.-.-|+. +...++||.|
T Consensus 111 ~i~~~GA~---V~~~~~~~~ea~~~a~~~a~~~g~---~~i~p~--~~p~~i~G~~Tig~EI~eq~p---~~d~vvv~~G 179 (323)
T PRK07476 111 AIRALGAE---VRIVGDSQDDAQAEVERLVREEGL---TMVPPF--DDPRIIAGQGTLGLEILEALP---DVATVLVPLS 179 (323)
T ss_pred HHHHHCCC---CCEECCCHHHHHHHHHHHHHHCCC---EEECCC--CCHHHHHHCCHHHHHHHHHCC---CCCCEEEECC
T ss_conf 99982785---714347778999999999764386---760577--987788550079999998667---7553343048
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 578878866777508987705872-3676335677532220102345565642001340137889998709708999999
Q gi|254780465|r 256 NFGDIFAGYMAKMMGLPIEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEA 334 (469)
Q Consensus 256 NfGni~Ag~~Ak~MGLPI~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~ 334 (469)
.-|.+.+...+-|.--|--|++.. ...-+.+++.+..|.....+..+|++.++-.+++..- |+-|.+.
T Consensus 180 gGGl~~Gi~~~~k~~~p~~kvigVe~~~~~~~~~s~~~g~~~~~~~~~tiad~l~~gi~~~~-~~~~~~~---------- 248 (323)
T PRK07476 180 GGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDN-RYTFAMC---------- 248 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCC-HHHHHHH----------
T ss_conf 83589999998863179866999613887489999984995205998850020256888775-2158988----------
Q ss_pred HHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 87520265105520221100012134213889999999999986395983833999999999874799839999718843
Q gi|254780465|r 335 FYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPS 414 (469)
Q Consensus 335 m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~~~~p~VvLATAHPa 414 (469)
+.+-+ ....|+|+|+...++.++++.|.+++|..|++++++...+.....++|++=|-.=.
T Consensus 249 -----------------~~~~d--~~v~V~d~ei~~a~~~l~~~egi~vEpsgA~~lAal~~~~~~~~~~vvvilsGgNi 309 (323)
T PRK07476 249 -----------------RALLD--DVVLLDEAEIARGIRHAYREERLVVEGAGAVGIAALLAGKIRARGPIVVIVSGANI 309 (323)
T ss_pred -----------------HHHCC--CEEEECHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf -----------------85079--38998999999999999997693882889999999982973689978999899875
Q ss_pred CCHHHHHHHH
Q ss_conf 4988899980
Q gi|254780465|r 415 KFPDTVKAAS 424 (469)
Q Consensus 415 KFpe~V~~Ai 424 (469)
=++...+.+
T Consensus 310 -d~~~~~~~l 318 (323)
T PRK07476 310 -DMALHRRII 318 (323)
T ss_pred -CHHHHHHHH
T ss_conf -899999997
No 27
>PRK08246 threonine dehydratase; Provisional
Probab=99.75 E-value=8.4e-16 Score=129.91 Aligned_cols=266 Identities=16% Similarity=0.131 Sum_probs=167.9
Q ss_pred CCEEEECCC-------CCEE-EEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 860477248-------8254-66213898120682388899999999731798207997166540467999861667855
Q gi|254780465|r 88 VTPLIQLNA-------NEFL-LELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 88 ~~pl~~l~~-------~~~v-lELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
.+||.+... +.|+ +| ++-||+||||.|+. ...+..+.+...|+++|||++|.|.+.+.+ ..+++
T Consensus 20 ~TPl~~~~~l~~~~g~~v~lK~E-~~qptGSfK~RGa~------~~il~~~~~~~~vv~~SsGN~g~alA~~a~-~~G~~ 91 (307)
T PRK08246 20 RTPVLEVDGAGLGLPAPVWLKLE-HLQHTGSFKARGAF------NRLLARPVPAAGVVAASGGNHGAAVAYAAA-SLGVP 91 (307)
T ss_pred CCCEEECHHHCHHHCCEEEEEEC-CCCCCCCCHHHHHH------HHHHHHHCCCCCEEEECCCHHHHHHHHHHH-HCCCC
T ss_conf 89577753324121988999850-06987780999999------999854336995899678648999999999-81895
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CHHHCCCCHHHHHHHH
Q ss_conf 999735776760332131134478708997179658889999997501543135831134556-5444011055899999
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSI-NWARIMAQIVYYFVSS 238 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSI-N~~Ril~Q~vyYf~a~ 238 (469)
+.|+-|++ .|+.-..+|....+ .++-+++++|||....+++-.+. ...-+++- |...+.+|-..-+.-.
T Consensus 92 ~~I~mP~~-~~~~K~~~i~~~GA---eVi~~~~~~~~a~~~a~~~a~~~------g~~~v~~~~~p~~i~G~~T~~~EI~ 161 (307)
T PRK08246 92 ATVFVPEI-APPAKVDRLRDYGA---EVVVGGAEYADALAAAQAFAAET------GALQIHAYDQPETLAGAGTLALEIE 161 (307)
T ss_pred EEEEECCC-CHHHHHHHHHHCCC---EEEEECCCCHHHHHHHHHHHHHC------CCCCCCCCCCHHHHHHCCHHHHHHH
T ss_conf 69996386-36999999997598---79998687159999999987633------8443466668757742150999999
Q ss_pred HHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 87447788738996346578878866777508987705872-36763356775322201023455656420013401378
Q gi|254780465|r 239 IALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFE 317 (469)
Q Consensus 239 ~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfE 317 (469)
-|+. .+-.++||.|+-|.+.+...+-+ +. + |++.. ....+.+++.+..|.-...+...|.+.++ ..|.--+
T Consensus 162 eq~~---~~d~vvv~vGgGGl~~Gi~~~~~-~~-~-kiigVep~~~~~~~~s~~~g~~v~~~~~~~~a~~l--~~~~~g~ 233 (307)
T PRK08246 162 EQAP---GLDTVLVAVGGGGLIGGIAAWFE-GR-I-RVVAVEPEGAPTLHRALAAGEPVDVEVSGIAADSL--GARRVGE 233 (307)
T ss_pred HHCC---CCCEEEECCCCCCHHHHHHHHHH-HC-C-EEEEEEECCCHHHHHHHHCCCCEECCCCCCCCCCC--CCCCCCH
T ss_conf 8638---99989866887428999999973-02-6-36787406884688999779933268887115544--6897744
Q ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC-CCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHH
Q ss_conf 8999870970899999987520265105520221100012-134213889999999999986395983833999999999
Q gi|254780465|r 318 RLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLS-FSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALA 396 (469)
Q Consensus 318 Rllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~-f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~ 396 (469)
. .+..+++. -....|+|+|+...++.++++.|.++.|.+|++++++.+
T Consensus 234 ~-------------------------------~~~~~~~~~d~~v~Vsd~ei~~a~~~l~~~~gi~veps~a~alAall~ 282 (307)
T PRK08246 234 I-------------------------------AFDLARAHVVRSVLVSDEAIVAAQRALWDELRLVVEPGAATALAALLS 282 (307)
T ss_pred H-------------------------------HHHHHHHCCCEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 4-------------------------------434424128869999999999999999996680432899999999995
Q ss_pred HHH--CCCCCEEEEEC
Q ss_conf 874--79983999971
Q gi|254780465|r 397 CRK--SSSTPMVTLAT 410 (469)
Q Consensus 397 ~~~--~~~~p~VvLAT 410 (469)
... .++..+|++-|
T Consensus 283 ~~~~~~~g~~Vvvil~ 298 (307)
T PRK08246 283 GAYVPAPGERVAVVLC 298 (307)
T ss_pred CCCCCCCCCEEEEEEC
T ss_conf 6812289394999948
No 28
>PRK06608 threonine dehydratase; Provisional
Probab=99.67 E-value=1.3e-13 Score=114.69 Aligned_cols=273 Identities=16% Similarity=0.107 Sum_probs=169.7
Q ss_pred CCEEEEC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 8604772-------488254662138981206823888999999997317982079971665404679998616678559
Q gi|254780465|r 88 VTPLIQL-------NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINM 160 (469)
Q Consensus 88 ~~pl~~l-------~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v 160 (469)
.+||.+. +.+.|+=-=++-||+||||.|+.-+ +....+.......|++||||++|.|.+.+.+ .-++++
T Consensus 24 ~TPl~~~~~Ls~~~g~~v~lK~E~~qptGSfK~RGa~~~---i~~~~~~g~~~~~vv~aSsGNhG~alA~aa~-~~G~~~ 99 (330)
T PRK06608 24 LTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNH---LLELKEQGKLPDKIVAYSTGNHGIAVAYASK-LFGIKT 99 (330)
T ss_pred CCCEEEHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHH---HHHHHHCCCCCCCEEEECCCCHHHHHHHHHH-HCCCCE
T ss_conf 885535477789869989998514797688899999999---9999876987783798678866999999998-549863
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHH
Q ss_conf 99735776760332131134478708997179658889999997501543135831134556544401105589999987
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~ 240 (469)
.|+-|++ .|+....+|-.. |-.| +-++ +.+++...+++.-.+ ..+.+...|. ...+.+|-..-+...-|
T Consensus 100 ~I~mP~~-~~~~Ki~~i~~~-GAeV--i~~~-~~~~~~~~~~~~~~~----~~~~i~~~d~--~~~iaG~~Ti~~Ei~eq 168 (330)
T PRK06608 100 RIYLPLN-TSKVKQQAALYY-GGEV--ILTN-TRQEAEEKAKEDEKQ----GFYYIHPSDS--DSIIAGAGTLCYEALQQ 168 (330)
T ss_pred EEEECCC-CCHHHHHHHHHC-CCEE--EEEC-CHHHHHHHHHHHHHC----CCEEECCCCC--CCHHCCCCHHHHHHHHH
T ss_conf 8984565-889999999987-9999--9989-858999999986145----8889578788--00104643399999998
Q ss_pred HCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECC-CCCHHHHHHHCCCHH-CCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 44778873899634657887886677750898770587236-763356775322201-0234556564200134013788
Q gi|254780465|r 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATN-ENDTLVRMFDMGMYR-PEIVMETTSPAMDIQIPSNFER 318 (469)
Q Consensus 241 ~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN-~NdiL~rf~~tG~y~-~~~~~~T~SpsMDI~v~SNfER 318 (469)
+.. .+-.++||.|.-|.+.+.+.+.+-.-|--++|.+.- .-+.+++.+..|.-. ......|++..+....++ ++
T Consensus 169 ~~~--~~D~vvv~vGgGgl~~G~~~~~k~~~p~~~vigvEp~~a~~~~~s~~~G~~~~~~~~~~tiadGl~~~~~~--~~ 244 (330)
T PRK06608 169 LGF--SPDAIFASCGGGGLISGSYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVS--AR 244 (330)
T ss_pred HCC--CCCEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCCEEECCEECCCCC--HH
T ss_conf 199--98889954897247999999998529997899989888689999998399387057887565451458733--88
Q ss_pred HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH
Q ss_conf 99987097089999998752026510552022110001213421388999999999998639598383399999999987
Q gi|254780465|r 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR 398 (469)
Q Consensus 319 llf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~ 398 (469)
.|.+. +++ + ....|+|+|+...++.++++.|.++.|.+|++++++.+..
T Consensus 245 -~~~~~---------------------------~~~-d--~~v~V~d~ei~~a~~~L~~~~gi~vEps~a~alAall~~~ 293 (330)
T PRK06608 245 -TFEYL---------------------------KKL-D--DFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMASVVNWL 293 (330)
T ss_pred -HHHHH---------------------------HHC-C--CEEEECHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHC
T ss_conf -99999---------------------------628-9--7899899999999999999859698299999999999837
Q ss_pred --HCCCCCEEEEEC
Q ss_conf --479983999971
Q gi|254780465|r 399 --KSSSTPMVTLAT 410 (469)
Q Consensus 399 --~~~~~p~VvLAT 410 (469)
...+..+|++=|
T Consensus 294 ~~~~~~~~Vvvils 307 (330)
T PRK06608 294 KTQSKPQKLLVLLS 307 (330)
T ss_pred HHHCCCCEEEEECC
T ss_conf 75489896999907
No 29
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=99.67 E-value=5.5e-14 Score=117.32 Aligned_cols=261 Identities=18% Similarity=0.156 Sum_probs=158.6
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 8825466213898120682388899999999731798--20799716654046799986166785599973577676033
Q gi|254780465|r 96 ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDH--YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQ 173 (469)
Q Consensus 96 ~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~--~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q 173 (469)
-+.|+=-=++-||+||||.+... ++.+.+++... ..+|++||||++|.|.+.+.+ .-++++.|+-|.+ .++..
T Consensus 17 ~~i~~K~E~~~ptGSfK~Rga~~---~i~~a~~~g~~~~~~~vv~aSsGN~g~alA~~a~-~~Gi~~~I~~p~~-~~~~k 91 (291)
T cd01561 17 AEIYAKLEFFNPGGSVKDRIALY---MIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAA-AKGYRFIIVMPET-MSEEK 91 (291)
T ss_pred CEEEEEECCCCCCCCCHHHHHHH---HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH-HCCCCEEEECCCC-CHHHH
T ss_conf 98999956889777869999999---9999998199889978998089847999999999-8099838964763-06999
Q ss_pred HCCCEEECCCCEEEEEECC----CHHHHHHHHHHHHCCHHHHCCCCCCC--CCCCCHHHCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 2131134478708997179----65888999999750154313583113--45565444011055899999874477887
Q gi|254780465|r 174 QKQMTTSEASNINVIAVQS----SFDDCQKIVKNLFSDVFFCHSVNLSG--INSINWARIMAQIVYYFVSSIALGSPNRN 247 (469)
Q Consensus 174 ~~qmtt~~~~Nv~~i~v~G----~FDDcq~~Vk~~f~D~~~~~~~~l~s--~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~ 247 (469)
..+|-.. |-+ ++.++| +.++|...++++..+.. ...... -|-.|| +-.|-.--+..+-|+.. .+
T Consensus 92 ~~~i~~~-GA~--Vv~v~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~n~~~~--~~~~~t~g~Ei~eQl~~--~~ 161 (291)
T cd01561 92 RKLLRAL-GAE--VILTPEAEADGMKGAIAKARELAAETP---NAFWLNQFENPANP--EAHYETTAPEIWEQLDG--KV 161 (291)
T ss_pred HHHHHHC-CCE--EEEECCCCCCCHHHHHHHHHHHHHHCC---CCEEEECCCCCHHH--HHHCCHHHHHHHHHCCC--CC
T ss_conf 9999966-988--999779888789999999999998579---93884357893577--77501199999998599--87
Q ss_pred EEEEEECCCHHHHHHHHHHH-HCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHHC
Q ss_conf 38996346578878866777-50898770587236763356775322201023455656420013-40137889998709
Q gi|254780465|r 248 ISFSVPTGNFGDIFAGYMAK-MMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQ-IPSNFERLLFEISG 325 (469)
Q Consensus 248 i~f~VPtGNfGni~Ag~~Ak-~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~-v~SNfERllf~l~~ 325 (469)
-.+++|.|+-|.+.+.+.+- ..+-.+ |+|.+.=.+-.. +.......+..+.+..+ +|.++++-+
T Consensus 162 d~vv~pvG~Gg~~~Gi~~~~k~~~p~~-~iigVep~~s~~--------~~~~~~~~~~~~gi~~~~~~~~~~~~~----- 227 (291)
T cd01561 162 DAFVAGVGTGGTITGVARYLKEKNPNV-RIVGVDPVGSVL--------FSGGPPGPHKIEGIGAGFIPENLDRSL----- 227 (291)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEECCCCHH--------HCCCCCCCCCCCCCCCCCCCHHHHHHC-----
T ss_conf 464405686278999999999729998-799990488712--------117898885235656665624440311-----
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHH--HCCCC
Q ss_conf 7089999998752026510552022110001213421388999999999998639598383399999999987--47998
Q gi|254780465|r 326 RNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACR--KSSST 403 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~--~~~~~ 403 (469)
+ -....|+|+|+...++.++++.|.++.|.+|+++.++++.. ...+.
T Consensus 228 --------------------v-----------d~~~~V~d~e~~~a~~~l~~~~gi~veps~a~~laa~~~~~~~~~~~~ 276 (291)
T cd01561 228 --------------------I-----------DEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKLAKRLGPGK 276 (291)
T ss_pred --------------------C-----------CEEEEECHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHCCCC
T ss_conf --------------------8-----------779996999999999999998099883659999999999988719859
Q ss_pred CEEEEECCCCCCC
Q ss_conf 3999971884349
Q gi|254780465|r 404 PMVTLATAHPSKF 416 (469)
Q Consensus 404 p~VvLATAHPaKF 416 (469)
.+|++-|-|..|.
T Consensus 277 ~Vvvil~~~G~kY 289 (291)
T cd01561 277 TIVTILPDSGERY 289 (291)
T ss_pred EEEEEECCCCCCC
T ss_conf 8999979997055
No 30
>PRK10717 cysteine synthase A; Provisional
Probab=99.63 E-value=1.1e-13 Score=115.14 Aligned_cols=280 Identities=19% Similarity=0.205 Sum_probs=171.2
Q ss_pred CEEEECC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 6047724-------882546621389812068238889999999973179--8207997166540467999861667855
Q gi|254780465|r 89 TPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERD--HYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 89 ~pl~~l~-------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~--~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
+||.++. .+.|+=-=+.-||+||||.++..+ +....++.. ...+|+.||||.||.|.+.+.+ ..+++
T Consensus 14 TPLv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~A~~~---i~~a~~~G~l~~g~~vveaSSGN~g~alA~~a~-~~G~~ 89 (334)
T PRK10717 14 TPLIRLNRASEETGCEILGKAEFLNPGGSVKDRAALNI---IRDAEKRGLLKPGGTIVEGTAGNTGIGLALVAA-ARGYK 89 (334)
T ss_pred CCEEECCCCCHHHCCEEEEEECCCCCCCCCHHHHHHHH---HHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH-HCCCC
T ss_conf 98677877554339989998435897568199999999---999998399889988998279738999999999-80996
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEECCC----HHHHHHHHHHHHCCHHHHCCCCCCCC----CCCCHHHCCCCH
Q ss_conf 9997357767603321311344787089971796----58889999997501543135831134----556544401105
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAVQSS----FDDCQKIVKNLFSDVFFCHSVNLSGI----NSINWARIMAQI 231 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~----FDDcq~~Vk~~f~D~~~~~~~~l~s~----NSIN~~Ril~Q~ 231 (469)
+.|+-|.+ +|+....+|....+ + ++.|++. .++-+....++-........-+..-+ |-.|+ .
T Consensus 90 ~~iv~p~~-~~~~k~~~i~~~GA-e--Vi~v~~~~~~~~~~~~~~a~~~a~e~~~~~~~~~~~~~qf~n~~n~------~ 159 (334)
T PRK10717 90 TVIVMPET-QSQEKKDLLRALGA-E--LVEVPAVPYTNPNNYVKGAGRLAEELAASEPNGAIWANQFDNPANR------E 159 (334)
T ss_pred EEEEECCC-CHHHHHHHHHHCCC-E--EEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCHHHH------H
T ss_conf 59995685-45999999997598-3--9976885667853126999999999865147982970777886778------8
Q ss_pred HHHHHHHHHHCCC-CCCE-EEEEECCCHHHHHHHH-HHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 5899999874477-8873-8996346578878866-77750898770587236763356775322201023455656420
Q gi|254780465|r 232 VYYFVSSIALGSP-NRNI-SFSVPTGNFGDIFAGY-MAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 232 vyYf~a~~~~~~~-~~~i-~f~VPtGNfGni~Ag~-~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
.+|-+...++.++ ...+ .|++|.|.-|.+.+.. +.|.++-.+ |++.+.=++-.++..+..|+.... ..|+...+
T Consensus 160 ah~~ttg~EI~~ql~g~iD~~V~~vGtGG~i~Gi~~~lk~~~p~~-~vi~vep~gS~~~~~~~~g~~~~~--~~~~~~Gi 236 (334)
T PRK10717 160 AHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKI-RIVLADPTGSALYSYYKTGELKAE--GSSITEGI 236 (334)
T ss_pred HHCCCCHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCC-EEEEEECCCCCCHHHHHCCCCCCC--CCCCCCCC
T ss_conf 870686999997546887757631158623899999999759998-899980178631023205864689--86001357
Q ss_pred CCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCH
Q ss_conf 013-4013788999870970899999987520265105520221100012134213889999999999986395983833
Q gi|254780465|r 309 DIQ-IPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHT 387 (469)
Q Consensus 309 DI~-v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHT 387 (469)
-++ +|.|+++.+. -....|+|+|...+++.++++.|.++-|-+
T Consensus 237 g~~~v~~~~~~~~i------------------------------------D~~~~Vsd~ea~~~~~~L~~~eGi~vg~Ss 280 (334)
T PRK10717 237 GQGRITANLEGAPI------------------------------------DDAIRIPDEEALSIAYRLLEEEGLCLGGSS 280 (334)
T ss_pred CCCCCCHHHCCCCC------------------------------------EEEEEECHHHHHHHHHHHHHHHCCEECHHH
T ss_conf 87766311032004------------------------------------289998999999999999998396773079
Q ss_pred HHHHHHHHHHHH--CCCCCEEEEECCCCCCCHHHHH
Q ss_conf 999999999874--7998399997188434988899
Q gi|254780465|r 388 AVGIHAALACRK--SSSTPMVTLATAHPSKFPDTVK 421 (469)
Q Consensus 388 AvG~~aa~~~~~--~~~~p~VvLATAHPaKFpe~V~ 421 (469)
++++.|+.++.. ..+..+|++.|-+.-|.-++|.
T Consensus 281 ga~~aaa~~~~~~~~~g~~VV~Il~D~G~rYlst~~ 316 (334)
T PRK10717 281 GINVAAAVRLARELGPGHTIVTILCDSGERYQSKLF 316 (334)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 999999999998709869799997989743453466
No 31
>PRK08639 threonine dehydratase; Validated
Probab=99.63 E-value=9.8e-13 Score=108.65 Aligned_cols=296 Identities=15% Similarity=0.169 Sum_probs=185.4
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 48825466213898120682388899999999731798207997166540467999861667855999735776760332
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ 174 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~ 174 (469)
+.+.|+=-=.+-||+|||+.|+-- .+.. |..++++--|++||+|+.|.+.+.|.+ .-++++.|+-|++ ++.++
T Consensus 39 g~~v~lK~E~lQ~tgSFK~RGA~n---~i~~-L~~e~~~~GVV~aSaGNHaqgvA~aa~-~lgi~a~IvmP~~--tp~~K 111 (418)
T PRK08639 39 GANVYLKREDLQPVRSYKLRGAYN---AISQ-LSDEEKAAGVVCASAGNHAQGVAYACR-HLGIPGVIFMPVT--TPKQK 111 (418)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHH---HHHH-CCHHHHCCCEEEECCCHHHHHHHHHHH-HHCCCEEEEECCC--CHHHH
T ss_conf 997999850279877766999999---9983-786661781899778589999999999-8399689993666--75999
Q ss_pred CCCEE-ECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCE-EEEE
Q ss_conf 13113-447870899717965888999999750154313583113455654440110558999998744778873-8996
Q gi|254780465|r 175 KQMTT-SEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNI-SFSV 252 (469)
Q Consensus 175 ~qmtt-~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i-~f~V 252 (469)
.+.+. ..++.|.++-+..+||+|....+++-.+. ....+...|- +--|.+|-.--..-.-|+ .+++ .+.|
T Consensus 112 i~~~r~~Ga~~veV~l~G~~~dea~~~A~~~a~~~---g~~~i~pfdd--~~vIaGqGTiglEI~eq~---~~~~D~vvv 183 (418)
T PRK08639 112 IDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEET---GATFIPPFDD--PDVIAGQGTVAVEILEQL---EEEPDYVFV 183 (418)
T ss_pred HHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHC---CCCCCCCCCC--CCHHHCCHHHHHHHHHHC---CCCCCEEEE
T ss_conf 99999629966999971898799999999999970---9714587788--344632146999999856---887888999
Q ss_pred ECCCHHHHHH-HHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 3465788788-667775089877058-72367633567753222010234556564200134013788999870970899
Q gi|254780465|r 253 PTGNFGDIFA-GYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLL 330 (469)
Q Consensus 253 PtGNfGni~A-g~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~ 330 (469)
|.|.-|-+.+ +.+.|.+.=.+ |+| |-...-+.+++-+..|....-+...|++-..-+..+.. +-
T Consensus 184 pvGGGGLiaGia~~lK~~~P~i-kIiGVEp~~a~~m~~Sl~~g~~v~~~~~~t~aDG~av~~~G~---~t---------- 249 (418)
T PRK08639 184 PVGGGGLISGVTTYLKEVSPKT-KVIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGD---LT---------- 249 (418)
T ss_pred EECCCHHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH---HH----------
T ss_conf 6187368999999998509997-189981589768999998599600687676113343354556---78----------
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC-CCCCEE-E
Q ss_conf 9999875202651055202211000121-342138899999999999863959838339999999998747-998399-9
Q gi|254780465|r 331 VKEAFYSLENKKYFRIDSEHLQKMSLSF-SAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS-SSTPMV-T 407 (469)
Q Consensus 331 v~~~m~~l~~~g~~~i~~~~l~~l~~~f-~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~-~~~p~V-v 407 (469)
+.-+++.. .--.|+|+|+..+|+.+|++.+.+++|..|++++|+.++... .+.++| +
T Consensus 250 --------------------f~i~~~~vd~iv~V~e~eI~~Am~~l~e~~k~vvEpaGA~~lAal~~~~~~~~gk~Vv~i 309 (418)
T PRK08639 250 --------------------FEILKDVVDDVILVPEGAVCTTILELYNKEGIVAEPAGALSIAALDEYKDEIKGKTVVCV 309 (418)
T ss_pred --------------------HHHHHHHCCCCEEECHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHCCCEEEEE
T ss_conf --------------------999986289707728999999999999965982245289999999846155269809999
Q ss_pred EECC--CCCCCHHHHHHHH---CC-------CCCCCHHHHHHHC
Q ss_conf 9718--8434988899980---87-------9888988988741
Q gi|254780465|r 408 LATA--HPSKFPDTVKAAS---GI-------VPDCPISLEQMMR 439 (469)
Q Consensus 408 LATA--HPaKFpe~V~~Ai---g~-------~~~~P~~L~~l~~ 439 (469)
++-+ -....+.++++++ |. -|+.|-.|+++.+
T Consensus 310 lsGgNiD~~~l~~i~er~l~~~gr~~~~~v~~pd~PG~l~~f~~ 353 (418)
T PRK08639 310 ISGGNNDIERMPEIKERSLRYEGLKHYFIVNFPQRPGALREFLD 353 (418)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 81588898899999999878629869999978999976999999
No 32
>PRK11761 cysM cysteine synthase B; Provisional
Probab=99.56 E-value=2.5e-12 Score=105.81 Aligned_cols=263 Identities=16% Similarity=0.193 Sum_probs=163.5
Q ss_pred CEEEECC-------CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 6047724-------882546621389812068238889999999973179--8207997166540467999861667855
Q gi|254780465|r 89 TPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERD--HYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 89 ~pl~~l~-------~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~--~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
+||.+++ .+.|+=-=+..||+||||.++.. ++.+..++.. .-.+|+.||||.||.|.+.+.+ ..+++
T Consensus 13 TPLi~l~~l~~~~g~~i~~K~E~~nptGS~KdR~A~~---~i~~a~~~G~l~~g~~vveaSSGN~g~alA~~a~-~~G~~ 88 (296)
T PRK11761 13 TPLVKLQRLPPDTGNEILAKLEGNNPAGSVKDRPALS---MIVQAEKRGEIKPGDTLIEATSGNTGIALAMAAA-IKGYR 88 (296)
T ss_pred CCEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHH---HHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH-HCCCE
T ss_conf 9848887677443988999862579745829999999---9999997499899987999378867999999999-81974
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCC-CCCCCCHHHCCCCHHHHHHHH
Q ss_conf 9997357767603321311344787089971796588899999975015431358311-345565444011055899999
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLS-GINSINWARIMAQIVYYFVSS 238 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~-s~NSIN~~Ril~Q~vyYf~a~ 238 (469)
++|.-|.+ +|+..+++|... |-.|..+.-++.++...++.+++-.+... +.+. -.|.-|| ..+|-+..
T Consensus 89 ~~iv~p~~-~s~~k~~~l~~~-GAeVi~~~~~~~~~~ar~~a~~l~~~~~~---~~~~Q~~N~~N~------~ah~~ttg 157 (296)
T PRK11761 89 MKLIMPEN-MSQERRAAMRAY-GAELILVPKEQGMEGARDLALQMQAEGKG---KVLDQFNNPDNP------YAHYETTG 157 (296)
T ss_pred EEEECCCC-CCHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHHHHHCCCC---EECCCCCCHHHH------HHHCCCHH
T ss_conf 79967865-788999999974-99557417774568999999999873497---843677885667------77546739
Q ss_pred HHHCCC--CCCEEEEEECCCHHHHHHHHHH-HHCCCCCCEEEEECCC-CCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHH
Q ss_conf 874477--8873899634657887886677-7508987705872367-63356775322201023455656420013401
Q gi|254780465|r 239 IALGSP--NRNISFSVPTGNFGDIFAGYMA-KMMGLPIEKLIIATNE-NDTLVRMFDMGMYRPEIVMETTSPAMDIQIPS 314 (469)
Q Consensus 239 ~~~~~~--~~~i~f~VPtGNfGni~Ag~~A-k~MGLPI~kli~AtN~-NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~S 314 (469)
.++.++ ++.-.|++|.|.-|.+.+-+-+ |...-.+ |++...-. ...++ |. ....++ -+|.
T Consensus 158 ~EI~~q~~g~id~~V~~vGtGGti~Gia~~lK~~~p~v-kvvgveP~~gs~i~-----Gi-------~~~~~~---~~p~ 221 (296)
T PRK11761 158 PEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAV-QIVGLQPEEGSSIP-----GI-------RRWPEE---YLPK 221 (296)
T ss_pred HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCC-----CC-------CCCCCC---CCCC
T ss_conf 99999748983399984277088999999999758999-89998128677576-----86-------656534---3775
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHH
Q ss_conf 37889998709708999999875202651055202211000121342138899999999999863959838339999999
Q gi|254780465|r 315 NFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAA 394 (469)
Q Consensus 315 NfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa 394 (469)
.+++ ..+ -.-..|+|+|..++.|.+.++.|.++-|-+|+++.++
T Consensus 222 ~~~~---------------------------------~~v---D~~~~V~d~ea~~~~r~La~~eGi~vG~Ssga~laaa 265 (296)
T PRK11761 222 IFDA---------------------------------SRV---DRVLDISQAEAENTMRRLAREEGIFCGVSSGGAVAAA 265 (296)
T ss_pred CCCC---------------------------------CCC---CEEEECCHHHHHHHHHHHHHHHCCEEEHHHHHHHHHH
T ss_conf 3565---------------------------------558---7899848899999999999984908717899999999
Q ss_pred HHHHH-CCCCCEEEEECCCCCCCHH
Q ss_conf 99874-7998399997188434988
Q gi|254780465|r 395 LACRK-SSSTPMVTLATAHPSKFPD 418 (469)
Q Consensus 395 ~~~~~-~~~~p~VvLATAHPaKFpe 418 (469)
.++.. .++..+|++.|-+..|.-+
T Consensus 266 ~~~a~~~~~~~vV~i~~D~G~rYls 290 (296)
T PRK11761 266 LRVAREVPNAVIVAIICDRGDRYLS 290 (296)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCC
T ss_conf 9999888989799998899822278
No 33
>PRK08526 threonine dehydratase; Provisional
Probab=99.53 E-value=5.2e-12 Score=103.63 Aligned_cols=292 Identities=17% Similarity=0.160 Sum_probs=183.6
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH--HHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 48825466213898120682388899999999--7317982079971665404679998616678559997357767603
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHI--LEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVV 172 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~--l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~ 172 (469)
+.+.|+=-=.+-||+|||..|+ ++.. |..+.++.-|++|++|+.|.|.+.|.+ .-++++.|+-|++ .+.
T Consensus 34 g~~v~lK~EnlQ~tGSFK~RGA------~n~i~~L~~e~~~~GVVaaSaGNHaqgvA~aa~-~lgi~a~IvmP~~-ap~- 104 (403)
T PRK08526 34 GAEIYLKKENLQITGAYKIRGA------YNKIANLSEEQKQHGVIAASAGNHAQGVAISAK-HFGIKAVIVMPES-TPL- 104 (403)
T ss_pred CCEEEEEECCCCCCCCCHHHHH------HHHHHHCCHHHHCCCEEEECCCHHHHHHHHHHH-HHCCCEEEEECCC-CCH-
T ss_conf 9979998603787676358999------999985666665481799778628999999999-7099889995666-869-
Q ss_pred HHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 321311344787089971796588899999975015431358311345565-4440110558999998744778873899
Q gi|254780465|r 173 QQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSPNRNISFS 251 (469)
Q Consensus 173 Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~~~~i~f~ 251 (469)
++.+.+-..|-+ ++-...+||+|....+++-.+. +++-++.-| +--+.+|-..-..-.-|+.+ .-.+.
T Consensus 105 ~Kv~~~r~~GA~--Vil~g~~~~ea~~~A~~~a~~~------g~~~ihpfdd~~vIaGqGTiglEileq~~d---~D~vv 173 (403)
T PRK08526 105 LKVSGTKALGAE--VILKGDNFDEAYAFALEYAKEN------NLTFIHPFEDEEVMAGQGTIALEMLDEISD---LDMIV 173 (403)
T ss_pred HHHHHHHHCCCE--EEEECCCHHHHHHHHHHHHHHH------CCCCCCCCCCHHHHCCCCCHHHHHHHHCCC---CCEEE
T ss_conf 999999826988--9997898589999999999860------430548357865762532389999975568---99899
Q ss_pred EECCCHHHHHHHH-HHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 6346578878866-7775089877058-7236763356775322201023455656420013401378899987097089
Q gi|254780465|r 252 VPTGNFGDIFAGY-MAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSL 329 (469)
Q Consensus 252 VPtGNfGni~Ag~-~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~ 329 (469)
||.|.-|-+.+-- .+|.+.=.+ |+| |-...-+.+++-+..|.....+...|++-..-+..+... -|.+
T Consensus 174 vpvGGGGLisGia~a~K~~~P~i-kViGVEpe~a~~m~~Sl~~g~~v~~~~~~tiaDGlav~~~g~~---tf~i------ 243 (403)
T PRK08526 174 VPVGGGGLISGIASAAKQINPNI-KIIGVGAKGAPAMKESFHAKKIKNSKSVRTIADGIAVRDASPI---TLAI------ 243 (403)
T ss_pred ECCCCCCHHHHHHHHHHHHCCCC-CEEEECCCCCHHHHHHHHCCCCEECCCCCCEECCCCCCCCCHH---HHHH------
T ss_conf 85888616899999998629988-3899664787689999876994534887824034235766625---6999------
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC--CCCCEE-
Q ss_conf 99999875202651055202211000121342138899999999999863959838339999999998747--998399-
Q gi|254780465|r 330 LVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS--SSTPMV- 406 (469)
Q Consensus 330 ~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~--~~~p~V- 406 (469)
..+.-+ .--.|+|+|+..+|+.+|++.+.+++|..|+|++|+.+.+.. .+..++
T Consensus 244 ---------------------~~~~vD--~iv~V~e~eI~~A~~~l~e~~k~vvEpaGA~~lAAll~~~~~~~~gk~Vv~ 300 (403)
T PRK08526 244 ---------------------ILECVD--DFVQVDDEEIANAILFLLEKQKIVVEGAGAAGVAALLHQKINLQKGAKIGV 300 (403)
T ss_pred ---------------------HHHCCC--CEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEE
T ss_conf ---------------------997089--679979999999999999856644257437999999727620116997999
Q ss_pred EE--ECCCCCCCHHHHHHHHCC----------CCCCCHHHHHHHC
Q ss_conf 99--718843498889998087----------9888988988741
Q gi|254780465|r 407 TL--ATAHPSKFPDTVKAASGI----------VPDCPISLEQMMR 439 (469)
Q Consensus 407 vL--ATAHPaKFpe~V~~Aig~----------~~~~P~~L~~l~~ 439 (469)
+| +---+..+++.+++.+-. -|+.|-.|+++.+
T Consensus 301 ilsGGNiD~~~l~~ii~r~l~~~gr~~~~~v~~~d~pG~l~~~~~ 345 (403)
T PRK08526 301 VLSGGNIDVQMLNVIIEKGLIKSYRKMKLHVTLVDKPGALMGLTD 345 (403)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 971588898899999999888559989999986889967999999
No 34
>PRK08198 threonine dehydratase; Provisional
Probab=99.51 E-value=1.3e-11 Score=100.85 Aligned_cols=292 Identities=18% Similarity=0.203 Sum_probs=185.2
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH--HHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 48825466213898120682388899999999--7317982079971665404679998616678559997357767603
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHI--LEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVV 172 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~--l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~ 172 (469)
+.+.|+=-=.+-||+|||..|+ ++.. |..+.++--|++|++|+.|.|.+.|.+ .-++++.|.-|++ ++.
T Consensus 38 g~~v~lK~EnlQ~tGSFK~RGA------~n~i~~L~~e~~~~GVVaaSaGNHaqgvA~aa~-~~gi~a~IvmP~~--ap~ 108 (406)
T PRK08198 38 GAEVYLKCENLQRTGSFKIRGA------YNKIASLSEEERARGVVAASAGNHAQGVAYAAS-LLGIKATIVMPET--APL 108 (406)
T ss_pred CCEEEEEECCCCCCCCCHHHHH------HHHHHHCCHHHHCCCEEEECCCHHHHHHHHHHH-HCCCCEEEEECCC--CCH
T ss_conf 9979998502798787468999------999983797660685799778769999999999-8199889993677--889
Q ss_pred HHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 321311344787089971796588899999975015431358311345565-4440110558999998744778873899
Q gi|254780465|r 173 QQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSPNRNISFS 251 (469)
Q Consensus 173 Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~~~~i~f~ 251 (469)
++.+.+-..|-+ ++-...+||++....+++-.+ .++.-++.-| +--+.+|-..-..-.-|+.+ .-.++
T Consensus 109 ~Ki~~~r~~GA~--Vil~G~~~~ea~~~A~~~a~e------~g~~~ihpfdd~~viaGqGTiglEileq~p~---~D~vv 177 (406)
T PRK08198 109 SKVQATKSYGAE--VVLHGDVYDEALAAALELAEE------TGATFVHPFDDPDVIAGQGTIGLEILEDLPD---VDTVV 177 (406)
T ss_pred HHHHHHHHCCCE--EEEECCCHHHHHHHHHHHHHH------CCCEEECCCCCHHHHCCHHHHHHHHHHHCCC---CCEEE
T ss_conf 999999847988--999699868999999999974------3867538989954660101499999986777---78788
Q ss_pred EECCCHHHHHH-HHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 63465788788-667775089877058-7236763356775322201023455656420013401378899987097089
Q gi|254780465|r 252 VPTGNFGDIFA-GYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSL 329 (469)
Q Consensus 252 VPtGNfGni~A-g~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~ 329 (469)
||.|.-|-+.+ +.++|.+.=.| |+| |-...-+.+++-+..|.-...+...|++-..-+..|.. +-|.
T Consensus 178 vpvGGGGLiaGia~a~K~~~P~i-kViGVEpe~a~~~~~Sl~ag~~v~~~~~~tiADGiav~~~G~---~tf~------- 246 (406)
T PRK08198 178 VPIGGGGLISGVATAVKALRPNV-RVIGVQAEGAPAMPLSLAAGRPVELESVDTIADGIAVKRPGD---LTFP------- 246 (406)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCHHHHHHHHCCCCEECCCCCEEECCCCCCCCCH---HHHH-------
T ss_conf 63786268899999999868997-089996578768999998499565599997971144687778---8999-------
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC-CCCCEEE-
Q ss_conf 99999875202651055202211000121342138899999999999863959838339999999998747-9983999-
Q gi|254780465|r 330 LVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS-SSTPMVT- 407 (469)
Q Consensus 330 ~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~-~~~p~Vv- 407 (469)
+. ++.-+ .--.|+|+|+..+|+.+|++.+.+++|-.|+|++|..+.+.. .+.++++
T Consensus 247 ----i~----------------~~~vD--~vv~V~e~eI~~A~~~l~e~~k~vvEpaGA~~lAAll~~~~~~~gk~Vv~i 304 (406)
T PRK08198 247 ----II----------------RELVD--DVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKVKVRGKKVVAV 304 (406)
T ss_pred ----HH----------------HHCCC--CEEEECHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf ----99----------------96299--789989999999999999974917742899999999847733479849999
Q ss_pred E--ECCCCCCCHHHHHHHHCC----------CCCCCHHHHHHHC
Q ss_conf 9--718843498889998087----------9888988988741
Q gi|254780465|r 408 L--ATAHPSKFPDTVKAASGI----------VPDCPISLEQMMR 439 (469)
Q Consensus 408 L--ATAHPaKFpe~V~~Aig~----------~~~~P~~L~~l~~ 439 (469)
| +---+......+++++-. -|+.|-.|..+.+
T Consensus 305 lsGGNiD~~~l~~i~er~l~~~gr~~~~~v~i~d~PG~l~~~~~ 348 (406)
T PRK08198 305 LSGGNIDVLLLSRVIERGLVAAGRYLKLRVELPDRPGQLAKLLS 348 (406)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 72578798999999999877659979999982789967999999
No 35
>PRK06382 threonine dehydratase; Provisional
Probab=99.51 E-value=1.1e-11 Score=101.43 Aligned_cols=291 Identities=17% Similarity=0.203 Sum_probs=186.4
Q ss_pred CCCEEEEECCCCCCCCCCCHHHHHHHHHHHH--HHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH
Q ss_conf 8825466213898120682388899999999--73179820799716654046799986166785599973577676033
Q gi|254780465|r 96 ANEFLLELFHGPTLSFKDIAMQFIAELMDHI--LEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQ 173 (469)
Q Consensus 96 ~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~--l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q 173 (469)
.+.|+=-=.+-||+|||..|+- +.. |..+.++.-|++|++|+.|.|.+.|.+ .-++++.|.-|++ ++.+
T Consensus 34 ~~v~lK~EnlQ~tGSFK~RGA~------n~i~~L~~e~~~~GVVaaSaGNHaqgvA~aa~-~lgi~a~IvmP~~--tp~~ 104 (400)
T PRK06382 34 GDIYFKLENFQKTGSFKSRGAV------FKFSKLSEDELRNGVITASAGNHAQGVAYAAS-INGIDAKIVMPEY--TIPQ 104 (400)
T ss_pred CEEEEEECCCCCCCCCHHHHHH------HHHHHCCHHHHCCCEEEECCCCHHHHHHHHHH-HHCCCEEEEECCC--CCHH
T ss_conf 9599986148876865698899------99985787776287799589946999999999-8399889991788--9999
Q ss_pred HCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 21311344787089971796588899999975015431358311345565-44401105589999987447788738996
Q gi|254780465|r 174 QKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSPNRNISFSV 252 (469)
Q Consensus 174 ~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~~~~i~f~V 252 (469)
+.+.+-..|- .++-..++||+|....+++-.++. .+-++.-| +.-|.+|-.--..-.-|+.+ .-.+.|
T Consensus 105 Kv~~~r~~GA--~Vil~g~~~dea~~~A~~~a~e~g------~~~Ihpfdd~~vIaGqGTiglEIleq~pd---~D~vvv 173 (400)
T PRK06382 105 KVNAVEAYGA--HVILTGRDYDEAHRYADKIAMDEN------RTFIEAFNDRWVISGQGTIGLEIMEDLPD---LDQIIV 173 (400)
T ss_pred HHHHHHHCCC--EEEEECCCCHHHHHHHHHHHHHHC------CEECCCCCCHHHHHCCHHHHHHHHHHCCC---CCEEEE
T ss_conf 9999985597--899977764699999999999839------76258889846870730599999986689---998999
Q ss_pred ECCCHHHHHH-HHHHHHCCCCCCEEEE-ECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHH
Q ss_conf 3465788788-6677750898770587-2367633567753222010234556564200134013788999870970899
Q gi|254780465|r 253 PTGNFGDIFA-GYMAKMMGLPIEKLII-ATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLL 330 (469)
Q Consensus 253 PtGNfGni~A-g~~Ak~MGLPI~kli~-AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~ 330 (469)
|.|.-|-+.+ +.++|.+.=.+ |+|. -.-.-+.+++-+..|.....+...|++-..-+..|..+- |
T Consensus 174 pvGGGGLisGia~a~K~~~P~i-kViGVEpe~a~~~~~sl~~g~~v~~~~~~tiaDGiav~~~G~~t---f--------- 240 (400)
T PRK06382 174 PVGGGGLISGIALAAKHINPNV-KIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLT---F--------- 240 (400)
T ss_pred ECCCCHHHHHHHHHHHHHCCCC-EEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCC---H---------
T ss_conf 3687158899999999859997-59997968987899998779962058877364240356555115---9---------
Q ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC-CCCCEEEE-
Q ss_conf 9999875202651055202211000121342138899999999999863959838339999999998747-99839999-
Q gi|254780465|r 331 VKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS-SSTPMVTL- 408 (469)
Q Consensus 331 v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~-~~~p~VvL- 408 (469)
+..++.-+. --.|+|+|+..+|+.+|++.+.+++|-.|+|++|+.+.+.. .+..++++
T Consensus 241 ------------------~i~~~~vD~--vv~V~e~eI~~A~~~l~e~~k~vvEpaGA~~lAAll~~~~~~~gk~Vv~vl 300 (400)
T PRK06382 241 ------------------DIAKNYVDD--IVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKVDVKGKKVAIVV 300 (400)
T ss_pred ------------------HHHHHCCCC--EEEECHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHCCHHHCCCEEEEEE
T ss_conf ------------------999840897--799899999999999999639588267999999998490653798499996
Q ss_pred --ECCCCCCCHHHHHHHHCC----------CCCCCHHHHHHHC
Q ss_conf --718843498889998087----------9888988988741
Q gi|254780465|r 409 --ATAHPSKFPDTVKAASGI----------VPDCPISLEQMMR 439 (469)
Q Consensus 409 --ATAHPaKFpe~V~~Aig~----------~~~~P~~L~~l~~ 439 (469)
+---+.-+...+++.+-. -|+.|-.|.++.+
T Consensus 301 sGGNiD~~~l~~ii~r~l~~~gr~~~~~v~i~d~pG~L~~~~~ 343 (400)
T PRK06382 301 SGGNINPLLMSKIIYKELENLGQLVRIECNIPDRPGNLYRIAN 343 (400)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 3788797899999999888639979999986889977999999
No 36
>PRK08813 threonine dehydratase; Provisional
Probab=99.50 E-value=3.5e-11 Score=97.90 Aligned_cols=274 Identities=13% Similarity=0.112 Sum_probs=175.4
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 2546621389812068238889999999973--17982079971665404679998616678559997357767603321
Q gi|254780465|r 98 EFLLELFHGPTLSFKDIAMQFIAELMDHILE--ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK 175 (469)
Q Consensus 98 ~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~--~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~ 175 (469)
.|+=-=.+-||+|||-.|+ ++..+. .+++.--|++|+||+-|.|.+.|.+ .-++.+.|+-|++ .++....
T Consensus 50 V~lK~EnlQ~TGSFK~RGA------~n~ll~l~~~~~~~GVV~aSaGNHaqavA~aA~-~~gi~a~IvmP~~-ap~~Ki~ 121 (349)
T PRK08813 50 VWLKLENLQRTGSYKVRGA------LNALLAGLERGDERPVICASAGNHAQGVAWSAY-RLGVQAITVMPHG-APQTKIA 121 (349)
T ss_pred EEEEEHHCCCCCCCHHHHH------HHHHHHCCHHHCCCCEEEECCCHHHHHHHHHHH-HCCCCEEEEECCC-CCHHHHH
T ss_conf 7986410888788458889------999985586550786799886489999999999-8699989996899-9899999
Q ss_pred CCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 311344787089971796588899999975015431358311345565-4440110558999998744778873899634
Q gi|254780465|r 176 QMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSPNRNISFSVPT 254 (469)
Q Consensus 176 qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPt 254 (469)
.|... | ..++....+||+++..++++-.. ..+.-+.+-| +--|.+|-..... +..+. +-.+.||.
T Consensus 122 ~~r~~-G--A~Vi~~g~~~~ea~~~A~~~a~e------~g~~~VhP~dd~~VIaGqGTiglE----i~~q~-PD~vvvpv 187 (349)
T PRK08813 122 GVAHW-G--ATVRQHGNSYDEAFAFARELADQ------NGYRFLSAFDDPDVIAGQGTVGIE----LAAHA-PDVVIVPI 187 (349)
T ss_pred HHHHC-C--CEEEEECCCHHHHHHHHHHHHHH------CCCEECCCCCCHHHHCCCHHHHHH----HHHCC-CCEEEECC
T ss_conf 99972-9--86999599779999999999997------299736999998896346788999----98569-99898778
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 6578878866777508987705872-367633567753222010234556564200134013788999870970899999
Q gi|254780465|r 255 GNFGDIFAGYMAKMMGLPIEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKE 333 (469)
Q Consensus 255 GNfGni~Ag~~Ak~MGLPI~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~ 333 (469)
|.-|-+.+.-+|-+ -|=-++|.+ ..-.+.+++.+. |.........|++-.+-+..|.. +-|.+.
T Consensus 188 GGGGL~sGia~a~k--~~~~~ViGvepe~a~~~~~Sl~-g~~~~~~~~~TiADGla~~~pg~---~tf~i~--------- 252 (349)
T PRK08813 188 GGGGLASGVALALK--SQGVRVVGAQVEGVDSMARAVR-GDLREIAPVATLADGVKVKIPGF---LTRRLC--------- 252 (349)
T ss_pred CCCHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHC-CCCCCCCCCCCEEECCCCCCCCH---HHHHHH---------
T ss_conf 86069999999982--8997577743147288999963-99820588675541313588758---999999---------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEE--ECC
Q ss_conf 987520265105520221100012134213889999999999986395983833999999999874799839999--718
Q gi|254780465|r 334 AFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTL--ATA 411 (469)
Q Consensus 334 ~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~~~~p~VvL--ATA 411 (469)
++.-+ .-..|+|+|+..+|+.+|++.+.++.|-.|++++|.+++ .+....++| +--
T Consensus 253 ------------------~~~vD--~iv~VsE~eI~~Am~~L~~~~klvvEpAgA~~lAA~~~~--~Gk~V~vilsGGNi 310 (349)
T PRK08813 253 ------------------SSLLD--DVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV--SGKRKCAVVSGGNI 310 (349)
T ss_pred ------------------HHHCC--CEEEECHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHC--CCCCEEEEECCCCC
T ss_conf ------------------98399--889989999999999999966968750889999758772--99948999698770
Q ss_pred CCCCCHHHHHHHHCCCCCC
Q ss_conf 8434988899980879888
Q gi|254780465|r 412 HPSKFPDTVKAASGIVPDC 430 (469)
Q Consensus 412 HPaKFpe~V~~Aig~~~~~ 430 (469)
.|.-|...++++.-....+
T Consensus 311 D~~~l~~il~~~~~~~gr~ 329 (349)
T PRK08813 311 DATVLATLLSEVRPRPPRK 329 (349)
T ss_pred CHHHHHHHHHHHHHCCCCH
T ss_conf 9899999986010114514
No 37
>PRK07334 threonine dehydratase; Provisional
Probab=99.47 E-value=1.1e-10 Score=94.40 Aligned_cols=291 Identities=16% Similarity=0.124 Sum_probs=173.5
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH
Q ss_conf 48825466213898120682388899999999731798207997166540467999861667855999735776760332
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ 174 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~ 174 (469)
+.+.|+=-=.+-||+|||..|.--. + ..|..+.++.-|++||+|+.|.|.+.+.+ .-++++.|.-|++ . +.++
T Consensus 34 g~~v~lK~E~lQ~tGSFK~RGA~n~---i-~~L~~e~~~~GVVaaSaGNHaqgvA~aa~-~lgi~a~IvmP~~-~-p~~K 106 (399)
T PRK07334 34 GAEIWLKFENLQFTASFKERGALNK---L-LLLSEEERARGVIAMSAGNHAQGVAYHAQ-RLGIPATIVMPRF-T-PTVK 106 (399)
T ss_pred CCEEEEEECCCCCCCCCHHHHHHHH---H-HHCCHHHHCCCEEEECCCHHHHHHHHHHH-HHCCCEEEEECCC-C-CHHH
T ss_conf 9979998514897677088899999---9-84797775586799888669999999999-8199879997687-8-4999
Q ss_pred CCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCCCCCE-EEEE
Q ss_conf 1311344787089971796588899999975015431358311345565-4440110558999998744778873-8996
Q gi|254780465|r 175 KQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSPNRNI-SFSV 252 (469)
Q Consensus 175 ~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~~~~i-~f~V 252 (469)
.+.+-..|-+ ++-...+||+|....+++-.++ ++.-++.-| +.-+.+|-..- +++.+....+ .++|
T Consensus 107 i~~~r~~GA~--Vil~g~~~~~a~~~A~~~a~~~------g~~~ihpfdd~~viaGqgTig----lEileq~p~~D~vvv 174 (399)
T PRK07334 107 VERTRGFGAE--VVLEGDTFDEARAHARELAEEE------GLTFVHPYDDPAVIAGQGTVA----LEMLEDAPDLDTLVV 174 (399)
T ss_pred HHHHHHCCCE--EEEECCCCHHHHHHHHHHHHHC------CCEECCCCCCHHHHHHHHHHH----HHHHHHCCCCCEEEE
T ss_conf 9999856977--9997898169999999999853------988548889866776567899----999985789998999
Q ss_pred ECCCHHHHHHHHHHHHCCCCCCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 346578878866777508987705872-3676335677532220102345565642001340137889998709708999
Q gi|254780465|r 253 PTGNFGDIFAGYMAKMMGLPIEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLV 331 (469)
Q Consensus 253 PtGNfGni~Ag~~Ak~MGLPI~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v 331 (469)
|.|.-|-+..--.|-|.--|=-|+|.. ...-+.+++-++.+.-.. ...|++-..-+..+..
T Consensus 175 pvGGGGLisGia~a~K~~~P~ikViGVEpe~a~~m~~sl~~~~~~~--~~~TiADGlav~~~G~---------------- 236 (399)
T PRK07334 175 PIGGGGLISGIATAAKALKPDIEIIGVQTELYPSMYAALKGVALPC--GGSTIAEGIAVKSPGQ---------------- 236 (399)
T ss_pred ECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCCCCC--CCCCCCCCCCCCCCCH----------------
T ss_conf 2786047999999996049997899976587769999846999889--9873201224688877----------------
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC--CCCCEEEE
Q ss_conf 999875202651055202211000121-342138899999999999863959838339999999998747--99839999
Q gi|254780465|r 332 KEAFYSLENKKYFRIDSEHLQKMSLSF-SAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS--SSTPMVTL 408 (469)
Q Consensus 332 ~~~m~~l~~~g~~~i~~~~l~~l~~~f-~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~--~~~p~VvL 408 (469)
..++-+++.. .--.|+|+|+..+|+.+|++.+.+++|-.|++++|..+.... +....++|
T Consensus 237 -----------------~tf~i~~~~vD~vv~Vse~eI~~Am~~l~e~~k~vvEpaGA~~lAAll~~~~~~~gk~Vv~vl 299 (399)
T PRK07334 237 -----------------LTLAIVRRLVDDILLVDEADIEQAIALLLEIEKTVVEGAGAAGLAALLAHPERFRGRKVGLVL 299 (399)
T ss_pred -----------------HHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHCCCEEEEEE
T ss_conf -----------------789999962897799899999999999999659865771799999997381664698199996
Q ss_pred --ECCCCCCCHHHHHHHHCC----------CCCCCHHHHHHHC
Q ss_conf --718843498889998087----------9888988988741
Q gi|254780465|r 409 --ATAHPSKFPDTVKAASGI----------VPDCPISLEQMMR 439 (469)
Q Consensus 409 --ATAHPaKFpe~V~~Aig~----------~~~~P~~L~~l~~ 439 (469)
+---|.-++..+++++-. -|+.|-.|.++.+
T Consensus 300 sGGNiD~~~l~~ii~r~l~~~gr~~~~~v~ipd~PG~l~~~~~ 342 (399)
T PRK07334 300 CGGNIDTRLLANVLLRGLVRAGRLARLRVDIRDRPGALAKVTA 342 (399)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH
T ss_conf 8688698899999999888559989999988889967999999
No 38
>PRK09224 threonine dehydratase; Reviewed
Probab=99.41 E-value=1.3e-10 Score=94.03 Aligned_cols=298 Identities=17% Similarity=0.193 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHH--HHCCCCCEEEEECC
Q ss_conf 9999999998630476678604772-------48825466213898120682388899999999--73179820799716
Q gi|254780465|r 70 SKLRDIVNRSYHCFRNAAVTPLIQL-------NANEFLLELFHGPTLSFKDIAMQFIAELMDHI--LEERDHYITIVGAT 140 (469)
Q Consensus 70 ~~l~~ii~~ay~~f~~~~~~pl~~l-------~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~--l~~~~~~~~il~AT 140 (469)
+-|+.|+.. ..++--..+||..- +.+.|+=-=..-||+|||-.|. ++.. |..+.+..-|+||+
T Consensus 4 ~y~~~il~a--~vydva~~TPL~~s~~LS~~~g~~V~lK~EdlQ~tgSFK~RGA------~N~i~~L~~e~~~~GVV~aS 75 (504)
T PRK09224 4 DYLRKILTA--RVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGA------YNKMAQLTEEQLARGVITAS 75 (504)
T ss_pred HHHHHHHCC--CCCEEEECCCCCCHHHHHHHHCCEEEEEEHHCCCCCCCHHHHH------HHHHHHCCHHHHCCCEEEEC
T ss_conf 789999739--7712111786646178879879989998220787687558889------99997089888649789989
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCC
Q ss_conf 65404679998616678559997357767603321311344787089971796588899999975015431358311345
Q gi|254780465|r 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGIN 220 (469)
Q Consensus 141 SGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~N 220 (469)
+|+.|.|.+.|.+ .-+++..|.-|.. ++.++.+.+-..|.+| +-...+||+|+...+++-.. ..++-+.
T Consensus 76 aGNHAqgvA~AA~-~lgi~atIvMP~t--tP~~Kv~~vr~~GaeV--vl~G~~~dea~~~A~~la~e------~g~~fIh 144 (504)
T PRK09224 76 AGNHAQGVALSAA-RLGIKAVIVMPVT--TPDIKVDAVRALGGEV--VLHGDSFDEAYAHAIELAEE------EGLTFIH 144 (504)
T ss_pred CCHHHHHHHHHHH-HCCCCEEEEECCC--CCHHHHHHHHHCCCEE--EEECCCHHHHHHHHHHHHHH------CCCEEEC
T ss_conf 7679999999999-8699889997899--9799999999649979--99599989999999999986------4978506
Q ss_pred CCC-HHHCCCCHHHHHHHHHHHCCCCCCE-EEEEECCCHHHHHH-HHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHH
Q ss_conf 565-4440110558999998744778873-89963465788788-667775089877058-7236763356775322201
Q gi|254780465|r 221 SIN-WARIMAQIVYYFVSSIALGSPNRNI-SFSVPTGNFGDIFA-GYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYR 296 (469)
Q Consensus 221 SIN-~~Ril~Q~vyYf~a~~~~~~~~~~i-~f~VPtGNfGni~A-g~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~ 296 (469)
.-| +--|.+|-.--..-.-|+. .++ .+.||.|.-|-+.+ +.+.|...--| |+| |-.-.-+.+++-+..|.-.
T Consensus 145 PfDdp~VIaGQGTiglEIleQ~~---~~~D~V~vpVGGGGLiaGia~~~K~~~P~i-kVIGVEpe~a~~m~~Sl~aG~~v 220 (504)
T PRK09224 145 PFDDPDVIAGQGTIAMEILQQHP---HPLDAIFVPVGGGGLIAGVAAYIKQLRPEI-KVIGVEPEDSACLKAALEAGERV 220 (504)
T ss_pred CCCCHHHHHCCCHHHHHHHHHCC---CCCCEEEEECCCCHHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHCCCEE
T ss_conf 77888686267559999998576---888889995584378899999998639987-38999956875799999769756
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC-CCCCCHHHHHHHHHHH
Q ss_conf 023455656420013401378899987097089999998752026510552022110001213-4213889999999999
Q gi|254780465|r 297 PEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFS-AKRASMEDVNSVIKSV 375 (469)
Q Consensus 297 ~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~-s~svsDeet~~~Ik~~ 375 (469)
.-+.+.|.+--.-+.. +....++-+++..+ --.|+++|+..+||.+
T Consensus 221 ~l~~v~~fADG~AV~~---------------------------------vG~~tF~i~k~~VDdvv~V~~deIcaAikdi 267 (504)
T PRK09224 221 ELPQVGLFADGVAVKR---------------------------------IGEETFRLCQEYVDDVITVDTDEICAAIKDV 267 (504)
T ss_pred ECCCCCCCCCCCCCCC---------------------------------CCHHHHHHHHHCCCCEEEECHHHHHHHHHHH
T ss_conf 5476674357620066---------------------------------7678998875248962798878999999999
Q ss_pred HHHCCCEECCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCCH---HHHHHH
Q ss_conf 9863959838339999999998747---99839999718843498---889998
Q gi|254780465|r 376 LEKSNYLVDPHTAVGIHAALACRKS---SSTPMVTLATAHPSKFP---DTVKAA 423 (469)
Q Consensus 376 y~~~gyiiDPHTAvG~~aa~~~~~~---~~~p~VvLATAHPaKFp---e~V~~A 423 (469)
|+++..+++|-.|++++++++|... .+...|+..+.----|- .+.+.|
T Consensus 268 ~e~~r~I~EPaGAlalAglk~y~~~~~~~~~~~v~i~sGaN~nF~rLr~v~era 321 (504)
T PRK09224 268 FEDTRSIAEPAGALALAGLKKYVAQHGIKGETLVAILSGANMNFDRLRYVAERA 321 (504)
T ss_pred HHHCCEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 983676534618999999999997557664627997236766712447889886
No 39
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=99.40 E-value=6.1e-10 Score=89.31 Aligned_cols=278 Identities=17% Similarity=0.186 Sum_probs=187.5
Q ss_pred CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 82546621389812068238889999999973-17982079971665404679998616678559997357767603321
Q gi|254780465|r 97 NEFLLELFHGPTLSFKDIAMQFIAELMDHILE-ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK 175 (469)
Q Consensus 97 ~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~-~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~ 175 (469)
..|+=-=.+=||+|||=.|.-.. +.. |. ...++.-|+|||+|+-|.+.+.+.+ +-+++..|.-|++ ++.|+.
T Consensus 41 ~v~lK~E~lQ~~gSFK~RGA~n~---i~~-Ls~e~~~~~gViaaSaGNHaQGvA~aa~-~lGi~a~IvMP~~--tp~~Kv 113 (347)
T COG1171 41 EIYLKRENLQPVGSFKIRGAYNK---LSS-LSEEEERAAGVIAASAGNHAQGVAYAAK-RLGIKATIVMPET--TPKIKV 113 (347)
T ss_pred EEEEEECCCCCCCCCHHHHHHHH---HHH-CCHHHHHCCCEEEECCCCHHHHHHHHHH-HHCCCEEEEECCC--CCHHHH
T ss_conf 58986212753064214458899---875-6854510475699658737999999999-8099879995699--829999
Q ss_pred CCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCC-CHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 31134478708997179658889999997501543135831134556-54440110558999998744778873899634
Q gi|254780465|r 176 QMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSI-NWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254 (469)
Q Consensus 176 qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSI-N~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPt 254 (469)
+-+-..|. .++-...+||||....+++-..+. ++-+-.- ++-=+-+|-..-....-|+... +-.+.||.
T Consensus 114 ~a~r~~Ga--eVil~g~~~dda~~~a~~~a~~~G------~~~i~pfD~p~viAGQGTi~lEileq~~~~--~d~v~vpv 183 (347)
T COG1171 114 DATRGYGA--EVILHGDNFDDAYAAAEELAEEEG------LTFVPPFDDPDVIAGQGTIALEILEQLPDL--PDAVFVPV 183 (347)
T ss_pred HHHHHCCC--EEEEECCCHHHHHHHHHHHHHHCC------CEEECCCCCCCEEECCCHHHHHHHHHCCCC--CCEEEEEC
T ss_conf 99985698--899979977999999999999739------788589999452534258999999846456--89899953
Q ss_pred CCHHHHHHH-HHHHHCCCCCCEEEEECCCCCHHHHHHHCC-CHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 657887886-677750898770587236763356775322-201023455656420013401378899987097089999
Q gi|254780465|r 255 GNFGDIFAG-YMAKMMGLPIEKLIIATNENDTLVRMFDMG-MYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVK 332 (469)
Q Consensus 255 GNfGni~Ag-~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG-~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~ 332 (469)
|--|-|.+- .+.|.+...++=+-|-...-+.+++-+..| .....+...|++-.+.+..+++.- |.+
T Consensus 184 GGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~t---f~i--------- 251 (347)
T COG1171 184 GGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLT---FEI--------- 251 (347)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHH---HHH---------
T ss_conf 86479999999999839997299981488858999997599435369878002542048887778---999---------
Q ss_pred HHHHHHCCCCCCCCCCHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC-C-CC-CEEEE
Q ss_conf 99875202651055202211000121-342138899999999999863959838339999999998747-9-98-39999
Q gi|254780465|r 333 EAFYSLENKKYFRIDSEHLQKMSLSF-SAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS-S-ST-PMVTL 408 (469)
Q Consensus 333 ~~m~~l~~~g~~~i~~~~l~~l~~~f-~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~-~-~~-p~VvL 408 (469)
+++.. ..-.|+|+|+..+|+.+|++...+..|-.|++++++.++..+ . +. -.+++
T Consensus 252 ---------------------~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~~~g~~v~~il 310 (347)
T COG1171 252 ---------------------LRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEPLQGKTVVVIL 310 (347)
T ss_pred ---------------------HHHCCCCEEEECHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf ---------------------99709968998889999999999732771136607999999996002113797599996
Q ss_pred --ECCCCCCCHHHHHHHH
Q ss_conf --7188434988899980
Q gi|254780465|r 409 --ATAHPSKFPDTVKAAS 424 (469)
Q Consensus 409 --ATAHPaKFpe~V~~Ai 424 (469)
+---+..+.++.+.+.
T Consensus 311 SGgN~d~~~~~~v~~~~~ 328 (347)
T COG1171 311 SGGNIDFERLAEVLERAL 328 (347)
T ss_pred CCCCCCHHHHHHHHHCCC
T ss_conf 078879899999984051
No 40
>PRK12483 threonine dehydratase; Reviewed
Probab=99.39 E-value=3.4e-10 Score=91.04 Aligned_cols=298 Identities=15% Similarity=0.166 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEE-------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEECCC
Q ss_conf 99999999863047667860477-------2488254662138981206823888999999997--31798207997166
Q gi|254780465|r 71 KLRDIVNRSYHCFRNAAVTPLIQ-------LNANEFLLELFHGPTLSFKDIAMQFIAELMDHIL--EERDHYITIVGATS 141 (469)
Q Consensus 71 ~l~~ii~~ay~~f~~~~~~pl~~-------l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l--~~~~~~~~il~ATS 141 (469)
-|+.|+.. ..++--..+||.. ++.+.|+=-=..-||+|||-.|. ++..+ ..+.+..-|+||++
T Consensus 22 y~~~il~a--~VYdva~~TPL~~~~~LS~~~g~~I~LKrEdlQ~t~SFK~RGA------~N~i~~Ls~e~~~rGVVaaSa 93 (521)
T PRK12483 22 YLRKILAA--RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGA------YNKMARLPAEQLARGVITASA 93 (521)
T ss_pred HHHHHHCC--CCCEEECCCCCCCHHHHHHHHCCEEEEEECCCCCCCCCCHHHH------HHHHHHCCHHHHCCCEEEECC
T ss_conf 99999649--8723303777754478989869979998504877667646379------999872999898097799887
Q ss_pred CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCC
Q ss_conf 54046799986166785599973577676033213113447870899717965888999999750154313583113455
Q gi|254780465|r 142 GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINS 221 (469)
Q Consensus 142 GDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NS 221 (469)
|+-|.+.+.|.+ .-+++..|+-|.+ ++.++.+-+-..|. .++-...+||+|....+++-.. ..++-+..
T Consensus 94 GNHAqgvA~AA~-~lgi~a~IvMP~~--tp~~Kv~~vr~~GA--eVvl~G~~~dea~~~A~~la~e------~g~~~IhP 162 (521)
T PRK12483 94 GNHAQGVALAAA-RLGVKAVIVMPRT--TPELKVDGVRARGG--EVVLHGESFPDALAHALKLAEE------EGLTFVPP 162 (521)
T ss_pred CHHHHHHHHHHH-HCCCCEEEEECCC--CCHHHHHHHHHCCC--EEEEECCCHHHHHHHHHHHHHH------CCCEEECC
T ss_conf 679999999999-7699989993699--96999999997699--9999799869999999999997------49886076
Q ss_pred CC-HHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH-HHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCC
Q ss_conf 65-444011055899999874477887389963465788788-667775089877058-723676335677532220102
Q gi|254780465|r 222 IN-WARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFA-GYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPE 298 (469)
Q Consensus 222 IN-~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~A-g~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~ 298 (469)
-| +-=|.+|-..-..-.-|+. ++.-.+.||.|.-|-|.+ +.+.|.+.=-| |+| |-.-.-+.+++-+..|.-..-
T Consensus 163 fDDp~VIaGQGTiglEIleq~p--~~lD~V~vpVGGGGLiaGia~~~K~~~P~i-kVIGVEpe~a~~m~~Sl~aG~~v~L 239 (521)
T PRK12483 163 FDDPDVIAGQGTVAMEILRQHP--GPLDAIFVPVGGGGLIAGIAAYVKYLRPEI-KVIGVEPDDSNCLQAALAAGERVVL 239 (521)
T ss_pred CCCHHHHHCCCHHHHHHHHHCC--CCCCEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHHCCEEEC
T ss_conf 6898772144069999998678--998889976787417889999998619997-0899996787689999983983676
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCC-CCCCCHHHHHHHHHHHHH
Q ss_conf 3455656420013401378899987097089999998752026510552022110001213-421388999999999998
Q gi|254780465|r 299 IVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFS-AKRASMEDVNSVIKSVLE 377 (469)
Q Consensus 299 ~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~-s~svsDeet~~~Ik~~y~ 377 (469)
+.+.|++--+-+..+ ....+.-+++..+ --.|+++|+..+||.+|+
T Consensus 240 ~~v~tfaDG~AV~~v---------------------------------G~~tF~i~k~~VDdvv~Vs~deIcaAIkdife 286 (521)
T PRK12483 240 GQVGLFADGVAVAQI---------------------------------GEHTFELCRHYVDEVVTVSTDELCAAIKDIYD 286 (521)
T ss_pred CCCCCCCCCCCCCCC---------------------------------CHHHHHHHHHCCCCEEEECHHHHHHHHHHHHH
T ss_conf 888852676455778---------------------------------98899999861995799891799999999998
Q ss_pred HCCCEECCCHHHHHHHHHHHHHC---CCCCEEEEECCCCCCC---HHHHHHH
Q ss_conf 63959838339999999998747---9983999971884349---8889998
Q gi|254780465|r 378 KSNYLVDPHTAVGIHAALACRKS---SSTPMVTLATAHPSKF---PDTVKAA 423 (469)
Q Consensus 378 ~~gyiiDPHTAvG~~aa~~~~~~---~~~p~VvLATAHPaKF---pe~V~~A 423 (469)
++..|++|-.|++++++++|-.. .+..+|+..+.-=--| +.+.+.|
T Consensus 287 ~tr~I~EPAGAlalAglk~y~~~~~~~gk~~v~i~sGaN~nF~rLr~v~era 338 (521)
T PRK12483 287 DTRSITEPAGALAVAGIKKYVEREGIEGQTLVAIDSGANVNFDRLRHVAERA 338 (521)
T ss_pred HCCEEECCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 2666634705667999999998548876737999504666754213557765
No 41
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=99.34 E-value=3.7e-09 Score=83.85 Aligned_cols=275 Identities=17% Similarity=0.143 Sum_probs=176.3
Q ss_pred HHCCCCCCCEEEECC---CCCEEEEEC------CCCCCCCCCCHHHH-HHHHHHHHH-----------------HCCCCC
Q ss_conf 304766786047724---882546621------38981206823888-999999997-----------------317982
Q gi|254780465|r 81 HCFRNAAVTPLIQLN---ANEFLLELF------HGPTLSFKDIAMQF-IAELMDHIL-----------------EERDHY 133 (469)
Q Consensus 81 ~~f~~~~~~pl~~l~---~~~~vlELf------HGPT~aFKD~a~q~-l~~~~~~~l-----------------~~~~~~ 133 (469)
..++.=.++||..+. +.+-|-++| .=|+.|||-+|... +.+++...+ ++.-+.
T Consensus 17 ~~~p~Y~pTPL~~l~~La~~lGv~~v~vKdEs~R~glgSFK~lGa~yAv~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (379)
T PRK08206 17 QSWPGYAPTPLVALPDLAARLGVASILVKDESYRFGLNSFKALGGAYAVARLLAEKLGLDISELSFEELKSGEVRAKLAD 96 (379)
T ss_pred HCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 43888889877464899998499818997278768877857738899999999998556655588677530777764158
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCC
Q ss_conf 07997166540467999861667855999735776760332131134478708997179658889999997501543135
Q gi|254780465|r 134 ITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHS 213 (469)
Q Consensus 134 ~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~ 213 (469)
++++|||.|+-|.|.+.+.+ .-++++.|+-|++ +++....+|.... ..++-++|+|||+-...++.... +.
T Consensus 97 ~tvv~AS~GNHg~aVA~~A~-~~G~~a~I~mp~~-~~~~k~~~i~~~G---AeVi~~~~~yd~a~~~A~~~A~~----~g 167 (379)
T PRK08206 97 ITFATATDGNHGRGVAWAAQ-QLGQKAVIYMPKG-SSEERVEAIRALG---AECIRTDGNYDDSVRLAAQEAQE----NG 167 (379)
T ss_pred CEEEEECCCCHHHHHHHHHH-HCCCCEEEEECCC-CCHHHHHHHHHCC---CEEEEECCCHHHHHHHHHHHHHH----CC
T ss_conf 27999478728999999999-8399789991799-9999999999659---98999688689999999999997----59
Q ss_pred CCCCCC------CCCCHHHCCCCHHHHHHHHHHHCCCCC-CEEEEEECCCHH--HHHHHHHHHHCCCCCCEEEEE-CCCC
Q ss_conf 831134------556544401105589999987447788-738996346578--878866777508987705872-3676
Q gi|254780465|r 214 VNLSGI------NSINWARIMAQIVYYFVSSIALGSPNR-NISFSVPTGNFG--DIFAGYMAKMMGLPIEKLIIA-TNEN 283 (469)
Q Consensus 214 ~~l~s~------NSIN~~Ril~Q~vyYf~a~~~~~~~~~-~i~f~VPtGNfG--ni~Ag~~Ak~MGLPI~kli~A-tN~N 283 (469)
..+.+= ..|..-=+.+|.+.-....-|+...+. +..+.+|.|.-| -..+++++.++|-..-++|+. -..-
T Consensus 168 ~~lV~Dts~~gY~~iP~~Vm~Gy~Ti~~Ei~eQl~~~~~~pthV~~~~GvGglaagv~~~~~~~~~~~~p~ii~VEP~~A 247 (379)
T PRK08206 168 WVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEGGEPPTHVFLQAGVGGLAAAVLGYLAEVYGEQRPHFIVVEPDQA 247 (379)
T ss_pred CEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 88973588766444769888519999999999755217888779990580369999999999974678976999677757
Q ss_pred CHHHHHHHCCCHHCC-CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCC-CCCC
Q ss_conf 335677532220102-34556564200134013788999870970899999987520265105520221100012-1342
Q gi|254780465|r 284 DTLVRMFDMGMYRPE-IVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLS-FSAK 361 (469)
Q Consensus 284 diL~rf~~tG~y~~~-~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~-f~s~ 361 (469)
+-+.+-+..|.-..- ....|+.-.|+.+-||-. - |+-++.. -..-
T Consensus 248 ~c~~~S~~~G~~v~v~~~~~TimdGL~cg~ps~~---a------------------------------w~iL~~~~d~~v 294 (379)
T PRK08206 248 DCLYQSARDGKPVAVTGDMDTIMAGLACGEPNPL---A------------------------------WEILRNCADAFI 294 (379)
T ss_pred HHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCHH---H------------------------------HHHHHHHCCEEE
T ss_conf 6999999859966716861230033456987747---8------------------------------999997599699
Q ss_pred CCCHHHHHHHHHHHHHH----CCCEECCCHHHHHHHHHHH
Q ss_conf 13889999999999986----3959838339999999998
Q gi|254780465|r 362 RASMEDVNSVIKSVLEK----SNYLVDPHTAVGIHAALAC 397 (469)
Q Consensus 362 svsDeet~~~Ik~~y~~----~gyiiDPHTAvG~~aa~~~ 397 (469)
+|+|+++...|+.+.+. .+++..|-.|+|+++++..
T Consensus 295 tVsD~~i~~Amr~La~~~~~d~~IvagpsGAaglAaL~~~ 334 (379)
T PRK08206 295 SCDDEVAALGMRILANPLGGDPPIVSGESGAVGLGLLYAL 334 (379)
T ss_pred EECHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHH
T ss_conf 9767999999999856657899746616548999999999
No 42
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=99.29 E-value=1.5e-08 Score=79.64 Aligned_cols=336 Identities=14% Similarity=0.078 Sum_probs=185.8
Q ss_pred CCCCCCCCCCCCCCCCHHHHH-----HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE-----
Q ss_conf 787863286107888988998-----7709998999999998751578998999999999863047667860477-----
Q gi|254780465|r 24 ATDGGLYIPKYIPRLSEKEIK-----DLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQ----- 93 (469)
Q Consensus 24 a~DGGL~vP~~~p~~~~~~~~-----~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~----- 93 (469)
..-||-||||.+-. ..++|. -+.+..|.+=-.+.++.|+|- +.||.+
T Consensus 16 g~fGG~~vpe~l~~-~l~el~~~~~~~~~d~~F~~e~~~~~~~y~GR----------------------PTPL~~A~~Ls 72 (403)
T PRK13028 16 GEYGGQFVPPELKP-ALDEIEAAYEEIKKDPDFINELRYLLKHYVGR----------------------PTPLYHAKRLS 72 (403)
T ss_pred CCCCCEECCHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----------------------CCHHHHHHHHH
T ss_conf 88389858598999-99999999999966999999999999864899----------------------86657777778
Q ss_pred --CC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf --24-882546621389812068238889999999973179820799716654046799986166785599973577676
Q gi|254780465|r 94 --LN-ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRIS 170 (469)
Q Consensus 94 --l~-~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS 170 (469)
++ .+.|+=-=--.||+|||+-.+-..+ +..++.+++.+|-....|-+|+|.+.+++ +-++++.|+-+...+.
T Consensus 73 ~~lgga~IylKrEdln~tGSHKiNnai~Qa----llAk~~Gk~riiaETGAGQhG~A~A~aaA-~~Gl~c~VyMg~~d~~ 147 (403)
T PRK13028 73 EKLGGAQIYLKREDLNHTGAHKINHCLGEA----LLAKRMGKKKVIAETGAGQHGVALATAAA-LFGMECEIYMGEVDIE 147 (403)
T ss_pred HHCCCCEEEEEECCCCCCCCCCHHHHHHHH----HHHHHCCCCEEEEECCCCHHHHHHHHHHH-HCCCCEEEEECCCCCC
T ss_conf 656986799985057877775233089999----99998399758740375256999999999-7699459985443200
Q ss_pred HHH--HCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHH---CCCCCCCCCCCCHHHCC---CCHHHHHHHHHHHC
Q ss_conf 033--21311344787089971796588899999975015431---35831134556544401---10558999998744
Q gi|254780465|r 171 VVQ--QKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFC---HSVNLSGINSINWARIM---AQIVYYFVSSIALG 242 (469)
Q Consensus 171 ~~Q--~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~---~~~~l~s~NSIN~~Ril---~Q~vyYf~a~~~~~ 242 (469)
..+ ..+|-.. |-. +++|.....-....|.+++.|+--. ..+-|+|+-.-++.+.| .|.|--..+..|+.
T Consensus 148 rq~~nv~~M~ll-GA~--Vi~v~~G~~tLkdAi~eAir~~~~~~~~t~Y~lGSvvgphPyp~~V~~fQsvIG~E~~~Q~~ 224 (403)
T PRK13028 148 KQHPNVFRMKIL-GAK--VVPVTRGTRTLKEAVDSAFEAYLKDPDTTHYAIGSVVGPHPFPKMVRDFQSVIGREAREQFL 224 (403)
T ss_pred HHHHHHHHHHHC-CCE--EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 037789999986-998--99806876509999999999998384652697146568872089999999999899999999
Q ss_pred -CCCC-CEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCC----------------------
Q ss_conf -7788-7389963465788788667775089877058723676335677532220102----------------------
Q gi|254780465|r 243 -SPNR-NISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPE---------------------- 298 (469)
Q Consensus 243 -~~~~-~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~---------------------- 298 (469)
..++ |-.++.|.|+-+|+.+-|..-.=--.+ +||...-.- +-+.+|.+...
T Consensus 225 e~~G~~PD~vvacVGGGSNa~G~f~pFl~d~~v-~ligvEaag----~g~~~g~~aA~l~~G~~gvlhG~~t~~lqd~~G 299 (403)
T PRK13028 225 EMTGRLPDYVVACVGGGSNAIGAFAAFLDDEDV-KLVGVEPAG----RGLDTGEHAATLTLGKPGVLHGFKSYVLQDEDG 299 (403)
T ss_pred HHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCC-EEEEECCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 864999998997788723488987764266662-089962677----677776543012589845445720001578898
Q ss_pred CCC--CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 345--565642001340137889998709708999999875202651055202211000121342138899999999999
Q gi|254780465|r 299 IVM--ETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVL 376 (469)
Q Consensus 299 ~~~--~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y 376 (469)
... .++|..+|-- +-+..++.+. ..| .....+++|+|+++.-+.+.
T Consensus 300 q~~~~hSisaGLdYp--------------gvgPe~s~L~----~~g--------------r~~~~avtD~Eal~A~~~la 347 (403)
T PRK13028 300 EPAPVHSIASGLDYP--------------GVGPEHAYLK----DSG--------------RVEYVSATDEEALDAFFTLS 347 (403)
T ss_pred CCCCCEEECCCCCCC--------------CCCHHHHHHH----HCC--------------CEEEEECCHHHHHHHHHHHH
T ss_conf 837642102234678--------------8588999998----579--------------64999669899999999999
Q ss_pred HHCCCEECCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCHHHHHHHHCCC
Q ss_conf 86395983833999999999874--7998399997188434988899980879
Q gi|254780465|r 377 EKSNYLVDPHTAVGIHAALACRK--SSSTPMVTLATAHPSKFPDTVKAASGIV 427 (469)
Q Consensus 377 ~~~gyiiDPHTAvG~~aa~~~~~--~~~~p~VvLATAHPaKFpe~V~~Aig~~ 427 (469)
...|++.-|-+|-+++++.+.-. ..+..+|+.-+-|--|-.++|.+.+|..
T Consensus 348 r~EGIiPA~ESaHAia~aik~A~~~~~~~~Iv~nlSGrG~kD~~~~~~~lg~~ 400 (403)
T PRK13028 348 RVEGIIPALESSHAVAYAMKLAPELPKDQIILVNLSGRGDKDIDYVAELLGLG 400 (403)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHCCC
T ss_conf 81797026556899999999877649998899981688511899999985898
No 43
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=99.08 E-value=1.4e-07 Score=72.97 Aligned_cols=269 Identities=12% Similarity=0.082 Sum_probs=144.5
Q ss_pred CCCCEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 4882546--62138981206823888999999997317982079971665404679998616678559997357767603
Q gi|254780465|r 95 NANEFLL--ELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVV 172 (469)
Q Consensus 95 ~~~~~vl--ELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~ 172 (469)
+.++|+- .|-|-.+..+||+.+.++ +..++++..+.++-.++..+..+.|.+.+.+ +-+++++++.|....+..
T Consensus 29 G~~l~iKRdDl~~~~~~GNK~Rkl~~~---l~~a~~~g~~~lvt~Gg~~SNh~~a~Aa~aa-~~Gl~~~~~~~~~~~~~~ 104 (331)
T PRK03910 29 GRDIYIKRDDLTGLALGGNKTRKLEFL---LADALAQGADTLITAGAIQSNHARQTAAAAA-KLGLKCVLLLENPIPTEA 104 (331)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHH---HHHHHHCCCCEEEECCCCCCHHHHHHHHHHH-HCCCCEEEEEECCCCCCC
T ss_conf 994899847778877653079879999---9999986999899879863169999999999-809916999706788763
Q ss_pred HHCC------CEEECCCCEEEEEECCCHH---HHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCC
Q ss_conf 3213------1134478708997179658---889999997501543135831134556544401105589999987447
Q gi|254780465|r 173 QQKQ------MTTSEASNINVIAVQSSFD---DCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGS 243 (469)
Q Consensus 173 Q~~q------mtt~~~~Nv~~i~v~G~FD---Dcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~ 243 (469)
.... +.-..| ..++-|++.+| ..+.++.++-.. ..+..+.-...-|+..+++++--.+.-.-|+..
T Consensus 105 ~~~~~~gN~ll~~~~G--a~v~~v~~~~~~~~~~~~~~~~l~~~---~~~~y~ip~Ggs~~~g~~G~~~~~~Ei~~Q~~~ 179 (331)
T PRK03910 105 ENYLTNGNRLLDDLFG--AEIEVVPGLTDMMAQLEELAEELRAQ---GRRPYVIPVGGSNPLGALGYVAAALEIAQQLAE 179 (331)
T ss_pred CCHHCCCCHHHHHHCC--CEEEEECCCCCHHHHHHHHHHHHHHH---CCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 0011145599999779--98999688650999999999999982---798158078996411005699999999999985
Q ss_pred CC-CCEEEEEECCCHHHHHHHHHH-HHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 78-873899634657887886677-7508987705872367633567753222010234556564200134013788999
Q gi|254780465|r 244 PN-RNISFSVPTGNFGDIFAGYMA-KMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLF 321 (469)
Q Consensus 244 ~~-~~i~f~VPtGNfGni~Ag~~A-k~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf 321 (469)
.+ ++-.+++|+|+-|.+.+-+.+ +.+|.+.+-+-++...+ +..+++.+.
T Consensus 180 ~~~~~d~Iv~~~GtGgT~aGl~~g~~~~~~~~~viGv~v~~~-----------------------------~~~~~~~v~ 230 (331)
T PRK03910 180 GGVDFDSVVVASGSGGTHAGLAVGLAALGPDIPVIGVTVSRS-----------------------------KAEQEPKVA 230 (331)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCC-----------------------------HHHHHHHHH
T ss_conf 499988799934871669999999996099996799981675-----------------------------888899999
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHCCCEECCC-HHHHHHHHHHHHH
Q ss_conf 87097089999998752026510552022110001-213421388999999999998639598383-3999999999874
Q gi|254780465|r 322 EISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSL-SFSAKRASMEDVNSVIKSVLEKSNYLVDPH-TAVGIHAALACRK 399 (469)
Q Consensus 322 ~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~-~f~s~svsDeet~~~Ik~~y~~~gyiiDPH-TAvG~~aa~~~~~ 399 (469)
.+ .++..+.+... ..++.+.+....+ ....+-+.++|+++.|+.+..++|+++||- ||.++.+..++..
T Consensus 231 ~~-------~~~~~~~l~~~--~~~~~~~~~~~~~~~g~gYg~~~~e~~~ai~~la~~eGI~ldPvYTgKa~~gl~~li~ 301 (331)
T PRK03910 231 EL-------AQATAELLGLP--APIPRAAIRLWDDYVGPGYGVPTDEGLEAIKLLARLEGILLDPVYTGKAMAGLIDLIR 301 (331)
T ss_pred HH-------HHHHHHHHCCC--CCCCHHHEEEECCCCCCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99-------99999982789--9887788587203436723227999999999999975930253267999999999998
Q ss_pred C----CCCCEEEEEC
Q ss_conf 7----9983999971
Q gi|254780465|r 400 S----SSTPMVTLAT 410 (469)
Q Consensus 400 ~----~~~p~VvLAT 410 (469)
. .+.++|++-|
T Consensus 302 ~g~i~~g~~Vv~ihT 316 (331)
T PRK03910 302 KGRFKDGGNVLFIHT 316 (331)
T ss_pred CCCCCCCCEEEEEEC
T ss_conf 499899892999989
No 44
>KOG1250 consensus
Probab=99.01 E-value=3.1e-07 Score=70.54 Aligned_cols=280 Identities=14% Similarity=0.161 Sum_probs=175.5
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE-------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 998751578998999999999863047667860477-------2488254662138981206823888999999997317
Q gi|254780465|r 58 IFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQ-------LNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEER 130 (469)
Q Consensus 58 il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~-------l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~ 130 (469)
+..+|++++-+..+....-.+-|.. -...|+.+ .+-+.|+=-=+--||+|||-.|.. +++.... ++
T Consensus 39 ~~d~~~~~~~p~~~~~~~~~~i~~~---~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~---~~~~kla-~~ 111 (457)
T KOG1250 39 LKDPFCDPENPFYDISSAHFKIYPV---IVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAG---NALQKLA-KQ 111 (457)
T ss_pred CCCCCCCCCCCCCHHHHHHHCCCCC---EECCCCHHHHHHHHHCCCCEEEEEHHCCCCCCEEHHHHH---HHHHHHH-HH
T ss_conf 6676789999651055666402164---543641565410222297169973005644531303178---8999878-76
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHH
Q ss_conf 98207997166540467999861667855999735776760332131134478708997179658889999997501543
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFF 210 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~ 210 (469)
.++--++|++-|+-|-|++.+.+.. ++.+.|.-|. +++.+.-|-....|.+|.. .--+||.++...|++-.++
T Consensus 112 ~~~~gViasSaGNha~a~Ayaa~~L-gipaTIVmP~--~tp~~kiq~~~nlGA~Vil--~G~~~deAk~~a~~lAke~-- 184 (457)
T KOG1250 112 QKKAGVIASSAGNHAQAAAYAARKL-GIPATIVMPV--ATPLMKIQRCRNLGATVIL--SGEDWDEAKAFAKRLAKEN-- 184 (457)
T ss_pred HHCCCEEEECCCCHHHHHHHHHHHC-CCCEEEEECC--CCHHHHHHHHHCCCCEEEE--ECCCHHHHHHHHHHHHHHC--
T ss_conf 2167469705752899999888761-9966999227--8739999998614987999--5643789999999988864--
Q ss_pred HCCCCCCCCCCCCHHHCCCCHHHHHHHH-----HHHCCC-CCCE-EEEEECCCHHHHHHHHH--HHHCCCCCCEEEEECC
Q ss_conf 1358311345565444011055899999-----874477-8873-89963465788788667--7750898770587236
Q gi|254780465|r 211 CHSVNLSGINSINWARIMAQIVYYFVSS-----IALGSP-NRNI-SFSVPTGNFGDIFAGYM--AKMMGLPIEKLIIATN 281 (469)
Q Consensus 211 ~~~~~l~s~NSIN~~Ril~Q~vyYf~a~-----~~~~~~-~~~i-~f~VPtGNfGni~Ag~~--Ak~MGLPI~kli~AtN 281 (469)
+|--|-|-=-+|.|+- .++.+. ..++ .+.||.|.-|- +||.. -|+.|.-++=+-+-|+
T Consensus 185 ------------gl~yI~pfDhP~I~aGqgTig~EIl~ql~~~~~AI~vpVGGGGL-iaGIat~vk~~~p~vkIIGVEt~ 251 (457)
T KOG1250 185 ------------GLTYIPPFDHPDIWAGQGTIGLEILEQLKEPDGAIVVPVGGGGL-IAGIATGVKRVGPHVKIIGVETE 251 (457)
T ss_pred ------------CCEECCCCCCCHHHCCCCHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHHHHHCCCCCEEEEEEC
T ss_conf ------------96544899980032375559999998605788749996077216-89999999973888736887406
Q ss_pred CCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHC-CCCC
Q ss_conf 763356775322201023455656420013401378899987097089999998752026510552022110001-2134
Q gi|254780465|r 282 ENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSL-SFSA 360 (469)
Q Consensus 282 ~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~-~f~s 360 (469)
.-+.+++-++.|.--.-+.+.|++-+.-+-. +..+.++-++. ...+
T Consensus 252 ~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~---------------------------------Vg~~tf~~a~~~~d~v 298 (457)
T KOG1250 252 GAHSFNASLKAGKPVTLPKITSLADGLAVKT---------------------------------VGENTFELAQKLVDRV 298 (457)
T ss_pred CCHHHHHHHHCCCEEECCCCCCHHCCCCCCH---------------------------------HHHHHHHHHHHCCCEE
T ss_conf 7278899874698554464032101233331---------------------------------3289999987448638
Q ss_pred CCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH
Q ss_conf 2138899999999999863959838339999999998
Q gi|254780465|r 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALAC 397 (469)
Q Consensus 361 ~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~ 397 (469)
..|+|+|+...|++++++...++.|-.|.|+++...+
T Consensus 299 vvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~ 335 (457)
T KOG1250 299 VVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG 335 (457)
T ss_pred EEECCHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHC
T ss_conf 9966188999999998752005236249889999705
No 45
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=98.88 E-value=3.4e-07 Score=70.29 Aligned_cols=263 Identities=17% Similarity=0.211 Sum_probs=170.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH--HHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCC
Q ss_conf 98120682388899999999731798207997166540--4679998616678559997357767603321311344787
Q gi|254780465|r 107 PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDT--GAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASN 184 (469)
Q Consensus 107 PT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDT--GsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~N 184 (469)
.|+|||=+|.-+= +.+.+++ +++-=|++|+-|+- |.|-++-+.| |+..|-=|+ -+|+|+=.-|-..|--
T Consensus 26 kTGSFKiRGA~nK---i~~LSe~-~~~~GVvaASAGNHAQGVA~AA~~~G---i~a~IVMPE--~aP~~Kv~AT~~yGAE 96 (381)
T TIGR01127 26 KTGSFKIRGALNK---IAKLSED-QRKRGVVAASAGNHAQGVALAAKVFG---IKAKIVMPE--YAPLSKVKATKSYGAE 96 (381)
T ss_pred CCCCCCCHHHHHH---HHHHCHH-HCCCCEEEECCCCHHHHHHHHHHHCC---CCCEEECCC--CCHHHHHHHHHHCCCE
T ss_conf 1277210114678---8762553-13475577504543789999987618---774687887--6735789997626961
Q ss_pred EEEEEECC-CHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHH-CCCCHHHHHHHHHHHCCCCCCEE-EEEECCCHHHHH
Q ss_conf 08997179-6588899999975015431358311345565444-01105589999987447788738-996346578878
Q gi|254780465|r 185 INVIAVQS-SFDDCQKIVKNLFSDVFFCHSVNLSGINSINWAR-IMAQIVYYFVSSIALGSPNRNIS-FSVPTGNFGDIF 261 (469)
Q Consensus 185 v~~i~v~G-~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~R-il~Q~vyYf~a~~~~~~~~~~i~-f~VPtGNfGni~ 261 (469)
+| .+| +|||+++...++-.. -+.+-+..=|=-= +-+|=.- -|++-.....++ ++||.|-=|=|.
T Consensus 97 --Vi-L~G~~~DEA~~~A~~~~~~------~g~~fvHpF~D~~vmAGQGTi----gLEi~ed~pd~D~viVPVGGGGLIS 163 (381)
T TIGR01127 97 --VI-LHGADYDEAYALAEELAEE------EGRVFVHPFDDEYVMAGQGTI----GLEIMEDLPDVDTVIVPVGGGGLIS 163 (381)
T ss_pred --EE-ECCCCHHHHHHHHHHHHHH------CCCEEEEECCCCEEEECCCHH----HHHHHHCCCCCCEEEEEECCCCHHH
T ss_conf --89-8088707899999999986------098787405887786167489----9999964798137998417871287
Q ss_pred HHHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 8667775089877058-723676335677532220102345565642001340137889998709708999999875202
Q gi|254780465|r 262 AGYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLEN 340 (469)
Q Consensus 262 Ag~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~ 340 (469)
.=-.|-|-=+|==|+| +-+.--+.+.+=|+.|.-...+...|++-=+=+-.|
T Consensus 164 Gv~~a~K~~~P~VkvIGV~aE~ap~m~~Sl~~Gk~~~v~~~~tiADGIaVk~p--------------------------- 216 (381)
T TIGR01127 164 GVASAAKKLNPEVKVIGVEAEGAPSMVESLREGKIKAVESVDTIADGIAVKKP--------------------------- 216 (381)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCEEEECCCCEEECCCEECCC---------------------------
T ss_conf 99999987289947998602785589999851990560456414152116378---------------------------
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC---CCCCEEEEE--CCCCCC
Q ss_conf 651055202211000121342138899999999999863959838339999999998747---998399997--188434
Q gi|254780465|r 341 KKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS---SSTPMVTLA--TAHPSK 415 (469)
Q Consensus 341 ~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~---~~~p~VvLA--TAHPaK 415 (469)
=.+.-+..++.-+.| -.|||||+.++|-.+.|+...+..|-.|+|++|.+....+ +..-.|++| =+-+-=
T Consensus 217 ---G~lTF~i~k~~VD~~--V~V~eeEIA~A~~~LLEr~Ki~aEGAGA~gvAA~L~~K~~~~kG~K~~~v~SGGNID~~~ 291 (381)
T TIGR01127 217 ---GDLTFNIVKEYVDEV--VAVDEEEIAKAILLLLERAKIVAEGAGAVGVAAVLEDKVDYVKGKKVAVVVSGGNIDLNL 291 (381)
T ss_pred ---CCCCHHHHHHHCCCE--EEECHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHH
T ss_conf ---876747899747970--884737799999998607747882745899999997540368982899998547768667
Q ss_pred CHHHHHHH
Q ss_conf 98889998
Q gi|254780465|r 416 FPDTVKAA 423 (469)
Q Consensus 416 Fpe~V~~A 423 (469)
-..+|.+=
T Consensus 292 l~~iI~kG 299 (381)
T TIGR01127 292 LEKIILKG 299 (381)
T ss_pred HHHHHHHH
T ss_conf 77886552
No 46
>KOG1251 consensus
Probab=98.87 E-value=1e-06 Score=66.90 Aligned_cols=257 Identities=17% Similarity=0.163 Sum_probs=168.1
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHCCC
Q ss_conf 5466213898120682388899999999731798207997166540467999861667855999735776-760332131
Q gi|254780465|r 99 FLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-ISVVQQKQM 177 (469)
Q Consensus 99 ~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS~~Q~~qm 177 (469)
+-+|.|.- |+|||=.|.-=-...++ .+ .+..-+++-+||+-|.|.+-|.+ ..++...|.-|++- .+.+--
T Consensus 44 FKcE~fQK-tGaFKfRGAlNav~~l~--~e--k~~kgvithSSGNHaqAlalaAk-~~giPa~IVvP~~AP~~Kv~a--- 114 (323)
T KOG1251 44 FKCENFQK-TGAFKFRGALNAVSSLK--AE--KRAKGVITHSSGNHAQALALAAK-ILGIPATIVVPKDAPICKVAA--- 114 (323)
T ss_pred EEHHHHHH-CCCEEHHHHHHHHHHHH--HH--HHCCCEEEECCCCHHHHHHHHHH-HCCCCEEEEECCCCHHHHHHH---
T ss_conf 63144423-16300046678888766--76--51172586547848999999998-629974998028971787888---
Q ss_pred EEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCC-CCHHHHHHHHHHHCCCCCCE-EEEEECC
Q ss_conf 134478708997179658889999997501543135831134556544401-10558999998744778873-8996346
Q gi|254780465|r 178 TTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIM-AQIVYYFVSSIALGSPNRNI-SFSVPTG 255 (469)
Q Consensus 178 tt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril-~Q~vyYf~a~~~~~~~~~~i-~f~VPtG 255 (469)
..+=|-++|-.+-+-+|-.++.|++.. +....-+---|-.+++ +|-.- ++++..+-.++ ...||.|
T Consensus 115 --~~~Yga~ii~~e~~~~sRE~va~~lte------e~g~~~i~Py~~p~vIaGqgTi----A~ElleqVg~iDalfvpvg 182 (323)
T KOG1251 115 --TRGYGANIIFCEPTVESRESVAKDLTE------ETGYYLIHPYNHPSVIAGQGTI----ALELLEQVGEIDALFVPVG 182 (323)
T ss_pred --HHHCCCEEEEECCCCCHHHHHHHHHHH------HCCCEEECCCCCCCEEECCCHH----HHHHHHHHCCCCEEEEEEC
T ss_conf --875186599966863209999999988------6285786788885644066568----9999985076536999606
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEE--CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 578878866777508987705872--367633567753222010234556564200134013788999870970899999
Q gi|254780465|r 256 NFGDIFAGYMAKMMGLPIEKLIIA--TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKE 333 (469)
Q Consensus 256 NfGni~Ag~~Ak~MGLPI~kli~A--tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~ 333 (469)
.-|-+..--+|-+-=-|=-++..+ .+.||-...|++.+... -.+.+|++--...+.
T Consensus 183 GGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~-l~tp~TIADG~r~~~--------------------- 240 (323)
T KOG1251 183 GGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVH-LDTPKTIADGVRTSH--------------------- 240 (323)
T ss_pred CCCHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCEEE-CCCCHHHHHHHHHCC---------------------
T ss_conf 8604667899874159983799856766666788775497476-588335542023302---------------------
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHCCC-CCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH--HHCCCCCEEEEEC
Q ss_conf 9875202651055202211000121-342138899999999999863959838339999999998--7479983999971
Q gi|254780465|r 334 AFYSLENKKYFRIDSEHLQKMSLSF-SAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALAC--RKSSSTPMVTLAT 410 (469)
Q Consensus 334 ~m~~l~~~g~~~i~~~~l~~l~~~f-~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~--~~~~~~p~VvLAT 410 (469)
+.+-.|.-+++.. +--+|+|+|+++++|.+|++...++.|-.|+|+++++.. +.....+.|+|+-
T Consensus 241 ------------lG~~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~~~~K~igIiLsG 308 (323)
T KOG1251 241 ------------LGPLTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFALNIKRIGIILSG 308 (323)
T ss_pred ------------CCCCCHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf ------------46530699998753336503899999999999987133356226779999853377606723899867
No 47
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=98.82 E-value=7.8e-06 Score=60.80 Aligned_cols=289 Identities=15% Similarity=0.143 Sum_probs=171.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEECCC---CCEEEEEC------CCCCCCCCCCHHHHH-HHHHHHHH---------
Q ss_conf 998999999999863047667860477248---82546621------389812068238889-99999997---------
Q gi|254780465|r 67 IKSSKLRDIVNRSYHCFRNAAVTPLIQLNA---NEFLLELF------HGPTLSFKDIAMQFI-AELMDHIL--------- 127 (469)
Q Consensus 67 i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~---~~~vlELf------HGPT~aFKD~a~q~l-~~~~~~~l--------- 127 (469)
++.++.++.- +....++.-.++||..|.. .+-|-.+| .=--.|||=+|...- ++++..-+
T Consensus 21 ~~~~~~~~~~-~fh~~~p~Y~pTPL~~l~~lA~~lgv~~i~vKDEs~RfgL~sFKaLGasyAi~~~l~~~~~~~~~~~~~ 99 (396)
T TIGR03528 21 LSKEEAEKVR-AFHQSFPGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSF 99 (396)
T ss_pred CCHHHHHHHH-HHHHCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCCH
T ss_conf 7999999999-999628889988632559999974988389966877689986575079999999999984898554798
Q ss_pred --------HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHH
Q ss_conf --------317982079971665404679998616678559997357767603321311344787089971796588899
Q gi|254780465|r 128 --------EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199 (469)
Q Consensus 128 --------~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~ 199 (469)
++.-+.+++++||-|+-|-+++.+.+ .-+++..|+-|++ +|+.-..-|-. . +..++-++|++||+..
T Consensus 100 ~~l~~~~~~~~~~~~t~vtATdGNHG~~VA~aA~-~lG~ka~I~mp~~-~~~~k~~air~-~--GAeVv~~~~~YDdav~ 174 (396)
T TIGR03528 100 EKLKSNEIREKLGDITFVTATDGNHGRGVAWAAN-QLGQKSVVYMPKG-SAQIRLENIRA-E--GAECTITDLNYDDAVR 174 (396)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH-HCCCCEEEEECCC-CCHHHHHHHHH-C--CCEEEEECCCHHHHHH
T ss_conf 8874399987506808998078718999999999-8599889991799-99999999997-5--9989997897799999
Q ss_pred HHHHHHCCHHHHCCCCCCC------CCCCCHHHCCCCHHHHHHHHHHHCCCC--CCEEEEEECCC--HHHHHHHHHHHHC
Q ss_conf 9999750154313583113------455654440110558999998744778--87389963465--7887886677750
Q gi|254780465|r 200 IVKNLFSDVFFCHSVNLSG------INSINWARIMAQIVYYFVSSIALGSPN--RNISFSVPTGN--FGDIFAGYMAKMM 269 (469)
Q Consensus 200 ~Vk~~f~D~~~~~~~~l~s------~NSIN~~Ril~Q~vyYf~a~~~~~~~~--~~i~f~VPtGN--fGni~Ag~~Ak~M 269 (469)
..++.-.. +...|.+ -..|-..=+-+|.+.-....-|+...+ .+.-+.+|.|- +.-..++|++.++
T Consensus 175 ~A~~~A~e----~g~~lV~Dtsw~gYediP~~Im~Gy~T~~~Ei~eQl~~~~~~~pthV~lq~GvGglaaav~~~~~~~~ 250 (396)
T TIGR03528 175 LAWKMAQE----NGWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAY 250 (396)
T ss_pred HHHHHHHH----CCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99999986----59879705776671017388845399999999999885389889779982780078999999999972
Q ss_pred CCCCCEEE-EECCCCCHHHHHHHC--CCHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 89877058-723676335677532--22010-234556564200134013788999870970899999987520265105
Q gi|254780465|r 270 GLPIEKLI-IATNENDTLVRMFDM--GMYRP-EIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFR 345 (469)
Q Consensus 270 GLPI~kli-~AtN~NdiL~rf~~t--G~y~~-~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~ 345 (469)
|-..-++| +--..-+-+++-+.. |.-.. .....|+.--|+.+.||.. -|.+.
T Consensus 251 ~~~~p~iivVEP~~A~c~~~S~~~~~g~p~~v~g~~~TIm~GL~cg~ps~l---aw~iL--------------------- 306 (396)
T TIGR03528 251 GEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTI---GWEIL--------------------- 306 (396)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCHHCCCCCCCCCHH---HHHHH---------------------
T ss_conf 778987999786433066798986179827607984121112457998637---89999---------------------
Q ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH----HCCCEECCCHHHHHHHHHHH
Q ss_conf 52022110001213421388999999999998----63959838339999999998
Q gi|254780465|r 346 IDSEHLQKMSLSFSAKRASMEDVNSVIKSVLE----KSNYLVDPHTAVGIHAALAC 397 (469)
Q Consensus 346 i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~----~~gyiiDPHTAvG~~aa~~~ 397 (469)
++.-+ ..-+|+|+++...||.+.. +.+++--|-.|+|+.++...
T Consensus 307 ------~~~vd--~~vtV~D~~~a~amr~La~~~~~d~~I~sGesGAagla~L~~~ 354 (396)
T TIGR03528 307 ------RDYAS--QFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAV 354 (396)
T ss_pred ------HHCCC--EEEEECHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHH
T ss_conf ------96299--7999877999999999837557999863367436889999999
No 48
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=98.80 E-value=3.5e-06 Score=63.20 Aligned_cols=268 Identities=22% Similarity=0.237 Sum_probs=159.7
Q ss_pred CEEEECC---C----CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 6047724---8----8254662138981206823888999999997317--98207997166540467999861667855
Q gi|254780465|r 89 TPLIQLN---A----NEFLLELFHGPTLSFKDIAMQFIAELMDHILEER--DHYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 89 ~pl~~l~---~----~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~--~~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
+||.+|. . +.|+=--|-.|++|-||.....| +++..++. ..-.+|+=||||.||-|-+...+ ..+.+
T Consensus 12 TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~m---I~~Ae~~G~l~pG~tIVE~TSGNTGIaLA~vaa-~~Gy~ 87 (300)
T COG0031 12 TPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYM---IEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-AKGYR 87 (300)
T ss_pred CCCEEECCCCCCCCCEEEEEHHHCCCCCCHHHHHHHHH---HHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCC
T ss_conf 97276035688877249987201298776257799999---999998498799998997089727999999999-81992
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEE-CCCHHHHHHHHHHHHCCHHHHCCCCC-CCCCCCCHHHCCCCHHHHHHH
Q ss_conf 9997357767603321311344787089971-79658889999997501543135831-134556544401105589999
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAV-QSSFDDCQKIVKNLFSDVFFCHSVNL-SGINSINWARIMAQIVYYFVS 237 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v-~G~FDDcq~~Vk~~f~D~~~~~~~~l-~s~NSIN~~Ril~Q~vyYf~a 237 (469)
+++.-|. ..|.--+++|... |-.|+...- +|....+-.-++++.+..+= .-+.+ ---|--|| -+||..+
T Consensus 88 ~~ivmP~-~~S~er~~~l~a~-GAevi~t~~~~g~~~~a~~~a~el~~~~p~-~~~~~~Qf~NpaN~------~aH~~tT 158 (300)
T COG0031 88 LIIVMPE-TMSQERRKLLRAL-GAEVILTPGAPGNMKGAIERAKELAAEIPG-YAVWLNQFENPANP------EAHYETT 158 (300)
T ss_pred EEEEECC-CCCHHHHHHHHHC-CCEEEECCCCCCCHHHHHHHHHHHHHHCCC-CEECHHHCCCCCCH------HHHHHHH
T ss_conf 8999589-8999999999982-998998379877459999999999974988-36755343896478------9897612
Q ss_pred HHHHCCC-CC-CEEEEEECCCHHHHHH--HHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCH
Q ss_conf 9874477-88-7389963465788788--667775089877058723676335677532220102345565642001340
Q gi|254780465|r 238 SIALGSP-NR-NISFSVPTGNFGDIFA--GYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIP 313 (469)
Q Consensus 238 ~~~~~~~-~~-~i~f~VPtGNfGni~A--g~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~ 313 (469)
..++.+. .+ .-.|+.-.|.-|-++. -|+ |. --|-=++|++-=++-++... |. .+.+ .+=+...+ +|
T Consensus 159 ~~EI~~~~~~~~d~fVagvGTGGTitGvar~L-k~-~~p~i~iv~vdP~~S~~~~~---G~-g~~~-i~GIG~~~---ip 228 (300)
T COG0031 159 GPEIWQQTDGKVDAFVAGVGTGGTITGVARYL-KE-RNPNVRIVAVDPEGSVLLSG---GE-GPHK-IEGIGAGF---VP 228 (300)
T ss_pred HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-HH-HCCCCEEEEECCCCCCCCCC---CC-CCCC-CCCCCCCC---CC
T ss_conf 89999973799998999378526589999999-86-28983799977788855579---98-8862-77779886---77
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHH
Q ss_conf 13788999870970899999987520265105520221100012134213889999999999986395983833999999
Q gi|254780465|r 314 SNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHA 393 (469)
Q Consensus 314 SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~a 393 (469)
.|+-+- + .-...+|+|++-..+.|++..+.|.++=+-|...+.|
T Consensus 229 ~~~~~~----------------------------------~--iD~v~~V~d~~A~~~~r~La~~eGi~vG~SsGA~~~a 272 (300)
T COG0031 229 ENLDLD----------------------------------L--IDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAA 272 (300)
T ss_pred CCCCCC----------------------------------C--CCEEEEECHHHHHHHHHHHHHHHCEEECCCHHHHHHH
T ss_conf 324643----------------------------------3--6059997879999999999998391214638999999
Q ss_pred HHHHHHCC--CCCEEEEECCCCCC
Q ss_conf 99987479--98399997188434
Q gi|254780465|r 394 ALACRKSS--STPMVTLATAHPSK 415 (469)
Q Consensus 394 a~~~~~~~--~~p~VvLATAHPaK 415 (469)
+.+.-... +..+|++-+...-|
T Consensus 273 A~~~a~~~~~g~~IVti~pD~G~R 296 (300)
T COG0031 273 ALKLAKELPAGKTIVTILPDSGER 296 (300)
T ss_pred HHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 999998659998699997897310
No 49
>TIGR02079 THD1 threonine dehydratase; InterPro: IPR011820 This entry represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases are described by IPR005787 from INTERPRO and IPR005789 from INTERPRO. The sequences described by this entry are exclusively found in species containing the rest of the isoleucine pathway and which are generally lacking in members of the other two clades of threonine dehydratases. The sequences associated with this entry are often cluster with other elements of the isoleucine pathway.; GO: 0004794 L-threonine ammonia-lyase activity, 0030170 pyridoxal phosphate binding, 0009097 isoleucine biosynthetic process.
Probab=98.67 E-value=3.9e-06 Score=62.93 Aligned_cols=333 Identities=17% Similarity=0.185 Sum_probs=205.1
Q ss_pred HHHHHHHCCCCCCCEEEECCCCCEEEEECCC----------CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 9998630476678604772488254662138----------981206823888999999997317982079971665404
Q gi|254780465|r 76 VNRSYHCFRNAAVTPLIQLNANEFLLELFHG----------PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTG 145 (469)
Q Consensus 76 i~~ay~~f~~~~~~pl~~l~~~~~vlELfHG----------PT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTG 145 (469)
|++|+..- .+|++=++|..|.++-|++|- +=.|||=.|+ =+.+...|++.++.--|+||+-|+-.
T Consensus 3 ie~A~~~~--~~vv~~TPL~~n~~LS~~Y~a~i~LKREDLq~VRSYKiRGA---yN~lr~~lS~~~l~~GvVCASAGNHA 77 (415)
T TIGR02079 3 IEAARKRI--KEVVKHTPLQKNERLSEKYGANIYLKREDLQEVRSYKIRGA---YNKLRKQLSDEQLAKGVVCASAGNHA 77 (415)
T ss_pred HHHHHHHH--HHHCCCCCCCCCHHHHHHHCCCEEEEECCCCCCCHHHHHHH---HHHHHHHHHHHHHCCEEEECCCCCHH
T ss_conf 68899998--63058987870135557768616775103673310467779---99999997464420824751566612
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEE-ECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCH
Q ss_conf 6799986166785599973577676033213113-447870899717965888999999750154313583113455654
Q gi|254780465|r 146 AAAIKAFAGKKRINMYILFPEGRISVVQQKQMTT-SEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINW 224 (469)
Q Consensus 146 sAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt-~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~ 224 (469)
.=.|.||+. -+|+-.|+-|- ++|-|+.-=+- ..+.+|-+|=+=-+||+|-.-.++-..++...-=..+ ---
T Consensus 78 QGfAYaC~~-lgv~G~vfmP~--~TPkQK~d~vk~FGge~i~~iL~GDtFD~~aa~A~~~~~~~g~~~iPPF---DD~-- 149 (415)
T TIGR02079 78 QGFAYACRK-LGVHGRVFMPA--TTPKQKVDKVKLFGGEFIEIILVGDTFDEAAAAAKESVEKEGKTFIPPF---DDP-- 149 (415)
T ss_pred HHHHHHHCC-CCCCEEEEECC--CCCCCCEEEEEECCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEECCCC---CCH--
T ss_conf 468998504-87440788714--3797761335522861899998557057899999999997189016899---875--
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH--HHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCC
Q ss_conf 44011055899999874477887389963465788788--6677750898770587236763356775322201023455
Q gi|254780465|r 225 ARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFA--GYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVME 302 (469)
Q Consensus 225 ~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~A--g~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~ 302 (469)
-=|-+|-.--..---|+.++.++-.+.+|.|--|=+.. +|++.+ -|..++|- +=|
T Consensus 150 ~IIeGQGTva~Eil~ql~~~~k~D~V~~pVGGGGLisG~~~yl~~~--s~~TkiiG---------------------vEP 206 (415)
T TIGR02079 150 DIIEGQGTVAVEILEQLEEETKIDYVVVPVGGGGLISGVTSYLKEK--SPKTKIIG---------------------VEP 206 (415)
T ss_pred HHHHCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHC--CCCCEEEE---------------------ECC
T ss_conf 6651102765667750586767768998477405788899987311--78641787---------------------468
Q ss_pred CCCCCCCCCCHHH----H---HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 6564200134013----7---88999870970899999987520265105520221100012134213889999999999
Q gi|254780465|r 303 TTSPAMDIQIPSN----F---ERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSV 375 (469)
Q Consensus 303 T~SpsMDI~v~SN----f---ERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~ 375 (469)
+=+|||.-+...| + ..++ |+..|++. | .|.-+.++.+-....=..|++-.+..+|-.+
T Consensus 207 ~GAPsm~~sL~~gevvTL~kiD~FV------DGAAV~rv-------G--~LnF~~~k~~~d~v~~~~v~EGaVC~tiLdl 271 (415)
T TIGR02079 207 EGAPSMKASLEAGEVVTLDKIDKFV------DGAAVKRV-------G--DLNFKALKKVVDEVEVTLVPEGAVCSTILDL 271 (415)
T ss_pred CCHHHHHHHHHCCCCEEECCCCCCC------CHHHHHHH-------H--HHHHHHHHHHHCCEEEEECCCCCHHHHHHHH
T ss_conf 8648899999648967413678530------41789878-------6--6889999876501475863798524667885
Q ss_pred HHHCCCEECCCHHHHHHHHHHHH-HCC-CCCEEEEE---CCCCCCCHHHHHHHH---CC-------CCCCCHHHHHHHCC
Q ss_conf 98639598383399999999987-479-98399997---188434988899980---87-------98889889887417
Q gi|254780465|r 376 LEKSNYLVDPHTAVGIHAALACR-KSS-STPMVTLA---TAHPSKFPDTVKAAS---GI-------VPDCPISLEQMMRR 440 (469)
Q Consensus 376 y~~~gyiiDPHTAvG~~aa~~~~-~~~-~~p~VvLA---TAHPaKFpe~V~~Ai---g~-------~~~~P~~L~~l~~k 440 (469)
|+..|.++.|-.|-.++|+.++. ... +..+||+= ==-=.-.+|+=++|+ |. -|..|=.|++.++
T Consensus 272 Yn~EgiVaEPAGALSiAAL~~~~r~ei~gKTVVC~vSGGNNDi~R~~Ei~eRsl~y~GLKhYFiv~FPQRpGALreFln- 350 (415)
T TIGR02079 272 YNLEGIVAEPAGALSIAALEELSREEIKGKTVVCVVSGGNNDIERTEEIRERSLLYEGLKHYFIVRFPQRPGALREFLN- 350 (415)
T ss_pred HHCCCEEEECCHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH-
T ss_conf 4168269815136679998751220046972799952775753313678988887317703687527898863688765-
Q ss_pred CCCEEECCCC-HHHHHHHHHHHHHH
Q ss_conf 2110106899-99999999961155
Q gi|254780465|r 441 PENCKVMNKN-IDEIKKFIKKRNME 464 (469)
Q Consensus 441 ~e~~~~l~nd-~~~ik~fI~~k~~~ 464 (469)
.+|.|+ -=.--+|.+|+|+|
T Consensus 351 ----~vLGP~DDIT~FEY~KK~nRe 371 (415)
T TIGR02079 351 ----DVLGPNDDITKFEYTKKSNRE 371 (415)
T ss_pred ----HHCCCCCCCCCCEEEECCCCC
T ss_conf ----406788752331000201478
No 50
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=98.66 E-value=2.9e-05 Score=56.91 Aligned_cols=267 Identities=9% Similarity=0.054 Sum_probs=139.3
Q ss_pred CCEEEEECCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC--CH
Q ss_conf 825466213898120---6823888999999997317982079971665404679998616678559997357767--60
Q gi|254780465|r 97 NEFLLELFHGPTLSF---KDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI--SV 171 (469)
Q Consensus 97 ~~~vlELfHGPT~aF---KD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v--S~ 171 (469)
++||-.=.--|+++| |++.|+++ +..++++..+.++..+++.+..+-|.+.+.+ +-+++++++.+...- .+
T Consensus 18 ~iyvKRdDl~~~~~~gGNK~RkL~~~---l~~a~~~g~~~lvt~Gg~~SNh~~a~Aaaa~-~~Gl~~~~~~rg~~~~~~~ 93 (307)
T cd06449 18 EIYAKRDDCNSGLAFGGNKIRKLEYL---LPDALAKGADTLVTVGGIQSNHTRQVAAVAA-KLGLKCVLVQENWVPYSDA 93 (307)
T ss_pred EEEEEECCCCCCCCCCCHHHHHHHHH---HHHHHHCCCCEEEECCCCCCHHHHHHHHHHH-HHCCCEEEEEECCCCCCCH
T ss_conf 79998356877665411289999999---9999987999999878876568999999999-8199779998277677625
Q ss_pred HHHC----CCEEECCCCEEEEEECCCHH-HHHHHHHHHHCCHH--HHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 3321----31134478708997179658-88999999750154--31358311345565444011055899999874477
Q gi|254780465|r 172 VQQK----QMTTSEASNINVIAVQSSFD-DCQKIVKNLFSDVF--FCHSVNLSGINSINWARIMAQIVYYFVSSIALGSP 244 (469)
Q Consensus 172 ~Q~~----qmtt~~~~Nv~~i~v~G~FD-Dcq~~Vk~~f~D~~--~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~ 244 (469)
...+ .+....|-.|+. |....| +......+++.... ..+-+.+-..+|.|....++.+--...-.-|....
T Consensus 94 ~~~~~gNl~l~~l~Ga~v~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~y~Ip~Ggs~~~~~~~Gy~~~~~Ei~~q~~~~ 171 (307)
T cd06449 94 VYDRVGNILLSRIMGADVRL--VSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLGYVGFVLEIAQQEEEL 171 (307)
T ss_pred HHHHCCHHHHHHHCCCEEEE--ECCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 45512739999746987999--8888357689999999999996089658947899889975407999999999999964
Q ss_pred CCC-EEEEEECCCHHHHHHHHHH-HHCCCCCCEEEEECC-CCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 887-3899634657887886677-750898770587236-7633567753222010234556564200134013788999
Q gi|254780465|r 245 NRN-ISFSVPTGNFGDIFAGYMA-KMMGLPIEKLIIATN-ENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLF 321 (469)
Q Consensus 245 ~~~-i~f~VPtGNfGni~Ag~~A-k~MGLPI~kli~AtN-~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf 321 (469)
+.. -.+++|+|.-|.+.+-..+ +..|.+.+=+-+..- .+... ..+++-
T Consensus 172 ~~~~d~iv~~~GtGgT~aGL~~g~~~~~~~~~viGv~v~~~~~~~-----------------------------~~~~~~ 222 (307)
T cd06449 172 GFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKT-----------------------------KAQVLR 222 (307)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHH-----------------------------HHHHHH
T ss_conf 999886999348755699999999974999977999836857889-----------------------------999999
Q ss_pred HHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH-CCCCCCCCCHHHHHHHHHHHHHHCCCEECCC-HHHHHHHHHHHHH
Q ss_conf 8709708999999875202651055202211000-1213421388999999999998639598383-3999999999874
Q gi|254780465|r 322 EISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMS-LSFSAKRASMEDVNSVIKSVLEKSNYLVDPH-TAVGIHAALACRK 399 (469)
Q Consensus 322 ~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~-~~f~s~svsDeet~~~Ik~~y~~~gyiiDPH-TAvG~~aa~~~~~ 399 (469)
. ....+... ...++...+.-.. -.+.++-+.++|.++.|+.+.+.+|+++||- ||-++.+..++..
T Consensus 223 ~--------~~~~~~~~----~~~~~~~~~~~~~~~~g~gYg~~~~e~~~ai~~~a~~eGI~lDPvYTgKa~~gl~~~i~ 290 (307)
T cd06449 223 I--------AQAKLAEE----GLEVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVR 290 (307)
T ss_pred H--------HHHHHHHH----CCCCCHHHEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 9--------99999971----66898788342025638842747999999999999982912370278999999999998
Q ss_pred CC----CCCEEEEEC
Q ss_conf 79----983999971
Q gi|254780465|r 400 SS----STPMVTLAT 410 (469)
Q Consensus 400 ~~----~~p~VvLAT 410 (469)
.+ +.++|++=|
T Consensus 291 ~g~~~~~~~IlfiHT 305 (307)
T cd06449 291 NGEFKEGSKVLFIHL 305 (307)
T ss_pred CCCCCCCCCEEEEEC
T ss_conf 699999791899959
No 51
>KOG1252 consensus
Probab=98.38 E-value=5.9e-05 Score=54.70 Aligned_cols=270 Identities=18% Similarity=0.156 Sum_probs=155.0
Q ss_pred CEEEECCC-------CCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf 60477248-------825466213898120682388899999999731---79820799716654046799986166785
Q gi|254780465|r 89 TPLIQLNA-------NEFLLELFHGPTLSFKDIAMQFIAELMDHILEE---RDHYITIVGATSGDTGAAAIKAFAGKKRI 158 (469)
Q Consensus 89 ~pl~~l~~-------~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~---~~~~~~il~ATSGDTGsAa~~a~~~~~~i 158 (469)
+|++.|++ +.++=-=+--||+|-||.=. -+|++-+.++ ...+-+++-+|||+||.+-+..++ ..+.
T Consensus 53 TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia---~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~~~a-~~Gy 128 (362)
T KOG1252 53 TPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIA---WSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAYMAA-LRGY 128 (362)
T ss_pred CCEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHH---HHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHH-HCCC
T ss_conf 96697015667865238877510377665688899---9999999975985589617982699853899999999-7396
Q ss_pred EEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCC----CC-CCCCCCHHHCCCCHHH
Q ss_conf 599973577676033213113447870899717965888999999750154313583----11-3455654440110558
Q gi|254780465|r 159 NMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVN----LS-GINSINWARIMAQIVY 233 (469)
Q Consensus 159 ~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~----l~-s~NSIN~~Ril~Q~vy 233 (469)
++++.-|.. +|.-.+.+|-+..++ |.-....--++..+..+++. +.+.++.. |- =-|+-|.. .+
T Consensus 129 k~i~tmP~~-ms~Ek~~~l~a~Gae-ii~tp~a~~~~~~e~ai~~a---~~l~~~~pna~~l~Qf~np~Np~------~h 197 (362)
T KOG1252 129 KCIITMPEK-MSKEKRILLRALGAE-IILTPPAAGMKGPESAIGKA---EELLNKTPNAYILDQFHNPGNPL------AH 197 (362)
T ss_pred EEEEEECHH-HHHHHHHHHHHCCCE-EEECCHHHCCCCHHHHHHHH---HHHHHHCCCHHHHHHHCCCCCCC------CC
T ss_conf 399990424-517899999971887-99568687247718899999---99998688738788742888853------01
Q ss_pred HHHHHHHH-CCCCCCE-EEEEECCCHHHHHH-HHHHHHCCCCCCEEEEECCCCCHHHHHHHCCC--HHCCCCCCCCCCCC
Q ss_conf 99999874-4778873-89963465788788-66777508987705872367633567753222--01023455656420
Q gi|254780465|r 234 YFVSSIAL-GSPNRNI-SFSVPTGNFGDIFA-GYMAKMMGLPIEKLIIATNENDTLVRMFDMGM--YRPEIVMETTSPAM 308 (469)
Q Consensus 234 Yf~a~~~~-~~~~~~i-~f~VPtGNfGni~A-g~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~--y~~~~~~~T~SpsM 308 (469)
|...+-++ .+...++ .|+.+.|.-|-|+. |-+.|+.|.++ +++.+--+--++.+....|. |.-...=-
T Consensus 198 y~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~-kVv~vdp~~S~~~~~~~~g~~~~~I~GIGy------ 270 (362)
T KOG1252 198 YETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNI-KVVGVDPQESIVLSGGKPGPTFHKIQGIGY------ 270 (362)
T ss_pred CCCCCHHHHHHHCCCCCEEEECCCCCCEEEHHHHHHHHHCCCC-EEEEECCCCCEEECCCCCCCCCCCCCCCCC------
T ss_conf 2564289999826997789962688850200668899758997-799856873302047768987654000245------
Q ss_pred CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHH
Q ss_conf 01340137889998709708999999875202651055202211000121342138899999999999863959838339
Q gi|254780465|r 309 DIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTA 388 (469)
Q Consensus 309 DI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTA 388 (469)
| -+|.|+.|-+ +-++ ..++++|-..+-|++-.+.|+++-.-|.
T Consensus 271 g-~~p~~ld~~~----------vd~~--------------------------~~~~~d~A~~~Ar~La~eeGll~G~SSG 313 (362)
T KOG1252 271 G-FIPTTLDTKL----------VDEV--------------------------LKVSSDEAIEMARRLALEEGLLVGISSG 313 (362)
T ss_pred C-CCCCCCCHHH----------HHHH--------------------------HHHCCHHHHHHHHHHHHHHCEEECCCCH
T ss_conf 7-6764211577----------8899--------------------------9718788999999999850841055521
Q ss_pred HHHHHHHHHHHCC-CCCEEEEEC-CCCCCCH
Q ss_conf 9999999987479-983999971-8843498
Q gi|254780465|r 389 VGIHAALACRKSS-STPMVTLAT-AHPSKFP 417 (469)
Q Consensus 389 vG~~aa~~~~~~~-~~p~VvLAT-AHPaKFp 417 (469)
..+.|+.+.-..+ +.--++..| ..+.++-
T Consensus 314 an~~aAl~~a~~~en~~kliV~~~pd~ge~Y 344 (362)
T KOG1252 314 ANVAAALKLAKRPENAGKLIVVTFPDFGERY 344 (362)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCHHH
T ss_conf 9999999987452347718999878862232
No 52
>TIGR02991 ectoine_eutB ectoine utilization protein EutB; InterPro: IPR014333 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine. Members resemble threonine dehydratases. .
Probab=98.27 E-value=0.00023 Score=50.63 Aligned_cols=256 Identities=20% Similarity=0.223 Sum_probs=170.2
Q ss_pred EEEEE-CCCCCCCCCCCHHHHHHHHHHH--HHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEE---ECCCCCCCHH
Q ss_conf 54662-1389812068238889999999--9731798207997166540467999861667855999---7357767603
Q gi|254780465|r 99 FLLEL-FHGPTLSFKDIAMQFIAELMDH--ILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYI---LFPEGRISVV 172 (469)
Q Consensus 99 ~vlEL-fHGPT~aFKD~a~q~l~~~~~~--~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~v---lyP~g~vS~~ 172 (469)
-.|-| .|=+|+|||=.|. ++- .|....+..-|++|+||+-|-|.++|.+...-.-+++ |-|.+||++|
T Consensus 36 V~LKLE~~Q~~GsFKLRGA------~NAvlSL~~~~r~~Gvv~aSTGNHGRalA~AA~~~g~~a~ICMS~LVP~NKv~~I 109 (318)
T TIGR02991 36 VHLKLEHRQTTGSFKLRGA------TNAVLSLSDAERAAGVVAASTGNHGRALAYAAAKEGVRAVICMSELVPQNKVDEI 109 (318)
T ss_pred EEEEECCCCCCCCCHHHHH------HHHHHCCCHHHHCCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHH
T ss_conf 1554226455342012235------6666312514242713786058625799999985598289971223763206889
Q ss_pred HHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCCCCCE-EE
Q ss_conf 321311344787089971796588899999975015431358311345565-4440110558999998744778873-89
Q gi|254780465|r 173 QQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSPNRNI-SF 250 (469)
Q Consensus 173 Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~~~~i-~f 250 (469)
.+ .|-+|+.++ -+=||+|+=|.++-.++-+. .+=--. ..=|-+|=. -.+++.++-..+ .+
T Consensus 110 R~------lGAevrIvG--~SQDdAQ~EVeRLv~~~Gl~------~~PPFD~~~i~AGQGT----~gLE~~~~~Pd~~~v 171 (318)
T TIGR02991 110 RR------LGAEVRIVG--RSQDDAQEEVERLVAERGLV------MLPPFDHPDIVAGQGT----LGLEVVEQMPDLATV 171 (318)
T ss_pred HH------CCCCEEEEC--CCCHHHHHHHHHHHHCCCCE------EECCCCCCCCEECCCH----HHHHHHHCCCCCEEE
T ss_conf 74------598079941--78345789999998618948------7179897100105743----667786307850168
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH
Q ss_conf 963465788788667775089877058-7236763356775322201023455656420013401378899987097089
Q gi|254780465|r 251 SVPTGNFGDIFAGYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSL 329 (469)
Q Consensus 251 ~VPtGNfGni~Ag~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~ 329 (469)
-||-.--|-+..-=.|-|-=-|--+.| ++-.+=-..+..++.|.=-.-.-.+|++-|+==++=
T Consensus 172 LVplSGGGL~~Gva~avKa~~P~~rVIG~sMeRGAAM~~s~~AGrPv~V~E~ptLADSLGGGIG---------------- 235 (318)
T TIGR02991 172 LVPLSGGGLASGVAVAVKALRPDTRVIGVSMERGAAMKASLKAGRPVLVEELPTLADSLGGGIG---------------- 235 (318)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHCCCCCC----------------
T ss_conf 7741576467889988633799725887411013799999845896354245112545167613----------------
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHC-CCCCEEEE
Q ss_conf 99999875202651055202211000121342138899999999999863959838339999999998747-99839999
Q gi|254780465|r 330 LVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKS-SSTPMVTL 408 (469)
Q Consensus 330 ~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~-~~~p~VvL 408 (469)
|++.-.|.++.+.+..+ --++++|+...|++.|.+...+++=-.|||+.|...-+.. ..-|+++|
T Consensus 236 --------LdNr~TF~~c~~llDei------vL~sE~EIAagi~HAy~eE~~~vEGaGaVGiaAlLAGKi~~~~Gp~~~~ 301 (318)
T TIGR02991 236 --------LDNRVTFAMCKELLDEI------VLVSEDEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKIKDVKGPIVVL 301 (318)
T ss_pred --------HHHHHHHHHHHHHHHHE------EEECHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHCCCCCCCCCEEEE
T ss_conf --------13468999999872115------6423478888987522321104305666899988611001579988999
No 53
>TIGR01136 cysKM cysteine synthases; InterPro: IPR005856 This model discriminates cysteine synthases (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=97.55 E-value=0.01 Score=39.14 Aligned_cols=267 Identities=20% Similarity=0.245 Sum_probs=158.3
Q ss_pred CEEEECCC-----CCEE-EEEC-----CCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 60477248-----8254-6621-----38981206823888999999997317--9820799716654046799986166
Q gi|254780465|r 89 TPLIQLNA-----NEFL-LELF-----HGPTLSFKDIAMQFIAELMDHILEER--DHYITIVGATSGDTGAAAIKAFAGK 155 (469)
Q Consensus 89 ~pl~~l~~-----~~~v-lELf-----HGPT~aFKD~a~q~l~~~~~~~l~~~--~~~~~il~ATSGDTGsAa~~a~~~~ 155 (469)
+||++|++ .-.- .++| ..|.+|=||... -.|+..+.++. ++--+|+=||||+||-|-|-..+ .
T Consensus 8 TPLV~L~RCirl~~~~~~~~v~~KLE~~NP~gSVKDR~A---~~MI~~AE~~G~lk~G~~iiEaTSGNTGIaLAMvAA-a 83 (315)
T TIGR01136 8 TPLVRLNRCIRLSEGCDEAEVLVKLEGFNPGGSVKDRIA---LNMILDAEKRGLLKPGTTIIEATSGNTGIALAMVAA-A 83 (315)
T ss_pred CCEEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHH---HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH-H
T ss_conf 871441003542789885179999706698976656888---999999986588788888984277844899999998-6
Q ss_pred CCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC---CCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHH
Q ss_conf 785599973577676033213113447870899717---96588899999975015431358311345565444011055
Q gi|254780465|r 156 KRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ---SSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIV 232 (469)
Q Consensus 156 ~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~---G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~v 232 (469)
++-++++.=|+. .|.--|+-|.....+=|.+=+-+ |-=|-++.|+.+-=...-.-.. + -|-=|| -+
T Consensus 84 rGYkliL~MPet-mS~ERr~~l~ayGA~L~LT~~~~GM~GAi~kA~el~~~~p~~~~~l~Q--F--~NpaNp------~~ 152 (315)
T TIGR01136 84 RGYKLILTMPET-MSLERRKLLKAYGAELILTPAEEGMKGAIDKAEELAAETPNKYVMLDQ--F--ENPANP------EA 152 (315)
T ss_pred CCCCEEEECCCC-HHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCC--C--CCCCHH------HH
T ss_conf 199189985887-178999999870966988373357577899999999858896210332--5--885214------76
Q ss_pred HHHHHHHHHC-CCCCCEE-EEEECCCHHHHHHHHHHHHC--CCC----CCEEEEECCCCC-HHHHHHHCCCHHC--CCCC
Q ss_conf 8999998744-7788738-99634657887886677750--898----770587236763-3567753222010--2345
Q gi|254780465|r 233 YYFVSSIALG-SPNRNIS-FSVPTGNFGDIFAGYMAKMM--GLP----IEKLIIATNEND-TLVRMFDMGMYRP--EIVM 301 (469)
Q Consensus 233 yYf~a~~~~~-~~~~~i~-f~VPtGNfGni~Ag~~Ak~M--GLP----I~kli~AtN~Nd-iL~rf~~tG~y~~--~~~~ 301 (469)
||.....++- +-...|+ |+==.|-=|=|+. +++-+ =.| | ++|+.-=.+- +|-.-+..-.-+| ++ .
T Consensus 153 H~~TTGpEIw~dt~G~id~FVaG~GTGGTItG--vgr~LK~~~pkG~~i-~i~avEP~~s~~Ls~GLAG~~i~pGpHK-I 228 (315)
T TIGR01136 153 HRKTTGPEIWRDTDGRIDHFVAGVGTGGTITG--VGRVLKEQNPKGKNI-QIVAVEPAESPVLSGGLAGEEIKPGPHK-I 228 (315)
T ss_pred HHCCCHHHHHHHCCCCEEEEEEECCCCCCHHH--HHHHHHHHCCCCCEE-EEEEEECCCCCHHHHHHCCCCCCCCCCC-C
T ss_conf 23056579997328923589971156751116--898986326899617-9999756873010011122223679287-7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 56564200134013788999870970899999987520265105520221100012134213889999999999986395
Q gi|254780465|r 302 ETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNY 381 (469)
Q Consensus 302 ~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gy 381 (469)
+=+.+.- +|.+|.+-++|- =..|+++|-.++-|++-++.|+
T Consensus 229 qgig~gF---iP~iLd~~~~D~------------------------------------v~~V~~edA~~~ARrLA~~EGI 269 (315)
T TIGR01136 229 QGIGAGF---IPKILDRSLIDE------------------------------------VITVSDEDAIETARRLAREEGI 269 (315)
T ss_pred CCCCCCC---CCCCCCCCCCCE------------------------------------EEECCHHHHHHHHHHHHHHCCE
T ss_conf 7888555---763137113310------------------------------------4641828999999999874680
Q ss_pred EECCCHHHHHHHHHHHHHC-----CCCCEEEEECCCC
Q ss_conf 9838339999999998747-----9983999971884
Q gi|254780465|r 382 LVDPHTAVGIHAALACRKS-----SSTPMVTLATAHP 413 (469)
Q Consensus 382 iiDPHTAvG~~aa~~~~~~-----~~~p~VvLATAHP 413 (469)
++=.=|-..++||.+.-+. .+..+|++.+-+-
T Consensus 270 l~GiSSGAavaAAl~~A~~~~~~G~~k~iV~i~pd~G 306 (315)
T TIGR01136 270 LVGISSGAAVAAALQVAKRLENKGPGKVIVAILPDTG 306 (315)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
T ss_conf 6621568999999999973224788966999966898
No 54
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic; InterPro: IPR005787 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. This family describes a form of threonine dehydratase, with two copies of the threonine dehydratase C-terminal domain IPR001721 from INTERPRO. Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine.; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process.
Probab=97.47 E-value=0.0075 Score=40.14 Aligned_cols=271 Identities=18% Similarity=0.239 Sum_probs=163.3
Q ss_pred CCCCEEE-------ECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 6786047-------72488254662138981206823888999999997--31798207997166540467999861667
Q gi|254780465|r 86 AAVTPLI-------QLNANEFLLELFHGPTLSFKDIAMQFIAELMDHIL--EERDHYITIVGATSGDTGAAAIKAFAGKK 156 (469)
Q Consensus 86 ~~~~pl~-------~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l--~~~~~~~~il~ATSGDTGsAa~~a~~~~~ 156 (469)
.-++||. +|+++.|+=-=-.=|-.|||=.|+ ++... ..+.+--=|++|+-|+=..=++=+-+ +=
T Consensus 17 A~eTPL~~a~~LS~RL~N~vl~KRED~QPVfSFKLRGA------YnkMa~Ls~E~~A~GVIaASAGNHAQGVAlsa~-~L 89 (508)
T TIGR01124 17 AVETPLEKAAKLSERLGNRVLLKREDLQPVFSFKLRGA------YNKMAQLSAEQRARGVIAASAGNHAQGVALSAE-KL 89 (508)
T ss_pred EECCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHH------HHHHHCCCHHHHCCCEEECCCCCHHHHHHHHHH-HC
T ss_conf 44185177888688847717998637798410116789------986514887584182012024545789987663-17
Q ss_pred CCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHH
Q ss_conf 8559997357767603321311344787089971796588899999975015431358311345565-444011055899
Q gi|254780465|r 157 RINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYF 235 (469)
Q Consensus 157 ~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf 235 (469)
+++.+|-=|.. +|-=+-+-.-..|- .++===-||||+..-.+++-..+ +||=+-=-| .-=|-+|=.
T Consensus 90 G~~A~IVMP~t--TP~IKV~AVk~~Gg--eVvLhG~~y~~A~~~A~eL~q~~------GlTfi~PFDdPlVIAGQGT--- 156 (508)
T TIGR01124 90 GLKAVIVMPET--TPDIKVDAVKAFGG--EVVLHGDNYDDAKDHAIELAQEK------GLTFIHPFDDPLVIAGQGT--- 156 (508)
T ss_pred CCCEEEECCCC--CCCCCHHHEECCCC--EEEEECCCHHHHHHHHHHHHHHC------CCEEECCCCCCCEECCCHH---
T ss_conf 97269878888--82200120312698--79973798579999999999736------8865278888640325106---
Q ss_pred HHHHHHCCCCC-CE-EEEEECCCHHHHHH-HHHHHHCCCCCCEEE-EECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCC
Q ss_conf 99987447788-73-89963465788788-667775089877058-7236763356775322201023455656420013
Q gi|254780465|r 236 VSSIALGSPNR-NI-SFSVPTGNFGDIFA-GYMAKMMGLPIEKLI-IATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQ 311 (469)
Q Consensus 236 ~a~~~~~~~~~-~i-~f~VPtGNfGni~A-g~~Ak~MGLPI~kli-~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~ 311 (469)
-.+++.++.. ++ .+-||.|-=|=|-. +.+-|++==-| |+| |-++.-|.+.+-+..|.--.-+.+ +
T Consensus 157 -~alEil~Q~~~~~davFVpvGGGGLiAGVA~~~K~l~P~I-kvIGVEp~DS~am~~sL~AG~~V~L~~V---------G 225 (508)
T TIGR01124 157 -VALEILRQVAEDLDAVFVPVGGGGLIAGVAALVKQLMPEI-KVIGVEPTDSDAMKQSLEAGERVDLDQV---------G 225 (508)
T ss_pred -HHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCE-EEEEECCCHHHHHHHHHHCCCCCCCCCC---------C
T ss_conf -6687650576847688871177368999999997228961-8997478659999999856881137711---------0
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHH
Q ss_conf 40137889998709708999999875202651055202211000121342138899999999999863959838339999
Q gi|254780465|r 312 IPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGI 391 (469)
Q Consensus 312 v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~ 391 (469)
.- .|+.+|++.=+ -.|.|+.+.+..+ -.||-|||+.+||.+|+++-=|+.|-.|-|+
T Consensus 226 lF------------aDGVAVk~vG~-----~TF~LC~~YvDd~------v~VdtD~vCaAiKD~F~dtRav~EPaGALal 282 (508)
T TIGR01124 226 LF------------ADGVAVKEVGD-----ETFRLCQQYVDDI------VRVDTDEVCAAIKDLFEDTRAVLEPAGALAL 282 (508)
T ss_pred EE------------ECCEEEHHHHH-----HHHHHHHHHCCCE------EEECCHHHHHHHHHHHHCHHHHCCHHHHHHH
T ss_conf 34------------26735400434-----4589999744554------8626445544555332221221050267899
Q ss_pred HHHHHHHHCC---CCCEEEEEC
Q ss_conf 9999987479---983999971
Q gi|254780465|r 392 HAALACRKSS---STPMVTLAT 410 (469)
Q Consensus 392 ~aa~~~~~~~---~~p~VvLAT 410 (469)
+++++|-... +...|.+.+
T Consensus 283 AGLK~Yva~~g~~~~~Lvai~s 304 (508)
T TIGR01124 283 AGLKKYVAKHGIEGQTLVAITS 304 (508)
T ss_pred HHHHHHHHHCCCCCCEEEEEEC
T ss_conf 9999999954899864688713
No 55
>TIGR01138 cysM cysteine synthase B; InterPro: IPR005858 Cysteine synthase B (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysM differs from CysK (IPR005859 from INTERPRO) in that it can also use thiosulphate instead of sulphide, to produce cysteine thiosulphonate instead of cysteine. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=97.13 E-value=0.0032 Score=42.66 Aligned_cols=235 Identities=21% Similarity=0.230 Sum_probs=136.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECC
Q ss_conf 389812068238889999999973179--820799716654046799986166785599973577676033213113447
Q gi|254780465|r 105 HGPTLSFKDIAMQFIAELMDHILEERD--HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEA 182 (469)
Q Consensus 105 HGPT~aFKD~a~q~l~~~~~~~l~~~~--~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~ 182 (469)
..|.+|-||.++-= ++-.++++.. .--+++-||||+||-|-+=.-+ .+++++-.+-|.+ +|+-.++-|+...+
T Consensus 35 ~NPaGSVKDRpALS---M~~~A~~RG~Ik~G~vlI~ATSGNTGIALAM~aA-~~G~~~~L~MP~N-~s~ERk~~~~AyGA 109 (300)
T TIGR01138 35 NNPAGSVKDRPALS---MILDAEKRGEIKPGDVLIEATSGNTGIALAMVAA-LKGYKMELLMPDN-VSEERKAAMKAYGA 109 (300)
T ss_pred CCCCCCCCHHHHHH---HHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHH-HCCCEEEEECCCC-CHHHHHHHHHHCCC
T ss_conf 59998743157899---9998985588568887897168867899999998-5594289977877-45799999986295
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCC-C-CCCCCCCHHHCCCCHHHHHHHHHHH-CCCCCCEE-EEEECCCHH
Q ss_conf 870899717965888999999750154313583-1-1345565444011055899999874-47788738-996346578
Q gi|254780465|r 183 SNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVN-L-SGINSINWARIMAQIVYYFVSSIAL-GSPNRNIS-FSVPTGNFG 258 (469)
Q Consensus 183 ~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~-l-~s~NSIN~~Ril~Q~vyYf~a~~~~-~~~~~~i~-f~VPtGNfG 258 (469)
+=+.+-..+|. |.+..+|.++-+.-. .++- | -=.|.-|| ..||...-.++ .+-+..|. |+---|.-|
T Consensus 110 ~L~L~~~~~G~-~GA~~l~~~l~~~~~--~Kyv~LDQf~Np~Np------~AHy~sTG~EIW~QT~G~ITHFVss~GT~G 180 (300)
T TIGR01138 110 ELILVDKEEGM-EGARDLARELVQKGE--GKYVLLDQFNNPDNP------KAHYYSTGPEIWQQTGGRITHFVSSMGTTG 180 (300)
T ss_pred EEEEECCCCCC-HHHHHHHHHHHHHCC--CCEEEEEECCCCCCC------CCCEEECCCHHEECCCCEEEEEEECCCCCC
T ss_conf 48984423561-568999999997379--856997405698886------455331680000058972889872368884
Q ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHH-HHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 878866777508987705872367633567753222010234556564200134013-7889998709708999999875
Q gi|254780465|r 259 DIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSN-FERLLFEISGRNSLLVKEAFYS 337 (469)
Q Consensus 259 ni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SN-fERllf~l~~~d~~~v~~~m~~ 337 (469)
-|+. +.|. ++ .|.+.-.+-=+-|.- +|. .|
T Consensus 181 TI~G--~sR~---------------------lk--~~~~~v~ivGlQP~~----g~~GI~-------------------- 211 (300)
T TIGR01138 181 TIMG--VSRY---------------------LK--EQNPNVQIVGLQPAE----GSAGIP-------------------- 211 (300)
T ss_pred EEEC--CEEE---------------------EE--ECCCCEEEEEECCCC----CCCCCC--------------------
T ss_conf 1431--0323---------------------32--218852699712788----766776--------------------
Q ss_pred HCCCCCCCCCCHHHHHHHCCCCCC------CCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHH---CCCCCEEEE
Q ss_conf 202651055202211000121342------13889999999999986395983833999999999874---799839999
Q gi|254780465|r 338 LENKKYFRIDSEHLQKMSLSFSAK------RASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK---SSSTPMVTL 408 (469)
Q Consensus 338 l~~~g~~~i~~~~l~~l~~~f~s~------svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~---~~~~p~VvL 408 (469)
|-=.++.+.+ -..|++. .+..+|-.+++|++-.+.++++=--+.-++.+..+.-+ +.+...|++
T Consensus 212 ----G~~~~~~~~~---P~Ifd~~~~D~~~~~~~~dA~~~~R~LA~~~~IF~G~SSG~A~~a~l~lar~~~~kGekaV~V 284 (300)
T TIGR01138 212 ----GIRRWPSEYL---PGIFDASLVDRVIDVHQEDAEDIMRELAKKEGIFCGVSSGGAVAAALRLARELAKKGEKAVIV 284 (300)
T ss_pred ----CCCCCCHHCC---CCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf ----3211610138---852241010203551116689999998764765874071899999999988643048833899
Q ss_pred E
Q ss_conf 7
Q gi|254780465|r 409 A 409 (469)
Q Consensus 409 A 409 (469)
+
T Consensus 285 a 285 (300)
T TIGR01138 285 A 285 (300)
T ss_pred E
T ss_conf 9
No 56
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=96.75 E-value=0.062 Score=33.76 Aligned_cols=275 Identities=12% Similarity=0.074 Sum_probs=126.7
Q ss_pred CCCEEEECCC---------CCEEEE--ECCCC-CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCC
Q ss_conf 7860477248---------825466--21389-81206823888999999997317982079971665404679998616
Q gi|254780465|r 87 AVTPLIQLNA---------NEFLLE--LFHGP-TLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAG 154 (469)
Q Consensus 87 ~~~pl~~l~~---------~~~vlE--LfHGP-T~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~ 154 (469)
.++||.++.+ ++||-- |-||- ..-=|-+-+ -.++..++++..+.++-.++.-..-.-|.+.|.+
T Consensus 14 ~PTPl~~l~rLs~~lg~~v~l~iKRDDl~~gl~~gGNK~RKL---ey~l~~A~~~g~d~lvT~Gg~qSNH~ratAaAaa- 89 (337)
T PRK12390 14 GPTPIQPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKL---EYLIPDALAQGADTLVSIGGVQSNQTRQVAAVAA- 89 (337)
T ss_pred CCCCCEEHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHH---HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHH-
T ss_conf 998453567789984998459997257877655553238889---9999999986999999899985569999999999-
Q ss_pred CCCCEEEEECCCCCCC---HHH----HCCCEEECCCCEEEEEECCCHH-HHHHHHHHHHCC--HHHHCCCCCCCCCCCCH
Q ss_conf 6785599973577676---033----2131134478708997179658-889999997501--54313583113455654
Q gi|254780465|r 155 KKRINMYILFPEGRIS---VVQ----QKQMTTSEASNINVIAVQSSFD-DCQKIVKNLFSD--VFFCHSVNLSGINSINW 224 (469)
Q Consensus 155 ~~~i~v~vlyP~g~vS---~~Q----~~qmtt~~~~Nv~~i~v~G~FD-Dcq~~Vk~~f~D--~~~~~~~~l~s~NSIN~ 224 (469)
+-+++++++. .+.+. +.. -.++....|-+|+.+ +..+| +.+....+++.+ ....+-+.+-..-|-|.
T Consensus 90 ~~Gl~~~lv~-~~~~~~~~~~~~~~gN~ll~~l~Ga~i~~~--~~~~~~~~~~~~~~~~~~l~~~g~~pY~IP~Ggs~~~ 166 (337)
T PRK12390 90 HLGMKCVLVQ-ENWVNYEDAVYDRVGNIQMSRIMGADVRLV--PDGFDIGIRKSWEDALEDVRAAGGKPYPIPAGCSEHP 166 (337)
T ss_pred HHCCEEEEEE-CCCCCCCCHHHHHHHHHHHHHHCCCEEEEE--CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 8299079995-466787525555131299999729868997--1786555789999999999961896579356888877
Q ss_pred HHCCCCHHHHHHHHHHHCCCCCC-EEEEEECCCHHHHHHHHHH--HHCCCCCCEEE-E-ECCCCCHHHHHHHCCCHHCCC
Q ss_conf 44011055899999874477887-3899634657887886677--75089877058-7-236763356775322201023
Q gi|254780465|r 225 ARIMAQIVYYFVSSIALGSPNRN-ISFSVPTGNFGDIFAGYMA--KMMGLPIEKLI-I-ATNENDTLVRMFDMGMYRPEI 299 (469)
Q Consensus 225 ~Ril~Q~vyYf~a~~~~~~~~~~-i~f~VPtGNfGni~Ag~~A--k~MGLPI~kli-~-AtN~NdiL~rf~~tG~y~~~~ 299 (469)
...++-+-.+.....|....+.. -.+++|+|.-|. .||+++ +..|.+. ++| + +......+..-+.
T Consensus 167 lg~lGy~~~~~El~~Q~~~~~~~~D~iv~~~GsGgT-~AGL~~G~~~~~~~~-~viGi~v~~~~~~~~~~v~-------- 236 (337)
T PRK12390 167 LGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGST-QAGMVVGFAADGRAD-RVIGIDASAKPEQTREQIL-------- 236 (337)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHH-HHHHHHHHHHHCCCC-EEEEEEECCCHHHHHHHHH--------
T ss_conf 542589989999999999729998959995388750-899977788609996-1799861463788999999--------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHC--CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 455656420013401378899987097089999998752026510552022110001--213421388999999999998
Q gi|254780465|r 300 VMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSL--SFSAKRASMEDVNSVIKSVLE 377 (469)
Q Consensus 300 ~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~--~f~s~svsDeet~~~Ik~~y~ 377 (469)
++. .+.- +++ .. ...+..+.+. +.. ...++-+.+++.++.|+.+..
T Consensus 237 ---~l~--------~~~~---------------~~~---~~--~~~~~~~~i~-~~~~y~G~gYg~~~~~~~eai~~~a~ 284 (337)
T PRK12390 237 ---RIA--------RHTA---------------ELV---EL--GRDITDDDVV-LDERYAGPEYGLPNEGTLEAIRLCAR 284 (337)
T ss_pred ---HHH--------HHHH---------------HHH---CC--CCCCCHHHEE-EECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf ---999--------9999---------------871---68--9999878836-61045688478789999999999999
Q ss_pred HCCCEECC-CHHHHHHHHHHHHHC----CCCCEEEEEC
Q ss_conf 63959838-339999999998747----9983999971
Q gi|254780465|r 378 KSNYLVDP-HTAVGIHAALACRKS----SSTPMVTLAT 410 (469)
Q Consensus 378 ~~gyiiDP-HTAvG~~aa~~~~~~----~~~p~VvLAT 410 (469)
++|+++|| -|+=++.+...+-++ .+.++|.+=|
T Consensus 285 ~eGI~LDPVYTgKa~~GL~~~i~~g~~~~g~~VlfiHT 322 (337)
T PRK12390 285 LEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAHL 322 (337)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 74952362378999999999997699899990899989
No 57
>TIGR01139 cysK cysteine synthase A; InterPro: IPR005859 This model discriminates cysteine synthase A (CysK) and cysteine synthase B (CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblance to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded. Cysteine synthase (O-acetylserine (thiol)-lyase, 2.5.1.47 from EC) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid. In bacteria such two forms of the enzyme are known (genes cysK and cysM). CysK differs from CysM in that it can also use sulphide instead of thiosulphate, to produce cysteine instead of cysteine thiosulphonate. ; GO: 0004124 cysteine synthase activity, 0006535 cysteine biosynthetic process from serine.
Probab=96.03 E-value=0.16 Score=30.93 Aligned_cols=265 Identities=21% Similarity=0.273 Sum_probs=164.5
Q ss_pred CCEEEECCC--------CCEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 860477248--------8254662-138981206823888999999997317--98207997166540467999861667
Q gi|254780465|r 88 VTPLIQLNA--------NEFLLEL-FHGPTLSFKDIAMQFIAELMDHILEER--DHYITIVGATSGDTGAAAIKAFAGKK 156 (469)
Q Consensus 88 ~~pl~~l~~--------~~~vlEL-fHGPT~aFKD~a~q~l~~~~~~~l~~~--~~~~~il~ATSGDTGsAa~~a~~~~~ 156 (469)
-+||++|++ +.|+ =| |..|-.|=||... ..|...+-++. ++-.+|+=||||+||-|-|.-++.+-
T Consensus 7 ~TPlVrLnRrl~~~~~~~v~~-KlE~~NPs~SVKDRia---~~MI~~AEk~G~lk~G~~IvEpTSGNTGIaLAmvAAArG 82 (312)
T TIGR01139 7 NTPLVRLNRRLAEGNNADVFV-KLEFFNPSGSVKDRIA---LNMIEDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARG 82 (312)
T ss_pred CCCEEECCCCCCCCCCCEEEE-EEECCCCCCCHHHHHH---HHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHC
T ss_conf 987066165446887633899-9604598986777889---999999986588688888982377732699999998718
Q ss_pred CCEEEEECCCCCCCHHHHCCCEEECCCCEE---EEEECCCHHHHHHHHHHHHCCHHHHCCCCCCC--CCCCCHHHCCCCH
Q ss_conf 855999735776760332131134478708---99717965888999999750154313583113--4556544401105
Q gi|254780465|r 157 RINMYILFPEGRISVVQQKQMTTSEASNIN---VIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSG--INSINWARIMAQI 231 (469)
Q Consensus 157 ~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~---~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s--~NSIN~~Ril~Q~ 231 (469)
-++++-=|+- .|.--|+-|.....+=|. .-++.|.-+-++.|+.+.= +.+-+-. -|--|. -
T Consensus 83 -YkliltMPet-MS~ERr~lL~ayGAeLvLTpg~~GMkGAI~KA~Ei~~~~P------n~y~m~~QF~NpANP------~ 148 (312)
T TIGR01139 83 -YKLILTMPET-MSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAESTP------NSYFMLQQFENPANP------E 148 (312)
T ss_pred -CEEEEECCCC-HHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCC------CCEEECCCCCCCCHH------H
T ss_conf -9499986743-2689999998709658872812376667899999998687------926522457872214------7
Q ss_pred HHHHHHHHHHC-CCCCC--EE-EEEECCCHHHHHH-HHHHHHCCCC----CCEEEEECCCCC--HHHHHHHCCCHHCCC-
Q ss_conf 58999998744-77887--38-9963465788788-6677750898----770587236763--356775322201023-
Q gi|254780465|r 232 VYYFVSSIALG-SPNRN--IS-FSVPTGNFGDIFA-GYMAKMMGLP----IEKLIIATNEND--TLVRMFDMGMYRPEI- 299 (469)
Q Consensus 232 vyYf~a~~~~~-~~~~~--i~-f~VPtGNfGni~A-g~~Ak~MGLP----I~kli~AtN~Nd--iL~rf~~tG~y~~~~- 299 (469)
+|+.....++- +-+.. |+ |+==+|-=|=|+. |=+-| -=.| | + ++|+-.-+ +|...+..-.-+|.+
T Consensus 149 ~Hr~TTg~EIw~d~dg~G~~D~FVaG~GTGGTITGvG~~LK-~~~pkG~~~-~-~~AVEP~~SPVLSggLAG~~ikpGpH 225 (312)
T TIGR01139 149 IHRKTTGPEIWRDTDGKGRLDAFVAGVGTGGTITGVGEVLK-EKKPKGKDI-K-IVAVEPAESPVLSGGLAGEEIKPGPH 225 (312)
T ss_pred HHHHCCHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHH-CCCCCCCEE-E-EEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 61620278999962789831179973236851547899874-007899558-9-99872774313443330010266949
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 45565642001340137889998709708999999875202651055202211000121342138899999999999863
Q gi|254780465|r 300 VMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKS 379 (469)
Q Consensus 300 ~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~ 379 (469)
-.+=+.|=- +|.|+.|-++|- =-.|+|||-..+=|++-++.
T Consensus 226 KIQGiGAGF---IP~~Ln~~v~D~------------------------------------vi~V~~EeAi~~ARrLA~eE 266 (312)
T TIGR01139 226 KIQGIGAGF---IPKVLNRSVIDE------------------------------------VITVSDEEAIETARRLAKEE 266 (312)
T ss_pred CCCCCCCCC---CCCCCCCCCCCE------------------------------------EEECCCHHHHHHHHHHHHHC
T ss_conf 641279787---263368413621------------------------------------47407556899999999867
Q ss_pred CCEECCCHHHHHHHHHHHHH--C-CCCCEEEEECCC
Q ss_conf 95983833999999999874--7-998399997188
Q gi|254780465|r 380 NYLVDPHTAVGIHAALACRK--S-SSTPMVTLATAH 412 (469)
Q Consensus 380 gyiiDPHTAvG~~aa~~~~~--~-~~~p~VvLATAH 412 (469)
|.+.=.=+-..+.||.+.-+ . ++..+|++..-+
T Consensus 267 GiL~GISSGA~vaAAl~~Ak~~~n~dK~iV~i~Ps~ 302 (312)
T TIGR01139 267 GILVGISSGAAVAAALKLAKRLENPDKLIVVILPST 302 (312)
T ss_pred CEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 801015578999999999873248898899982789
No 58
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=95.93 E-value=0.17 Score=30.66 Aligned_cols=328 Identities=15% Similarity=0.091 Sum_probs=159.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHH-----HHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEC----
Q ss_conf 787863286107888988998-----77099989999999987515789989999999998630476678604772----
Q gi|254780465|r 24 ATDGGLYIPKYIPRLSEKEIK-----DLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQL---- 94 (469)
Q Consensus 24 a~DGGL~vP~~~p~~~~~~~~-----~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l---- 94 (469)
..-||-||||.+-. ..++|. -+.+..|.+--...++.|++- +.||...
T Consensus 13 G~fGG~~vpe~L~~-~l~el~~~~~~~~~d~~F~~e~~~~l~~y~GR----------------------PTPL~~A~~Ls 69 (392)
T PRK04346 13 GEFGGRFVPETLMP-ALEELEEAYEKAKNDPEFQAELDYLLKNYVGR----------------------PTPLYFAERLS 69 (392)
T ss_pred CCCCCEECCHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----------------------CCCHHHHHHHH
T ss_conf 78389858798999-99999999999865989999999999861899----------------------97105377667
Q ss_pred ----CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf ----4882546621389812068238889999999973179820799716-65404679998616678559997357767
Q gi|254780465|r 95 ----NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGAT-SGDTGAAAIKAFAGKKRINMYILFPEGRI 169 (469)
Q Consensus 95 ----~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g~v 169 (469)
+.+.|+=-=---||+|+|.--.- ++. ++.++.+++. |++-| .|--|+|.+-+++ .=++++.|+-....+
T Consensus 70 ~~lggakIylKrEdlnhtGsHKiNnal--gQa--llAkrmGkkr-iiaETGAGQhG~A~A~a~A-~~Gl~c~VyMg~~D~ 143 (392)
T PRK04346 70 EHLGGAKIYLKREDLNHTGAHKINNAL--GQA--LLAKRMGKKR-IIAETGAGQHGVATATAAA-LFGLECVVYMGAEDV 143 (392)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCHHHH--HHH--HHHHHHCCCE-EEECCCCHHHHHHHHHHHH-HCCCCEEEEEECCCC
T ss_conf 761787688863267877654301069--999--9999808833-5404462066789999999-809963899715655
Q ss_pred CHHHHC---CCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHH---CCCCCCCCCCCCHHHCC---CCHHHHHHHHHH
Q ss_conf 603321---311344787089971796588899999975015431---35831134556544401---105589999987
Q gi|254780465|r 170 SVVQQK---QMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFC---HSVNLSGINSINWARIM---AQIVYYFVSSIA 240 (469)
Q Consensus 170 S~~Q~~---qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~---~~~~l~s~NSIN~~Ril---~Q~vyYf~a~~~ 240 (469)
. .|+. -|-.. |-.| ++|+..---....|.+++.|+--. ..+-++|+-.-.+...| -|.|---.+-.|
T Consensus 144 ~-rQ~~NV~rM~ll-GA~V--vpv~sGs~tLkdAi~EA~r~wv~~~~~t~Y~iGSv~gPHP~P~~Vr~fQsvIG~E~k~Q 219 (392)
T PRK04346 144 E-RQALNVFRMKLL-GAEV--VPVTSGSRTLKDAVNEALRDWVTNVEDTHYIIGSVAGPHPYPTMVRDFQSVIGEEAKAQ 219 (392)
T ss_pred C-CCCHHHHHHHHC-CCEE--EEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 3-135238999986-9859--98278770389999999999984877728951675789833889998999854999999
Q ss_pred HC-CCCCCEEE-EEECC---CHHHHHHHHHHHHCCCCCCEEE--------------EECCCC---CHHHHHHHCCCH--H
Q ss_conf 44-77887389-96346---5788788667775089877058--------------723676---335677532220--1
Q gi|254780465|r 241 LG-SPNRNISF-SVPTG---NFGDIFAGYMAKMMGLPIEKLI--------------IATNEN---DTLVRMFDMGMY--R 296 (469)
Q Consensus 241 ~~-~~~~~i~f-~VPtG---NfGni~Ag~~Ak~MGLPI~kli--------------~AtN~N---diL~rf~~tG~y--~ 296 (469)
+. ..++-.+. +-..| ||.-++..|+..+ .+ +|| +|+=.. .+||-+.+ =.. +
T Consensus 220 ~~e~~G~~PD~vvaCVGGGSNa~G~f~pFl~d~---~v-~ligVEa~G~g~~~g~haa~lt~G~~GvlhG~~t-y~Lqd~ 294 (392)
T PRK04346 220 ILEKEGRLPDAVVACVGGGSNAIGIFHPFIDDP---SV-RLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKT-YLLQDE 294 (392)
T ss_pred HHHHHCCCCCEEEECCCCCCHHHHHHCCCCCCC---CE-EEEEEECCCCCCCCCCCCCCCCCCCEEEECCCHH-EEECCC
T ss_conf 999738999999987787611665321013687---51-5999853667777654333125897424415012-242378
Q ss_pred CCCCCCCCC--CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 023455656--420013401378899987097089999998752026510552022110001213421388999999999
Q gi|254780465|r 297 PEIVMETTS--PAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKS 374 (469)
Q Consensus 297 ~~~~~~T~S--psMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~ 374 (469)
-....+|.| .-+|-. +-+..++.+.+ .| .....+++|+|.++.-+.
T Consensus 295 ~Gqi~~~hSisAGLdYp--------------GvgPehs~L~~----~g--------------r~~y~~~td~Eal~A~~~ 342 (392)
T PRK04346 295 DGQIEETHSISAGLDYP--------------GVGPEHAYLKD----IG--------------RAEYVSITDDEALEAFQL 342 (392)
T ss_pred CCCCCCCCCCCCCCCCC--------------CCCHHHHHHHH----CC--------------CEEEEECCHHHHHHHHHH
T ss_conf 98857987655687878--------------86889999987----59--------------727997388999999999
Q ss_pred HHHHCCCEECCCHHHHHHHHHHHHH--CCCCCEEEEECCCCCCCHHHHH
Q ss_conf 9986395983833999999999874--7998399997188434988899
Q gi|254780465|r 375 VLEKSNYLVDPHTAVGIHAALACRK--SSSTPMVTLATAHPSKFPDTVK 421 (469)
Q Consensus 375 ~y~~~gyiiDPHTAvG~~aa~~~~~--~~~~p~VvLATAHPaKFpe~V~ 421 (469)
+-+..|++--|-||-+++.+.+.-. ..+..+|+--+-|--|--++|.
T Consensus 343 lar~EGIiPAlEssHAva~aik~A~~~~~~~~IvvnlSGrGdkD~~~va 391 (392)
T PRK04346 343 LSRLEGIIPALESSHALAYALKLAPTLPKDQIIVVNLSGRGDKDVFTVA 391 (392)
T ss_pred HHHCCCCEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHH
T ss_conf 9980597556607999999999887649998899984788601198873
No 59
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=94.59 E-value=0.45 Score=27.82 Aligned_cols=315 Identities=16% Similarity=0.102 Sum_probs=162.5
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEEC-------C--CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 89989999999998630476678604772-------4--88254662138981206823888999999997317982079
Q gi|254780465|r 66 EIKSSKLRDIVNRSYHCFRNAAVTPLIQL-------N--ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITI 136 (469)
Q Consensus 66 ~i~~~~l~~ii~~ay~~f~~~~~~pl~~l-------~--~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~i 136 (469)
+||++.+ +.|.-.+ +.||.+- + ...|+=-=---||+|+|=--. +++. ++.++.+++. |
T Consensus 55 ~iPe~v~-----~~y~~gR---PTPL~~A~~L~k~lgt~AkIYlKrEdl~htGsHKiNna--i~Qa--llaK~mGkkr-i 121 (419)
T PRK12391 55 DIPEEVR-----EIYRLWR---PTPLIRARRLEKALGTPAKIYYKYEGVSPAGSHKPNTA--VAQA--YYNKKEGIKR-L 121 (419)
T ss_pred CCCHHHH-----HHHHCCC---CCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHH--HHHH--HHHHHCCCCE-E
T ss_conf 6978999-----9986379---96668888899975999679997567787777641219--9999--9999819957-9
Q ss_pred EECC-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC----CCEEECCCCEEEEE---EC-CC--HHH-------HH
Q ss_conf 9716-65404679998616678559997357767603321----31134478708997---17-96--588-------89
Q gi|254780465|r 137 VGAT-SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK----QMTTSEASNINVIA---VQ-SS--FDD-------CQ 198 (469)
Q Consensus 137 l~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~----qmtt~~~~Nv~~i~---v~-G~--FDD-------cq 198 (469)
++-| .|--|+|.+-|++- =++++.|+- +++|--|+. .|-.. |-.|++.. ++ |. -.| .-
T Consensus 122 iaETGAGQhG~A~A~a~A~-fGlec~VyM--~~~d~~~kp~~v~~M~~~-GA~VvpspS~~t~~G~~~Lkd~p~~~GSLg 197 (419)
T PRK12391 122 TTETGAGQWGSALALACAL-FGLECTVFM--VRVSYEQKPYRRSLMETY-GAEVIPSPSELTEAGRKILAEDPDHPGSLG 197 (419)
T ss_pred EECCCCCHHHHHHHHHHHH-HCCCEEEEE--EHHHHHHCHHHHHHHHHC-CCEEEECCCCCCCHHHHHHHHCCCCCCCHH
T ss_conf 8635753677999999998-499629997--100043151779999976-988994687653010677742888887078
Q ss_pred HHHHHHHCCHH--HHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEE-ECC---CHHHHHHHHHHHH-CCC
Q ss_conf 99999750154--3135831134556544401105589999987447788738996-346---5788788667775-089
Q gi|254780465|r 199 KIVKNLFSDVF--FCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSV-PTG---NFGDIFAGYMAKM-MGL 271 (469)
Q Consensus 199 ~~Vk~~f~D~~--~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~V-PtG---NfGni~Ag~~Ak~-MGL 271 (469)
..|.+++.|.- -..++.|+|+= |-.| +-|.|---.+..|+...++..+.+| ..| ||+-++..|+.-+ -|-
T Consensus 198 ~AisEAi~~~~~~~~t~Y~lGSv~--~hV~-~fQsVIG~Eak~Qle~~G~~PD~viaCVGGGSNa~G~f~pFi~dk~~g~ 274 (419)
T PRK12391 198 IAISEAVEDALSHEDTKYALGSVL--NHVL-LHQTVIGLEAKKQLEMAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLRGK 274 (419)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCC--CHHH-HHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 889999999980998369843465--1336-7888968999999997189969999887753666655305455443378
Q ss_pred CCCEEEEECCCCCHHHHHHHCCCHHC--CCC------CCCCCCCCCCCCHHHHH-HHHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 87705872367633567753222010--234------55656420013401378-8999870970899999987520265
Q gi|254780465|r 272 PIEKLIIATNENDTLVRMFDMGMYRP--EIV------METTSPAMDIQIPSNFE-RLLFEISGRNSLLVKEAFYSLENKK 342 (469)
Q Consensus 272 PI~kli~AtN~NdiL~rf~~tG~y~~--~~~------~~T~SpsMDI~v~SNfE-Rllf~l~~~d~~~v~~~m~~l~~~g 342 (469)
+=-++|...-.-- --+..|.|.- ..+ .++.+=--|.+.|..-- -|- |-+-+..++.+.+ .|
T Consensus 275 ~~v~ligVEa~~~---p~lt~G~~~y~~gd~~g~~p~~k~ytlg~~~~p~~~haaGLd---YpGvgP~~s~L~~----~G 344 (419)
T PRK12391 275 KKVRFIAVEPAAC---PTLTRGEYAYDFGDTAGLTPLLKMYTLGHDFVPPPIHAGGLR---YHGMAPLVSLLVH----LG 344 (419)
T ss_pred CCEEEEEECCCCC---CCCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHCC---CCCCCHHHHHHHH----CC
T ss_conf 7617998767777---512587334421764462113246760677655642121104---7898879999986----69
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH----HHCCCCC-EEEEECCCCCCCH
Q ss_conf 1055202211000121342138899999999999863959838339999999998----7479983-9999718843498
Q gi|254780465|r 343 YFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALAC----RKSSSTP-MVTLATAHPSKFP 417 (469)
Q Consensus 343 ~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~----~~~~~~p-~VvLATAHPaKFp 417 (469)
.....+++|+|.++.-+.+-...|++--|-|+=+++++.+. +..+... +|+--+-|--|--
T Consensus 345 --------------rve~~a~td~EaleA~~~lar~EGIiPAlESsHAia~ai~~A~~~k~~~~~~~IlvnlSGrGdkDl 410 (419)
T PRK12391 345 --------------LIEAVAYDQEEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILFNLSGHGLLDL 410 (419)
T ss_pred --------------CEEEEECCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHH
T ss_conf --------------459996588999999999998258652462587999999998857303899889998888845329
Q ss_pred HHHHHHH
Q ss_conf 8899980
Q gi|254780465|r 418 DTVKAAS 424 (469)
Q Consensus 418 e~V~~Ai 424 (469)
.++.+.+
T Consensus 411 ~~y~~yl 417 (419)
T PRK12391 411 AAYDDYL 417 (419)
T ss_pred HHHHHHH
T ss_conf 9999985
No 60
>COG5598 Trimethylamine:corrinoid methyltransferase [Coenzyme metabolism]
Probab=91.05 E-value=0.83 Score=25.95 Aligned_cols=193 Identities=17% Similarity=0.127 Sum_probs=109.3
Q ss_pred CCCEEEE-EECCCHHHHHHHHHHHHC-CHHHHCCCCCCCCCCCCHHHCC----CC-------------------------
Q ss_conf 7870899-717965888999999750-1543135831134556544401----10-------------------------
Q gi|254780465|r 182 ASNINVI-AVQSSFDDCQKIVKNLFS-DVFFCHSVNLSGINSINWARIM----AQ------------------------- 230 (469)
Q Consensus 182 ~~Nv~~i-~v~G~FDDcq~~Vk~~f~-D~~~~~~~~l~s~NSIN~~Ril----~Q------------------------- 230 (469)
.+-.|.. ...+.-.||-.+++-++. +++++.+-.++..++.|.-+.. .|
T Consensus 205 dK~f~~s~~~~eraed~iem~~i~~G~ee~~r~~p~~~~iin~nsPl~fde~m~~~l~~~ar~gq~v~vtpf~l~GAmsP 284 (526)
T COG5598 205 DKHFMGSATGPERAEDGIEMARIARGGEEEVRANPVVSTIINANSPLVFDETMCQGLIAYARHGQPVVVTPFALAGAMSP 284 (526)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHHHCCHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEECHHHHCCCCCC
T ss_conf 77733421684125779999999827577760497687631478863104778999999985598179601555178774
Q ss_pred ---------HHHHH---HHHHHHCCCCCCEEE-------EEECC---------CHHHHHHHHHHHHCCCCCC--EEEEEC
Q ss_conf ---------55899---999874477887389-------96346---------5788788667775089877--058723
Q gi|254780465|r 231 ---------IVYYF---VSSIALGSPNRNISF-------SVPTG---------NFGDIFAGYMAKMMGLPIE--KLIIAT 280 (469)
Q Consensus 231 ---------~vyYf---~a~~~~~~~~~~i~f-------~VPtG---------NfGni~Ag~~Ak~MGLPI~--kli~At 280 (469)
..--. -++.|+.+++.|+.| ..-|| ...++.+|-+|++.|||-. .-++++
T Consensus 285 vt~AGal~Q~~AE~LaGvalaQlvrPGaPv~yG~f~s~~DmksGap~fGtPE~a~~~~~~gQLArrygLP~rtag~~~~s 364 (526)
T COG5598 285 VTLAGALVQQNAEVLAGVALAQLVRPGAPVVYGTFTSNVDMKSGAPAFGTPEPALASAGAGQLARRYGLPYRTAGGGSAA 364 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 13788999999999975899986078985265046543133458888898389999999999999849986446786434
Q ss_pred CCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCC
Q ss_conf 67633567753222010234556564200134013788999870970899999987520265105520221100012134
Q gi|254780465|r 281 NENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360 (469)
Q Consensus 281 N~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s 360 (469)
|.+|.=.- |+. ..+--|-++---|| +|+.-|--..-+.--| .++-++.+.+..+++...+
T Consensus 365 k~pDaQAg------~E~-----~~t~~~a~LaGaN~---v~haAGwleggL~~s~------Ekli~D~d~l~~~~~~~~g 424 (526)
T COG5598 365 KLPDAQAG------YES-----AMTLWGAVLAGANL---VYHAAGWLEGGLTFSY------EKLIIDNDILGMVQKFLRG 424 (526)
T ss_pred CCCCHHHH------HHH-----HHHHHHHHHCCCCE---EEEHHHHHHCCHHHHH------HHHHHHHHHHHHHHHHHCC
T ss_conf 68515667------899-----99999988647420---1123466642103439------9887309999999997158
Q ss_pred CCCCHHH-HHHHHHHHHHHCCCEECCCHHHHHHHH
Q ss_conf 2138899-999999999863959838339999999
Q gi|254780465|r 361 KRASMED-VNSVIKSVLEKSNYLVDPHTAVGIHAA 394 (469)
Q Consensus 361 ~svsDee-t~~~Ik~~y~~~gyiiDPHTAvG~~aa 394 (469)
-.+||+. -.++|+++=-..+|+-+|||=--+.-+
T Consensus 425 i~vse~~la~dai~eV~~ggHflG~~hT~~~~qTa 459 (526)
T COG5598 425 IDVSEEALAFDAIREVGPGGHFLGCPHTLALYQTA 459 (526)
T ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 88870023357997308998625777899998764
No 61
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=90.01 E-value=0.79 Score=26.11 Aligned_cols=76 Identities=12% Similarity=0.080 Sum_probs=48.7
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 3179820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+-++|...|-+|++| -|.|.++.|. ..+-+|++.+....-.+-...++... +..++.+.+| .+.++|+.+|+++..
T Consensus 8 ~L~gKvalVTGas~G-IG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~l~~~-g~~~~~~~~Dv~~~~~~~~~v~~~~~ 84 (255)
T PRK06113 8 RLDGKCAIITGAGAG-IGKEIAITFA-TAGASVVVSDINADAANHVVDEIQQL-GGQAFACRCDITSEQELSALADFAVS 84 (255)
T ss_pred CCCCCEEEEECCCCH-HHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 799998999588778-9999999999-87999999969889999999999965-99089998368999999999999999
No 62
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=89.93 E-value=1.7 Score=23.74 Aligned_cols=335 Identities=18% Similarity=0.133 Sum_probs=164.8
Q ss_pred CCCCCCCCCCCCCCCCHHHH-----HHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE------
Q ss_conf 78786328610788898899-----8770999899999999875157899899999999986304766786047------
Q gi|254780465|r 24 ATDGGLYIPKYIPRLSEKEI-----KDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLI------ 92 (469)
Q Consensus 24 a~DGGL~vP~~~p~~~~~~~-----~~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl~------ 92 (469)
..-||-||||.+-. ..++| .-+.+-.|.+--.+.++.|+|- +.||.
T Consensus 226 g~~gg~~vpe~l~~-~~~~l~~~~~~~~~d~~f~~e~~~~~~~y~gr----------------------ptpl~~a~~l~ 282 (611)
T PRK13803 226 GTFGGCYVPETLMA-PLQELQESMTKIVKSNVFQTTFHRLLQHYAGR----------------------PSPLTEAKRLS 282 (611)
T ss_pred CCCCCEECCHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----------------------CCHHHHHHHCC
T ss_conf 88488858288899-99999999999865999999999999960899----------------------97328877501
Q ss_pred -ECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf -724882546621389812068238889999999973179820799716-654046799986166785599973577676
Q gi|254780465|r 93 -QLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGAT-SGDTGAAAIKAFAGKKRINMYILFPEGRIS 170 (469)
Q Consensus 93 -~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g~vS 170 (469)
.++...|+=-=---+|+|+|=--. +++. +..++.+++. |++-| .|--|+|.+-|++ +=++++.|+--.-.+.
T Consensus 283 ~~~ga~IylKrEdl~htGaHKinna--i~Qa--llak~~Gk~~-ii~ETGAGqhG~a~a~a~a-~~gl~c~v~Mg~~d~~ 356 (611)
T PRK13803 283 DIQGPRIFLKREDLNHTGSHKINNV--LGQA--LLAKKLGKTR-IIAETGAGQHGVATATACA-LFGLRCTIYMGEEDMK 356 (611)
T ss_pred CCCCCEEEEEECCCCCCCCCCHHHH--HHHH--HHHHHCCCCE-EEECCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCC
T ss_conf 3019779996236777776423339--9999--9999749946-8843683376699999999-8599649997655544
Q ss_pred --HHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHH---CCCCCCCCCCCC----HHHCCCCHHHHHHHHHHH
Q ss_conf --03321311344787089971796588899999975015431---358311345565----444011055899999874
Q gi|254780465|r 171 --VVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFC---HSVNLSGINSIN----WARIMAQIVYYFVSSIAL 241 (469)
Q Consensus 171 --~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~---~~~~l~s~NSIN----~~Ril~Q~vyYf~a~~~~ 241 (469)
+...-.|-.. |-. +++|...---....+.+++.|+.-. ..+-++|+=.=. ..| +-|.|---.+-.|+
T Consensus 357 rq~~nv~~m~~~-Ga~--v~~~~~g~~tL~~Ai~eA~r~w~~~~~~t~Y~~GS~~gphp~p~~v~-~~QsvIG~E~~~Q~ 432 (611)
T PRK13803 357 RQAPNVERMKLL-GAN--VIAVLAGSQTLKDAVNEALRDWSASYENTHYCLGSALGPHPFPEMVA-YFQSVIGEEAKTQV 432 (611)
T ss_pred CCCHHHHHHHHC-CCE--EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHH-HHHHHHHHHHHHHH
T ss_conf 576879999987-987--99817998728999999999998397873997156458986569999-89999889999999
Q ss_pred C-CCCCCEEEEE-ECC---CHHHHHHHHHHHH-----------CCCCCCEEEEECC---CCCHHHHHHHCCCH-HCCCCC
Q ss_conf 4-7788738996-346---5788788667775-----------0898770587236---76335677532220-102345
Q gi|254780465|r 242 G-SPNRNISFSV-PTG---NFGDIFAGYMAKM-----------MGLPIEKLIIATN---ENDTLVRMFDMGMY-RPEIVM 301 (469)
Q Consensus 242 ~-~~~~~i~f~V-PtG---NfGni~Ag~~Ak~-----------MGLPI~kli~AtN---~NdiL~rf~~tG~y-~~~~~~ 301 (469)
. ..++..+.+| ..| ||+-++..|+--+ .|+--++ .+|+= .-.+||-+.+--.- +-....
T Consensus 433 ~e~~g~~Pd~vvacvGGGSN~~G~~~pF~~d~~v~ligvEa~g~g~~~~~-~~a~~~~g~~g~~~G~~~~~~~d~~g~~~ 511 (611)
T PRK13803 433 HEQTGKLPDAIIACVGGGSNAIGIFSAFLDDPTVRLIGVEAGGKGNQTGE-HAATIKHGRKGVLHGTYTYLMQDENGQIA 511 (611)
T ss_pred HHHCCCCCCEEEECCCCCHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-EEEECCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 99639998999988886376664205567898337999815788888885-23453899834016842213647885967
Q ss_pred C--CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 5--65642001340137889998709708999999875202651055202211000121342138899999999999863
Q gi|254780465|r 302 E--TTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKS 379 (469)
Q Consensus 302 ~--T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~ 379 (469)
+ |+|.-+|-. +-+..++.|.+ .|. ....+++|+|.++.-+.+-+..
T Consensus 512 ~~~sisaGLdY~--------------gvgP~~s~l~~----~gr--------------~~~~~~~d~ea~~a~~~~~~~E 559 (611)
T PRK13803 512 ETHSISAGLDYP--------------AIGPQHAFLFE----TGR--------------AIYTSVTDKDALTAFKLLAKTE 559 (611)
T ss_pred CCCCCCCCCCCC--------------CCCHHHHHHHH----CCC--------------EEEEECCHHHHHHHHHHHHHHC
T ss_conf 997567788989--------------71899999986----695--------------5999669999999999999836
Q ss_pred CCEECCCHHHHHHHHHH-HH-H-CCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 95983833999999999-87-4-7998399997188434988899980
Q gi|254780465|r 380 NYLVDPHTAVGIHAALA-CR-K-SSSTPMVTLATAHPSKFPDTVKAAS 424 (469)
Q Consensus 380 gyiiDPHTAvG~~aa~~-~~-~-~~~~p~VvLATAHPaKFpe~V~~Ai 424 (469)
|++--|-|+-+++.+.+ .. . ..+..+|+--.-|--|=-++|.+-.
T Consensus 560 GIiPA~Es~HAia~~~~~~~~~~~~~~~i~~nlsGrgdkd~~~~~~~~ 607 (611)
T PRK13803 560 GIIPALESSHAIAYLLKEGRKKFSRKDIVIVNLSGRGDKDIPTLKEYS 607 (611)
T ss_pred CCEECCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHCHHHHHHHH
T ss_conf 972356689999999999766659998899978898410699999997
No 63
>PRK09186 flagellin modification protein A; Provisional
Probab=89.56 E-value=0.9 Score=25.73 Aligned_cols=74 Identities=14% Similarity=0.154 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|...|-+|++| -|.|.++.|.. .+-+|++.+=+. +..+.. .++....+..++.+.+| .+-|+++++++++..
T Consensus 3 ~gK~~lVTGgs~G-IG~aia~~la~-~Ga~V~~~~~~~~~~~~~~-~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~ 78 (255)
T PRK09186 3 EGKTILITGAGGL-IGSALVKAILE-AGGIVIAADINKEALNKLL-ESLGTIEKTKLTLVELDITDQESLEEFLSKSQE 78 (255)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHH-HHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9598999795868-99999999998-7999999969889999999-999870598079998468999999999999999
No 64
>PRK06767 methionine gamma-lyase; Provisional
Probab=89.28 E-value=0.86 Score=25.84 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=8.6
Q ss_pred CCCCEEECCCCHHHHHHHHH
Q ss_conf 72110106899999999999
Q gi|254780465|r 440 RPENCKVMNKNIDEIKKFIK 459 (469)
Q Consensus 440 k~e~~~~l~nd~~~ik~fI~ 459 (469)
-.+....+.-.+|.+++.|.
T Consensus 358 i~~~lvRlSvGlEd~~DLi~ 377 (386)
T PRK06767 358 IYDNLIRLSVGLESWEDIVS 377 (386)
T ss_pred CCCCEEEEEEEECCHHHHHH
T ss_conf 79297999941099999999
No 65
>PRK06198 short chain dehydrogenase; Provisional
Probab=88.77 E-value=1.2 Score=24.85 Aligned_cols=74 Identities=15% Similarity=0.283 Sum_probs=45.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7982079971665404679998616678559997357767-6033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI-SVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v-S~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|...|-+|++| -|.|.+..|. ..+.++++++-...- .+-...++.. .+.+++.+..| .+.+|++++++++..
T Consensus 5 ~gK~alVTGas~G-IG~aiA~~la-~~Ga~vv~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 80 (268)
T PRK06198 5 DGKIALVTGGTQG-LGAAIARLFA-ERGAAGLVICGRSAEKGEAKAAELEA-LGAKAVFVQADLAKVEDCRAVVAAADE 80 (268)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9988999585778-9999999999-87993899962988899999999995-499679998268999999999999999
No 66
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.77 E-value=1.3 Score=24.59 Aligned_cols=75 Identities=15% Similarity=0.254 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHH-HCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577676033-213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQ-QKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q-~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|...|-++++| -|.|.+..|. ..+-+|++.+-... ...+ -.+.....+.+++.+..| .+-|+|++++.++...
T Consensus 2 ~gKvalITGgs~G-IG~aiA~~la-~~Ga~V~i~~~~~~-~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 78 (249)
T PRK06077 2 KDKVVVVTGSGRG-IGRAIAVRLA-KEGAKVVVNAKKRA-EEMNETLRMVKEYGGEGIGVLADVSTREGCRTLAKAALDN 78 (249)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHH-HCCCEEEEEECCCH-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 6198999263678-9999999999-87998999848876-8999999999975995899984799999999999999998
No 67
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.39 E-value=1.8 Score=23.65 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577--676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++| ..+++..|+.-|.|.+..|. ..+.++++.+-.. .....++. . ...+.+++.+.+| .+.++|+.+++++..
T Consensus 6 kgK-~~lITGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 81 (250)
T PRK12825 6 SGR-VALVTGAARGIGRAIALRLA-AAGADVIVHPPSDEAAAEETVAA-V-EALGRRAQAVQADVTDAAALEAAVEELVE 81 (250)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHH-H-HHCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 978-89993895589999999999-87998999979887899999999-9-85399489999418999999999999999
No 68
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=88.37 E-value=1.6 Score=23.93 Aligned_cols=164 Identities=12% Similarity=0.195 Sum_probs=83.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
..++|+.|++..++--|.|.+..|. ..+-+|++.|-...-.--+..+.....+.++..+.+| .+-++++++++++...
T Consensus 3 ~~~~KvalVTGa~~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 81 (252)
T PRK06947 3 NSDRKVVLITGASRGIGRATAVLAA-ARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQAA 81 (252)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9999089993883589999999999-879989998089878999999999964992899984799999999999999998
Q ss_pred HHHHCCCC--------------CCCCCCCCHHHCCCC---HHHHHH--HHHHHCCC-----CCCEEEEEECCCHHH--HH
Q ss_conf 54313583--------------113455654440110---558999--99874477-----887389963465788--78
Q gi|254780465|r 208 VFFCHSVN--------------LSGINSINWARIMAQ---IVYYFV--SSIALGSP-----NRNISFSVPTGNFGD--IF 261 (469)
Q Consensus 208 ~~~~~~~~--------------l~s~NSIN~~Ril~Q---~vyYf~--a~~~~~~~-----~~~i~f~VPtGNfGn--i~ 261 (469)
| .++. +.-..-=.|-|++-- -+|+.. +..++.+. +.-|+++--.|..|. -+
T Consensus 82 --~-G~iD~lVnNAG~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~IinisS~~~~~~~~~~~ 158 (252)
T PRK06947 82 --F-GRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGSPNEY 158 (252)
T ss_pred --H-CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCCCH
T ss_conf --4-9988999876435799981239999999999998579999999999999984579985899985665455888730
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 86677750898770587236763356775322201023455656420
Q gi|254780465|r 262 AGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 262 Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
++|-+-|.|+- .|+|.+...-=...-.+.+++|..
T Consensus 159 ~~Y~~sK~al~------------~ltr~lA~e~a~~gIrvN~IaPG~ 193 (252)
T PRK06947 159 VDYAGSKGAVD------------TLTLGLAKELGPHGVRVNAVRPGL 193 (252)
T ss_pred HHHHHHHHHHH------------HHHHHHHHHHHHHCCEEEEEEECC
T ss_conf 66799999999------------999999999746292899897115
No 69
>PRK07503 methionine gamma-lyase; Provisional
Probab=88.26 E-value=1.3 Score=24.52 Aligned_cols=15 Identities=20% Similarity=0.060 Sum_probs=8.3
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 708999999875202
Q gi|254780465|r 326 RNSLLVKEAFYSLEN 340 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~ 340 (469)
.++.++.+++++-..
T Consensus 271 ~nA~~lA~~L~~hp~ 285 (403)
T PRK07503 271 ANAQQVAEFLARQPA 285 (403)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999974899
No 70
>PRK06227 consensus
Probab=88.07 E-value=1.4 Score=24.37 Aligned_cols=75 Identities=15% Similarity=0.255 Sum_probs=47.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|...|-+|++| -|.|.+..|.. .+-+|++.+-...-..-...++.. .+.+++.+..| .+.++|+++++++...
T Consensus 4 ~gKvalVTGas~G-IG~aiA~~la~-~Ga~V~i~~~~~~~~~~~~~~~~~-~g~~~~~~~~Dvs~~~~v~~~~~~~~~~ 79 (256)
T PRK06227 4 SGKVAIVTGGGQG-IGAAIAQTFAE-NGAKVVIADIDEEAGLEREEMLRS-NGLDALFVKTDVSDEEDVKNMVRKTVER 79 (256)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9988999586688-99999999998-799999996988899999999995-5991899981689999999999999998
No 71
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=87.86 E-value=1.8 Score=23.58 Aligned_cols=73 Identities=11% Similarity=0.185 Sum_probs=48.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 82079971665404679998616678559997357767--6033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI--SVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v--S~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.|..+++..|+--|.|.+..|.. .+-++++.|-..+- -+..+ ++ ...+.+++.+.+| .+-|+|+++++++...
T Consensus 4 gKvalVTGas~GIG~aia~~la~-~Ga~Vvi~~~~~~~~~~~~~~-~~-~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~ 79 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAK-EGYDIAINYARSRKAAEETAN-EI-EQLGRKALVVKANVGDVEKIKEMFSQIDEH 79 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHH-HH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 49899958766999999999998-899899975999899999999-99-954995899984799999999999999998
No 72
>PRK12743 acetoin dehydrogenase; Provisional
Probab=87.74 E-value=1.8 Score=23.63 Aligned_cols=163 Identities=13% Similarity=0.215 Sum_probs=81.5
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCCHH--
Q ss_conf 20799716654046799986166785599973577676033213113447870899717-965888999999750154--
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSDVF-- 209 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D~~-- 209 (469)
|+.|++..|+--|.|.+..|. ..+-+++|.|-.+.-..-+-.+.....+..++.+.+| .+-++|+++++++...-.
T Consensus 3 KValITGgs~GIG~a~a~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G~i 81 (253)
T PRK12743 3 QVAIVTASDSGIGKACALLLA-QQGFDIGITWHSDEEGAKETAEEVVSHGVRAEIVHLDLSNLPEGAQAIEKLIQRLGRL 81 (253)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCC
T ss_conf 989990758899999999999-8799899974899799999999999459918999904899999999999999981999
Q ss_pred --HH------CCCCCCCCCCCCHHHCCCCHH---HHHH--HHHHHCCC---CCCEEEEEECCCHHHH-HHHHHHHHCCCC
Q ss_conf --31------358311345565444011055---8999--99874477---8873899634657887-886677750898
Q gi|254780465|r 210 --FC------HSVNLSGINSINWARIMAQIV---YYFV--SSIALGSP---NRNISFSVPTGNFGDI-FAGYMAKMMGLP 272 (469)
Q Consensus 210 --~~------~~~~l~s~NSIN~~Ril~Q~v---yYf~--a~~~~~~~---~~~i~f~VPtGNfGni-~Ag~~Ak~MGLP 272 (469)
|. ..-.+...---.|-|++-.-+ ||.. +..++.+. ++-|+++-=++..|.- .+.|-|-|-|+-
T Consensus 82 DilVNnAG~~~~~~~~~~~~~~w~~~~~vNl~~~f~~~~~~~~~m~k~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~ 161 (253)
T PRK12743 82 DVLVNNAGAMTKAPFLDMAFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHALG 161 (253)
T ss_pred CEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCHHHHHHHHHHH
T ss_conf 89998998999998002999999999999859999999999999997589963899963665578898589999999999
Q ss_pred CCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 770587236763356775322201023455656420
Q gi|254780465|r 273 IEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 273 I~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
-|+|.+..--=+..-.+.+++|.+
T Consensus 162 ------------~ltk~lA~ela~~gIrVN~VaPG~ 185 (253)
T PRK12743 162 ------------GLTKAMALELVEHKILVNAVAPGA 185 (253)
T ss_pred ------------HHHHHHHHHHHHHCEEEEEEEECC
T ss_conf ------------999999999702192999996488
No 73
>PRK07904 short chain dehydrogenase; Provisional
Probab=87.37 E-value=2.2 Score=23.06 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=49.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|.+.|.+|||| -|-|.++.|....+-++++..-.+ .--+....++....+..+..+..| .+.|+++.++++++..
T Consensus 7 n~KtvlITGassG-IG~a~a~~~~~~g~~~v~l~~r~~~~~~~~~~~~~~~~~~~~v~~~~~D~~d~~~~~~~i~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGTSE-IGLAICERYLRNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 9998999356509-999999999974989899997897326999999998549971899955667989999999999854
Q ss_pred H
Q ss_conf 5
Q gi|254780465|r 208 V 208 (469)
Q Consensus 208 ~ 208 (469)
.
T Consensus 86 ~ 86 (253)
T PRK07904 86 G 86 (253)
T ss_pred C
T ss_conf 9
No 74
>TIGR01328 met_gam_lyase methionine gamma-lyase; InterPro: IPR006237 This family of sequences is a methionine gamma-lyase subset of a family of PLP-dependent trans-sulphuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine..
Probab=86.93 E-value=0.86 Score=25.84 Aligned_cols=107 Identities=13% Similarity=0.198 Sum_probs=74.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC---CCCHHHHCCCEEECCC
Q ss_conf 812068238889999999973179-820799716654046799986166785599973577---6760332131134478
Q gi|254780465|r 108 TLSFKDIAMQFIAELMDHILEERD-HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG---RISVVQQKQMTTSEAS 183 (469)
Q Consensus 108 T~aFKD~a~q~l~~~~~~~l~~~~-~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g---~vS~~Q~~qmtt~~~~ 183 (469)
-..-||++=..+..+= -+|--|+ +-++|=-+---+...+.++-.+..|.|+- ||||-- -=-++-.|||-.. -
T Consensus 231 ~~g~KD~tG~ViSPfd-AwL~lRGLkTL~~RM~rhsenA~kvAe~Lk~HPaVe~-V~YPG~~~hp~hdiaakQM~~g--G 306 (392)
T TIGR01328 231 LVGVKDMTGAVISPFD-AWLVLRGLKTLAVRMKRHSENAEKVAEYLKEHPAVEK-VYYPGLEEHPDHDIAAKQMKKG--G 306 (392)
T ss_pred CCCCCCCCCCEECHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE-EECCCCCCCCCCHHHHHHHHCC--C
T ss_conf 1110005665005578-9999743667778887730538999998523886021-2368877888740899987404--8
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCC
Q ss_conf 70899717965888999999750154313583113455
Q gi|254780465|r 184 NINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINS 221 (469)
Q Consensus 184 Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NS 221 (469)
..-.+.++|.|.|..+++.++ +-++..++|+-+-|
T Consensus 307 gm~~F~lKgg~a~~~k~~n~L---kLIr~AVSLGdaEt 341 (392)
T TIGR01328 307 GMLAFELKGGEADAKKLLNRL---KLIRLAVSLGDAET 341 (392)
T ss_pred CEEEEEECCCHHHHHHHHHHH---HHHHHHHHCCCCCC
T ss_conf 727754325668999998755---57665531277420
No 75
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=86.74 E-value=2.3 Score=22.90 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=47.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+.|..+++..|+--|.|.+.+|. ..+-+|++-|-..+-..-+-.+.....+.+++.+..| .+.++|+++|+++..
T Consensus 5 ~gKvalVTG~s~GIG~aiA~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~~~~~v~~~~~ 80 (247)
T PRK12935 5 NGKVAIVTGGAKGIGKAITVALA-QEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVN 80 (247)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 96989991727689999999999-87998999769998999999999984399589998579999999999999999
No 76
>PRK12937 short chain dehydrogenase; Provisional
Probab=86.68 E-value=2 Score=23.25 Aligned_cols=74 Identities=9% Similarity=0.224 Sum_probs=48.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC--HHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 179820799716654046799986166785599973577676--033213113447870899717-96588899999975
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRIS--VVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS--~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
..+|...|-++|+| -|.|.+..|. ..+-+|++-|-...-. .+.+ +.. ..+.+++.+.+| .+-+++.++|+++.
T Consensus 3 ~sgK~alVTGgs~G-IG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~Dv~~~~~~~~~v~~~~ 78 (245)
T PRK12937 3 DSNKVAIVTGASRG-IGAAIARRLA-ADGFAVAVNYAGSAAMADELVE-EIE-AAGGRAIAVQADVADAAAVDRLFEAAE 78 (245)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHH-HHH-HCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99988999485778-9999999999-8799999976998689999999-999-659958999837899999999999999
Q ss_pred C
Q ss_conf 0
Q gi|254780465|r 206 S 206 (469)
Q Consensus 206 ~ 206 (469)
.
T Consensus 79 ~ 79 (245)
T PRK12937 79 T 79 (245)
T ss_pred H
T ss_conf 9
No 77
>PRK09134 short chain dehydrogenase; Provisional
Probab=86.36 E-value=2.4 Score=22.72 Aligned_cols=74 Identities=8% Similarity=0.140 Sum_probs=47.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC--CCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 98207997166540467999861667855999735776--76033213113447870899717-9658889999997501
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR--ISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~--vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+|..+++..|+--|.|.+..|.. .+-+|+|.|-... .-++++ +... .+..++.+.+| .+-++|+++|+++...
T Consensus 8 ~~KvalVTGas~GIG~aiA~~la~-~Ga~V~i~~~~~~~~~~~~~~-~i~~-~g~~~~~~~~Dl~~~~~~~~~v~~~~~~ 84 (256)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAA-HGFDVAVHYNRSRDEAEALAA-EIRA-LGRRAVALQADLADEAQVRALVARASAA 84 (256)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999799948867899999999998-799899984999899999999-9996-4991899975589999999999999998
No 78
>PRK06701 short chain dehydrogenase; Provisional
Probab=85.86 E-value=3 Score=22.06 Aligned_cols=78 Identities=18% Similarity=0.250 Sum_probs=49.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
+-+.|..+++..|+--|.|.+..|. ..+-+|.+.|=...-..-+-.+.....+..+..+..| .+.++|+.+|+++...
T Consensus 42 rL~GKvalVTGgs~GIG~aiA~~la-~~GA~V~i~~~~~~~~a~~~~~~~~~~G~~~~~~~~Dv~d~~~v~~~v~~~~~~ 120 (289)
T PRK06701 42 KLKGKVALITGGDSGIGRAVAVAFA-KEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEQFCKDAVEETVRE 120 (289)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 7799989996825799999999999-879989998289467899999999963990899984789999999999999998
No 79
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=85.84 E-value=3 Score=22.06 Aligned_cols=160 Identities=14% Similarity=0.214 Sum_probs=81.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
-++|...|-+|++| -|.|.+.+|.. .+-+|++..-. ...+.++ + ....+.+++.+.+| .+.|+++++++++...
T Consensus 6 L~gKvalVTGas~G-IG~aia~~la~-~Ga~Vv~~~~~-~~~~~~~-~-~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~ 80 (251)
T PRK12481 6 LNGKVAIITGCNTG-LGQGMAIGLAK-AGADIVGVGVA-EAPETQA-Q-VEALGRKFHFITADLIQQKDIDSIVSQAVEV 80 (251)
T ss_pred CCCCEEEEECCCCH-HHHHHHHHHHH-CCCEEEEECCC-CHHHHHH-H-HHHCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99998999486768-99999999998-69999997898-7199999-9-9975994799991279999999999999998
Q ss_pred HHHHCCCC-------------CCCCCCCCHHHCCCC---HHHHHH-H-HHHHCC---CCCCEEEEEECCCHHHH-HHHHH
Q ss_conf 54313583-------------113455654440110---558999-9-987447---78873899634657887-88667
Q gi|254780465|r 208 VFFCHSVN-------------LSGINSINWARIMAQ---IVYYFV-S-SIALGS---PNRNISFSVPTGNFGDI-FAGYM 265 (469)
Q Consensus 208 ~~~~~~~~-------------l~s~NSIN~~Ril~Q---~vyYf~-a-~~~~~~---~~~~i~f~VPtGNfGni-~Ag~~ 265 (469)
- .++. +....--.|-|++-. -.||.. + ..++.+ .++-|+++--+|..|.. .+.|-
T Consensus 81 ~---g~iDilVNNAG~~~~~~~~~~~~~~w~~~~~vNl~~~~~~~q~~~~~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~ 157 (251)
T PRK12481 81 M---GHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQGGIRVPSYT 157 (251)
T ss_pred C---CCCCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCCHHH
T ss_conf 1---9998999899899999903499999999999983779999999999999856993487402133336889871479
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 7750898770587236763356775322201023455656420
Q gi|254780465|r 266 AKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 266 Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
|-|-|+- -|+|.+...-=+..-.+.+++|..
T Consensus 158 asKaav~------------~ltr~lA~e~a~~gIrVN~IaPG~ 188 (251)
T PRK12481 158 ASKSAVM------------GLTRALATELSQYNINVNAIAPGY 188 (251)
T ss_pred HHHHHHH------------HHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 9999999------------999999999703096999995288
No 80
>PRK06138 short chain dehydrogenase; Provisional
Probab=85.30 E-value=2.7 Score=22.46 Aligned_cols=161 Identities=15% Similarity=0.208 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 798207997166540467999861667855999735776-76033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-ISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|...|-+|++| -|.|.+..|. ..+-+|++..=... .-+..+ .+ . .+.+++.+.+| .+.++|+.+++++...
T Consensus 4 ~gKvalVTGas~G-IG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~-~~-~-~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 78 (252)
T PRK06138 4 AGRVAIVTGAGSG-IGRATAKLFA-REGARVVVADRDAEAAERVAA-AI-A-AGGRAFARQGDVGSAEAVEALVDFVAAR 78 (252)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HH-H-CCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9988999474679-9999999999-879989999688789999999-98-3-7991999994289999999999999998
Q ss_pred HH----HHCCC------CCCCCCCCCHHHCCCCHH---HHHH-HHH-HHCC--CCCCEEEEEECCCHHH-HHHHHHHHHC
Q ss_conf 54----31358------311345565444011055---8999-998-7447--7887389963465788-7886677750
Q gi|254780465|r 208 VF----FCHSV------NLSGINSINWARIMAQIV---YYFV-SSI-ALGS--PNRNISFSVPTGNFGD-IFAGYMAKMM 269 (469)
Q Consensus 208 ~~----~~~~~------~l~s~NSIN~~Ril~Q~v---yYf~-a~~-~~~~--~~~~i~f~VPtGNfGn-i~Ag~~Ak~M 269 (469)
-. +...- .+....--.|-|++-.-+ |++. +.+ .+.+ .++-|+++=-.|-.|. -.+.|-|-|.
T Consensus 79 ~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~p~m~~~~~G~IInisS~~~~~~~~~~~~Y~asKa 158 (252)
T PRK06138 79 WGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASKG 158 (252)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHH
T ss_conf 29998999898899999801099999999999996999999999999999819967999765665778999778999999
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 8987705872367633567753222010-23455656420
Q gi|254780465|r 270 GLPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 270 GLPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
|+- -|+|.+.. +|-+ .-.+.+++|..
T Consensus 159 av~------------~lTk~lA~-e~a~~gIrVNaI~PG~ 185 (252)
T PRK06138 159 AIA------------SLTRAMAL-DHATDGIRVNAVAPGT 185 (252)
T ss_pred HHH------------HHHHHHHH-HHHHCCEEEEEEEECC
T ss_conf 999------------99999999-8622291999997588
No 81
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=85.27 E-value=1.5 Score=24.17 Aligned_cols=78 Identities=12% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHH
Q ss_conf 9973179820799716654046799986166785599973577-676033213113447870899717-96588899999
Q gi|254780465|r 125 HILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVK 202 (469)
Q Consensus 125 ~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk 202 (469)
....-++|...|-+|++| -|.|.+.+|.. .+-+|++..-.. +.....+ ++.. .+..++.+.+| .+.++|+++++
T Consensus 4 ~lf~L~gKvalVTGas~G-IG~aia~~la~-~Ga~V~i~~~~~~~~~~~~~-~l~~-~g~~~~~~~~Dvtd~~~v~~~~~ 79 (278)
T PRK08277 4 NLFSLKGKVAVITGGGGV-LGGAMAKELAR-AGAKVAILDRNQEKAEAVVE-EIKA-NGGEAIALKADVLDKESLEQARQ 79 (278)
T ss_pred CCCCCCCCEEEEECCCCH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHH-CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 063889998999586748-99999999998-79989999798899999999-9984-59909999824899999999999
Q ss_pred HHHC
Q ss_conf 9750
Q gi|254780465|r 203 NLFS 206 (469)
Q Consensus 203 ~~f~ 206 (469)
++..
T Consensus 80 ~~~~ 83 (278)
T PRK08277 80 QILK 83 (278)
T ss_pred HHHH
T ss_conf 9999
No 82
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=84.72 E-value=2.6 Score=22.54 Aligned_cols=15 Identities=27% Similarity=0.208 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 708999999875202
Q gi|254780465|r 326 RNSLLVKEAFYSLEN 340 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~ 340 (469)
.++.++.+++++-..
T Consensus 300 ~nA~~vA~~L~~hp~ 314 (426)
T PRK05994 300 DNALAVAEWLSGHPK 314 (426)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999962999
No 83
>PRK07985 oxidoreductase; Provisional
Probab=84.38 E-value=3.5 Score=21.61 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=49.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973-577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILF-PEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vly-P~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.. |++..|+--|.|.+.+|. ..+-+|++-| +..+...-+..++....+.++..+..| .+.++|+.+++++..
T Consensus 48 ~gKva-lVTGas~GIG~aiA~~lA-~~GA~Vvi~~~~~~~~~a~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~lv~~~~~ 124 (294)
T PRK07985 48 KDRKA-LVTGGDSGIGRAAAIAYA-REGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99979-991726699999999999-879999994299666789999999997299589997678999999999999999
No 84
>PRK06234 methionine gamma-lyase; Provisional
Probab=84.10 E-value=3.3 Score=21.78 Aligned_cols=15 Identities=20% Similarity=0.193 Sum_probs=8.8
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 708999999875202
Q gi|254780465|r 326 RNSLLVKEAFYSLEN 340 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~ 340 (469)
.++.++.+|+++-..
T Consensus 271 ~nA~~lA~~L~~hp~ 285 (399)
T PRK06234 271 KNAMEVAEFLEKHPA 285 (399)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 999999999984898
No 85
>PRK08945 short chain dehydrogenase; Provisional
Probab=84.05 E-value=2.7 Score=22.36 Aligned_cols=72 Identities=14% Similarity=0.257 Sum_probs=42.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--CCCEEECCCCEEEEEECC---CHHHHHHHHHHH
Q ss_conf 798207997166540467999861667855999735776760332--131134478708997179---658889999997
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ--KQMTTSEASNINVIAVQS---SFDDCQKIVKNL 204 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~--~qmtt~~~~Nv~~i~v~G---~FDDcq~~Vk~~ 204 (469)
++|.+.|-+|+ +--|.|.+..|. ..+.+|++..-. ...+++ .++....+.+++.+.++- +-++|+.+++.+
T Consensus 12 ~gK~~lITGas-~GIG~aiA~~la-~~Ga~Vil~~r~--~~~l~~~~~el~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i 87 (245)
T PRK08945 12 KDRIILVTGAG-DGIGREAALTYA-RHGATVILLGRT--EEKLEAVYDEIEAAGGPQPAIIPLDLLGATEQNYQDLADTI 87 (245)
T ss_pred CCCEEEEECCC-HHHHHHHHHHHH-HCCCEEEEEECC--HHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 97989994886-189999999999-879989999698--89999999999974798448999446759999999999999
Q ss_pred H
Q ss_conf 5
Q gi|254780465|r 205 F 205 (469)
Q Consensus 205 f 205 (469)
.
T Consensus 88 ~ 88 (245)
T PRK08945 88 E 88 (245)
T ss_pred H
T ss_conf 9
No 86
>PRK09135 pteridine reductase; Provisional
Probab=83.98 E-value=3.1 Score=22.02 Aligned_cols=76 Identities=9% Similarity=0.146 Sum_probs=46.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 7982079971665404679998616678559997357767-6033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI-SVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v-S~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+|...|-+|+ +--|.|.+..|. ..+-+|++.|-...- .+--..++....+..++.+..| .+-++|+++++++...
T Consensus 5 sgKvalVTGas-~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 82 (249)
T PRK09135 5 SSKVALITGGA-RRIGAAIARTLH-AAGYRVAVHYHRSAAEADALAAELNRLRPGSAAALQADLLDPDALEQLVAAAVAA 82 (249)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99889996887-589999999999-8799899981898799999999998505981899981699999999999999998
No 87
>PRK07063 short chain dehydrogenase; Provisional
Probab=83.83 E-value=3.6 Score=21.52 Aligned_cols=75 Identities=9% Similarity=0.150 Sum_probs=47.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+.|..|++..|+--|.|.+..|. ..+-+|++.+-...-.+-...++....+.+++.+.+| .+.++|+++++++..
T Consensus 6 ~gKvalVTGa~~GIG~aiA~~~a-~~Ga~V~i~~~~~~~~~~~~~~l~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~ 81 (259)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFV-REGAAVALADLDAALAERAAAAIARQTGARVLALPADVTRAASVRAAVARAEA 81 (259)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99889995878789999999999-87998999979878999999999885099189998368999999999999999
No 88
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=83.71 E-value=3.5 Score=21.59 Aligned_cols=129 Identities=16% Similarity=0.193 Sum_probs=69.0
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC------CCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHH
Q ss_conf 3179820799716654046799986166785599973577------6760332131134478708997179658889999
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG------RISVVQQKQMTTSEASNINVIAVQSSFDDCQKIV 201 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g------~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~V 201 (469)
.++.+++.|++| |..|++.+.....+.-.+-++||=.. ..-+++. ..+..+ ++.. ..|++.||.
T Consensus 3 ~~k~~KI~IIGa--G~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h--~~~~~~-~~~i--~~gdy~~~~--- 72 (315)
T PRK00066 3 KKKHNKVVLVGD--GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSH--AVPFTS-PTKI--YAGDYSDCK--- 72 (315)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHH--HCCCCC-CCEE--EECCHHHHC---
T ss_conf 878984999997--988999999998669988899980898710789998885--412368-8479--739999967---
Q ss_pred HHHHCCHHHHCCCCCCCCCCCCHHHCCCCHH--------HHHHH-HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC
Q ss_conf 9975015431358311345565444011055--------89999-98744778873899634657887886677750898
Q gi|254780465|r 202 KNLFSDVFFCHSVNLSGINSINWARIMAQIV--------YYFVS-SIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLP 272 (469)
Q Consensus 202 k~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~v--------yYf~a-~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLP 272 (469)
|.+. -+.++. ..|--+|.= =-+-. .-++.+....-.+.|- .|=-|+.+..+.|..|+|
T Consensus 73 -----daDv----VVitAG---~~~k~g~tR~dll~~N~~I~~~i~~~i~~~~p~~i~ivv-tNPvDvmt~~~~k~sg~p 139 (315)
T PRK00066 73 -----DADL----VVITAG---APQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA-SNPVDILTYATWKFSGFP 139 (315)
T ss_pred -----CCCE----EEECCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE-CCCHHHHHHHHHHHHCCC
T ss_conf -----9999----998999---989999987899987899999988776424885399993-691899999999974998
Q ss_pred CCEEEEE
Q ss_conf 7705872
Q gi|254780465|r 273 IEKLIIA 279 (469)
Q Consensus 273 I~kli~A 279 (469)
=+|++-.
T Consensus 140 ~~rViG~ 146 (315)
T PRK00066 140 KERVIGS 146 (315)
T ss_pred CHHEEEE
T ss_conf 0225641
No 89
>PRK09730 hypothetical protein; Provisional
Probab=83.59 E-value=3.5 Score=21.63 Aligned_cols=73 Identities=12% Similarity=0.139 Sum_probs=47.1
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 20799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++.|++..|+--|.|.+..|. ..+-+|++.|=.+.-..-+-.+.....+..++.+.+| .+.|+|+++++++..
T Consensus 2 KValITGas~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~i~~ 75 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLA-QEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQ 75 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 799990622699999999999-87999999669987899999999997499289998258999999999999999
No 90
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=83.46 E-value=3.8 Score=21.35 Aligned_cols=164 Identities=12% Similarity=0.186 Sum_probs=83.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCCHH-
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-965888999999750154-
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSDVF- 209 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D~~- 209 (469)
+|..+++..|+--|.|.+..|.. .+-++++.+=...--..+..+.....+.+++.+.+| .+-++|+.+|+++.....
T Consensus 2 ~KvalITGas~GIG~a~a~~la~-~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~v~~~~~~~g~ 80 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLA-DGYRVIATYFGNYDAAKDWFEEYGFTEDQVRLKSLDVTDTEECQEALARIEEEEGP 80 (245)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 85999947888899999999998-79989999588077899999987404993899991389999999999999997499
Q ss_pred ---HH------CCCCCCCCCCCCHHHCCCC---HHHHHH-HHH-HHC--CCCCCEEEEEECCCHHH-HHHHHHHHHCCCC
Q ss_conf ---31------3583113455654440110---558999-998-744--77887389963465788-7886677750898
Q gi|254780465|r 210 ---FC------HSVNLSGINSINWARIMAQ---IVYYFV-SSI-ALG--SPNRNISFSVPTGNFGD-IFAGYMAKMMGLP 272 (469)
Q Consensus 210 ---~~------~~~~l~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~--~~~~~i~f~VPtGNfGn-i~Ag~~Ak~MGLP 272 (469)
|. ..-.+....-=.|-+++-- .++++. +.+ .+. ..++-|+++=-+|-.|. -.+.|-|-|.|+-
T Consensus 81 iDiLVnnAG~~~~~~~~~~~~e~w~~~~~vNl~~~f~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~ 160 (245)
T PRK12824 81 VDILVNNAGITRDSGFKRMSHQEWNDVINTNLNSVFNVTQPLFPAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMI 160 (245)
T ss_pred CCEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHH
T ss_conf 98999898889999902399999999999973415999999999999839955999746775778899689999999999
Q ss_pred CCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 770587236763356775322201023455656420
Q gi|254780465|r 273 IEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 273 I~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
-|+|-+..---+..-.+.+++|.+
T Consensus 161 ------------~ltk~lA~E~a~~gIrvN~I~PG~ 184 (245)
T PRK12824 161 ------------GFTKALASEGARYGITVNCIAPGY 184 (245)
T ss_pred ------------HHHHHHHHHHHHHCEEEEEEEECC
T ss_conf ------------999999999725491999997446
No 91
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=83.27 E-value=3.7 Score=21.47 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|.+.|.+|++| -|.|.+..|.. .+-+|++.-= ++-+-.++....+++++.+..| .+.++++.+++++...
T Consensus 5 ~gK~alVTGas~G-IG~aia~~l~~-~Ga~V~~~~r----~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 77 (263)
T PRK06200 5 TGQVALITGGGSG-IGRALVERFLA-EGARVAVLER----SAEKCASLRQRFGDDVLVVEGDVTSYADNQRAVAQTVDR 77 (263)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHHH-CCCEEEEEEC----CHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 7288999586679-99999999998-7999999979----999999999981886468717999999999999999998
No 92
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=82.59 E-value=3.2 Score=21.86 Aligned_cols=173 Identities=14% Similarity=0.233 Sum_probs=84.5
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHH
Q ss_conf 9999999973179820799716654046799986166785599973577676033213113447870899717-965888
Q gi|254780465|r 119 IAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDC 197 (469)
Q Consensus 119 l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDc 197 (469)
++..|++ ..-++|. .|++..|+--|.|.+.+|. ..+-+|++.+-.....+.+ +.....+.+++.+.+| .+.++|
T Consensus 4 ~~~~m~~-f~L~gKv-alVTGas~GIG~aiA~~la-~~Ga~Vvi~~~~~~~~~~~--~~~~~~g~~~~~~~~Dvs~~~~v 78 (258)
T PRK06935 4 MGFSMDF-FSLKGKV-AIVTGGNTGLGQGYAVALA-KAGADIIITTHGTNWDETR--RLIEKEGRKVTFVQLDLTKKESA 78 (258)
T ss_pred CCCCHHH-CCCCCCE-EEEECCCCHHHHHHHHHHH-HCCCEEEEECCCCCHHHHH--HHHHHCCCCEEEEEECCCCHHHH
T ss_conf 0042543-1999998-9994857589999999999-8799999972997899999--99996699379999048999999
Q ss_pred HHHHHHHHCCHH----HHCC------CCCCCCCCCCHHHCCCC---HHHHHH-HHH-HHC--CCCCCEEEEEECCCHHH-
Q ss_conf 999999750154----3135------83113455654440110---558999-998-744--77887389963465788-
Q gi|254780465|r 198 QKIVKNLFSDVF----FCHS------VNLSGINSINWARIMAQ---IVYYFV-SSI-ALG--SPNRNISFSVPTGNFGD- 259 (469)
Q Consensus 198 q~~Vk~~f~D~~----~~~~------~~l~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~--~~~~~i~f~VPtGNfGn- 259 (469)
+++|+++..... |... -.+.-..--.|-|++-- -+||.. +.+ .+. +.++-|+++=-.|-.|.
T Consensus 79 ~~~v~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~~~m~~~~~G~IInisS~~~~~g~~ 158 (258)
T PRK06935 79 EAVVAEALEKFGKIDILVNNAGTIRRAPLLEYKDEDWQAVIDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGK 158 (258)
T ss_pred HHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCC
T ss_conf 99999999974999999989999999980239999999999986478999999999999983898189995320167888
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 7886677750898770587236763356775322201023455656420
Q gi|254780465|r 260 IFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 260 i~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
-.++|-|-|.|+- -|+|.+...--...-.+.+++|-.
T Consensus 159 ~~~~Y~asKaav~------------~lTr~lA~e~a~~gIrVNaVaPG~ 195 (258)
T PRK06935 159 FVPPYTASKHGVA------------GLTKAFANELAAYNIQVNAIAPGY 195 (258)
T ss_pred CCHHHHHHHHHHH------------HHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 8766999999999------------999999999722698999985488
No 93
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=82.57 E-value=4.1 Score=21.13 Aligned_cols=73 Identities=8% Similarity=0.135 Sum_probs=46.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.|..+++..||.-|.|.+..|. ..+.+|++..=.. +.-+..+ ++. ..+.+++.+.+| .+.++|+++++++...
T Consensus 5 ~Kv~lITGgs~GIG~a~a~~la-~~G~~V~~~~r~~~~l~~~~~-~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 79 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLA-ADGARVVIYDSNEEAAEALAE-ELR-AAGGEAALLVFDVTDEAAVRALIEAAVER 79 (246)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHH-HCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 9889993897589999999999-879999999799999999999-999-65994899997289999999999999997
No 94
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=82.45 E-value=4.2 Score=21.09 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=45.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.|..|++..++--|.|.+..|. ..+-+|++.|-...-..-.........+..+..+.+| .+.++++++|+++..
T Consensus 7 gKvalVTGa~~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~ 81 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFG-KEKAKVVINYRSDESEANDVAEEIKKVGGEAIAVKGDVTVESDVVNLIQSAVK 81 (261)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9989996847789999999999-87999999728987899999999996599389998279999999999999999
No 95
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=82.31 E-value=4.2 Score=21.06 Aligned_cols=100 Identities=18% Similarity=0.303 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEECC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 899899999999986304766786047724-8825466213898120682388899999999731798207997166540
Q gi|254780465|r 66 EIKSSKLRDIVNRSYHCFRNAAVTPLIQLN-ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDT 144 (469)
Q Consensus 66 ~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~-~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDT 144 (469)
-|++++|.+++.+.-..|- ++-++.-+ .+-++--=.|=|+-.|++-. ..+++....++...+++-|+-|.-.
T Consensus 3 yi~~~~L~~~~~~~~~~~~---IIDvR~~dy~GGHI~gAiNiP~~~~~~~~----~~l~~~~~~~~~~~vVfHC~~Sq~R 75 (113)
T cd01531 3 YISPAQLKGWIRNGRPPFQ---VVDVRDEDYAGGHIKGSWHYPSTRFKAQL----NQLVQLLSGSKKDTVVFHCALSQVR 75 (113)
T ss_pred CCCHHHHHHHHHCCCCCEE---EEECCHHHCCCCEECCCEECCCHHHHHHH----HHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 2499999999975999879---99767675288875785761707788767----9999888635960899986767760
Q ss_pred HHHHHHHHCC--------CCCCEEEEECCCCCCCHHHH
Q ss_conf 4679998616--------67855999735776760332
Q gi|254780465|r 145 GAAAIKAFAG--------KKRINMYILFPEGRISVVQQ 174 (469)
Q Consensus 145 GsAa~~a~~~--------~~~i~v~vlyP~g~vS~~Q~ 174 (469)
|..++..|.. ....+|+|| +|+.+.-|+
T Consensus 76 GP~~A~~~~~~l~~~~~~~~~~~v~VL--~GGf~~w~~ 111 (113)
T cd01531 76 GPSAARKFLRYLDEEDLETSKFEVYVL--HGGFNAWES 111 (113)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEE--CCCHHHHHH
T ss_conf 199999999999851036788459997--872688875
No 96
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=82.24 E-value=4.3 Score=21.04 Aligned_cols=73 Identities=10% Similarity=0.076 Sum_probs=46.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 82079971665404679998616678559997357767--6033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI--SVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v--S~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
+|+.+++..|+--|.|.++.|. ..+.+|++.|=.+.- .+..+.+ ...+.+++.+..| .+.|+++.++.++..+
T Consensus 3 ~KvalVTGgs~GIG~aia~~la-~~Ga~Vv~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~Dv~~~~~~~~~~~~i~~~ 78 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLH-KDGFKVVAGCGPNSPRRVKWLEDQ--KALGFDFIASEGNVGDWDSTKAAFDKVKAE 78 (246)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHH--HHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 0989991858699999999999-879989994799817899999999--845997899967879999999999999997
No 97
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.17 E-value=3.7 Score=21.42 Aligned_cols=160 Identities=13% Similarity=0.210 Sum_probs=78.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 179820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
-++|...|-+|+ +--|.|.+.+|.. .+-+|++..-+. +.....+ ++.. .+.+++.+.+| .+.++++++++++..
T Consensus 7 L~gKvalVTGas-~GIG~aiA~~la~-~Ga~V~i~~r~~~~~~~~~~-ei~~-~g~~~~~~~~Dvt~~~~v~~~v~~~~~ 82 (253)
T PRK05867 7 LHGKRALITGAS-TGIGKRVALAYVE-AGAQVAIAARHLDALEKLAD-EIGT-SGGKVVPVCCDVSQHQQVTSMLDQVTA 82 (253)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHH-CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 899989997956-5999999999998-69999999798899999999-9984-599199998369999999999999999
Q ss_pred CHHHHCCCCC-------------CCCCCCCHHHCCCCH---HHHHH-HHH-HHCCC--CC-CEEEEEECCCHHH---HHH
Q ss_conf 1543135831-------------134556544401105---58999-998-74477--88-7389963465788---788
Q gi|254780465|r 207 DVFFCHSVNL-------------SGINSINWARIMAQI---VYYFV-SSI-ALGSP--NR-NISFSVPTGNFGD---IFA 262 (469)
Q Consensus 207 D~~~~~~~~l-------------~s~NSIN~~Ril~Q~---vyYf~-a~~-~~~~~--~~-~i~f~VPtGNfGn---i~A 262 (469)
. | .++.+ .-..--.|-|++--- +|+.. +.. .+.+. +. -|+++--+|..++ -.+
T Consensus 83 ~--~-G~iDiLVnNAG~~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~~~m~~~~~gg~IvnisS~~g~~~~~~~~~~ 159 (253)
T PRK05867 83 E--L-GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVS 159 (253)
T ss_pred H--H-CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHH
T ss_conf 9--5-998599989977888750109999999999997599999999999999981899803887551112657774027
Q ss_pred HHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 66777508987705872367633567753222010-23455656420
Q gi|254780465|r 263 GYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 263 g~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
.|-|-|-|+- -|+|.+.. +|-+ .-.+.+++|-.
T Consensus 160 ~Y~asKaav~------------~ltr~lA~-ela~~gIrVN~VaPG~ 193 (253)
T PRK05867 160 HYCASKAAVI------------HLTKAMAV-ELAPHKIRVNSVSPGY 193 (253)
T ss_pred HHHHHHHHHH------------HHHHHHHH-HHCCCCEEEEEEEECC
T ss_conf 7899999999------------99999999-9700092999996588
No 98
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=81.98 E-value=0.75 Score=26.27 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=42.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHC-CCCCCEEEE--ECC-CCCCCH--HHHCCCEEECCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 98207997166540467999861-667855999--735-776760--332131134478708997179658889999997
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFA-GKKRINMYI--LFP-EGRISV--VQQKQMTTSEASNINVIAVQSSFDDCQKIVKNL 204 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~-~~~~i~v~v--lyP-~g~vS~--~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~ 204 (469)
+..+.+++| ||.-|| ++.++ ..|-|-.+= |=| .+++|| ---+||... .+.+.+|-|-|| ||=.+.||.+
T Consensus 19 G~~Ye~~~A--~DR~sA-iA~vRRheP~VVTLDLGLPPd~d~a~EGl~~L~qIL~~-~P~TKVIViTGN-~~r~NAlkAi 93 (451)
T TIGR02915 19 GADYEVAVA--ADRESA-IALVRRHEPAVVTLDLGLPPDADGASEGLAALQQILAI-APDTKVIVITGN-DDRENALKAI 93 (451)
T ss_pred CCCCEEEEE--CCHHHH-HHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECC-CCCHHHHHHH
T ss_conf 788403553--475789-99860569964773675578988745899999999963-898048998668-9838899996
No 99
>PRK06128 oxidoreductase; Provisional
Probab=81.97 E-value=4.3 Score=20.97 Aligned_cols=76 Identities=14% Similarity=0.295 Sum_probs=44.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEC-CCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973-577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILF-PEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vly-P~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|.. |++..|.--|.|.+.+|+ ..+-+|+|-| +...-..-+-.+.....|..+..+..| .+-++|+.+|.++...
T Consensus 54 ~GKvA-lVTGgssGIG~AiA~~lA-~eGA~Vvi~~~~~~~~~a~~~~~~i~~~G~~a~~v~~Dvsd~~~~~~~v~~~~~~ 131 (300)
T PRK06128 54 QGRKA-LITGADSGIGRATAIAFA-REGADIVLNYLPEEEQDAAEVVQLIQAEGRKAVAVPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99958-991736699999999999-8699999942995567899999999965981899974789999999999999998
No 100
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=81.85 E-value=3.7 Score=21.47 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=9.1
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 708999999875202
Q gi|254780465|r 326 RNSLLVKEAFYSLEN 340 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~ 340 (469)
.++.++.+++++-..
T Consensus 301 ~nA~~lA~~L~~hp~ 315 (431)
T PRK08248 301 ENALAVAKFLEEHPA 315 (431)
T ss_pred HHHHHHHHHHHHCCC
T ss_conf 889999999984899
No 101
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=81.83 E-value=4.4 Score=20.94 Aligned_cols=76 Identities=8% Similarity=0.125 Sum_probs=46.7
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 73179820799716654046799986166785599973577676033213113447870899717-96588899999975
Q gi|254780465|r 127 LEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 127 l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
+.-++|...|.+|++| -|.|.+..|.. .+.+|+...-.. .-+..+-....+.+++.+.+| .+.|+++.+++++.
T Consensus 6 ~~L~gK~alITGas~G-IG~aia~~la~-~Ga~Vv~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 80 (253)
T PRK08993 6 FSLEGKVAVVTGCDTG-LGQGMALGLAE-AGCDIVGINIVE---PTETIEQVTALGRRFLSLTADLRKIDGIPALLERAV 80 (253)
T ss_pred CCCCCCEEEEECCCCH-HHHHHHHHHHH-CCCEEEEECCCC---HHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 3999998999388768-99999999998-799999955877---499999999659957999803799999999999999
Q ss_pred CC
Q ss_conf 01
Q gi|254780465|r 206 SD 207 (469)
Q Consensus 206 ~D 207 (469)
..
T Consensus 81 ~~ 82 (253)
T PRK08993 81 AE 82 (253)
T ss_pred HH
T ss_conf 98
No 102
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=81.34 E-value=4.6 Score=20.82 Aligned_cols=16 Identities=0% Similarity=-0.128 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7089999998752026
Q gi|254780465|r 326 RNSLLVKEAFYSLENK 341 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~~ 341 (469)
+++.++.++.++-..-
T Consensus 258 ~nA~~lA~~L~~hp~V 273 (388)
T PRK08861 258 ESAQEILKYLQTQSLV 273 (388)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 8699999999849992
No 103
>pfam10962 DUF2764 Protein of unknown function (DUF2764). This bacterial family of proteins has no known function.
Probab=81.29 E-value=2.3 Score=22.88 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHH--HHHHHHCCCHHHH--
Q ss_conf 578878866777508987705872367633567753222010234556564200134013788--9998709708999--
Q gi|254780465|r 256 NFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFER--LLFEISGRNSLLV-- 331 (469)
Q Consensus 256 NfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfER--llf~l~~~d~~~v-- 331 (469)
|.-||+||+-||+||+++...|+..+ .+.+.+. .|.|=|-+.|--|+= -|+..++..+-..
T Consensus 146 ~irnILaA~~aRk~g~d~a~~ivgd~---ev~e~L~------------ts~A~dFgL~ee~~~l~~l~~i~~~~~l~~re 210 (271)
T pfam10962 146 NLRNILAAFRARKLGWDVSYVLVGDP---EVLEVLR------------TSDARDFELPEEFDYLRDLLRIYEETPLTLRE 210 (271)
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCH---HHHHHHH------------HCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHH
T ss_conf 99999999999885797013115866---9999997------------16886579874416799999984448067898
Q ss_pred ------H-HHHHHHCCCCCCCCCC
Q ss_conf ------9-9987520265105520
Q gi|254780465|r 332 ------K-EAFYSLENKKYFRIDS 348 (469)
Q Consensus 332 ------~-~~m~~l~~~g~~~i~~ 348 (469)
+ +||++.-....|+++.
T Consensus 211 k~ld~lrw~wlEe~~f~~yF~ier 234 (271)
T pfam10962 211 KKLDLYRWEWLEEAVFFKYFDIER 234 (271)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 877899999999864256565999
No 104
>PRK02794 DNA polymerase IV; Provisional
Probab=81.00 E-value=1.5 Score=24.22 Aligned_cols=15 Identities=13% Similarity=0.381 Sum_probs=9.2
Q ss_pred CCCEEEEEECCCHHH
Q ss_conf 787089971796588
Q gi|254780465|r 182 ASNINVIAVQSSFDD 196 (469)
Q Consensus 182 ~~Nv~~i~v~G~FDD 196 (469)
.+.|.+++||-.|=|
T Consensus 126 ~p~vE~~SIDEaflD 140 (417)
T PRK02794 126 TPLVEPLSIDEAFLD 140 (417)
T ss_pred CCCEEECCCCEEEEE
T ss_conf 986166225526784
No 105
>PRK08339 short chain dehydrogenase; Provisional
Probab=80.98 E-value=4.7 Score=20.74 Aligned_cols=74 Identities=15% Similarity=0.224 Sum_probs=46.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-96588899999975
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
.+|. .+++..|+--|.|.+..|. ..+-+|++.+-...-.+-...++....+.+++.+..| .+-++|+++++++.
T Consensus 7 ~gK~-alITG~s~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~~~l~~~~~~~~~~~~~D~~~~~~v~~~~~~~~ 81 (263)
T PRK08339 7 SGKL-AFTTASSKGIGFGVARVLA-RAGADVIILSRNEENLKRAKEKIKSESDVEVHYIVADLTKREDLERTVKELK 81 (263)
T ss_pred CCCE-EEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9998-9991626099999999999-8699999997988999999999985049857999848999999999999999
No 106
>PRK07677 short chain dehydrogenase; Provisional
Probab=80.37 E-value=4.9 Score=20.60 Aligned_cols=73 Identities=18% Similarity=0.199 Sum_probs=47.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.|..+++..|+--|.|.+..|.. .+-+|++..=...--+-...++.. .+.+++.+.+| .+-++|+++|+++..
T Consensus 3 gK~alVTGgs~GIG~aia~~la~-~Ga~V~i~~r~~~~l~~~~~~i~~-~g~~~~~~~~Dv~~~~~v~~~v~~~~~ 76 (254)
T PRK07677 3 EKVVIITGGSSGMGKAMAKRFAE-EGANVVITGRTKEKLEEAKLEIEQ-FPGQVLTVQMDVRNPDDVQKMIEQIDE 76 (254)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 29899958767899999999998-799999996999999999999985-699099998038999999999999999
No 107
>PRK06460 hypothetical protein; Provisional
Probab=80.29 E-value=4.9 Score=20.59 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=8.4
Q ss_pred CCCHHHHHHHHHHHC
Q ss_conf 970899999987520
Q gi|254780465|r 325 GRNSLLVKEAFYSLE 339 (469)
Q Consensus 325 ~~d~~~v~~~m~~l~ 339 (469)
..++.++.++.++-.
T Consensus 248 ~~nA~~lA~~L~~hp 262 (375)
T PRK06460 248 NSNAQKIAEFLQEHP 262 (375)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 999999999997489
No 108
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase; InterPro: IPR011283 This entry represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of 1.1.1.36 from EC is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. ; GO: 0018454 acetoacetyl-CoA reductase activity, 0042619 poly-hydroxybutyrate biosynthetic process, 0005737 cytoplasm.
Probab=80.01 E-value=5 Score=20.53 Aligned_cols=148 Identities=22% Similarity=0.361 Sum_probs=82.6
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH---HHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC-
Q ss_conf 207997166540467999861667855999735776760---33213113447870899717-9658889999997501-
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV---VQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD- 207 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~---~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D- 207 (469)
|+-+++..+|=-|+|.-.....--..-+-=.+|.+.=.. .|++| ..+..+.++.-| ++||+|+..|+++-+|
T Consensus 1 rvALVTGg~GGIGtAIC~rL~~dG~~V~An~~p~N~~~a~~W~~~~~---~~g~~~~~~~~DV~~~e~c~~~v~~v~a~l 77 (244)
T TIGR01829 1 RVALVTGGTGGIGTAICTRLAKDGYRVAANYVPSNEERAEAWLQEQG---AQGFDFAVVEGDVSSFEDCKAAVAKVEAEL 77 (244)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 94788578774468999999875988988178982589999998626---985147898727677789999999999711
Q ss_pred ---------------HHHHC----------CCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEE-EE--ECCCHHH
Q ss_conf ---------------54313----------58311345565444011055899999874477887389-96--3465788
Q gi|254780465|r 208 ---------------VFFCH----------SVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISF-SV--PTGNFGD 259 (469)
Q Consensus 208 ---------------~~~~~----------~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f-~V--PtGNfGn 259 (469)
.-|++ ..+|.|+ =|..| |+ |.--.=+.++|-||+ || ==|=||=
T Consensus 78 GpvDvLVNNAGITRD~~F~KM~~~qW~~VI~TNL~Sv--FNVT~---pV----~~gM~eRGwGRIiNISSvNG~KGQfGQ 148 (244)
T TIGR01829 78 GPVDVLVNNAGITRDKTFKKMTYEQWSEVIDTNLNSV--FNVTR---PV----IEGMRERGWGRIINISSVNGQKGQFGQ 148 (244)
T ss_pred CCEEEEEECCCCCCCHHHCCCCHHHHHHHHHHCCCCC--CCCCH---HH----HHHHHHCCCCCEEEEEEECCCCCCCCH
T ss_conf 9536898688644030312499846888986313244--15540---01----476621688416884121477565430
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCC
Q ss_conf 78866777508987705872367633567753222010234556564
Q gi|254780465|r 260 IFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSP 306 (469)
Q Consensus 260 i~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~Sp 306 (469)
+=|=|-|-|+ |+ ++..|....=++.-++-|+||
T Consensus 149 --tNYSAAKAG~-iG-----------FTkALA~E~A~kGvTVN~i~P 181 (244)
T TIGR01829 149 --TNYSAAKAGM-IG-----------FTKALAQEGARKGVTVNVIAP 181 (244)
T ss_pred --HHHHHHHHHH-HH-----------HHHHHHHHCCCCCCEEEEECC
T ss_conf --4589886215-67-----------779999721103856754558
No 109
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=79.94 E-value=1.3 Score=24.63 Aligned_cols=99 Identities=16% Similarity=0.343 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEE-ECCCCCCCCCCCHHHHHHHHHHHH-------------HHCC
Q ss_conf 78998999999999863047667860477248825466-213898120682388899999999-------------7317
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLE-LFHGPTLSFKDIAMQFIAELMDHI-------------LEER 130 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~~~~vlE-LfHGPT~aFKD~a~q~l~~~~~~~-------------l~~~ 130 (469)
.+|+.++|++=-+.- |--.+...+ -+ +-.|-=+-==||||+||..=-.-. .+.+
T Consensus 240 ~di~~~~L~~~fDAV-----------VLa~Ga~~p-RDLpI~GREL~GiH~AMefL~~~tk~~l~~~~k~~~GqP~I~ak 307 (517)
T TIGR01317 240 KDISADELKEDFDAV-----------VLATGATKP-RDLPIPGRELKGIHFAMEFLTLNTKALLDDDFKDKDGQPFIKAK 307 (517)
T ss_pred CCCCHHHHHHHCCEE-----------EEECCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEC
T ss_conf 426879987146938-----------983378860-10355776646603786554675485608853666788735422
Q ss_pred CCCEEEEECCCCCHHHHHHHHH--CCCCCCEEEEECCCCCCCHHHHCCCEEE
Q ss_conf 9820799716654046799986--1667855999735776760332131134
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAF--AGKKRINMYILFPEGRISVVQQKQMTTS 180 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~--~~~~~i~v~vlyP~g~vS~~Q~~qmtt~ 180 (469)
+|+++|++. ||||+==+--. .|...|.=|=++|+ .|.||..=+++
T Consensus 308 GK~VvvIGG--GDTG~DCvGTs~RhGA~sV~qFE~mP~---PP~~Ra~~npW 354 (517)
T TIGR01317 308 GKKVVVIGG--GDTGADCVGTSLRHGAASVHQFEIMPK---PPEERAKDNPW 354 (517)
T ss_pred CCEEEEECC--CCCCCHHHHHHHHHHHHHHHHCCCCCC---CCHHHCCCCCC
T ss_conf 867899757--875622456323554355230256888---77677278648
No 110
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=79.64 E-value=4.3 Score=21.03 Aligned_cols=17 Identities=24% Similarity=0.063 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 70899999987520265
Q gi|254780465|r 326 RNSLLVKEAFYSLENKK 342 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~~g 342 (469)
.++.++.+++++-..-.
T Consensus 301 ~nA~~lA~~L~~hp~V~ 317 (433)
T PRK08134 301 ANTRAVVEFLASHPAVE 317 (433)
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 87999999998589967
No 111
>PRK07102 short chain dehydrogenase; Provisional
Probab=79.48 E-value=4.2 Score=21.09 Aligned_cols=72 Identities=18% Similarity=0.281 Sum_probs=42.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
|++.|.+|||| -|.|.+..|.. .+-++++..-.. +..++.+ ++....+..++.+..| .+.++++.++.++..
T Consensus 2 K~vlITGassG-IG~a~A~~la~-~G~~v~l~~R~~~~l~~~~~-~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~ 75 (243)
T PRK07102 2 KKILIIGATSD-IARACARRYAA-AGARLYLAARDTERLERIAA-DLEARGAVAVATHELDILDTARHAAFLDNLPA 75 (243)
T ss_pred CEEEEECCCHH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 97999157459-99999999998-79989999898899999999-99853586289984340369999999999875
No 112
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=79.30 E-value=5.3 Score=20.38 Aligned_cols=71 Identities=8% Similarity=0.069 Sum_probs=46.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--CCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 8207997166540467999861667855999735776760332--13113447870899717-965888999999750
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ--KQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~--~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.+..|++..|+--|.|.+.+|. ..+.+|++..=... ..|+ .+... .+.+++.+..| .+.++|+++|+++..
T Consensus 7 gKvalVTGgs~GIG~a~A~~la-~~Ga~V~i~~~~~~--~~~~~~~~i~~-~g~~~~~~~~Dvt~~~~v~~~v~~~~~ 80 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELA-RAGAAVAIADLNQD--GANAVADEINK-AGGKAIGVAMDVTNEDAVNAGIDKVAE 80 (262)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHH--HHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9989995857789999999999-87999999979889--99999999996-299399998158999999999999999
No 113
>PRK07201 short chain dehydrogenase; Provisional
Probab=79.11 E-value=4.8 Score=20.67 Aligned_cols=74 Identities=16% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+|...|-+|+|| -|.|.+.+++. .+-+|++.--.. +..++.+ ++.. .|..++.+.+| .+-++|+.+|+++..+
T Consensus 375 ~GKvalITGASSG-IG~A~A~~LA~-~GA~Vvl~AR~~e~Le~v~~-ei~~-~Gg~a~~~~~DVtd~~~v~~lv~~i~~~ 450 (663)
T PRK07201 375 EGKHVIITGASSG-IGRATAIKVAE-AGATVFALARDGEKLDELVA-EIRA-RGGQAHAYTCDLTDSASVEHTVKDILGR 450 (663)
T ss_pred CCCEEEECCCCCH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHH-CCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9947999388759-99999999998-79989999899999999999-9995-5991899996279999999999999996
No 114
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.90 E-value=5.4 Score=20.30 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=47.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 98207997166540467999861667855999735776-76033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-ISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+.+..+++..|+--|.|.+..|+ ..+-+|++.+-... ..+..+ ++.. .+..++.+.+| .+.++++++|+++..
T Consensus 9 ~gKvalITGgs~GIG~aia~~la-~~Ga~V~i~~~~~~~l~~~~~-~i~~-~g~~~~~~~~Dv~~~~~v~~~v~~~~~ 83 (263)
T PRK07814 9 DGQVAVVTGAGRGLGAAIALAFA-EAGADVLIAARTESQLDEVAE-QIRA-AGRRAHVVAADLAHPEATAGLAGQAVE 83 (263)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99989995896689999999999-879989999698999999999-9985-299289998158999999999999999
No 115
>COG3016 PhuW Uncharacterized iron-regulated protein [Function unknown]
Probab=78.75 E-value=5.4 Score=20.32 Aligned_cols=143 Identities=20% Similarity=0.359 Sum_probs=70.9
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH---
Q ss_conf 25466213898120682388899999999731798207997166540467999861667855999735776760332---
Q gi|254780465|r 98 EFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ--- 174 (469)
Q Consensus 98 ~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~--- 174 (469)
-|+|++-.|-+.||.++-+.+ + +-..+++|- --|. + ++-.+|-
T Consensus 37 ~yil~t~tg~~iS~q~LiaeL----~-------nadvIlvGE-kHdn--~--------------------~~h~~Ql~l~ 82 (295)
T COG3016 37 DYILATPTGEEISFQALIAEL----L-------NADVILVGE-KHDN--E--------------------EIHELQLKLF 82 (295)
T ss_pred CEEEECCCCCEECHHHHHHHH----H-------CCCEEEEEC-CCCC--H--------------------HHHHHHHHHH
T ss_conf 335414767566599999999----6-------298799703-4576--1--------------------2879999999
Q ss_pred CCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 13113447870899717965888999999750154313583113455654440110558999998744778873899634
Q gi|254780465|r 175 KQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254 (469)
Q Consensus 175 ~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPt 254 (469)
++|+.....+| ++++=-=-+.|..+.+.+...- ..++.| -|..||-. +.|..-|-++..
T Consensus 83 kal~e~~~q~i--LamEmf~~~~Qp~lD~~~~gk~-~~k~el--~eAl~w~k-----~w~wkdY~plvn----------- 141 (295)
T COG3016 83 KALHERYRQVI--LAMEMFQQPYQPFLDEFVEGKI-DEKYEL--LEALRWKK-----TWSWKDYEPLVN----------- 141 (295)
T ss_pred HHHHHHCCCCE--EHHHHHCCCCCHHHHHHHHCCC-CHHHHH--HHHHCCCC-----CCCHHHHHHHHH-----------
T ss_conf 99987245413--0187657542236999996001-178899--98755554-----452767889999-----------
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCC-CCCCCCCCCCCCCCH
Q ss_conf 65788788667775089877058723676335677532220102-345565642001340
Q gi|254780465|r 255 GNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPE-IVMETTSPAMDIQIP 313 (469)
Q Consensus 255 GNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~-~~~~T~SpsMDI~v~ 313 (469)
+|+.-|+|| +|.| |.|---+-.|+.+ +...+.|.--.|+-|
T Consensus 142 ----------~a~~q~~pi----laaN----l~rseI~~iyr~~p~l~g~vst~~ei~~p 183 (295)
T COG3016 142 ----------YAERQGIPI----LAAN----LPRSEIREIYRRGPELVGSVSTPPEIVYP 183 (295)
T ss_pred ----------HHHHCCCCE----EEEC----CCHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf ----------999648963----4405----77888899985398777721378201346
No 116
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=78.72 E-value=5.5 Score=20.26 Aligned_cols=18 Identities=22% Similarity=0.156 Sum_probs=9.6
Q ss_pred EEEECCCCCHHHHHHHHH
Q ss_conf 799716654046799986
Q gi|254780465|r 135 TIVGATSGDTGAAAIKAF 152 (469)
Q Consensus 135 ~il~ATSGDTGsAa~~a~ 152 (469)
+|+=...-||..|.+-|.
T Consensus 77 ii~EP~~rnTApAI~laa 94 (274)
T cd02509 77 IILEPEGRNTAPAIALAA 94 (274)
T ss_pred EEECCCCCCCHHHHHHHH
T ss_conf 896768889799999999
No 117
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=78.16 E-value=5.7 Score=20.15 Aligned_cols=73 Identities=10% Similarity=0.129 Sum_probs=47.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CC-HHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 798207997166540467999861667855999735776-76-033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-IS-VVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS-~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.. +++..|+--|.|.+..|. ..+.+|++.+=... .. ..++ . ....+.+++.+.+| ++-++|+.+++++-.
T Consensus 4 ~gK~~-lITGgs~GIG~aia~~la-~~G~~Vii~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~Dlt~~~~v~~~~~~~~~ 79 (248)
T PRK05557 4 EGKVA-LVTGASRGIGRAIAERLA-AQGANVVLNYASSEAGAEALVA-E-IGALGGKALAVQGDVADAESIERAVDEAKA 79 (248)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHH-H-HHHCCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99889-994897689999999999-8799899996985658999999-9-996399589999038999999999999999
No 118
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.81 E-value=5.8 Score=20.08 Aligned_cols=72 Identities=8% Similarity=0.163 Sum_probs=48.5
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7982079971665-4046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSG-DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSG-DTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.+.|-+|++| --|.|.+.+|.. .+-+|++.+...+.- +.+....+++++.+.+| .+-++|+++++++..
T Consensus 6 ~gK~~lVTGaag~~GIG~a~A~~la~-~Ga~Vv~~~~~~~~~----~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~ 79 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKD-QGATVIYTYQNDRMK----KSLQKLVDEEDLLVECDVASDESIERAFAQIKE 79 (252)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH-CCCEEEEEECCHHHH----HHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 99889998999987799999999998-699999984887999----999985088865999518999999999999999
No 119
>TIGR01137 cysta_beta cystathionine beta-synthase; InterPro: IPR005857 This model discriminates cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain from cysteine synthases. Cysteine synthase (O-acetylserine (thiol)-lyase) is the enzyme responsible for the formation of cysteine from O-acetyl-serine and hydrogen sulphide with the concomitant release of acetic acid - the function of many of these enzymes is unproven.; GO: 0004122 cystathionine beta-synthase activity, 0019343 cysteine biosynthetic process via cystathionine, 0005737 cytoplasm.
Probab=77.78 E-value=4.6 Score=20.77 Aligned_cols=159 Identities=25% Similarity=0.338 Sum_probs=102.0
Q ss_pred CEEEECCC-----CC----E-EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCC----CCEEEEECCCCCH--HHHHHHHH
Q ss_conf 60477248-----82----5-46621389812068238889999999973179----8207997166540--46799986
Q gi|254780465|r 89 TPLIQLNA-----NE----F-LLELFHGPTLSFKDIAMQFIAELMDHILEERD----HYITIVGATSGDT--GAAAIKAF 152 (469)
Q Consensus 89 ~pl~~l~~-----~~----~-vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~----~~~~il~ATSGDT--GsAa~~a~ 152 (469)
+||++|+. +. + =+|+ ..|-+|-||.=. -+|.+- .++.+ .+-||+=.|||+| |-|.++|.
T Consensus 12 TPLVrlnkv~~~lg~~~~~~AK~E~-fNpGGSvKDRIa---~rMie~-AE~sG~lkPGr~TiiEPTSGNTGiGLAL~Aa~ 86 (527)
T TIGR01137 12 TPLVRLNKVSKKLGLKCEVLAKVEF-FNPGGSVKDRIA---LRMIED-AEASGRLKPGRDTIIEPTSGNTGIGLALVAAI 86 (527)
T ss_pred CCEEEEECCCCCCCCCCEEEEEEEE-ECCCCCCHHHHH---HHHHHH-HHHCCCEECCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 7458863234012886068888654-458896213320---046898-72078430688724606888446899999952
Q ss_pred CCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHH-------HHHHHHHHHCCHHHHCCCCCCCCCCCCHH
Q ss_conf 16678559997357767603321311344787089971796588-------89999997501543135831134556544
Q gi|254780465|r 153 AGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDD-------CQKIVKNLFSDVFFCHSVNLSGINSINWA 225 (469)
Q Consensus 153 ~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDD-------cq~~Vk~~f~D~~~~~~~~l~s~NSIN~~ 225 (469)
||.+ +++-.|+ |+|.-..--+-...++ |-...=+-.||+ +++|++++=+-..+-..| .|.-|+
T Consensus 87 kGYk---~Iiv~Pe-KmS~eKv~VL~AlGAE-ivrtPT~a~~d~PeSh~gVa~rL~~EiPga~KIlDQY----~N~~NP- 156 (527)
T TIGR01137 87 KGYK---CIIVLPE-KMSEEKVDVLKALGAE-IVRTPTAAAFDSPESHIGVAKRLVREIPGAHKILDQY----ANPSNP- 156 (527)
T ss_pred CCCE---EEEECCC-CCCHHHHHHHHHHCCE-EEECCCCCCCCCCCCCCHHHHHHCCCCCCCEECCCCC----CCCCCC-
T ss_conf 6863---9998687-5461478999981980-7787888788848652048885222788843352004----788786-
Q ss_pred HCCCCHHHHHHHHHHHCCC--C----CCEE-EEEECCCHHHHHHHHHHHHC
Q ss_conf 4011055899999874477--8----8738-99634657887886677750
Q gi|254780465|r 226 RIMAQIVYYFVSSIALGSP--N----RNIS-FSVPTGNFGDIFAGYMAKMM 269 (469)
Q Consensus 226 Ril~Q~vyYf~a~~~~~~~--~----~~i~-f~VPtGNfGni~Ag~~Ak~M 269 (469)
..||+-..-++-++ + .+|. |+--.|--|-|+. +||++
T Consensus 157 -----~aHY~~Tg~Ei~~q~EGlnlfdk~~~~VAg~GTGGTItG--i~ryL 200 (527)
T TIGR01137 157 -----LAHYDGTGPEILEQCEGLNLFDKLDMFVAGVGTGGTITG--IARYL 200 (527)
T ss_pred -----CCCCCCCHHHHHHHHCCCCHHCCCCEEEECCCCCCHHHH--HHHHH
T ss_conf -----101341058999860573012121178850578831554--55654
No 120
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=77.74 E-value=5.9 Score=20.07 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=8.7
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7089999998752026
Q gi|254780465|r 326 RNSLLVKEAFYSLENK 341 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~~ 341 (469)
.++.++.+|+++-..-
T Consensus 268 ~nA~~vA~~L~~hp~V 283 (398)
T PRK08249 268 ENAMALAEYLQTEPLV 283 (398)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 8999999999839980
No 121
>PRK12939 short chain dehydrogenase; Provisional
Probab=77.14 E-value=6.1 Score=19.96 Aligned_cols=72 Identities=13% Similarity=0.047 Sum_probs=45.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-96588899999975
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
.+..|++..|+--|.|.+..|. ..+-+|++..-...--+-...++.. .|..++.+.+| .+.|+|+++++++-
T Consensus 7 ~KvalVTGgs~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~~~~l~~-~g~~~~~~~~Dv~~~~~~~~~~~~~~ 79 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALA-EAGATVAFNDGLAAEARELAAALEA-AGGRAHAIAADLADPASVQRFFDAAA 79 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 9879995836689999999999-8799999996988999999999995-59909999924899999999999999
No 122
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.03 E-value=6.1 Score=19.93 Aligned_cols=76 Identities=9% Similarity=0.150 Sum_probs=48.7
Q ss_pred CCCCCEEEEECCC-CCHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 1798207997166-54046799986166785599973577676-033213113447870899717-96588899999975
Q gi|254780465|r 129 ERDHYITIVGATS-GDTGAAAIKAFAGKKRINMYILFPEGRIS-VVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 129 ~~~~~~~il~ATS-GDTGsAa~~a~~~~~~i~v~vlyP~g~vS-~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
-++|...|-+|++ ---|.|.+..|. ..+-++++.|-..+.. ++++ ..-...+.+++.+.+| .+-+++++++.++.
T Consensus 4 L~gK~~lVTGaag~rGIG~aiA~~la-~~Ga~Vvi~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 81 (256)
T PRK08594 4 LEGKTYVVMGVANKRSIAWGIARSLH-NAGAKLVFTYAGERLEKEVRE-LAETLEQQESLVLPCDVTSDEEITACFETIK 81 (256)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHH-HHHHHCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99988999899999639999999999-879999997488066999999-9987079947999913899999999999999
Q ss_pred C
Q ss_conf 0
Q gi|254780465|r 206 S 206 (469)
Q Consensus 206 ~ 206 (469)
.
T Consensus 82 ~ 82 (256)
T PRK08594 82 K 82 (256)
T ss_pred H
T ss_conf 9
No 123
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.71 E-value=5.7 Score=20.18 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=46.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+|...|-+|+|| -|.|.+..|.. .+-+|++.-=.. +..++.+ ++.. .|..++.+.+| .+-|+|+.+++++...
T Consensus 39 ~GKvaLITGassG-IG~aiA~~la~-~Ga~Vvl~~R~~~~l~~~~~-~i~~-~g~~~~~~~~Dvtd~~~v~~~v~~~~~~ 114 (290)
T PRK05866 39 TGKRILLTGASSG-IGEAAAEKFAR-RGATVVAVARRKDLLDAVAD-RITA-AGGDAMAIPCDLSDLDAVDALVADVEER 114 (290)
T ss_pred CCCEEEECCCCCH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9998999081309-99999999998-69989999899999999999-9996-4990899977889899999999999998
No 124
>PRK06123 short chain dehydrogenase; Provisional
Probab=76.34 E-value=6.4 Score=19.81 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC-HHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 820799716654046799986166785599973577676-033213113447870899717-965888999999750
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRIS-VVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS-~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+++.+++..|+.-|.|.+..|. ..+.+|++.|=+..-. +-...++. ..+.++..+..| .+.++.+++++++..
T Consensus 3 nKvalITGas~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~-~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 77 (249)
T PRK06123 3 RKVMIITGASRGIGAATALLAA-ERGYAVCLNYLRNRDAAEAVVQAIR-RQGGEALAVAADVADEADVLRLFEAVDR 77 (249)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHHHHH-HCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9889996868799999999999-8799899980898789999999999-6499099998479999999999999999
No 125
>pfam00162 PGK Phosphoglycerate kinase.
Probab=76.17 E-value=6.5 Score=19.78 Aligned_cols=52 Identities=23% Similarity=0.264 Sum_probs=28.4
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 89812068-23888999999997317982079971665404679998616678559997
Q gi|254780465|r 106 GPTLSFKD-IAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 106 GPT~aFKD-~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
-|...++| +.|...+..++..|. +++..+--..|+ .+.++..+.+.=++++|
T Consensus 58 RPk~~~~~~~SL~~va~~L~~~L~---~~V~f~~d~~g~---~~~~~i~~l~~G~I~LL 110 (383)
T pfam00162 58 RPKGGPKDKYSLKPVAKRLSELLG---KPVKFVDDCIGP---EAEAAIAALKPGEVLLL 110 (383)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC---CCCEECCCCCCH---HHHHHHHHCCCCCEEEE
T ss_conf 999998976477999999999866---771515777777---89999971789969987
No 126
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.15 E-value=6.5 Score=19.78 Aligned_cols=72 Identities=14% Similarity=0.224 Sum_probs=46.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++| ..+++..|+--|.|.+..|. ..+-+|++.|-... +.. ++.....+..++.+.+| .+.++++.+|+++-.
T Consensus 5 ~gK-~alVTGas~GIG~aia~~la-~~Ga~V~i~~~~~~--~~~-~~~~~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~ 77 (254)
T PRK08642 5 SEQ-IVLVTGGSRGLGAAIARAFA-REGARVVVNYHRSE--DAA-EALADELGDRAIAIQADVTDRNQVDAMFATATE 77 (254)
T ss_pred CCC-EEEEECHHHHHHHHHHHHHH-HCCCEEEEECCCCH--HHH-HHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 989-99997811199999999999-87999999618988--999-999998199469998069999999999999999
No 127
>PRK07062 short chain dehydrogenase; Provisional
Probab=76.08 E-value=6.5 Score=19.76 Aligned_cols=75 Identities=9% Similarity=0.084 Sum_probs=46.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.. |++..|+--|.|.+..|.. .+-+|++..=.. ++....+..--...+.+++.+.+| .+.++|+++|+++..
T Consensus 7 ~gK~a-lITG~s~GIG~a~a~~la~-~Ga~Vvi~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~ 83 (265)
T PRK07062 7 EGRVA-VVTGGSSGIGLATVELLLE-AGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEA 83 (265)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99989-9957577999999999998-79999999798899999999998736996599997579999999999999999
No 128
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=75.87 E-value=6.6 Score=19.73 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 708999999875202
Q gi|254780465|r 326 RNSLLVKEAFYSLEN 340 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~ 340 (469)
.++.++.+++++-.+
T Consensus 305 ~nA~~iA~~L~~hp~ 319 (436)
T PRK07812 305 ANAQRVAEFLAARDD 319 (436)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999960999
No 129
>PRK06720 hypothetical protein; Provisional
Probab=75.60 E-value=6.7 Score=19.68 Aligned_cols=76 Identities=9% Similarity=0.114 Sum_probs=45.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
-++|...|-+|++ --|.|.+..|. ..+-++++..=...--+-...++... +..+..+..| .+.+||+++++++...
T Consensus 14 L~gKvalITGa~~-GIG~a~A~~la-~~Ga~Vvi~d~~~~~~~~~~~~i~~~-g~~a~~~~~Dvs~~~~v~~~i~~~~~~ 90 (169)
T PRK06720 14 LAGKVAIVTGGGI-GIGRNTALLLA-KQGAKVIVTDIDQESGQATVEEITNL-GGEALFVSYDMEKQGDWQRVISITLNA 90 (169)
T ss_pred CCCCEEEEECCCC-HHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 2999999989754-89999999999-86998999527636599999999974-995378975889999999999999997
No 130
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=75.51 E-value=6.7 Score=19.66 Aligned_cols=12 Identities=25% Similarity=0.252 Sum_probs=6.1
Q ss_pred CCHHHHHHHHHH
Q ss_conf 708999999875
Q gi|254780465|r 326 RNSLLVKEAFYS 337 (469)
Q Consensus 326 ~d~~~v~~~m~~ 337 (469)
.|+.++.++.++
T Consensus 298 ~nA~~vA~~L~~ 309 (432)
T PRK06702 298 ENALAVAKWLAD 309 (432)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999862
No 131
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.44 E-value=6.7 Score=19.65 Aligned_cols=75 Identities=9% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577--676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
..+++.|++..|+--|.|.+..|. ..+-+|++.+=.. +....++ .....+.++..+.+| .+-++++++++++..
T Consensus 3 ~~~KValVTGgs~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~--~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~ 79 (259)
T PRK12745 3 STRPVALVTGGRRGIGLGIALALA-AGGFDLAINDRPDAEKLAATQQ--ELRALGVEVIFFPADVADLSAHEATLDAAQD 79 (259)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHH--HHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999999996867899999999999-8799899997986678999999--9984499489998468999999999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780465|r 207 D 207 (469)
Q Consensus 207 D 207 (469)
+
T Consensus 80 ~ 80 (259)
T PRK12745 80 A 80 (259)
T ss_pred H
T ss_conf 8
No 132
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=74.97 E-value=6.9 Score=19.57 Aligned_cols=12 Identities=25% Similarity=0.169 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHH
Q ss_conf 089999998752
Q gi|254780465|r 327 NSLLVKEAFYSL 338 (469)
Q Consensus 327 d~~~v~~~m~~l 338 (469)
++.++.+|.++-
T Consensus 267 nA~~lA~~L~~h 278 (391)
T PRK08133 267 NALELAEWLEAH 278 (391)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999999709
No 133
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=74.56 E-value=7.1 Score=19.50 Aligned_cols=161 Identities=12% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
-++|...|-+|++ --|.|.+.+|.. .+-+|++..-.. ...+ +.....+..++.+.+| .+.++|+++|.++...
T Consensus 7 L~gK~alVTG~s~-GIG~aiA~~la~-~Ga~Vvi~~r~~--~~l~--~~~~~l~~~~~~~~~Dvtd~~~v~~~v~~~~~~ 80 (251)
T PRK07523 7 LTGRRALITGSSQ-GIGYALAKGLAQ-AGAEVILNGRDA--AKLA--AAAESLKGSAHTLAFDVTDHDAVRAAIDAFEAE 80 (251)
T ss_pred CCCCEEEEECCCC-HHHHHHHHHHHH-CCCEEEEEECCH--HHHH--HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 8999899958366-999999999998-799999996998--9999--999981887279999579999999999999997
Q ss_pred HH----HHCCC------CCCCCCCCCHHHCCCCH---HHHHH-HHH-HHCC--CCCCEEEEEECCCHHHH-HHHHHHHHC
Q ss_conf 54----31358------31134556544401105---58999-998-7447--78873899634657887-886677750
Q gi|254780465|r 208 VF----FCHSV------NLSGINSINWARIMAQI---VYYFV-SSI-ALGS--PNRNISFSVPTGNFGDI-FAGYMAKMM 269 (469)
Q Consensus 208 ~~----~~~~~------~l~s~NSIN~~Ril~Q~---vyYf~-a~~-~~~~--~~~~i~f~VPtGNfGni-~Ag~~Ak~M 269 (469)
.. |...- .+.-...-.|-|++--- +|+.. +.+ .+.+ .++-|+++=-.|..|.- .+.|-|-|-
T Consensus 81 ~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~~~f~~~~~~~~~m~~~~~G~IInisS~~~~~~~~~~~~Y~asKa 160 (251)
T PRK07523 81 IGPIDILVNNAGMQHRTPLEDFPADAFERLLQTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGIAPYTATKG 160 (251)
T ss_pred CCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHCCCCCCCHHHHHHHH
T ss_conf 59986999898879999905599999999999973999999999989988639967999941576076899478999999
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 8987705872367633567753222010-23455656420
Q gi|254780465|r 270 GLPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 270 GLPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
|+- -|+|.+.. +|.+ .-.+.+++|-+
T Consensus 161 av~------------~lTr~lA~-e~a~~gIrVNaVaPG~ 187 (251)
T PRK07523 161 AVG------------NLTKGMAT-DWAKHGLQCNAIAPGY 187 (251)
T ss_pred HHH------------HHHHHHHH-HHCCCCEEEEEEEECC
T ss_conf 999------------99999999-9702094999997378
No 134
>pfam06253 MTTB Trimethylamine methyltransferase (MTTB). This family consists of several trimethylamine methyltransferase (MTTB) (EC:2.1.1.-) proteins from numerous Rhizobium and Methanosarcina species.
Probab=74.47 E-value=5.4 Score=20.34 Aligned_cols=189 Identities=19% Similarity=0.224 Sum_probs=96.5
Q ss_pred HHHHHCCCCCCEEEEE-------ECC---------CHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCC
Q ss_conf 9987447788738996-------346---------578878866777508987705872367633567753222010234
Q gi|254780465|r 237 SSIALGSPNRNISFSV-------PTG---------NFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300 (469)
Q Consensus 237 a~~~~~~~~~~i~f~V-------PtG---------NfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~ 300 (469)
++.|+.+++-|+.|.- =|| +..++.+|-+|+.-|||-.-. .
T Consensus 286 ~l~Qli~PGaPviyG~~~~~~DmrtGa~~~GtpE~~~~~~~~~QmAr~ygLP~r~~-~---------------------- 342 (505)
T pfam06253 286 ALTQLVRPGAPVIYGTFTSNVDMKSGAPAFGTPEPAKATLAAGQLARRYGLPYRTS-G---------------------- 342 (505)
T ss_pred HHHHHCCCCCCEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-C----------------------
T ss_conf 99997289997797887652105768888888899999999999999819986766-6----------------------
Q ss_pred CCCCCCCCCCCCHHHHHHHH----HHHHCCCHH-HHHHHHHHHCCC--CCCCCCCHHHHHHHCCCCCCCCCHHH-HHHHH
Q ss_conf 55656420013401378899----987097089-999998752026--51055202211000121342138899-99999
Q gi|254780465|r 301 METTSPAMDIQIPSNFERLL----FEISGRNSL-LVKEAFYSLENK--KYFRIDSEHLQKMSLSFSAKRASMED-VNSVI 372 (469)
Q Consensus 301 ~~T~SpsMDI~v~SNfERll----f~l~~~d~~-~v~~~m~~l~~~--g~~~i~~~~l~~l~~~f~s~svsDee-t~~~I 372 (469)
--|-|..+|.|.. +|..+ -.+.|.|-. .-..|++..-.- -+|-++++.+..+.....+-.|+|+. ..+.|
T Consensus 343 g~tdsk~~DaQAg--~E~~~t~~~~~laGaN~i~h~aG~le~~l~~s~Ek~v~D~e~lg~~~r~~~gi~v~d~tla~d~i 420 (505)
T pfam06253 343 GMSASKLPDAQAA--YESVMALWGAVLAGANLVYHAAGWLEGGLTCSYEKFIIDIDMLQHMAEFLRGIPVDEDALAFDAI 420 (505)
T ss_pred CCCCCCCCCHHHH--HHHHHHHHHHHHCCCCEEEECHHHHHCCHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 6644688224689--99999999999649862333675540101027999975299999999983699989326579999
Q ss_pred HHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEEECCC--CC--CCHHHHHHHHCCCCCCCHHHHHHHCCCCCEEECC
Q ss_conf 9999863959838339999999998747998399997188--43--4988899980879888988988741721101068
Q gi|254780465|r 373 KSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAH--PS--KFPDTVKAASGIVPDCPISLEQMMRRPENCKVMN 448 (469)
Q Consensus 373 k~~y~~~gyiiDPHTAvG~~aa~~~~~~~~~p~VvLATAH--Pa--KFpe~V~~Aig~~~~~P~~L~~l~~k~e~~~~l~ 448 (469)
+++=-.-+|+-.|||---+.- .--.|.+.--..+ |. -=+++...|.. +.++++..-+. ..|+
T Consensus 421 ~~vgpgGhfLg~~hT~~~~~~------~~~~P~l~dr~~~e~W~~~G~~~~~~rA~~-------~~~~iL~~~~~-p~ld 486 (505)
T pfam06253 421 REVGPGGHFLGTEHTLARYQT------AFYQPALSDWNNFEQWNEAGSKDALERANR-------IWKRALAEYEE-PALD 486 (505)
T ss_pred HHHCCCCCCCCCHHHHHHHHH------CCCCCCCCCCCCHHHHHHCCCCCHHHHHHH-------HHHHHHHHCCC-CCCC
T ss_conf 975899876797899999743------525886645359878987799329999999-------99999972689-9999
Q ss_pred CCH-HHHHHHHHHHHHH
Q ss_conf 999-9999999961155
Q gi|254780465|r 449 KNI-DEIKKFIKKRNME 464 (469)
Q Consensus 449 nd~-~~ik~fI~~k~~~ 464 (469)
+++ +++++||.++..|
T Consensus 487 ~~i~~~L~~~v~~r~~e 503 (505)
T pfam06253 487 PAIDEALRDFIARRKAE 503 (505)
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999999863
No 135
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=74.40 E-value=7.1 Score=19.48 Aligned_cols=297 Identities=16% Similarity=0.155 Sum_probs=152.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCEEEECCC---------CCEEEEECCC--CCCCCCCCHHHHHHHHHHHHHHCCCCCE
Q ss_conf 8998999999999863047667860477248---------8254662138--9812068238889999999973179820
Q gi|254780465|r 66 EIKSSKLRDIVNRSYHCFRNAAVTPLIQLNA---------NEFLLELFHG--PTLSFKDIAMQFIAELMDHILEERDHYI 134 (469)
Q Consensus 66 ~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~---------~~~vlELfHG--PT~aFKD~a~q~l~~~~~~~l~~~~~~~ 134 (469)
+|+++. .+.|..+.. .+||.+-.+ +.|. -+.| ||+|+|=--.- ++ -|+.++.+-+-
T Consensus 63 ~IP~Ev-----~e~Y~~~gR--PTPL~RA~~LE~~L~tparIYy--K~Eg~tptGSHKiNTAl--Aq--aYyak~eg~~r 129 (432)
T COG1350 63 KIPEEV-----REAYLQIGR--PTPLIRAKNLEEALGTPARIYY--KYEGVTPTGSHKINTAL--AQ--AYYAKKEGAKR 129 (432)
T ss_pred CCCHHH-----HHHHHHHCC--CCCHHHHHHHHHHHCCCCEEEE--EECCCCCCCCCCCCHHH--HH--HHHHHHCCCEE
T ss_conf 686999-----999997279--9721336459998499807999--60454788877723499--99--99987527303
Q ss_pred EEEECC-CCCHHHHHHHHHCCCCCCEEEEECCCCCCC---HHHHCCCEEECCCCEEEEEEC----------------CCH
Q ss_conf 799716-654046799986166785599973577676---033213113447870899717----------------965
Q gi|254780465|r 135 TIVGAT-SGDTGAAAIKAFAGKKRINMYILFPEGRIS---VVQQKQMTTSEASNINVIAVQ----------------SSF 194 (469)
Q Consensus 135 ~il~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g~vS---~~Q~~qmtt~~~~Nv~~i~v~----------------G~F 194 (469)
+.+-| -|-=|+|..-|.+ .-++++-|+-- ++| ..+|+-|-..-|.+|++-.-+ |+.
T Consensus 130 -l~TETGAGQWGsAlslA~a-lf~lk~~V~Mv--r~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSL 205 (432)
T COG1350 130 -LTTETGAGQWGSALSLAAA-LFGLKATVFMV--RVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSL 205 (432)
T ss_pred -EECCCCCCHHHHHHHHHHH-HHCCEEEEEEE--EHHHHCCHHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCCCCCCHH
T ss_conf -4304577517889999998-74851499998--6232105299999998587420697621378899984196998616
Q ss_pred HHH-HHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEE---EEE-CCCHHHHHHHHHHHHC
Q ss_conf 888-99999975015431358311345565444011055899999874477887389---963-4657887886677750
Q gi|254780465|r 195 DDC-QKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISF---SVP-TGNFGDIFAGYMAKMM 269 (469)
Q Consensus 195 DDc-q~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f---~VP-tGNfGni~Ag~~Ak~M 269 (469)
-=+ -..|..+..++ +.++.++|+ -=.-||-|.|--..+-.|+...++..++ ||- ..|||-++=-+++-+.
T Consensus 206 GIAISEAiE~al~~~--~~kY~lGSV---lnhvllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l 280 (432)
T COG1350 206 GIAISEAIEYALKNE--NTKYSLGSV---LNHVLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKL 280 (432)
T ss_pred HHHHHHHHHHHHHCC--CCEECCHHH---HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 687899999998488--843521678---789999888874879999996388998799941687764221340146553
Q ss_pred -CCCCCEEEEECCCCCHHHHHHHCCCHHCC-CCCCCCCCC--C-----CCCCHHH-HHHHHHHHHCCCHHHHHHHHHHHC
Q ss_conf -89877058723676335677532220102-345565642--0-----0134013-788999870970899999987520
Q gi|254780465|r 270 -GLPIEKLIIATNENDTLVRMFDMGMYRPE-IVMETTSPA--M-----DIQIPSN-FERLLFEISGRNSLLVKEAFYSLE 339 (469)
Q Consensus 270 -GLPI~kli~AtN~NdiL~rf~~tG~y~~~-~~~~T~Sps--M-----DI~v~SN-fERllf~l~~~d~~~v~~~m~~l~ 339 (469)
|=-.-++|++.-+-- --++.|+|+.+ .-..-+.|- | |-..|.- =--|- +.+++..++-+++.
T Consensus 281 ~g~~~~~fiAvep~a~---P~lT~GeY~YD~gDtagltPllKMyTlGhd~vpPpihAgGLR---YHG~aPtls~L~~~-- 352 (432)
T COG1350 281 RGKKETRFIAVEPKAC---PKLTKGEYRYDFGDTAGLTPLLKMYTLGHDYVPPPIHAGGLR---YHGVAPTLSLLVKE-- 352 (432)
T ss_pred CCCCEEEEEEECCCCC---CCCCCCEEECCCCCHHCCCHHHHHHCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHC--
T ss_conf 6775169998677558---732465031357850023243542104777668971246511---15767189999974--
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHH----HHHCCCCCEEEE
Q ss_conf 265105520221100012134213889999999999986395983833999999999----874799839999
Q gi|254780465|r 340 NKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALA----CRKSSSTPMVTL 408 (469)
Q Consensus 340 ~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~----~~~~~~~p~VvL 408 (469)
....+-..+.+|+.+..+.+-+..|++--|-||-++.++.+ .+..+...+|+.
T Consensus 353 ----------------Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~geekvI~f 409 (432)
T COG1350 353 ----------------GIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILF 409 (432)
T ss_pred ----------------CCCCCEECCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf ----------------831112167689999999999846876687203168999999986320585379999
No 136
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase; InterPro: IPR010081 This small family includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 0dentical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase)..
Probab=73.34 E-value=7.6 Score=19.31 Aligned_cols=229 Identities=13% Similarity=0.120 Sum_probs=127.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHH-H
Q ss_conf 820799716654046799986166785599973577676033213113447870899717965888999999750154-3
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVF-F 210 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~-~ 210 (469)
+.-+-++||-|+-|--++.|.. +=+.+.+|+-|||..-...+ -.. ....-++=-|=|+|||=+|..+.-...+ +
T Consensus 93 ~~~tF~TaTDGNHGRGVAWAA~-qLG~kaVvyMPKGS~~~R~e--nI~--~~GAec~itd~NYDd~VRla~~mAq~~gnw 167 (378)
T TIGR01747 93 KDATFVTATDGNHGRGVAWAAE-QLGQKAVVYMPKGSAQERAE--NIR--KEGAECTITDLNYDDAVRLANKMAQEKGNW 167 (378)
T ss_pred CCEEEEEECCCCCCCHHHHHHH-HCCCCEEEECCCCCHHHHHH--HHH--CCCCEEEEEECCCCHHHHHHHHHHHHCCCE
T ss_conf 2506875168997625899997-54874388747887467899--986--079879994057625799988985322880
Q ss_pred H--CCCCCCCCCCCCHHHCCCC--HHHHHHHHHHHCCCCC--CEEEEE--ECCCHHHHHHHHHHHHCCC-CCCEEEEECC
Q ss_conf 1--3583113455654440110--5589999987447788--738996--3465788788667775089-8770587236
Q gi|254780465|r 211 C--HSVNLSGINSINWARIMAQ--IVYYFVSSIALGSPNR--NISFSV--PTGNFGDIFAGYMAKMMGL-PIEKLIIATN 281 (469)
Q Consensus 211 ~--~~~~l~s~NSIN~~Ril~Q--~vyYf~a~~~~~~~~~--~i~f~V--PtGNfGni~Ag~~Ak~MGL-PI~kli~AtN 281 (469)
. .-..=..-.- |--++=| ..--..|+-|+.+.+. |--+.| =.|.|.=--=||++-+|-= |.+-+||=-.
T Consensus 168 v~vQDTAW~GYek--IPTWIMQGY~TlA~EA~eQlre~gS~~PtHv~lQAGVGs~AG~V~GYfv~~~~en~p~~ivVEp~ 245 (378)
T TIGR01747 168 VLVQDTAWEGYEK--IPTWIMQGYATLAVEAVEQLREFGSELPTHVLLQAGVGSLAGAVLGYFVDAYSENIPIIIVVEPD 245 (378)
T ss_pred EEEECCCCCCCCC--CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 6986356678765--88322333678999999999982789873355542236676789988875148998748997774
Q ss_pred CCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCC
Q ss_conf 76335677532220102345565642001340137889998709708999999875202651055202211000121342
Q gi|254780465|r 282 ENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAK 361 (469)
Q Consensus 282 ~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~ 361 (469)
+-|=|+| |--||=+-+.|. . +| ...+|-.|.---.=.|+=++++.--..|.|
T Consensus 246 ~AdClYq----------------Savk~DG~i~~V-------~-GD---maTIMAGLACGEPN~isw~Ilrn~ts~FiS- 297 (378)
T TIGR01747 246 KADCLYQ----------------SAVKDDGEIRFV-------D-GD---MATIMAGLACGEPNIISWEILRNNTSFFIS- 297 (378)
T ss_pred CCCCHHH----------------CCCCCCCCEEEE-------C-CC---HHHHHHHHHCCCCCCCCHHHHHCCCCEEEE-
T ss_conf 2382011----------------020338864364-------6-74---798862331588887754877327642661-
Q ss_pred CCCHHHHHHHHHHHHH-----HCCCEECCCHHHHHHHHHH
Q ss_conf 1388999999999998-----6395983833999999999
Q gi|254780465|r 362 RASMEDVNSVIKSVLE-----KSNYLVDPHTAVGIHAALA 396 (469)
Q Consensus 362 svsDeet~~~Ik~~y~-----~~gyiiDPHTAvG~~aa~~ 396 (469)
++|---.+-||-.-. +...|-==-.|||+.....
T Consensus 298 -a~D~vaakGMR~lgaP~~gtDp~~iSGESGAvg~Glla~ 336 (378)
T TIGR01747 298 -ADDSVAAKGMRVLGAPLKGTDPRVISGESGAVGLGLLAE 336 (378)
T ss_pred -CCHHHHHCCCEEECCCCCCCCCCEEECCHHHHHHHHHHH
T ss_conf -424675215543238776768845714505899999999
No 137
>TIGR01098 3A0109s03R phosphonate ABC transporter, periplasmic phosphonate-binding protein; InterPro: IPR005770 Bacterial binding protein-dependent transport systems , are multicomponent systems typically composed of a periplasmic substrate-binding protein, one or two reciprocally homologous integral inner-membrane proteins and one or two peripheral membrane ATP-binding proteins that couple energy to the active transport system. The integral inner-membrane proteins translocate the substrate across the membrane. It has been shown , that most of these proteins contain a conserved region located about 80 to 100 residues from their C-terminal extremity. This region seems to be located in a cytoplasmic loop between two transmembrane domains. Apart from the conserved region, the sequence of these proteins is quite divergent, and they have a variable number of transmembrane helices. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake. ; GO: 0015604 phosphonate transmembrane transporter activity, 0015716 phosphonate transport, 0030288 outer membrane-bounded periplasmic space.
Probab=73.17 E-value=5.3 Score=20.36 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 981206823888999999997317982079971665404679998616678559997357767603321
Q gi|254780465|r 107 PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK 175 (469)
Q Consensus 107 PT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~ 175 (469)
||-+=..+.-++.+ |.+|.-++-+-++.+.++|. = +|.|+|++ ..+|++--|=|.+.+.-.++.
T Consensus 59 P~e~~~~~~~~~~p-L~~~Lek~Lg~kV~~~~~~d--Y-~a~IEamr-~g~~D~a~~g~~sY~~A~~~~ 122 (299)
T TIGR01098 59 PGENASNLARRWEP-LKDYLEKKLGIKVELFVATD--Y-SAVIEAMR-FGRVDIAWFGPSSYVLAHRRA 122 (299)
T ss_pred CCCCHHHHHHHHHH-HHHHHHHHCCCCEEEEEECC--C-CCEEEEEC-CCCEEEEEECCCHHHEEEECC
T ss_conf 48875577776689-99988875588679986168--3-10334232-680789834785123220013
No 138
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.78 E-value=7.8 Score=19.22 Aligned_cols=78 Identities=14% Similarity=0.137 Sum_probs=47.2
Q ss_pred CCCCCEEEEECCC-CCHHHHHHHHHCCCCCCEEEEECCCC-C-----CCH---HH-HCCCEEECCCCEEEEEEC-CCHHH
Q ss_conf 1798207997166-54046799986166785599973577-6-----760---33-213113447870899717-96588
Q gi|254780465|r 129 ERDHYITIVGATS-GDTGAAAIKAFAGKKRINMYILFPEG-R-----ISV---VQ-QKQMTTSEASNINVIAVQ-SSFDD 196 (469)
Q Consensus 129 ~~~~~~~il~ATS-GDTGsAa~~a~~~~~~i~v~vlyP~g-~-----vS~---~Q-~~qmtt~~~~Nv~~i~v~-G~FDD 196 (469)
-.+|...|-+|+. |--|.|.+..|. ..+-+|++.|=.. . ... .+ ..+.....+..++.+.+| .+-++
T Consensus 3 L~gKvalVTGasr~~GIG~aiA~~la-~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~ 81 (257)
T PRK12748 3 LMKKIAIVTGASRLNGIGAAICRVLA-QKGIDIFFTYWSQYDKAMPWGMHDKEPFLLKEEIESYGVRCEMLEIDLSQSYS 81 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 99988999288999854999999999-87999999707525544342346067999999999659828999846899999
Q ss_pred HHHHHHHHHCC
Q ss_conf 89999997501
Q gi|254780465|r 197 CQKIVKNLFSD 207 (469)
Q Consensus 197 cq~~Vk~~f~D 207 (469)
|+++++++...
T Consensus 82 ~~~~~~~~~~~ 92 (257)
T PRK12748 82 PNRLFYMVSER 92 (257)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999997
No 139
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=72.74 E-value=7.8 Score=19.21 Aligned_cols=74 Identities=7% Similarity=0.132 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|. .+++..|+--|.|.+..|. ..+-+|++..=.....+..+ +... .+.+++.+.+| .+.++|+++++++...
T Consensus 7 ~gKv-alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~~ 81 (260)
T PRK12823 7 AGKV-AVVTGAAQGIGRGVALRAA-AEGARVVLVDRSELVHEVAA-ELVA-AGGEALALTADLETYAGAQAVMAAAVEA 81 (260)
T ss_pred CCCE-EEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9998-9994886789999999999-87999999969468999999-9985-4994899981268858999999999998
No 140
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=72.57 E-value=7.9 Score=19.18 Aligned_cols=75 Identities=8% Similarity=0.119 Sum_probs=47.3
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 3179820799716654046799986166785599973577-676033213113447870899717-96588899999975
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
.-++|.. |++..|+--|.|.+..|. ..+-+|++.+-.. +..+.++ ++. ..+.+++.+.+| .+-++|+++|+++.
T Consensus 9 ~L~gKva-lVTG~s~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~-~l~-~~g~~~~~~~~Dv~~~~~v~~~v~~~~ 84 (259)
T PRK08213 9 DLTGKTA-LVTGGSRGLGLQIAEALG-EAGARVVLSARKAEELEEAAA-HLE-ALGIDALWLAADVADEADIERLAEETL 84 (259)
T ss_pred CCCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHH-HCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999989-994877689999999999-869999999798899999999-999-549958999826899999999999999
Q ss_pred C
Q ss_conf 0
Q gi|254780465|r 206 S 206 (469)
Q Consensus 206 ~ 206 (469)
.
T Consensus 85 ~ 85 (259)
T PRK08213 85 E 85 (259)
T ss_pred H
T ss_conf 9
No 141
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=72.48 E-value=7.9 Score=19.17 Aligned_cols=13 Identities=23% Similarity=0.087 Sum_probs=7.2
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7089999998752
Q gi|254780465|r 326 RNSLLVKEAFYSL 338 (469)
Q Consensus 326 ~d~~~v~~~m~~l 338 (469)
.++.++.++.++-
T Consensus 263 ~nA~~lA~~L~~h 275 (386)
T PRK07811 263 ENAEAVAEFLDGH 275 (386)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999729
No 142
>TIGR00865 bcl-2 Apoptosis regulator; InterPro: IPR004725 Bcl-X is a dominant regulator of programmed cell death in mammalian cells. The long form (Bcl-X(L)) displays cell death repressor activity, but the short isoform (Bcl-X(S)) and the b-isoform (Bcl-Xb) promote cell death. Bcl-X(L), Bcl-X(S) and Bcl-Xb are three isoforms derived by alternative RNA splicing. Bcl-X(S) forms heterodimers with Bcl-2. Homologues of Bcl-X include the rat Bax and mouse Bak proteins which also influence apoptosis.; GO: 0042981 regulation of apoptosis, 0016020 membrane.
Probab=72.40 E-value=2.8 Score=22.30 Aligned_cols=37 Identities=32% Similarity=0.760 Sum_probs=21.9
Q ss_pred HHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 999999750154313583113455654440110558999998744778873
Q gi|254780465|r 198 QKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNI 248 (469)
Q Consensus 198 q~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i 248 (469)
+++|.++|.| -.+|||||++ .++|=..+-+..-++++
T Consensus 133 ~~V~~eLF~D------------G~~NWGRiVA--fF~Fgg~Lcv~s~~~~~ 169 (243)
T TIGR00865 133 EQVVAELFRD------------GNVNWGRIVA--FFSFGGALCVESVNKEM 169 (243)
T ss_pred HHHHHHHHHC------------CCCCHHHHHH--HHHHHHHHHHHHHHHHC
T ss_conf 9999998514------------8974688999--99979999999974113
No 143
>PRK09028 cystathionine beta-lyase; Provisional
Probab=72.11 E-value=8.1 Score=19.11 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=7.9
Q ss_pred CCHHHHHHHHHHHCC
Q ss_conf 708999999875202
Q gi|254780465|r 326 RNSLLVKEAFYSLEN 340 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~ 340 (469)
.++..+.+++++-..
T Consensus 265 ~nA~~vA~~L~~hp~ 279 (394)
T PRK09028 265 KNALKVANWLATRPE 279 (394)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999860999
No 144
>pfam10128 OpcA_G6PD_assem Glucose-6-phosphate dehydrogenase subunit. Members of this family are found in various prokaryotic OpcA and glucose-6-phosphate dehydrogenase proteins. The exact function of the domain is, as yet, unknown.
Probab=71.69 E-value=5.6 Score=20.21 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=35.8
Q ss_pred CCCCCCHHHCCCCHHHHHHHHHHHCC-C--------CCCEEEEEECCCH--HHHHHHHHHHHCCCCCCEEE
Q ss_conf 34556544401105589999987447-7--------8873899634657--88788667775089877058
Q gi|254780465|r 218 GINSINWARIMAQIVYYFVSSIALGS-P--------NRNISFSVPTGNF--GDIFAGYMAKMMGLPIEKLI 277 (469)
Q Consensus 218 s~NSIN~~Ril~Q~vyYf~a~~~~~~-~--------~~~i~f~VPtGNf--Gni~Ag~~Ak~MGLPI~kli 277 (469)
..+=.||.||-+== -...+..+ + -..+.+..+.||- +.++|||+|-++|-|+.+..
T Consensus 119 gd~DL~WtRlt~WR----~llA~afD~p~~~~~l~~v~~v~V~~~~~~p~~a~LlagWLa~rLg~~v~~~~ 185 (267)
T pfam10128 119 GDTDLNWTRLTPWR----ELLAAAFDPPPRRPALSHVTSVTVDGEGDNPTQALLLAGWLASRLGWPVLRAV 185 (267)
T ss_pred CCCCCCHHHHHHHH----HHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 87444104344899----99999729965432115604999981588902899999999973599648875
No 145
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=71.52 E-value=8.3 Score=19.02 Aligned_cols=73 Identities=11% Similarity=0.141 Sum_probs=46.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 8207997166540467999861667855999735776-76033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-ISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.|..+++..|+--|.|.+..|.. .+.+|++..-... ..+. ..++. ..+.+++.+.+| .+-++|+.+++++...
T Consensus 6 gK~alITGgs~GIG~aia~~la~-~G~~V~~~~r~~~~~~~~-~~~l~-~~g~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (253)
T PRK12826 6 GRVALVTGAARGIGRAIAVRFAA-DGADVIVVDICGQAAAAT-AELVA-AAGGKARAYQVDVRDRAALKALVAAGVER 80 (253)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH-HHHHH-HHCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 98899948977899999999998-799899998988999999-99998-50995899995179999999999999998
No 146
>PRK06125 short chain dehydrogenase; Provisional
Probab=71.11 E-value=8.5 Score=18.96 Aligned_cols=73 Identities=16% Similarity=0.282 Sum_probs=46.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHH
Q ss_conf 179820799716654046799986166785599973577-676033213113447870899717-9658889999997
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNL 204 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~ 204 (469)
-++|.. +++..|+--|.|.+..|. .++.+|++..-.. +..... ..+....+.++..+..| .+-+++++++++.
T Consensus 5 l~gK~a-lITG~s~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~-~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (259)
T PRK06125 5 LAGKRV-LITGASKGIGAAAAEAFA-AEGCHLVLAARDADALAALA-ADLRAAHGVDVAVHALDLSSPEAREQLAAEA 79 (259)
T ss_pred CCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHH-HHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 699989-996877689999999999-87998999979889999999-9998700986699988899999999999985
No 147
>PRK06940 short chain dehydrogenase; Provisional
Probab=70.81 E-value=8.6 Score=18.92 Aligned_cols=70 Identities=11% Similarity=0.168 Sum_probs=44.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHH
Q ss_conf 7982079971665404679998616678559997357-7676033213113447870899717-9658889999997
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPE-GRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNL 204 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~-g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~ 204 (469)
-++++.|+++++| -|.|.+..+. .+-++++.-=. .+.....+ ++. ..+.+++.+.+| .+-++|+.+++.+
T Consensus 3 L~~kV~v~tGa~G-IG~aiA~~la--~Ga~vvi~~~~~~~l~~~~~-~l~-~~g~~~~~~~~Dvs~~~~v~~l~~~~ 74 (277)
T PRK06940 3 MSKEVVVVIGAGG-MGQAIARRVG--SGKTVLLADYNEENLQAVAR-TLR-EAGFDVITQQVDVSSRESVKALAQTA 74 (277)
T ss_pred CCCCEEEECCCCH-HHHHHHHHHH--HCCEEEEEECCHHHHHHHHH-HHH-HCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 8992999978169-9999999998--19989999898899999999-987-22882999982579989999999999
No 148
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=70.75 E-value=8.6 Score=18.91 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=48.4
Q ss_pred CCCCCCCCCCHHHHHHH-HHHHHHHCCCCCEEEEECCCCC---HH-HH---HHHHHCCCCCCEEEEECCCCCCCHHHHCC
Q ss_conf 38981206823888999-9999973179820799716654---04-67---99986166785599973577676033213
Q gi|254780465|r 105 HGPTLSFKDIAMQFIAE-LMDHILEERDHYITIVGATSGD---TG-AA---AIKAFAGKKRINMYILFPEGRISVVQQKQ 176 (469)
Q Consensus 105 HGPT~aFKD~a~q~l~~-~~~~~l~~~~~~~~il~ATSGD---TG-sA---a~~a~~~~~~i~v~vlyP~g~vS~~Q~~q 176 (469)
.|-| +-.-|++.... ++......+...-.+++=|.|. .+ .. .+... ...++.++..== +.+..-|-.+
T Consensus 77 ~G~T--~tg~AL~~a~~~~f~~~~g~R~~~kvlivlTDG~s~~~~~~~~~~~a~~l-r~~gV~i~aVGV-~~~~~~eL~~ 152 (185)
T cd01474 77 SGQT--YIHEGLENANEQIFNRNGGGRETVSVIIALTDGQLLLNGHKYPEHEAKLS-RKLGAIVYCVGV-TDFLKSQLIN 152 (185)
T ss_pred CCCC--HHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHH-HHCCCEEEEEEC-CCCCHHHHHH
T ss_conf 8937--89999999999750323699887628999932665676214179999999-978948999971-6259999998
Q ss_pred CEEECCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 11344787089971796588899999975
Q gi|254780465|r 177 MTTSEASNINVIAVQSSFDDCQKIVKNLF 205 (469)
Q Consensus 177 mtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f 205 (469)
|++. . =|++.++.+||+.+.++.++.
T Consensus 153 IAs~-p--~~vf~v~~~F~~L~~i~~~l~ 178 (185)
T cd01474 153 IADS-K--EYVFPVTSGFQALSGIIESVV 178 (185)
T ss_pred HHCC-C--CEEEECCCCHHHHHHHHHHHH
T ss_conf 7199-8--648983475777899999999
No 149
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=70.68 E-value=8.7 Score=18.90 Aligned_cols=17 Identities=18% Similarity=0.321 Sum_probs=7.0
Q ss_pred CEEECCCCHHHHHHHHH
Q ss_conf 10106899999999999
Q gi|254780465|r 443 NCKVMNKNIDEIKKFIK 459 (469)
Q Consensus 443 ~~~~l~nd~~~ik~fI~ 459 (469)
....+.-.+|.+++.|.
T Consensus 398 ~liRlSVGlEd~eDLi~ 414 (424)
T PRK06084 398 DMVRLSIGIEHIDDIIA 414 (424)
T ss_pred CEEEEEECCCCHHHHHH
T ss_conf 96999762299999999
No 150
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=70.64 E-value=8.7 Score=18.90 Aligned_cols=75 Identities=9% Similarity=0.001 Sum_probs=44.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 982079971665404679998616678559997357-7676033213113447870899717-9658889999997501
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPE-GRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~-g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
+|. .|++..|+--|.|.+..|.. .+.+|++..=. .+.....+.--......+++.+.+| .+.++|+++++++...
T Consensus 2 nKv-alITG~s~GIG~aia~~la~-~Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 78 (259)
T PRK12384 2 NKV-AVVIGGGQTLGAFLCHGLAE-EGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEI 78 (259)
T ss_pred CCE-EEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 978-99946886899999999998-799999997988999999999986248860899983279999999999999998
No 151
>pfam00452 Bcl-2 Apoptosis regulator proteins, Bcl-2 family.
Probab=70.45 E-value=4.5 Score=20.87 Aligned_cols=31 Identities=35% Similarity=0.806 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHH
Q ss_conf 5888999999750154313583113455654440110558999998
Q gi|254780465|r 194 FDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSI 239 (469)
Q Consensus 194 FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~ 239 (469)
.+-.+.+++++|.| -||||||++ .|+|-+.+
T Consensus 32 ~~~f~~Va~elF~d-------------ginWGRIva--l~~F~~~l 62 (100)
T pfam00452 32 YEAFNEVAEELFSD-------------GINWGRIVA--LLAFGGAL 62 (100)
T ss_pred HHHHHHHHHHHHHC-------------CCCHHHHHH--HHHHHHHH
T ss_conf 99999999999867-------------986999999--99999999
No 152
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=69.91 E-value=9 Score=18.79 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=47.5
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 3179820799716654046799986166785599973577-676033213113447870899717-96588899999975
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
.-++|.. +++..++--|.|.+.+|. ..+-+|++..-.. +..+..+ ++.. .+..++.+.+| .+.++++.+|+++.
T Consensus 6 ~L~gK~a-lVTG~~~GIG~aiA~~la-~~Ga~Vvi~~~~~~~~~~~~~-~l~~-~g~~~~~~~~Dvtd~~~v~~~v~~~~ 81 (254)
T PRK08085 6 SLAGKNI-LITGSAQGIGFLLATGLA-EYGAEIIINDITAERAEKAVA-KLRQ-EGIKAHAAAFNVTHKQEIEAAIEHIE 81 (254)
T ss_pred CCCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8999989-996856789999999999-869999999698899999999-9984-49818999826899999999999999
Q ss_pred CC
Q ss_conf 01
Q gi|254780465|r 206 SD 207 (469)
Q Consensus 206 ~D 207 (469)
.+
T Consensus 82 ~~ 83 (254)
T PRK08085 82 KD 83 (254)
T ss_pred HH
T ss_conf 98
No 153
>PRK07074 short chain dehydrogenase; Provisional
Probab=69.72 E-value=9.1 Score=18.76 Aligned_cols=68 Identities=10% Similarity=0.127 Sum_probs=44.7
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHH
Q ss_conf 20799716654046799986166785599973577676033213113447870899717-9658889999997
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNL 204 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~ 204 (469)
|..+++..++--|.|.+..|.. .+-+|++..= -.+--++......+.++..+.+| .+.|+++.+++.+
T Consensus 3 KvalITGgs~GIG~aia~~la~-~Ga~V~~~~r---~~~~~~~~~~~l~~~~~~~~~~Dv~~~~~~~~~~~~i 71 (256)
T PRK07074 3 RTALVTGAAGGIGQALARRFLA-AGDRVLALDI---DRAALAAFVDALGDAAVAPVICDLTDAASVERLAAAL 71 (256)
T ss_pred CEEEEECCCCHHHHHHHHHHHH-CCCEEEEEEC---CHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 8899988468999999999998-6999999979---8899999999826997799997279999999999999
No 154
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=69.50 E-value=9.2 Score=18.73 Aligned_cols=73 Identities=19% Similarity=0.300 Sum_probs=46.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577--676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.. +++..|+.-|.|.+..|. ..+.++++.+-.. +..+.++ ++.. .+.+++.+.+| .+-++++++++++-.
T Consensus 4 ~gK~v-lITGgs~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~-~l~~-~~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (247)
T PRK05565 4 MGKVA-IVTGASGGIGRAIAELLA-KEGAKVVIAYDKNEEAANELLE-EIKE-VGGDAIAVKADVSSEDDVENLVEQIVE 79 (247)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99889-993784589999999999-8799899981799899999999-9996-399089998358999999999999999
No 155
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=69.18 E-value=9.3 Score=18.69 Aligned_cols=75 Identities=8% Similarity=0.179 Sum_probs=47.1
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC-CHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7982079971665404679998616678559997357767-6033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI-SVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v-S~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.. +++..|+--|.|.+..|. ..+-+|++.|-...- .+-..+.+....+..++.+.+| .+.++|+.+++++..
T Consensus 7 ~gK~a-lVTGgs~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~~~~~~~~i~~ 83 (260)
T PRK08416 7 KGKTL-VISGGTRGIGKAIVYEFA-QSGVNIAFTYNSNVEEADKIAQDLEKKYGIKARAYPLNILEPETYKELFKKIDA 83 (260)
T ss_pred CCCEE-EEECCCHHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99989-996734099999999999-879999998599889999999999884198369997788999999999999999
No 156
>PRK07109 short chain dehydrogenase; Provisional
Probab=69.11 E-value=9.3 Score=18.68 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=46.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 179820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.-..++.|++..|+--|.|.+..|. ..+-++++.--.. +..++.+ +.. ..|.++..+.+| .+.++|+.++.++..
T Consensus 5 ~l~~KvVvITGASsGIGra~A~~fA-~~Ga~Vvl~aR~~~~L~~~a~-e~~-~~G~~~~~~~~DVsd~~~v~~~~~~~~~ 81 (338)
T PRK07109 5 PLGRQVVVITGASAGVGRATARAFA-RRGAKVVLLARGEEGLEGLAA-EIR-AAGGEALAVVADVADAEAVQAAADRAEE 81 (338)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHH-HCCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 0698989994843499999999999-879989999899999999999-999-6398189998017999999999999999
No 157
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=69.11 E-value=9.3 Score=18.68 Aligned_cols=13 Identities=0% Similarity=0.038 Sum_probs=7.1
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 7089999998752
Q gi|254780465|r 326 RNSLLVKEAFYSL 338 (469)
Q Consensus 326 ~d~~~v~~~m~~l 338 (469)
.|+.++.++.++-
T Consensus 270 ~nA~~iA~~L~~h 282 (397)
T PRK07504 270 ESAAAIADFLAGH 282 (397)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999738
No 158
>PRK00073 pgk phosphoglycerate kinase; Provisional
Probab=68.82 E-value=9.4 Score=18.64 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=30.7
Q ss_pred CCCCCC-CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 898120-6823888999999997317982079971665404679998616678559997
Q gi|254780465|r 106 GPTLSF-KDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 106 GPT~aF-KD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
-|.+.+ +++.+...+..++..|.++ +..+- .-.|..|.++.+..+.=++++|
T Consensus 61 RPkg~~~~~~SL~pva~~L~~~L~~~---V~f~~---d~~g~~~~~~i~~l~~G~I~LL 113 (391)
T PRK00073 61 RPKGEGDEEFSLAPVAKRLSELLGKP---VKFVD---DCIGEEAREAIAALKDGEVLLL 113 (391)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCC---EEECC---CCCCHHHHHHHHHCCCCCEEEE
T ss_conf 99999896568799999999986117---04046---7788789999971789979987
No 159
>PRK05650 short chain dehydrogenase; Provisional
Probab=68.72 E-value=9.5 Score=18.62 Aligned_cols=70 Identities=11% Similarity=0.073 Sum_probs=44.7
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 2079971665404679998616678559997357-7676033213113447870899717-965888999999750
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPE-GRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~-g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
|+.|-+|+|| -|.|.+..|. ..+.++++..-. .+..+. .+.....+.+++.+.+| ++-++|+.+++++-.
T Consensus 2 rVlITGassG-IG~alA~~la-~~G~~V~l~~r~~~~l~~~--~~~l~~~g~~~~~~~~Dvt~~~~~~~~~~~v~~ 73 (270)
T PRK05650 2 RVMITGAASG-LGRAIALRWA-REGWRLALADVNEEGGEET--LKELREAGGDGFYQRCDVRDYSQLTALAQACEE 73 (270)
T ss_pred EEEEECCCCH-HHHHHHHHHH-HCCCEEEEEECCHHHHHHH--HHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7999887649-9999999999-8899899997988999999--999984499289998458999999999999999
No 160
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=68.68 E-value=9.5 Score=18.62 Aligned_cols=72 Identities=14% Similarity=0.249 Sum_probs=46.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++| ..+++..|+--|.|.+..|. ..+-+|++.--. -..+++ +....+.++..+.+| .+.|+++++|+++...
T Consensus 4 ~gK-valITGgs~GIG~aia~~~a-~~Ga~V~i~~r~--~~~l~~--~~~~~g~~~~~~~~Dv~~~~~~~~~v~~~~~~ 76 (262)
T TIGR03325 4 KGE-VVLVTGGASGLGRAIVDRFV-AEGARVAVLDKS--AAGLQE--LEAAHGDAVVGVEGDVRSLDDHKEAVARCVAA 76 (262)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECC--HHHHHH--HHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 998-89990678789999999999-879999999899--899999--99867996799984579999999999999998
No 161
>PRK07890 short chain dehydrogenase; Provisional
Probab=68.44 E-value=9.6 Score=18.59 Aligned_cols=73 Identities=11% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++| ..+++..|+--|.|.+..|. ..+-+|++..-.. +..+..+ ++.. .+..++.+..| .+.++|+++|+++..
T Consensus 4 ~gK-~alVTG~s~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~-~i~~-~g~~~~~~~~Dv~~~~~~~~~v~~~~~ 78 (258)
T PRK07890 4 KDK-VVVVSGVGPGLGTTLAVRAA-REGADVVLAARTAERLDEVAK-QIDD-LGRRALAVVTDITDEAQVANLVDAALE 78 (258)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 998-89996856589999999999-879989999798999999999-9996-499589998169999999999999999
No 162
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=68.04 E-value=9.8 Score=18.53 Aligned_cols=16 Identities=13% Similarity=0.160 Sum_probs=9.7
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 9708999999875202
Q gi|254780465|r 325 GRNSLLVKEAFYSLEN 340 (469)
Q Consensus 325 ~~d~~~v~~~m~~l~~ 340 (469)
..++..+.+++++-..
T Consensus 256 ~~nA~~lA~~L~~hp~ 271 (384)
T PRK08574 256 CENAMAIAEFLSEHPK 271 (384)
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999970999
No 163
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=68.03 E-value=9.8 Score=18.53 Aligned_cols=77 Identities=10% Similarity=0.249 Sum_probs=47.0
Q ss_pred CCCCEEEEECCC-CCHHHHHHHHHCCCCCCEEEEECCCC-------CCCHH---HHCCCEEECCCCEEEEEECC-CHHHH
Q ss_conf 798207997166-54046799986166785599973577-------67603---32131134478708997179-65888
Q gi|254780465|r 130 RDHYITIVGATS-GDTGAAAIKAFAGKKRINMYILFPEG-------RISVV---QQKQMTTSEASNINVIAVQS-SFDDC 197 (469)
Q Consensus 130 ~~~~~~il~ATS-GDTGsAa~~a~~~~~~i~v~vlyP~g-------~vS~~---Q~~qmtt~~~~Nv~~i~v~G-~FDDc 197 (469)
++|...|-+|+. +--|.|.+..|. ..+.++++.|=.. .+..- +-+......+..++.+.+|- +.|+|
T Consensus 5 ~gKvalVTGas~~~GIG~aiA~~la-~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dl~~~~~~ 83 (257)
T PRK12859 5 KNKVAVVTGVSRLDGIGAAICKELA-EAGYDIFFTYWTAYDKEMPWGVDQSEQIQLQEELLKNGVKVSSMELDLTQNDAP 83 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 9888999288999862999999999-879989998365201112345375799999999995498599998358999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999997501
Q gi|254780465|r 198 QKIVKNLFSD 207 (469)
Q Consensus 198 q~~Vk~~f~D 207 (469)
+++++++...
T Consensus 84 ~~~i~~~~~~ 93 (257)
T PRK12859 84 KELINKVTEQ 93 (257)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 164
>PRK05756 pyridoxamine kinase; Validated
Probab=67.99 E-value=9.8 Score=18.53 Aligned_cols=15 Identities=13% Similarity=0.379 Sum_probs=11.0
Q ss_pred CHHHHHHHHHHHHCC
Q ss_conf 658889999997501
Q gi|254780465|r 193 SFDDCQKIVKNLFSD 207 (469)
Q Consensus 193 ~FDDcq~~Vk~~f~D 207 (469)
+.||.....+++...
T Consensus 160 ~~~~~~~A~~~l~~~ 174 (287)
T PRK05756 160 TLEDAVAAARALIAR 174 (287)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 999999999999971
No 165
>PRK07479 consensus
Probab=67.82 E-value=9.9 Score=18.50 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 179820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
-++|...|-+|++ --|.|.+..|.. .+.+|++..-.. +...+ ..++.. .+.+++.+.+| .+.++++.+++++..
T Consensus 3 L~gK~alITGgs~-GIG~a~a~~la~-~G~~V~i~~~~~~~~~~~-~~~l~~-~g~~~~~~~~Dv~~~~~~~~~~~~~~~ 78 (252)
T PRK07479 3 LSGKVAIVTGAGS-GFGEGIAKRFAR-EGAKVVVADLNAAAAERV-ASEIAD-AGGNAIAVAADVSRGADVEALVEAALE 78 (252)
T ss_pred CCCCEEEEECCCC-HHHHHHHHHHHH-CCCEEEEEECCHHHHHHH-HHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7998899938876-899999999998-799999997989999999-999985-399789999258999999999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780465|r 207 D 207 (469)
Q Consensus 207 D 207 (469)
.
T Consensus 79 ~ 79 (252)
T PRK07479 79 A 79 (252)
T ss_pred H
T ss_conf 8
No 166
>cd06845 Bcl-2_like Apoptosis regulator proteins of the Bcl-2 family, named after B-cell lymphoma 2. This alignment model spans what have been described as Bcl-2 homology regions BH1, BH2, BH3, and BH4. Many members of this family have an additional C-terminal transmembrane segment. Some homologous proteins, which are not included in this model, may miss either the BH4 (Bax, Bak) or the BH2 (Bcl-X(S)) region, and some appear to only share the BH3 region (Bik, Bim, Bad, Bid, Egl-1). This family is involved in the regulation of the outer mitochondrial membrane's permeability and in promoting or preventing the release of apoptogenic factors, which in turn may trigger apoptosis by activating caspases. Bcl-2 and the closely related Bcl-X(L) are anti-apoptotic key regulators of programmed cell death. They are assumed to function via heterodimeric protein-protein interactions, binding pro-apoptotic proteins such as Bad (BCL2-antagonist of cell death), Bid, and Bim, by specifically interacting
Probab=67.61 E-value=7.6 Score=19.30 Aligned_cols=28 Identities=36% Similarity=0.809 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCC
Q ss_conf 7965888999999750154313583113455654440110
Q gi|254780465|r 191 QSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQ 230 (469)
Q Consensus 191 ~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q 230 (469)
+-..+-.+.+++++|.| .-||||||++=
T Consensus 66 ~~~~~~f~~Va~elf~d------------~~inWGRIval 93 (144)
T cd06845 66 DNAYEVFQEVARELFED------------GGINWGRIVAL 93 (144)
T ss_pred CHHHHHHHHHHHHHHHC------------CCCCHHHHHHH
T ss_conf 02999999999999625------------89879999999
No 167
>PRK06949 short chain dehydrogenase; Provisional
Probab=67.30 E-value=10 Score=18.43 Aligned_cols=75 Identities=9% Similarity=0.202 Sum_probs=48.5
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 3179820799716654046799986166785599973577-676033213113447870899717-96588899999975
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
.-++|.. |++..|+--|.|.+.+|. ..+-+|++.+-.. ++.++++ ++. ..+..++.+.+| .+.++++++|+++.
T Consensus 6 ~L~gKva-lVTGas~GIG~aiA~~la-~~Ga~V~i~~~~~~~~~~~~~-~i~-~~g~~~~~~~~Dv~~~~~v~~~v~~~~ 81 (258)
T PRK06949 6 NLEGKVA-LVTGASSGLGQRFAQVLS-QAGAKVVLASRRVERLKELRA-EIE-AEGGAAHVVSLDVTDYQSIKAAVAHAE 81 (258)
T ss_pred CCCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHH-HCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7899989-995857799999999999-879999999698899999999-999-659928999826899999999999999
Q ss_pred C
Q ss_conf 0
Q gi|254780465|r 206 S 206 (469)
Q Consensus 206 ~ 206 (469)
.
T Consensus 82 ~ 82 (258)
T PRK06949 82 T 82 (258)
T ss_pred H
T ss_conf 9
No 168
>PRK06196 oxidoreductase; Provisional
Probab=67.25 E-value=10 Score=18.43 Aligned_cols=72 Identities=11% Similarity=0.222 Sum_probs=47.4
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
-.+|.++|-+|||| -|-+++..+.. .+-+|++.-- + ...-+ +... .-+++..+.+| .+++.+++.++++...
T Consensus 24 L~GK~~vITGa~sG-IG~~tA~~La~-~Ga~Vil~~R-~-~~k~~--~a~~-~i~~~~~~~lDLs~~~sVr~~a~~~~~~ 96 (316)
T PRK06196 24 LSGKTAIVTGGYSG-LGLETTRALAQ-AGAHVVVPAR-R-PDAAR--EALA-GIDGVEVVALDLADLASVRAFAERFLDS 96 (316)
T ss_pred CCCCEEEECCCCCH-HHHHHHHHHHH-CCCEEEEEEC-C-HHHHH--HHHH-HHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99998999179967-99999999997-8998999949-9-99999--9998-7417857983688999999999999975
No 169
>PRK07454 short chain dehydrogenase; Provisional
Probab=67.05 E-value=10 Score=18.40 Aligned_cols=74 Identities=14% Similarity=0.221 Sum_probs=49.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--CCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 798207997166540467999861667855999735776760332--13113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ--KQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~--~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
...+..+++..|+--|.|.+..|. ..+-+|++.--. ...+|+ .++. ..+.+++.+.+| .+.++++.+++++..
T Consensus 4 ~~mKvalITGas~GIG~a~A~~la-~~G~~V~l~~R~--~~~l~~~~~e~~-~~g~~~~~~~~Dvt~~~~v~~~~~~~~~ 79 (241)
T PRK07454 4 NSMPTALITGASRGIGKATALAFA-KAGWDLALVARS--QDALEALAEELR-STGVKVAAYSIDLSNPEAIAPGIAELLE 79 (241)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHH-HCCCEEEEEECC--HHHHHHHHHHHH-HCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 999889991758789999999999-879989999899--999999999999-6599289999518999999999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780465|r 207 D 207 (469)
Q Consensus 207 D 207 (469)
.
T Consensus 80 ~ 80 (241)
T PRK07454 80 Q 80 (241)
T ss_pred H
T ss_conf 7
No 170
>PTZ00069 60S ribosomal protein L5; Provisional
Probab=66.99 E-value=10 Score=18.39 Aligned_cols=14 Identities=21% Similarity=0.200 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCC
Q ss_conf 89999998752026
Q gi|254780465|r 328 SLLVKEAFYSLENK 341 (469)
Q Consensus 328 ~~~v~~~m~~l~~~ 341 (469)
+..|.++|+.|++.
T Consensus 202 G~HVaeYM~~L~ee 215 (300)
T PTZ00069 202 GKHVAEYMKQLQEE 215 (300)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 63099999999864
No 171
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=66.78 E-value=10 Score=18.36 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=70.8
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEE
Q ss_conf 46621389812068238889999999973179820799716654046799986166785599973577676033213113
Q gi|254780465|r 100 LLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTT 179 (469)
Q Consensus 100 vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt 179 (469)
..-+|..-|..|.+++-- ..++ ......-...-+..-|-.+.-++....++-.-.++||.| .+-|.-. +.+
T Consensus 27 ~~PI~~tSt~~~~~~~~~-----~~~~--~~~~~~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~afsSG-maAI~~~-~l~ 97 (396)
T COG0626 27 NPPIYLTSTFVFDSAGEG-----LDAF--AGEEGGYDYSRTGNPTRDALEEALAELEGGEDAFAFSSG-MAAISTA-LLA 97 (396)
T ss_pred CCCEEEEEEECCCCHHHH-----HHHC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCC-HHHHHHH-HHH
T ss_conf 577143003103672343-----2101--355567514057896379999999986098837995373-9999999-998
Q ss_pred ECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEE----EEECC
Q ss_conf 44787089971796588899999975015431358311345565444011055899999874477887389----96346
Q gi|254780465|r 180 SEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISF----SVPTG 255 (469)
Q Consensus 180 ~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f----~VPtG 255 (469)
....+=|++..+-.|-.|.++..+++... .+..+-+..-+-..+.. .. ..++-++.| +=|+-
T Consensus 98 ll~~GD~vl~~~~~YG~t~~~~~~~l~~~----gi~~~~~d~~~~~~~~~--------~~--~~~~tk~v~lEtPsNP~l 163 (396)
T COG0626 98 LLKAGDHVLLPDDLYGGTYRLFEKILQKF----GVEVTFVDPGDDEALEA--------AI--KEPNTKLVFLETPSNPLL 163 (396)
T ss_pred HCCCCCEEEECCCCCCHHHHHHHHHHHHC----CEEEEEECCCCHHHHHH--------HH--CCCCCEEEEEECCCCCCC
T ss_conf 35799989845776432999999999856----85999978997588998--------74--466834999967999630
Q ss_pred CHHHHHH-HHHHHHCC
Q ss_conf 5788788-66777508
Q gi|254780465|r 256 NFGDIFA-GYMAKMMG 270 (469)
Q Consensus 256 NfGni~A-g~~Ak~MG 270 (469)
.-.||-+ .=+|+++|
T Consensus 164 ~v~DI~~i~~~A~~~g 179 (396)
T COG0626 164 EVPDIPAIARLAKAYG 179 (396)
T ss_pred CCCCHHHHHHHHHHCC
T ss_conf 5556999999998649
No 172
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; InterPro: IPR005966 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as) 1-aminocyclopropane-1-carboxylate deaminase. However, the members of this family are less well conserved.; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding.
Probab=66.67 E-value=7 Score=19.52 Aligned_cols=235 Identities=16% Similarity=0.235 Sum_probs=124.8
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCH----HHHCC-CEEECCCCEEEEEECC
Q ss_conf 9999999973179820799716654046799986166785599973577-6760----33213-1134478708997179
Q gi|254780465|r 119 IAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISV----VQQKQ-MTTSEASNINVIAVQS 192 (469)
Q Consensus 119 l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~----~Q~~q-mtt~~~~Nv~~i~v~G 192 (469)
|=.|+.-+|++.-.-+.=++|=--+---|.+ ..+.+=+++.+.+.-++ ++.. ..--. +-...+-+|+.+..+-
T Consensus 44 LEyLl~dAl~~GAdtviT~GaiqSNH~r~TA-~~a~~lGL~~~l~Lr~~~~~~~E~~~l~GN~Ll~~L~g~~~~~~~~~~ 122 (339)
T TIGR01275 44 LEYLLADALKKGADTVITVGAIQSNHARATA-LVAKKLGLDAVLLLRKSKGVLDEDEELKGNLLLDKLLGAEVRVVSAEE 122 (339)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCHHHHHHH-HHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCEEEECHHH
T ss_conf 9999999986289399982762101589999-999974997699963664000124423303688987186179984356
Q ss_pred CHHH-HHHHHHHHHCC---HHHHC-CCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCC--CC--CEE---EEEECCCHHHH
Q ss_conf 6588-89999997501---54313-58311345565444011055899999874477--88--738---99634657887
Q gi|254780465|r 193 SFDD-CQKIVKNLFSD---VFFCH-SVNLSGINSINWARIMAQIVYYFVSSIALGSP--NR--NIS---FSVPTGNFGDI 260 (469)
Q Consensus 193 ~FDD-cq~~Vk~~f~D---~~~~~-~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~--~~--~i~---f~VPtGNfGni 260 (469)
.++= .+.+..++-.. +-.+. =+..+..||+= ..=||-|.+++.++ .+ .++ ++|=+|.-|-+
T Consensus 123 ~~~~Gs~~~~~~~~~~~e~~G~kpYVIP~GGSn~LG-------alGYv~A~~Ei~~QLN~~~d~vkfd~iVvA~GSGGT~ 195 (339)
T TIGR01275 123 YEEIGSEALLEELKEKLEKEGKKPYVIPVGGSNSLG-------ALGYVEAVLEIAEQLNLESDEVKFDSIVVAAGSGGTI 195 (339)
T ss_pred HCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCHHH-------HHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHH
T ss_conf 027364889999999998379963251788865124-------7899999999998607886642015268961762678
Q ss_pred HH---H-HHHHHC-CC---CCC-EEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHH
Q ss_conf 88---6-677750-89---877-058723676335677532220102345565642001340137889998709708999
Q gi|254780465|r 261 FA---G-YMAKMM-GL---PIE-KLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLV 331 (469)
Q Consensus 261 ~A---g-~~Ak~M-GL---PI~-kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v 331 (469)
-. | |+.-.| -+ ||+ -+||+.|+--+ .-.+| . + -..+
T Consensus 196 AGLS~GsWL~~L~~~~~dG~vgfPfiv~V~~~~v----------------~~~~~-----------~-~-------~~~~ 240 (339)
T TIGR01275 196 AGLSLGSWLSILKEEVEDGSVGFPFIVAVSRFSV----------------ADDSD-----------K-F-------VNLV 240 (339)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEE----------------EECCH-----------H-H-------HHHH
T ss_conf 9999988998534334678645544898655788----------------51653-----------5-7-------8999
Q ss_pred HHHHHHHCCCCCCCCCCHHHHHHHC-CCCCCCCCHHHHHHHHHHHHHHCCCEECC-CHHHHHHHHHHH
Q ss_conf 9998752026510552022110001-21342138899999999999863959838-339999999998
Q gi|254780465|r 332 KEAFYSLENKKYFRIDSEHLQKMSL-SFSAKRASMEDVNSVIKSVLEKSNYLVDP-HTAVGIHAALAC 397 (469)
Q Consensus 332 ~~~m~~l~~~g~~~i~~~~l~~l~~-~f~s~svsDeet~~~Ik~~y~~~gyiiDP-HTAvG~~aa~~~ 397 (469)
+++.+.++..| .++.......+.+ .+-.|.+.-.|-.+.||++-...|+|+|| -|+=+..+....
T Consensus 241 ~~~~~~L~~~G-lrVn~~~~~~~~dy~~~gYa~~~~E~~e~vk~vA~~eGiiLDPVYtGKA~~GLid~ 307 (339)
T TIGR01275 241 KEIAEGLEVKG-LRVNSEVILELDDYKGPGYAVPTSEELEIVKKVASLEGIILDPVYTGKAFYGLIDL 307 (339)
T ss_pred HHHHHHCCCCC-EEEHHHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHH
T ss_conf 99998434456-25402121100136688776557201667545541267455752158999988886
No 173
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=66.54 E-value=10 Score=18.33 Aligned_cols=76 Identities=5% Similarity=0.080 Sum_probs=48.2
Q ss_pred HCCCCCEEEEECCCCC-HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 3179820799716654-046799986166785599973577676033213113447870899717-96588899999975
Q gi|254780465|r 128 EERDHYITIVGATSGD-TGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 128 ~~~~~~~~il~ATSGD-TGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
.-++|...|-+|++|- -|.|.+.+|. ..+-+|++.|-..+-.+..+ ++... ......+.+| .+-|+|+.+++++.
T Consensus 3 ~L~GK~alVTGaa~g~GIG~aiA~~la-~~Ga~V~i~~~~~~~~~~~~-~~~~~-~~~~~~~~~Dvt~~~~v~~~~~~~~ 79 (254)
T PRK07533 3 PLAGKRGLVVGIANEQSIAWGCARAFR-ALGAELAVTYLNDKARPYVE-PLAEE-LDAPLLMPLDVREPGQLEAVFARIA 79 (254)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHH-HHHHH-CCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 899998999688898089999999999-87999999828877899999-99974-5981899916999999999999999
Q ss_pred C
Q ss_conf 0
Q gi|254780465|r 206 S 206 (469)
Q Consensus 206 ~ 206 (469)
.
T Consensus 80 ~ 80 (254)
T PRK07533 80 E 80 (254)
T ss_pred H
T ss_conf 9
No 174
>PRK12746 short chain dehydrogenase; Provisional
Probab=66.45 E-value=10 Score=18.32 Aligned_cols=162 Identities=16% Similarity=0.218 Sum_probs=76.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC--CCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7982079971665404679998616678559997357767603321--3113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK--QMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~--qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.. |++..++--|.|.+..|. ..+-+|++.|=.+. ...++. ++.. .+..++.+..| .+.|+|+.+++++..
T Consensus 5 ~gKva-lITGga~GIG~aia~~la-~~Ga~V~i~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 80 (254)
T PRK12746 5 DGKVA-LVTGASRGIGRAIAMRLA-NDGALVAIHYGRNK-AAADETIREIES-NGGKAFLIEADLNSIDGVKKLVEQLKN 80 (254)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEECCCCH-HHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99889-994847689999999999-87999999659998-999999999985-599289997577999999999999999
Q ss_pred CHHHHC---CCC-------------CCCCCCCCHHHCCCCH----HHHHHHHHH-HCCCCCCEEEEEECCCHHHH-HHHH
Q ss_conf 154313---583-------------1134556544401105----589999987-44778873899634657887-8866
Q gi|254780465|r 207 DVFFCH---SVN-------------LSGINSINWARIMAQI----VYYFVSSIA-LGSPNRNISFSVPTGNFGDI-FAGY 264 (469)
Q Consensus 207 D~~~~~---~~~-------------l~s~NSIN~~Ril~Q~----vyYf~a~~~-~~~~~~~i~f~VPtGNfGni-~Ag~ 264 (469)
.-..+- ++. +.-.+.=.|-+++--- ++...+.+. +...++-|+++--++..|.. .++|
T Consensus 81 ~~~~~~g~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~f~~~k~~~p~m~~~G~IVnisS~~~~~~~~~~~~Y 160 (254)
T PRK12746 81 ELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFTGSIAY 160 (254)
T ss_pred HHHHHCCCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCCCHHH
T ss_conf 98664168985189979978899991449999999999985346899999999998616966999243233578873778
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCC
Q ss_conf 7775089877058723676335677532220102345565642
Q gi|254780465|r 265 MAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPA 307 (469)
Q Consensus 265 ~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~Sps 307 (469)
-|-|-|+- -|+|.+..---...-.+.+++|-
T Consensus 161 ~asKaal~------------~ltr~lA~e~a~~gIrVNaVaPG 191 (254)
T PRK12746 161 GLSKGALN------------TMTLPLAKHLGERGITVNTIMPG 191 (254)
T ss_pred HHHHHHHH------------HHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 99999999------------99999999965139899998789
No 175
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=66.01 E-value=3.8 Score=21.37 Aligned_cols=85 Identities=22% Similarity=0.346 Sum_probs=35.9
Q ss_pred EEEEECCCCCCC------------CCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECC
Q ss_conf 546621389812------------068238889-9999999731798207997166540467999861667855999735
Q gi|254780465|r 99 FLLELFHGPTLS------------FKDIAMQFI-AELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFP 165 (469)
Q Consensus 99 ~vlELfHGPT~a------------FKD~a~q~l-~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP 165 (469)
.-.-+-|=||+= =|+-||.+| ++|+++-+++.....--+--+=+|-| ||. .|+..||+|
T Consensus 266 SAVRITHiPTGiVv~CQ~eRSQ~kNK~~Amk~LKaKLYe~~~~k~~~~~~~~~~ek~eIg-------WG~-QIRSYVl~P 337 (373)
T TIGR00020 266 SAVRITHIPTGIVVQCQNERSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIG-------WGN-QIRSYVLHP 337 (373)
T ss_pred CCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------CCC-CCCEEEECC
T ss_conf 532654435873685127304688899999999999999888999888876302467778-------645-100004076
Q ss_pred CCCCCHHHHCCCEEECCCCEEEEEECCCHHH
Q ss_conf 7767603321311344787089971796588
Q gi|254780465|r 166 EGRISVVQQKQMTTSEASNINVIAVQSSFDD 196 (469)
Q Consensus 166 ~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDD 196 (469)
...|=+.-- -..-.||.+| +||+-|.
T Consensus 338 Y~~vKD~Rt----~~E~gNv~AV-lDGdID~ 363 (373)
T TIGR00020 338 YQLVKDLRT----NYETGNVEAV-LDGDIDE 363 (373)
T ss_pred HHHHHHCCC----CCCCCCCCEE-ECCCHHH
T ss_conf 133322016----7235782257-5476547
No 176
>PRK09242 tropinone reductase; Provisional
Probab=65.92 E-value=11 Score=18.25 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=47.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEE-ECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 179820799716654046799986166785599973577676033213113-447870899717-965888999999750
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTT-SEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt-~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
-++|...|-+++ +--|.|.+..|.. .+.+|++.+-...--+....++.. ..+.+++.+.+| .+.+++++++.++..
T Consensus 8 L~gK~alITGgs-~GIG~a~a~~la~-~Ga~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 85 (258)
T PRK09242 8 LDGQTALITGAS-KGIGLAIARELLG-LGADVLIVARDADALAQARDELAEEFPERELHGLAADVSDDEDRRAILDWVED 85 (258)
T ss_pred CCCCEEEEECCC-CHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 799999994848-6899999999998-79989999698899999999998644797299999307999999999999999
No 177
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=65.87 E-value=11 Score=18.25 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=25.6
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 9971665404679998616678559997357767603321311344787089971796588899999975
Q gi|254780465|r 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLF 205 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f 205 (469)
+.+-..-.|-.+..+.++..++-.--+++|.|. +-+.-.-|. ....+=|++..+.-+--+.++.++.+
T Consensus 33 ~Y~R~~nPT~~~le~~la~LEg~~~a~~~sSGm-aAi~~~l~~-l~~~Gd~vl~~~~~Yg~t~~~~~~~l 100 (369)
T cd00614 33 IYSRIGNPTVDALEKKLAALEGGEAALAFSSGM-AAISTVLLA-LLKAGDHVVASDDLYGGTYRLFERLL 100 (369)
T ss_pred EECCCCCHHHHHHHHHHHHHHCCCCEEEECCHH-HHHHHHHHH-HCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 341998867999999999982998089965789-999999998-52889999995788523999999778
No 178
>KOG1395 consensus
Probab=65.09 E-value=11 Score=18.15 Aligned_cols=346 Identities=13% Similarity=0.116 Sum_probs=151.3
Q ss_pred CCCCCCCCCCCCCC----CHHHHHHHCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCCCCCEEEECCCC
Q ss_conf 87863286107888----9889987709998999999998751578---9989999999998630476678604772488
Q gi|254780465|r 25 TDGGLYIPKYIPRL----SEKEIKDLRGLSYQEIALFIFRLFIGQE---IKSSKLRDIVNRSYHCFRNAAVTPLIQLNAN 97 (469)
Q Consensus 25 ~DGGL~vP~~~p~~----~~~~~~~~~~~sy~e~a~~il~~f~~~~---i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~~ 97 (469)
.-||-|+||.+-+. ...+.....+..|.|--.+|.+ +++-. +-.+.|.+.+.. +..
T Consensus 78 kfgg~yvPE~L~h~l~ELek~f~~~~~d~df~ee~~eiy~-y~gRpspL~~AkRLte~~q~----------------ga~ 140 (477)
T KOG1395 78 KFGGPYVPEALAHCLPELEKQFYTAERDEDFWEEFLEIYK-YLGRPSPLIRAKRLTEHCQT----------------GAR 140 (477)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHCC----------------CCE
T ss_conf 4478658699999999999988877505207899999999-80898566899999998477----------------877
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHH
Q ss_conf 2546621389812068238889999999973179820799716-65404679998616678559997357767--60332
Q gi|254780465|r 98 EFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGAT-SGDTGAAAIKAFAGKKRINMYILFPEGRI--SVVQQ 174 (469)
Q Consensus 98 ~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g~v--S~~Q~ 174 (469)
.|+--=--.||+|.|=--.- ++ ..+.++-.+.+|+.-| -|--|+|.+-+++.. ++++.|.--...+ -..-.
T Consensus 141 IylKrEdlnh~GsHKiNnav--~Q---allakrlGkknviaETGAGQhGvatA~a~a~F-Gl~C~v~mgAed~~rqalnv 214 (477)
T KOG1395 141 IYLKREDLNHTGSHKINNAV--AQ---ALLAKRLGKKNVIAETGAGQHGVATATACAKF-GLDCTVYMGAEDYRRQALNV 214 (477)
T ss_pred EEEEECCCCCCCCCCCCCHH--HH---HHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH-CCCEEEEECHHHHHHHHHHH
T ss_conf 89971578866667742088--99---99998736431551247873206889999872-87428995225777778999
Q ss_pred CCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHH-CCCCCCCCCCCCHHHCCCCHHHHHHHHH-------HHCCCCC
Q ss_conf 1311344787089971796588899999975015431-3583113455654440110558999998-------7447788
Q gi|254780465|r 175 KQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFC-HSVNLSGINSINWARIMAQIVYYFVSSI-------ALGSPNR 246 (469)
Q Consensus 175 ~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~-~~~~l~s~NSIN~~Ril~Q~vyYf~a~~-------~~~~~~~ 246 (469)
-.|.++.. -||++-- |+ --....+.+.+.++--. +......-|-|-. --.|-+|--|.+.. ++...++
T Consensus 215 frmrllGA-kV~pv~s-Gt-~tLrda~sea~r~wvt~~ett~y~~gs~~gp-hp~pt~vr~fhsvIg~Et~~Q~me~~g~ 290 (477)
T KOG1395 215 FRMRLLGA-KVHPVTS-GT-RTLRDATSEAGRLWVTNSETTHYAAGSAIGP-HPYPTVVRTFHSVIGKETKIQQMEKFGK 290 (477)
T ss_pred HHHHHHCC-EEEECCC-CC-EEHHCCCCHHHHHHHHHHHEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99997076-5763478-75-1032064214555640101134420156789-8758899999998707899999998289
Q ss_pred CEEEEEE---CC-CHHHHHHHHHHHHC-CCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7389963---46-57887886677750-8987705872367633567753222010234556564200134013788999
Q gi|254780465|r 247 NISFSVP---TG-NFGDIFAGYMAKMM-GLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLF 321 (469)
Q Consensus 247 ~i~f~VP---tG-NfGni~Ag~~Ak~M-GLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf 321 (469)
..+.+|- .| |+--++.-|+.-+. |+ |+ .+.|-.--| ..+.+.+.| +=|+++---.--++-
T Consensus 291 ~PD~vvaCvGGGSN~~Glf~pF~~dk~v~~-ig-veaagdg~d--tp~hsatlt-----------agd~Gv~hG~~ty~l 355 (477)
T KOG1395 291 LPDAVVACVGGGSNSAGLFSPFIRDKSVGM-IG-VEAAGDGVD--TPKHSATLT-----------AGDVGVFHGVTTYVL 355 (477)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCHHHE-EE-EEECCCCCC--CCCCCCEEE-----------CCCCCCCCCCEEEEE
T ss_conf 998599822687762001471010002002-11-463137667--731004145-----------456532126411256
Q ss_pred H----------------HHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECC
Q ss_conf 8----------------709708999999875202651055202211000121342138899999999999863959838
Q gi|254780465|r 322 E----------------ISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDP 385 (469)
Q Consensus 322 ~----------------l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDP 385 (469)
. =|-+-+..++.+. +.|. ...-+++|.|.++.-+.+-.-.|+|--|
T Consensus 356 q~~dGqi~~phsIsAGLdYpGvgPels~~k----~~gr--------------ae~isitd~eclegfk~~srlEGIIPAl 417 (477)
T KOG1395 356 QDTDGQIFDPHSISAGLDYPGVGPELSHLK----ETGR--------------AEFISITDAECLEGFKQLSRLEGIIPAL 417 (477)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCHHHHHHH----HCCC--------------EEEEECCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 535786357776445778898772278887----5372--------------3577537299999999998752663477
Q ss_pred CHHHHHHHHHHH-HHCCCCCEE-EEECCCCCCCHHHHHHHHC-CCCCC
Q ss_conf 339999999998-747998399-9971884349888999808-79888
Q gi|254780465|r 386 HTAVGIHAALAC-RKSSSTPMV-TLATAHPSKFPDTVKAASG-IVPDC 430 (469)
Q Consensus 386 HTAvG~~aa~~~-~~~~~~p~V-vLATAHPaKFpe~V~~Aig-~~~~~ 430 (469)
-+.-++++..+. ..-++...| .-=+.|.-|--.++.+-+. ..|++
T Consensus 418 EssHAva~~~~lck~l~~~k~ivi~~sGrGdkDvqS~~kyL~~lgpki 465 (477)
T KOG1395 418 ESSHAVAGEAELCKTLPEDKVIVINISGRGDKDVQSVAKYLPGLGPKI 465 (477)
T ss_pred CHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 605678889876121687758999825878720888998711116665
No 179
>KOG0875 consensus
Probab=64.99 E-value=10 Score=18.33 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=8.6
Q ss_pred HHHHHHHH-----HHHH----CCCC
Q ss_conf 78878866-----7775----0898
Q gi|254780465|r 257 FGDIFAGY-----MAKM----MGLP 272 (469)
Q Consensus 257 fGni~Ag~-----~Ak~----MGLP 272 (469)
.-|-.|+| +|++ |||-
T Consensus 92 LtNyaAay~TglLLarR~l~~~gmD 116 (264)
T KOG0875 92 LTNYAAAYCTGLLLACRLLKRFGMD 116 (264)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 4016888766789999999870861
No 180
>PRK06114 short chain dehydrogenase; Provisional
Probab=64.86 E-value=11 Score=18.12 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=77.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577--676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++| ..|++..++--|.|.+..|. ..+-+|++.+=.. ...+..+ + ....+..+..+.+| .+-++++++|+++..
T Consensus 15 ~gK-valVTGa~~GIG~aiA~~la-~~Ga~V~i~~~~~~~~~~~~~~-~-~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~ 90 (262)
T PRK06114 15 DGQ-VAFVTGAGSGIGQRIAIGLA-QAGADVALFDLRTDDGLAETAE-H-IEAAGRRAIQIAADVTSKSDLAAAVARTEA 90 (262)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCHHHHHHHHH-H-HHHCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999-89996847899999999999-8799899995897469999999-9-996599589998168999999999999999
Q ss_pred CHHHHCCCC-------------CCCCCCCCHHHCCCCH---HHHHH-H-HHHHCC--CCCCEEEEEECCCH---HHHHHH
Q ss_conf 154313583-------------1134556544401105---58999-9-987447--78873899634657---887886
Q gi|254780465|r 207 DVFFCHSVN-------------LSGINSINWARIMAQI---VYYFV-S-SIALGS--PNRNISFSVPTGNF---GDIFAG 263 (469)
Q Consensus 207 D~~~~~~~~-------------l~s~NSIN~~Ril~Q~---vyYf~-a-~~~~~~--~~~~i~f~VPtGNf---Gni~Ag 263 (469)
. | .++. +.-...=.|-|++--- +|+.. + ...+.+ .++-|+++=-+|-. |-..+.
T Consensus 91 ~--~-G~iDiLVNnAGi~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~~~m~~~~~G~IVnisS~~g~~~~~g~~~~~ 167 (262)
T PRK06114 91 E--L-GALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGVIVNRGLLQAH 167 (262)
T ss_pred H--C-CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCCCHHH
T ss_conf 8--1-999899989989999881559999999999997366999999999999972897899978622304788853188
Q ss_pred HHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCC
Q ss_conf 67775089877058723676335677532220102345565642
Q gi|254780465|r 264 YMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPA 307 (469)
Q Consensus 264 ~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~Sps 307 (469)
|-|-|.|+- -|+|.+...--...-.+.+++|-
T Consensus 168 Y~asKaav~------------~lTr~lA~e~a~~gIrVNaIaPG 199 (262)
T PRK06114 168 YNASKAGVI------------HMSKSLAMEWVGRGIRVNTISPG 199 (262)
T ss_pred HHHHHHHHH------------HHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 999999999------------99999999967059399999758
No 181
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=64.65 E-value=8 Score=19.15 Aligned_cols=129 Identities=19% Similarity=0.194 Sum_probs=64.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--C----CCHHHHCCCEEECCCCEEEEEECCCHHHHHH---HHHH
Q ss_conf 20799716654046799986166785599973577--6----7603321311344787089971796588899---9999
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--R----ISVVQQKQMTTSEASNINVIAVQSSFDDCQK---IVKN 203 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~----vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~---~Vk~ 203 (469)
++.|++| +|..|++.+.....+.-.+=++|+-.. + .-+++.. .+....+ .+.-.++++||.. +|=.
T Consensus 2 KV~IIGa-gg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~--~~~~~~~--~~~~~~~~~~~~daDiVVit 76 (142)
T pfam00056 2 KVAVVGA-GGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHG--STFLSVP--GIVGGDDYEALKDADVVVIT 76 (142)
T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCC--CCCCCCC--EEECCCCHHHHCCCCEEEEE
T ss_conf 8999898-77899999999974796634788505776411799998614--4347887--69748838883789999981
Q ss_pred H-HCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 7-5015431358311345565444011055899999874477887389963465788788667775089877058
Q gi|254780465|r 204 L-FSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277 (469)
Q Consensus 204 ~-f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli 277 (469)
. ....+-..+..|-..|.--.-.+.+++ .+.... .+.|-..|==|+.+.+..|..|+|=+|++
T Consensus 77 aG~~~k~g~~R~dll~~Na~I~~~i~~~i----------~~~~p~-~ivivvtNPvDvmt~~~~~~sg~p~~rVi 140 (142)
T pfam00056 77 AGVPRKPGMTRLDLLNRNAGIFKDIVPAI----------AKSAPD-AIVLVVSNPVDILTYIAWKVSGLPPERVI 140 (142)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHH----------HHHCCC-EEEEEECCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 57778999877899997469999999999----------976998-19999459468899999999784943110
No 182
>PRK06841 short chain dehydrogenase; Provisional
Probab=64.38 E-value=11 Score=18.06 Aligned_cols=160 Identities=13% Similarity=0.228 Sum_probs=79.6
Q ss_pred HHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 73179820799716654046799986166785599973577676033213113447870899717-96588899999975
Q gi|254780465|r 127 LEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 127 l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
+.-++|.. |++..|+--|.|.+..|. ..+-+|++..=.....+ ......+.+++.+.+| .+.++++++|+++.
T Consensus 11 ~~l~gKva-lVTGas~GIG~aiA~~la-~~Ga~V~i~d~~~~~~~----~~~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~ 84 (255)
T PRK06841 11 FDLSGKVA-VVTGGASGIGHAIAELFA-AKGARVALLDRSEDVAE----VAAQLLGGNAKGLVCDVSDSQSVEAAVAAAI 84 (255)
T ss_pred CCCCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHH----HHHHHCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 58999999-997967789999999999-87999999969878999----9998459966999984699999999999999
Q ss_pred CCHHHHCCCC-C------------CCCCCCCHHHCCCC---HHHHHH-HHH-HHCC--CCCCEEEEEECCCHHHH-HHHH
Q ss_conf 0154313583-1------------13455654440110---558999-998-7447--78873899634657887-8866
Q gi|254780465|r 206 SDVFFCHSVN-L------------SGINSINWARIMAQ---IVYYFV-SSI-ALGS--PNRNISFSVPTGNFGDI-FAGY 264 (469)
Q Consensus 206 ~D~~~~~~~~-l------------~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~~--~~~~i~f~VPtGNfGni-~Ag~ 264 (469)
..-. ++. | ....-=.|-|++-- -+|++. +.+ .+.+ .++-|+++=-.|-.|.- .+.|
T Consensus 85 ~~~g---~iDiLVNNAGi~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~~~m~~~~~G~IInisS~~~~~~~~~~~~Y 161 (255)
T PRK06841 85 SAFG---RIDILVNSAGVALLAPAEDVSEADWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAY 161 (255)
T ss_pred HHHC---CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCHHH
T ss_conf 9819---9879998997899998044999999999998559999999999999998299659999466656689985889
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 777508987705872367633567753222010-23455656420
Q gi|254780465|r 265 MAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 265 ~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
-|-|.|+- -|+|.+... |.+ .-.+.+++|.+
T Consensus 162 ~asKaav~------------~ltrslA~e-la~~gIrVNaVaPG~ 193 (255)
T PRK06841 162 CASKAGVV------------GMTKVLALE-WGPHGITVNAISPTV 193 (255)
T ss_pred HHHHHHHH------------HHHHHHHHH-HHHCCEEEEEEEECC
T ss_conf 99999999------------999999999-703095999985388
No 183
>PRK05599 hypothetical protein; Provisional
Probab=63.84 E-value=12 Score=17.99 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=42.2
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 0799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 134 ITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 134 ~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+.|.+||||= |.|.+..++ . +-++++.--.. +..++++ ++-...+..|+++..| .+.|+++.+++++..
T Consensus 3 vlITGASsGI-G~a~A~~lA-~-G~~vvl~~R~~e~l~~l~~-~l~~~g~~~v~~~~~Dvtd~~~~~~~v~~~~~ 73 (246)
T PRK05599 3 ILILGGTSDI-AGEIATLLA-H-GEDVVLAARRPEAAGGLAE-DLRQLGATSVHVLSFDATDLDSHRELVKQTQE 73 (246)
T ss_pred EEEECCCHHH-HHHHHHHHH-C-CCCEEEEECCHHHHHHHHH-HHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9998886899-999999998-5-9949999999999999999-99862597189972899999999999999998
No 184
>KOG1481 consensus
Probab=63.61 E-value=12 Score=17.96 Aligned_cols=299 Identities=19% Similarity=0.222 Sum_probs=153.0
Q ss_pred CEEEECCC-----CCEEE--EECCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 60477248-----82546--621389812068238889999999973179--8207997166540467999861667855
Q gi|254780465|r 89 TPLIQLNA-----NEFLL--ELFHGPTLSFKDIAMQFIAELMDHILEERD--HYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 89 ~pl~~l~~-----~~~vl--ELfHGPT~aFKD~a~q~l~~~~~~~l~~~~--~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
+||.+++. +..+| -=|-.|.+|-||...--+ ...+.++.+ +-.+|.-.|+|.||-..+.-+.. -+-+
T Consensus 50 Tpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~i---ir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a-~Gyk 125 (391)
T KOG1481 50 TPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYI---IRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARA-LGYK 125 (391)
T ss_pred CCEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHH---HHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHHH-CCCC
T ss_conf 85588620143436214123210389997556669999---9979972873358558864777653038775542-2750
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCC--CC-------
Q ss_conf 999735776760332131134478708997179658889999997501543135831134556544401--10-------
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIM--AQ------- 230 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril--~Q------- 230 (469)
..|..|...- ..+.++....|..||.+..-- +-|-...|-.+-. + .+ ...|+-|-.|=. -|
T Consensus 126 ~~I~mPddqs--~eK~~ile~LGA~V~rV~pa~-i~dp~~yvn~Arr--~-an----~~~~~~ngi~g~fAdQFeN~AN~ 195 (391)
T KOG1481 126 CHIYMPDDQS--QEKSDILEFLGAEVHRVPPAP-IVDPNHYVNQARR--A-AN----ETPNASNGIRGWFADQFENVANW 195 (391)
T ss_pred EEEECCCHHH--HHHHHHHHHHCCEEEECCCCC-CCCHHHHHHHHHH--H-HH----HCCCCCCCCCCCHHHHHCCHHHH
T ss_conf 4997788077--788999997245001058867-4680577789999--7-54----16445677431314431377888
Q ss_pred HHHHHHHHHH-HCCCCCCE-EEEEECCCHHHHHH--HHHHHHCCCCCCEEEEECCCCC---------HHHHHHHCCCHHC
Q ss_conf 5589999987-44778873-89963465788788--6677750898770587236763---------3567753222010
Q gi|254780465|r 231 IVYYFVSSIA-LGSPNRNI-SFSVPTGNFGDIFA--GYMAKMMGLPIEKLIIATNEND---------TLVRMFDMGMYRP 297 (469)
Q Consensus 231 ~vyYf~a~~~-~~~~~~~i-~f~VPtGNfGni~A--g~~Ak~MGLPI~kli~AtN~Nd---------iL~rf~~tG~y~~ 297 (469)
.++|=..--+ +.+....| .|.--+|.-|-+.. -|+--|---|+. ...|--.-- ++++...+.--++
T Consensus 196 ~aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~-~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~ 274 (391)
T KOG1481 196 LAHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVA-VFLADPPGSGLYNKVNYGVMYDHIETEGTRR 274 (391)
T ss_pred HHHHCCCCCHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHCCCCCEE-EEEECCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 887407681788860687333786168885128789987632788448-9996799875023200233333465317666
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 23455656420013401378899987097089999998752026510552022110001213421388999999999998
Q gi|254780465|r 298 EIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLE 377 (469)
Q Consensus 298 ~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~ 377 (469)
+.-.-|+.--+-|. |+ ++.|.+-.+. .-.+.+++|++-.+.-+.+-.
T Consensus 275 r~q~dti~EGIGin------Ri---------------------T~Nf~m~~~l------iD~a~rv~Deqai~Msr~Ll~ 321 (391)
T KOG1481 275 RNQVDTITEGIGIN------RI---------------------TGNFQMAEDL------IDDAMRVTDEQAINMSRYLLD 321 (391)
T ss_pred CCCCCHHHHCCCCC------CC---------------------CCCCCCCHHH------HHHHEECCHHHHHHHHHHHHH
T ss_conf 78764021224523------01---------------------4662003334------210123673999999998610
Q ss_pred HCCCEECCCHHHHHHHHHHHH--HCCCCCEEEEECCCCC----CCH-HHHHHHHCCCCCCCHHHH
Q ss_conf 639598383399999999987--4799839999718843----498-889998087988898898
Q gi|254780465|r 378 KSNYLVDPHTAVGIHAALACR--KSSSTPMVTLATAHPS----KFP-DTVKAASGIVPDCPISLE 435 (469)
Q Consensus 378 ~~gyiiDPHTAvG~~aa~~~~--~~~~~p~VvLATAHPa----KFp-e~V~~Aig~~~~~P~~L~ 435 (469)
+.|.++--.+|+...|+.+.- ..++..+|++.|-+.. ||- +.....-+..|.+++.|+
T Consensus 322 ~dGLFvGsSsa~N~VaAv~vAk~LgpG~~iVtilCDsG~rh~sk~~~~~~l~~~~l~p~~~~~l~ 386 (391)
T KOG1481 322 NDGLFVGSSSALNCVAAVRVAKTLGPGHTIVTILCDSGSRHLSKLFSESFLESKKLSPVIEPQLK 386 (391)
T ss_pred CCCEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHCCHHHHHHCCCCCCCCHHHH
T ss_conf 68657635336779999999975089964899995785268887608888755388744320231
No 185
>PRK07576 short chain dehydrogenase; Provisional
Probab=63.34 E-value=12 Score=17.93 Aligned_cols=74 Identities=9% Similarity=0.175 Sum_probs=46.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 179820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
-++|...|.+ .|+--|.|.+..|. ..+-+|++.+-.. +..+. ..++.. .+.+++.+.+| .+-++++++++++..
T Consensus 6 L~gK~alVTG-gs~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~-~~~l~~-~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 81 (260)
T PRK07576 6 LAGKNVFVVG-GTSGINLGIAQAFA-RAGANVAVASRSQEKVDAA-VAQLQQ-AGPEALGVSADVRDYAAVEAAFAAIAD 81 (260)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHH-HHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 3899899958-96199999999999-8799999997988999999-999995-399489999318999999999999999
No 186
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=63.25 E-value=12 Score=17.92 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=45.6
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 20799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+..+++..|+--|.|.+..|. ..+-+|++..-.. +..++.+ ++-. .+.+++.+.+| .+.++++++|+++..
T Consensus 4 KvalITG~s~GIG~aia~~la-~~Ga~V~i~~r~~~~~~~~~~-~l~~-~g~~~~~~~~Dv~d~~~v~~~v~~~~~ 76 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFA-EEGAKVAVFDLNREAAEKVAA-DIRA-KGGNAQAFACDITDRDSVDTAVAAAEQ 76 (250)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 999996857689999999999-879999999798899999999-9995-399289999448999999999999999
No 187
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF; InterPro: IPR014317 Members of this protein are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, found in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol and filamentous phage infection..
Probab=63.24 E-value=4.2 Score=21.09 Aligned_cols=22 Identities=32% Similarity=0.567 Sum_probs=19.5
Q ss_pred EEEEECCCCCHHHHHHHCCCHHCC
Q ss_conf 058723676335677532220102
Q gi|254780465|r 275 KLIIATNENDTLVRMFDMGMYRPE 298 (469)
Q Consensus 275 kli~AtN~NdiL~rf~~tG~y~~~ 298 (469)
|||||||+| |+..=..|.++.+
T Consensus 136 RlvaATN~D--LP~lA~~G~FRaD 157 (349)
T TIGR02974 136 RLVAATNAD--LPALAAEGRFRAD 157 (349)
T ss_pred EEEECCCCC--HHHHHHCCCCCCH
T ss_conf 367621413--6989865898401
No 188
>PRK07326 short chain dehydrogenase; Provisional
Probab=62.91 E-value=12 Score=17.88 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=45.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
+.|..+++..|+--|.|.+..|. ..+-+|++..-. -..+++.. ......+++.+.+| .+.|+++++|+++...
T Consensus 4 ~GKvalITGas~GIG~aiA~~la-~~Ga~V~i~~r~--~~~l~~~~-~~l~~~~~~~~~~Dv~d~~~v~~~v~~~~~~ 77 (235)
T PRK07326 4 NGKAALVTGGSKGIGFAVAEALA-AAGYRVAICARD--ESELEAAA-QELGKRNVLGLACDVRDEADVRQAVDAHVEA 77 (235)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECC--HHHHHHHH-HHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99899993826799999999999-879999999898--89999999-9842398699996389999999999999998
No 189
>PRK06197 short chain dehydrogenase; Provisional
Probab=62.87 E-value=12 Score=17.87 Aligned_cols=70 Identities=13% Similarity=0.238 Sum_probs=44.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC------CCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHH
Q ss_conf 798207997166540467999861667855999735776------76033213113447870899717-96588899999
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR------ISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVK 202 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~------vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk 202 (469)
.+|.+.|-+|||| -|-+++..+... +-+|++. =.+. +.++++ . ..+.+|..+.+| ++++.....++
T Consensus 15 ~GK~~lITGa~sG-IG~~~A~~La~~-ga~Vil~-~R~~~k~~~a~~~i~~---~-~~~~~i~~~~lDLssl~sV~~~a~ 87 (306)
T PRK06197 15 SGRVAVVTGANTG-LGYETAAALAAK-GAHVVLA-VRNLDKGNAAAARITA---A-HPGADVTLQELDLASLASVRAAAD 87 (306)
T ss_pred CCCEEEECCCCCH-HHHHHHHHHHHC-CCEEEEE-ECCHHHHHHHHHHHHH---H-CCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 9999999168959-999999999978-4989999-7989999999999997---6-899857999766430778999999
Q ss_pred HHHC
Q ss_conf 9750
Q gi|254780465|r 203 NLFS 206 (469)
Q Consensus 203 ~~f~ 206 (469)
++..
T Consensus 88 ~~~~ 91 (306)
T PRK06197 88 ALRA 91 (306)
T ss_pred HHHH
T ss_conf 9996
No 190
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=62.77 E-value=12 Score=17.86 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCC
Q ss_conf 3888999999997317-982079971665404679998616678559997357767603321311344787089971796
Q gi|254780465|r 115 AMQFIAELMDHILEER-DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSS 193 (469)
Q Consensus 115 a~q~l~~~~~~~l~~~-~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~ 193 (469)
|.+++.+++.....+. ..+..|++| |+.|..-+.+.+..+....+-+ +.+-.++ .|..++-+.|-|.
T Consensus 99 ~~R~~~R~~~~~~~~~~~~r~lIiGA--G~ag~~l~r~~~~~~~~~pV~f-----iDdd~~~-----~g~~i~Gv~V~g~ 166 (588)
T COG1086 99 ASRLLFRALRDALQKDNRIRLLIIGA--GSAGDLLLRALRRDPEYTPVAF-----LDDDPDL-----TGMKIRGVPVLGR 166 (588)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEECC--CHHHHHHHHHHHHCCCCCEEEE-----ECCCHHH-----CCCEEECEEEECH
T ss_conf 88999999998614467886699937--6589999999974899615999-----8887365-----1887702264231
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 58889999997501
Q gi|254780465|r 194 FDDCQKIVKNLFSD 207 (469)
Q Consensus 194 FDDcq~~Vk~~f~D 207 (469)
.+ .+.+|++.-.+
T Consensus 167 ~~-i~~~v~~~~~~ 179 (588)
T COG1086 167 IE-IERVVEELGIQ 179 (588)
T ss_pred HH-HHHHHHHCCCC
T ss_conf 47-99999971876
No 191
>PRK08561 rps15p 30S ribosomal protein S15P; Reviewed
Probab=62.77 E-value=11 Score=18.13 Aligned_cols=71 Identities=23% Similarity=0.428 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCC
Q ss_conf 13889999999999986395983833999999999874799839999718843498889998087988898898874172
Q gi|254780465|r 362 RASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRP 441 (469)
Q Consensus 362 svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l~~k~ 441 (469)
..+.+|+.+.|-+..++ |+ +-+-+|+. ++..-+.|.|-+.| -|---.|.+.-|..|++|+.|..|+.+-
T Consensus 27 ~~~~~eve~~I~klaKk-G~---spS~IG~~----LRD~~gip~Vk~vt---Gkki~~iLk~~gl~p~iPEDL~~LikkA 95 (151)
T PRK08561 27 QYSPEEIEELVVELAKQ-GY---SPSMIGII----LRDQYGIPDVKLIT---GKKITEILEENGLAPEIPEDLMNLIKKA 95 (151)
T ss_pred CCCHHHHHHHHHHHHHC-CC---CHHHHHCE----ECCCCCCCCCHHHC---CCCHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 79999999999999967-99---88786101----22325665201222---7839999997699888967999999999
Q ss_pred CC
Q ss_conf 11
Q gi|254780465|r 442 EN 443 (469)
Q Consensus 442 e~ 443 (469)
-+
T Consensus 96 v~ 97 (151)
T PRK08561 96 VN 97 (151)
T ss_pred HH
T ss_conf 99
No 192
>PRK07478 short chain dehydrogenase; Provisional
Probab=62.14 E-value=13 Score=17.79 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=45.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+.|..|++..|+--|.|.+..|.. .+-+|++..-.. +..++.+ ++.. .+.+++.+..| .+.++|+++|+++..
T Consensus 5 ~gKvalVTGas~GIG~aiA~~la~-~Ga~Vvi~~r~~~~l~~~~~-ei~~-~g~~~~~~~~Dvt~~~~v~~~v~~~~~ 79 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAR-EGAKVVVGARRQAELDQLVA-EIRA-EGGEAVALAGDVRDEAYAKALVALAVE 79 (254)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 998799958876899999999998-79999999798899999999-9996-499089997689999999999999999
No 193
>PRK06434 cystathionine gamma-lyase; Validated
Probab=61.92 E-value=13 Score=17.76 Aligned_cols=19 Identities=5% Similarity=0.067 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHCCCCCC
Q ss_conf 7089999998752026510
Q gi|254780465|r 326 RNSLLVKEAFYSLENKKYF 344 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~~g~~ 344 (469)
.++.++.++.++-..-..+
T Consensus 266 ~nA~~vA~~L~~hp~V~~V 284 (384)
T PRK06434 266 KNGMELARFLRDSKKISNV 284 (384)
T ss_pred HHHHHHHHHHHHCCCCCEE
T ss_conf 9999999999809993377
No 194
>cd00318 Phosphoglycerate_kinase Phosphoglycerate kinase (PGK) is a monomeric enzyme which catalyzes the transfer of the high-energy phosphate group of 1,3-bisphosphoglycerate to ADP, forming ATP and 3-phosphoglycerate. This reaction represents the first of the two substrate-level phosphorylation events in the glycolytic pathway. Substrate-level phosphorylation is defined as production of ATP by a process, which is catalyzed by water-soluble enzymes in the cytosol; not involving membranes and ion gradients.
Probab=61.88 E-value=13 Score=17.76 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=29.9
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 89812068-23888999999997317982079971665404679998616678559997
Q gi|254780465|r 106 GPTLSFKD-IAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 106 GPT~aFKD-~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
-|..-+.| +.|...+..++..|.+. +..+--.. |..|.++.+..+.=++++|
T Consensus 57 RP~g~~~~~~SL~~va~~L~~~L~~~---V~f~~d~~---g~~~~~~i~~l~~GeI~LL 109 (397)
T cd00318 57 RPKGEPNEKYSLAPVAKALSELLGQP---VTFANDCV---GPEAEEAVEALKPGDVLLL 109 (397)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH---HCCCCCCC---CHHHHHHHHCCCCCCEEEE
T ss_conf 99998797568799999999985242---12477777---8679999852788858983
No 195
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=61.74 E-value=13 Score=17.74 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=44.8
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 2079971665404679998616678559997357-7676033213113447870899717-965888999999750
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPE-GRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~-g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
|..|++..|+--|.|.+..|. ..+-+|++..=. .+....++ .... .+.+++.+.+| .+-++|+++++++..
T Consensus 5 K~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~~~~-~~~~-~g~~~~~~~~D~~~~~~v~~~~~~~~~ 77 (258)
T PRK12429 5 KTALVTGAASGIGLEIALALA-KEGAKVVIADLNDEAAAKAAE-AIKK-AGGKAIGVAMDVTDEEAINAGIDKVVE 77 (258)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 989994887589999999999-879999999798899999999-9984-499189998358999999999999999
No 196
>PRK07035 short chain dehydrogenase; Provisional
Probab=61.73 E-value=13 Score=17.74 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=46.1
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 179820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
-++|...|-+ .|+--|.|.+..|. ..+.++++..-.. +.-.+.+ +... .+..++.+.+| ++.|+|+.+++++..
T Consensus 6 L~gKvalITG-as~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~-~i~~-~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 81 (252)
T PRK07035 6 LTGKIALVTG-ASRGIGEAIAKLLA-QQGAHVIVSSRKLDGCQAVAD-AIVA-AGGKAEALACHIGEMEQIDALFAQIRE 81 (252)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 7899899958-87499999999999-879989999798899999999-9996-499579998248999999999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780465|r 207 D 207 (469)
Q Consensus 207 D 207 (469)
.
T Consensus 82 ~ 82 (252)
T PRK07035 82 R 82 (252)
T ss_pred H
T ss_conf 8
No 197
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=61.56 E-value=13 Score=17.72 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=10.4
Q ss_pred EEEECCCHHHHHHHHHHH
Q ss_conf 997179658889999997
Q gi|254780465|r 187 VIAVQSSFDDCQKIVKNL 204 (469)
Q Consensus 187 ~i~v~G~FDDcq~~Vk~~ 204 (469)
++-++++...+..+++++
T Consensus 410 NWKMn~t~~ea~~~~~~l 427 (653)
T PRK13962 410 NWKMHKTHAEAKEFVSKL 427 (653)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 578788999999999999
No 198
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=61.04 E-value=10 Score=18.38 Aligned_cols=31 Identities=32% Similarity=0.626 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHH
Q ss_conf 658889999997501543135831134556544401105589999
Q gi|254780465|r 193 SFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVS 237 (469)
Q Consensus 193 ~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a 237 (469)
..+-.+.+++++|.|- -||||||++ .|+|-+
T Consensus 30 a~~~f~~Va~elF~dG------------~inWGRIva--l~~F~~ 60 (100)
T smart00337 30 AIELFGEVATELFSDG------------NINWGRVVA--LLSFGG 60 (100)
T ss_pred HHHHHHHHHHHHHHCC------------CCCHHHHHH--HHHHHH
T ss_conf 8999999999998269------------966999999--999999
No 199
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.00 E-value=13 Score=17.65 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=46.9
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 3179820799716654046799986166785599973577-676033213113447870899717-96588899999975
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
+-++|...|.+++ +--|.|.+..|.. .+-+|++..=.. +..+..+ ...+.+++.+.+| .+.++++.+++++.
T Consensus 3 ~l~gK~alITGgs-~GIG~aia~~la~-~G~~V~i~~r~~~~~~~~~~----~~~~~~~~~~~~Dv~~~~~~~~~~~~~~ 76 (250)
T PRK07231 3 RLEGKVAIVTGAG-SGFGEGIARRFAA-EGARVVVTDRNQEAAERVAA----EIRGGRAIAVAADVSDEADVRAAVEAAL 76 (250)
T ss_pred CCCCCEEEEECCC-CHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH----HHCCCCEEEEEEECCCHHHHHHHHHHHH
T ss_conf 7699889993888-6899999999998-79999999798899999999----8449967999930799999999999999
Q ss_pred CC
Q ss_conf 01
Q gi|254780465|r 206 SD 207 (469)
Q Consensus 206 ~D 207 (469)
..
T Consensus 77 ~~ 78 (250)
T PRK07231 77 ER 78 (250)
T ss_pred HH
T ss_conf 98
No 200
>PRK05717 oxidoreductase; Validated
Probab=60.90 E-value=13 Score=17.64 Aligned_cols=71 Identities=11% Similarity=0.084 Sum_probs=48.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEECC-CHHHHHHHHHHHHCC
Q ss_conf 9820799716654046799986166785599973577-6760332131134478708997179-658889999997501
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQS-SFDDCQKIVKNLFSD 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~G-~FDDcq~~Vk~~f~D 207 (469)
+.|+.|++..||--|.|.+..|. ..+.+|++..-.. +..++++ ..+++++.+.+|- +-++++.+|+++...
T Consensus 9 ~GKvalITG~s~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~-----~~~~~~~~~~~Dvt~~~~v~~~i~~~~~~ 81 (255)
T PRK05717 9 NGRVALVTGAARGIGLGIAAWLI-AEGWQVVLADLDRERGAKVAK-----ALGENAWFIAMDVADEAQVAAGVAEVLGQ 81 (255)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-----HHCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99889995878889999999999-879989999698899999999-----84897589993079999999999999998
No 201
>PRK05854 short chain dehydrogenase; Provisional
Probab=60.68 E-value=13 Score=17.62 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=46.7
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCC-HHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 179820799716654046799986166785599973577-676-033213113447870899717-96588899999975
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RIS-VVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS-~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
-++|.++|-+|||| -|-+++.++... +-+|++.--.- +.. -+.+.+-. ..+.++..+.+| ++++.....++++.
T Consensus 12 L~GK~~vITGa~sG-IG~~~a~~La~~-Ga~Vil~~R~~~k~~~a~~~i~~~-~~~~~v~~~~lDLs~l~sVr~~a~~~~ 88 (314)
T PRK05854 12 LSGKLAVVTGASSG-LGFGLARRLAAA-GADVILPVRNRAKGEAAVAAIRTA-VPDAKLTIRALDLSSLASVAALGEQLL 88 (314)
T ss_pred CCCCEEEECCCCCH-HHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99998999068829-999999999978-498999979999999999999986-899856999646316899999999875
Q ss_pred CC
Q ss_conf 01
Q gi|254780465|r 206 SD 207 (469)
Q Consensus 206 ~D 207 (469)
..
T Consensus 89 ~~ 90 (314)
T PRK05854 89 AE 90 (314)
T ss_pred HC
T ss_conf 30
No 202
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=60.63 E-value=13 Score=17.61 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=47.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 179820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
-++|.. +++..|+--|.|.+..|.. .+.+|++..-.. +..+.++ +.. ..+.+++.+.+| .+.++++++++++..
T Consensus 3 L~gK~~-lITGas~GIG~aiA~~la~-~Ga~V~i~~r~~~~l~~~~~-~l~-~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 78 (253)
T PRK08217 3 LKDKVI-VITGGAQGLGRAMAEYLAQ-KGAKLALIDLNQEKLEEAVA-QCA-ALGGEAEVYAANVTDEEDVEATFAQIAE 78 (253)
T ss_pred CCCCEE-EEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHH-HCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 899889-9948877899999999998-79989999799999999999-999-6599489998247999999999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780465|r 207 D 207 (469)
Q Consensus 207 D 207 (469)
.
T Consensus 79 ~ 79 (253)
T PRK08217 79 D 79 (253)
T ss_pred H
T ss_conf 8
No 203
>PRK05875 short chain dehydrogenase; Provisional
Probab=60.38 E-value=13 Score=17.58 Aligned_cols=75 Identities=11% Similarity=0.163 Sum_probs=46.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEE--ECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 79820799716654046799986166785599973577-676033213113--447870899717-96588899999975
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTT--SEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt--~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
++|.. +++..|+--|.|.+..|. ..+-++++.+-.. +.....+ ++.. ..+..++.+.+| .+.++|+++|+++.
T Consensus 6 ~gK~a-lVTGas~GIG~aiA~~la-~~Ga~Vii~~r~~~~l~~~~~-~l~~~~~~~~~v~~~~~Dvs~~~~v~~~v~~~~ 82 (277)
T PRK05875 6 QDRTY-LVTGGGSGIGKGVAAALV-AAGAAVMIVGRNPDKLAAAAE-EIEALAGGAGAVRYEPADVTNEDEVARAVDAAT 82 (277)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99989-994887499999999999-879989999798899999999-999612788628999578999999999999999
Q ss_pred CC
Q ss_conf 01
Q gi|254780465|r 206 SD 207 (469)
Q Consensus 206 ~D 207 (469)
..
T Consensus 83 ~~ 84 (277)
T PRK05875 83 AW 84 (277)
T ss_pred HH
T ss_conf 98
No 204
>PRK06172 short chain dehydrogenase; Provisional
Probab=60.28 E-value=13 Score=17.57 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=44.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|. .|++..|+--|.|.+.+|. ..+-+|++..-...-.+-...... ..+.+++.+.+| .+-++|+++++++..
T Consensus 6 ~gKv-alVTGas~GIG~aiA~~la-~~Ga~V~i~~~~~~~~~~~~~~~~-~~g~~~~~~~~Dvs~~~~v~~~~~~~~~ 80 (253)
T PRK06172 6 SGQV-ALVTGGAAGIGRATAIAFA-REGAKVVVADRDAAGGEETVALIR-EAGGEALFIACDVTRDAEVKALVEKTIA 80 (253)
T ss_pred CCCE-EEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9998-9993757689999999999-879989999798899999999999-6499379998189999999999999999
No 205
>COG0126 Pgk 3-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=60.06 E-value=14 Score=17.54 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=27.4
Q ss_pred CCCCCCCC-HHHHHHHHHHHHHHCCCCCEEEEECCCCCH-HHHHHHHHCCCCCCEEEEE
Q ss_conf 98120682-388899999999731798207997166540-4679998616678559997
Q gi|254780465|r 107 PTLSFKDI-AMQFIAELMDHILEERDHYITIVGATSGDT-GAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 107 PT~aFKD~-a~q~l~~~~~~~l~~~~~~~~il~ATSGDT-GsAa~~a~~~~~~i~v~vl 163 (469)
|+. ++|+ .|...+..++..+. +++. ++. |. |..|.++....+.=++++|
T Consensus 64 Pk~-~~~~~SL~pva~~Ls~ll~---~~V~-f~~---d~~g~~a~~~v~~l~~GevlLL 114 (395)
T COG0126 64 PKE-YSDKTSLEPVAKRLSELLG---KEVK-FVD---DCVGPEARQAVAELKDGEVLLL 114 (395)
T ss_pred CCC-CCCCCCHHHHHHHHHHHCC---CCEE-ECC---CCCCHHHHHHHHCCCCCCEEEE
T ss_conf 899-9876447999999998629---9618-544---4468799999961689867998
No 206
>PRK05876 short chain dehydrogenase; Provisional
Probab=59.83 E-value=14 Score=17.52 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=45.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+|...|-+|+|| -|.|.+..|. ..+.+|++.--...--+--..++. ..+.+++.+.+| .+.+++++++++++..
T Consensus 5 ~gKvavITGaasG-IG~a~A~~la-~~Ga~Vvi~d~~~~~l~~~~~~l~-~~g~~~~~~~~Dvt~~~~v~~l~~~~~~~ 80 (275)
T PRK05876 5 PGRGAVITGGASG-IGLATGTEFA-RRGARVVLGDVDKPGLRQAVNHLR-AEGFDVHGVMCDVRHREEVTHLADEAFRL 80 (275)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHH-HCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9987999282669-9999999999-879989999798899999999998-26984799978889999999999999998
No 207
>PRK08114 cystathionine beta-lyase; Provisional
Probab=59.74 E-value=14 Score=17.51 Aligned_cols=17 Identities=6% Similarity=0.298 Sum_probs=8.0
Q ss_pred EEECCCCHHHHHHHHHH
Q ss_conf 01068999999999996
Q gi|254780465|r 444 CKVMNKNIDEIKKFIKK 460 (469)
Q Consensus 444 ~~~l~nd~~~ik~fI~~ 460 (469)
...+.-.+|.+.+.|.+
T Consensus 370 liRlSvGlEd~eDLi~D 386 (395)
T PRK08114 370 LIRLHIGLEDVDDLIAD 386 (395)
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 79999423998999999
No 208
>PRK07024 short chain dehydrogenase; Provisional
Probab=59.62 E-value=14 Score=17.49 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=47.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 9820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+++.|.+|||| -|-|.+..|.. .+-++++.--.. +..++++ ...+.+++++.+| .+.|+++++++++..+
T Consensus 2 ~~~VlITGassG-IG~a~A~~la~-~G~~v~l~~R~~~~L~~~~~----~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~ 74 (256)
T PRK07024 2 PLKVFITGASSG-IGQALAREYAR-QGATLGLVARRTDALQAFAA----RLPKARVSVYAADVRDADALAAAAADFIAA 74 (256)
T ss_pred CCEEEEECCCHH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH----HCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 998999846029-99999999998-89989999898899999999----767997699981179999999999999998
No 209
>PRK08643 acetoin reductase; Validated
Probab=59.22 E-value=14 Score=17.45 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=45.2
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 20799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
|+.+++..++--|.|.+..|. +.+.+|++..=...-.+-...++.. .+.++..+.+| .+-|+++++++++...
T Consensus 3 KvalVTGg~~GIG~aia~~la-~~Ga~V~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~Dvt~~~~v~~~~~~~~~~ 76 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLV-EDGFKVAIVDYNEETAKAAADKLSS-DGGKAIAVKADVSNRDQVFDAVQQVVDT 76 (256)
T ss_pred CEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 499995757889999999999-8799999996988999999999985-3990999980589999999999999998
No 210
>PRK12827 short chain dehydrogenase; Provisional
Probab=59.05 E-value=14 Score=17.43 Aligned_cols=163 Identities=12% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH--HHH-CCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 8207997166540467999861667855999735776760--332-13113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQ-KQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~--~Q~-~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.|..|++..|+--|.|.+..|. ..+-+|++++=...... .++ .+.....+.+++.+.+| .+.++++++|+++...
T Consensus 6 gKvalVTGas~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~v~~~~~~ 84 (251)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLA-ADGADVIVLDIHPMRGRAEAEAVAALIEAAGGKALGLAFDVRDFAATRAALDAGVEE 84 (251)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9889996825589999999999-879989998488853289999999999964984999990389999999999999998
Q ss_pred HH----HH------CCCCCCCCCCCCHHHCCCC---HHHHHH-HHH-HHC---CCCCCEEEEEECCCHHHH-HHHHHHHH
Q ss_conf 54----31------3583113455654440110---558999-998-744---778873899634657887-88667775
Q gi|254780465|r 208 VF----FC------HSVNLSGINSINWARIMAQ---IVYYFV-SSI-ALG---SPNRNISFSVPTGNFGDI-FAGYMAKM 268 (469)
Q Consensus 208 ~~----~~------~~~~l~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~---~~~~~i~f~VPtGNfGni-~Ag~~Ak~ 268 (469)
-. +. ..-.+.-..--.|-|++-- -+|+.. +.+ .+. ..++-|+++=-+|..|.- .+.|-|-|
T Consensus 85 ~G~iDiLVNnAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~~~m~~~~~~G~IInisS~~~~~~~~~~~~Y~asK 164 (251)
T PRK12827 85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNYAASK 164 (251)
T ss_pred CCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCHHHHHHH
T ss_conf 39997999899889999903499999999999985999999999999999838994699982533355789868899999
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 08987705872367633567753222010-23455656420
Q gi|254780465|r 269 MGLPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 269 MGLPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
-|+- -|+|.+.. +|.+ .-.+.+++|-.
T Consensus 165 aav~------------~lTr~lA~-e~a~~gIrVNaV~PG~ 192 (251)
T PRK12827 165 AGLI------------GLTKTLAN-ELAPRGITVNAVAPGA 192 (251)
T ss_pred HHHH------------HHHHHHHH-HHCCCCEEEEEEEECC
T ss_conf 9999------------99999999-9650496999996488
No 211
>pfam07429 Fuc4NAc_transf 4-alpha-L-fucosyltransferase (Fuc4NAc transferase). This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (EC 2.4.1.-) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc.
Probab=58.85 E-value=12 Score=18.01 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 899999999731-798207997166540467999861667855999735776760
Q gi|254780465|r 118 FIAELMDHILEE-RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV 171 (469)
Q Consensus 118 ~l~~~~~~~l~~-~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~ 171 (469)
+--+++ |.+++ -.+++--+.||.||-.-. .+..+++..-+||=-.++.+
T Consensus 122 lKfRLf-y~lRRlAQ~rvghVfatrGDl~~~----~q~~p~v~~~lLYFPTrM~~ 171 (361)
T pfam07429 122 LKFRLF-YPLRRLAQGRVGHVFATRGDLAFF----AQRHPRVPGSLLYFPTRMDP 171 (361)
T ss_pred HHHHHH-HHHHHHHHHCCCEEEEECCCHHHH----HHHCCCCCCCEEEECCCCCH
T ss_conf 158888-999999874402599965149999----98668998617882676764
No 212
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=58.72 E-value=14 Score=17.39 Aligned_cols=169 Identities=14% Similarity=0.158 Sum_probs=80.8
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHH
Q ss_conf 9973179820799716654046799986166785599973577676033213113447870899717-965888999999
Q gi|254780465|r 125 HILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKN 203 (469)
Q Consensus 125 ~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~ 203 (469)
..+.-++|...|-+| |+.-|.|.+..|. ..+.+|++..-...-.+-..+.+ ...+.+++.+.+| .+.+++++++++
T Consensus 4 ~~f~l~gK~alVTG~-s~GIG~aiA~~la-~~Ga~Vii~~~~~~~~~~~~~~~-~~~g~~~~~~~~Dvt~~~~v~~~~~~ 80 (265)
T PRK07097 4 NMFSLKGKIALITGA-SYGIGFAIAKAYA-EAGATIVFNDIKQELVDKGLAAY-RELGIEAHGYVCDVTDEDGIQAMVAQ 80 (265)
T ss_pred CCCCCCCCEEEEECC-CCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHH-HHCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 041989998999585-7689999999999-86999999959989999999999-95499179999328999999999999
Q ss_pred HHCCHH----HHCC------CCCCCCCCCCHHHCCCCHHHH-HHH---HH-HHC--CCCCCEEEEEECCCHHHH-HHHHH
Q ss_conf 750154----3135------831134556544401105589-999---98-744--778873899634657887-88667
Q gi|254780465|r 204 LFSDVF----FCHS------VNLSGINSINWARIMAQIVYY-FVS---SI-ALG--SPNRNISFSVPTGNFGDI-FAGYM 265 (469)
Q Consensus 204 ~f~D~~----~~~~------~~l~s~NSIN~~Ril~Q~vyY-f~a---~~-~~~--~~~~~i~f~VPtGNfGni-~Ag~~ 265 (469)
+-..-. +... ..+....-=.|-|++---+.- |+. .+ .+. ..++-|+++==+|-.|.. +++|-
T Consensus 81 ~~~~~g~iDiLVnNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~ 160 (265)
T PRK07097 81 IEKEVGVIDILVNNAGIIRRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVLPSMIKKGHGKIINICSMMSELGRETVSAYA 160 (265)
T ss_pred HHHHCCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCHHHH
T ss_conf 99982999899989989999882659999999999986072899999999989980897599990521156788866899
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 7750898770587236763356775322201023455656420
Q gi|254780465|r 266 AKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 266 Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
+-|-|+- -|+|.+..--=+..-.+.+++|.+
T Consensus 161 asKaav~------------~ltr~lA~e~a~~gIrVN~V~PG~ 191 (265)
T PRK07097 161 AAKGGLK------------MLTKNIASEYGEANIQCNGIGPGY 191 (265)
T ss_pred HHHHHHH------------HHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 9999999------------999999999702495999996588
No 213
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=58.54 E-value=14 Score=17.37 Aligned_cols=14 Identities=21% Similarity=0.169 Sum_probs=7.7
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 70899999987520
Q gi|254780465|r 326 RNSLLVKEAFYSLE 339 (469)
Q Consensus 326 ~d~~~v~~~m~~l~ 339 (469)
.++..+.+|+++-.
T Consensus 258 ~nA~~lA~~L~~hp 271 (381)
T pfam01053 258 ENALKLAEFLEEHP 271 (381)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 89999999997299
No 214
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=58.53 E-value=14 Score=17.37 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8999999997317982079971665404679998616678559997
Q gi|254780465|r 118 FIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 118 ~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
|+..+-..-...+++++.|++| |-+|.|++.++....--++.|+
T Consensus 6 f~~~l~~~~~~~~~k~vlIlGa--GGaarai~~aL~~~g~~~I~i~ 49 (155)
T cd01065 6 FVRALEEAGIELKGKKVLILGA--GGAARAVAYALAELGAAKIVIV 49 (155)
T ss_pred HHHHHHHCCCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999997299857999999867--5899999999997199822886
No 215
>PRK07774 short chain dehydrogenase; Provisional
Probab=58.36 E-value=14 Score=17.35 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=45.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+..+++..|+--|.|.+.+|. ..+.+|++.+-...-.+-..+++... +.++..+.+| .+-+++++++.++..+
T Consensus 6 gK~alVTGgs~GiG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~~i~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~ 80 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALA-REGASVVVADINAEGAERVAKQIVAD-GGTAIAVQVDVSDPDSAKAMADRTVSA 80 (250)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9889997976889999999999-86999999979889999999999855-984999982589999999999999998
No 216
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=58.08 E-value=15 Score=17.32 Aligned_cols=14 Identities=7% Similarity=-0.017 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 08999999875202
Q gi|254780465|r 327 NSLLVKEAFYSLEN 340 (469)
Q Consensus 327 d~~~v~~~m~~l~~ 340 (469)
++..+.++.++-..
T Consensus 258 nA~~lA~~L~~hp~ 271 (386)
T PRK08045 258 NAQAIVKYLQTQPL 271 (386)
T ss_pred HHHHHHHHHHCCCC
T ss_conf 99999999863998
No 217
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.49 E-value=15 Score=17.25 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=50.2
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCC
Q ss_conf 546621389812068238889999999973179820799716654046799986166785599973577676033213
Q gi|254780465|r 99 FLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQ 176 (469)
Q Consensus 99 ~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~q 176 (469)
+--=|+||.|+|=|- -...++....|++ ++...||+.-=+.| ...++.|+++=+.++.||| .++|+-+|.+
T Consensus 217 ~~~~Ll~GvTGSGKT---EvYl~~i~~~L~~-GkqvLvLVPEI~Lt-pq~~~rf~~rFg~~v~vlH--S~Ls~~er~~ 287 (730)
T COG1198 217 FAPFLLDGVTGSGKT---EVYLEAIAKVLAQ-GKQVLVLVPEIALT-PQLLARFKARFGAKVAVLH--SGLSPGERYR 287 (730)
T ss_pred CCCEEEECCCCCCHH---HHHHHHHHHHHHC-CCEEEEEECCCCCH-HHHHHHHHHHHCCCHHHHC--CCCCHHHHHH
T ss_conf 665367677788589---9999999999975-98799995653456-9999999998678745314--6579278999
No 218
>PRK07831 short chain dehydrogenase; Provisional
Probab=55.98 E-value=16 Score=17.09 Aligned_cols=76 Identities=11% Similarity=0.152 Sum_probs=46.4
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7982079971665-4046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSG-DTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSG-DTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|. .+++..+| --|.|.+..|. ..+-+|++.+=+. +..+..+++........++.+.+| .+-++++++|+++..
T Consensus 15 ~gKv-alVTGgsg~GIG~a~a~~la-~~Ga~V~i~d~~~~~~~e~~~~~~~~~g~~~v~~~~~Dvt~~~~v~~~v~~~~~ 92 (261)
T PRK07831 15 AGKV-VVVTAAAGTGIGSATARRAL-EEGADVVISDIHERRLGETADELAAELGLGRVEGVVCDVTSEAQVDALIDAAVE 92 (261)
T ss_pred CCCE-EEEECCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9984-99949996478999999999-879989998087777899999999843877289997568999999999999999
Q ss_pred C
Q ss_conf 1
Q gi|254780465|r 207 D 207 (469)
Q Consensus 207 D 207 (469)
.
T Consensus 93 ~ 93 (261)
T PRK07831 93 R 93 (261)
T ss_pred H
T ss_conf 8
No 219
>PTZ00005 phosphoglycerate kinase; Provisional
Probab=55.30 E-value=16 Score=17.01 Aligned_cols=52 Identities=13% Similarity=0.217 Sum_probs=29.8
Q ss_pred CCCCCCCC-CHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 89812068-23888999999997317982079971665404679998616678559997
Q gi|254780465|r 106 GPTLSFKD-IAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 106 GPT~aFKD-~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
-|.+.++| +.|...+..|+..|. +++..+--.. |..|.++.+..+.=++++|
T Consensus 69 RP~g~~~~~~SL~pva~~L~~~L~---~~V~f~~d~~---g~~a~~~i~~l~~G~I~LL 121 (419)
T PTZ00005 69 RPDGRRVEKYSLKPVVEELEKLLG---KEVKFLSDCV---GEEVEKECANPEEGSVILL 121 (419)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHC---CCCCCCCCCC---CHHHHHHHHCCCCCCEEEE
T ss_conf 999977966583999999999868---6664565545---8899999963888858997
No 220
>TIGR01241 FtsH_fam ATP-dependent metallopeptidase HflB; InterPro: IPR005936 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. FtsH is a membrane-anchored ATP-dependent protease that degrades misfolded or misassembled membrane proteins as well as a subset of cytoplasmic regulatory proteins. FtsH is a 647-residue protein of 70 kDa, with two putative transmembrane segments towards its N terminus which anchor the protein to the membrane, giving rise to a periplasmic domain of 70 residues and a cytoplasmic segment of 520 residues containing the ATPase and protease domains . ; GO: 0004222 metalloendopeptidase activity, 0030163 protein catabolic process, 0016020 membrane.
Probab=55.19 E-value=5.2 Score=20.45 Aligned_cols=107 Identities=18% Similarity=0.326 Sum_probs=54.0
Q ss_pred CCEEE---EEECCCHHHHHH-HHHHHHC----CCC--CCEEEEE-CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHH
Q ss_conf 87389---963465788788-6677750----898--7705872-36763356775322201023455656420013401
Q gi|254780465|r 246 RNISF---SVPTGNFGDIFA-GYMAKMM----GLP--IEKLIIA-TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPS 314 (469)
Q Consensus 246 ~~i~f---~VPtGNfGni~A-g~~Ak~M----GLP--I~kli~A-tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~S 314 (469)
+.|.| .|=||.=.++.= -=+||+| |+- ++-+--. +..++++ +-.+....++..+.++-.||=.|-
T Consensus 386 Ee~~fG~~~vttGA~nD~~~AT~iAr~MVT~~GMS~klG~v~~~~~~~~~~f---lg~~~~~~~~~Se~tA~~ID~EV~- 461 (505)
T TIGR01241 386 EEIIFGEEEVTTGASNDLKQATNIARAMVTEWGMSEKLGPVAYGQSDGGEVF---LGRGFAKAKEYSEETAREIDEEVK- 461 (505)
T ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCEECCCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHH-
T ss_conf 0223078873236211589999999973153367420045122023467767---987654441221889999999999-
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHH-CCCCCCCCCHHHHHHHH
Q ss_conf 37889998709708999999875202651055202211000-12134213889999999
Q gi|254780465|r 315 NFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMS-LSFSAKRASMEDVNSVI 372 (469)
Q Consensus 315 NfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~-~~f~s~svsDeet~~~I 372 (469)
||+=+.|.+-...+.+.++.+ +.|. ..+.-..++.+|+.+.+
T Consensus 462 ---~i~~~~Y~~A~~iL~e~~~~L-------------~~~a~~Ll~~ETi~~~~~~~l~ 504 (505)
T TIGR01241 462 ---RIIEEAYKRAKQILTENRDEL-------------ELLAKELLEKETITREEIKELL 504 (505)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHCCCHHHHHHHH
T ss_conf ---999999999999998648899-------------9999988876358868999981
No 221
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=55.18 E-value=16 Score=17.00 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=44.5
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC--HHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 799716654046799986166785599973577676--033213113447870899717-9658889999997501
Q gi|254780465|r 135 TIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRIS--VVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 135 ~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS--~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+++..||.-|.+.+..+...-..+++++--...-. ..+..+-....+..++.+.+| ++-++|++++.++...
T Consensus 3 vlVTGas~GIG~~~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~~~~~g~~v~~~~~Dv~~~~~~~~~v~~~~~~ 78 (180)
T smart00822 3 YLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPAR 78 (180)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9997878799999999999879988999868987818899999999956996999980268867766677767997
No 222
>PRK08263 short chain dehydrogenase; Provisional
Probab=55.10 E-value=16 Score=16.99 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=44.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+|...|-+|+|| -|.|.+..|.. .+-+|++.-= ....+++ +....+++++.+.+| .+.++++++|+++..
T Consensus 3 gKv~lITGassG-IG~a~A~~la~-~G~~Vv~~~R--~~~~l~~--l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~ 73 (275)
T PRK08263 3 GKVWFITGASRG-FGREWTEAALE-RGDRVVATAR--DTATLAD--LAERYGDALLPLALDVTDRAAVFAAVEQAVK 73 (275)
T ss_pred CCEEEEECCCHH-HHHHHHHHHHH-CCCEEEEEEC--CHHHHHH--HHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 998999467439-99999999998-7998999979--8999999--9997599679999648999999999999999
No 223
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.91 E-value=13 Score=17.71 Aligned_cols=74 Identities=20% Similarity=0.260 Sum_probs=45.8
Q ss_pred HHHHHHCCCC-CC--EEEEECCCCCHHHHHH-HCCCHHCCC------------CCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 6677750898-77--0587236763356775-322201023------------455656420013401378899987097
Q gi|254780465|r 263 GYMAKMMGLP-IE--KLIIATNENDTLVRMF-DMGMYRPEI------------VMETTSPAMDIQIPSNFERLLFEISGR 326 (469)
Q Consensus 263 g~~Ak~MGLP-I~--kli~AtN~NdiL~rf~-~tG~y~~~~------------~~~T~SpsMDI~v~SNfERllf~l~~~ 326 (469)
-++++.=|+- -+ |+|.|||+-|+|.-.+ .-|++.+.- ..+..+-.|-+.-..|||-|.-.-.|.
T Consensus 277 eLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~ 356 (406)
T COG1222 277 ELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGF 356 (406)
T ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCC
T ss_conf 99986058897887689985588555576650887545301168989789999999876214676676999998753899
Q ss_pred CHHHHHHHHH
Q ss_conf 0899999987
Q gi|254780465|r 327 NSLLVKEAFY 336 (469)
Q Consensus 327 d~~~v~~~m~ 336 (469)
++..++....
T Consensus 357 sGAdlkaict 366 (406)
T COG1222 357 SGADLKAICT 366 (406)
T ss_pred CHHHHHHHHH
T ss_conf 5677999999
No 224
>PRK08226 short chain dehydrogenase; Provisional
Probab=54.78 E-value=16 Score=16.96 Aligned_cols=162 Identities=11% Similarity=0.158 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCCHH
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750154
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSDVF 209 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D~~ 209 (469)
+.|..+++..|+--|.|.+..|. ..+-+|++..-....-+.. .++. ..+.++..+.+| .+.++++++|+++.....
T Consensus 5 ~gKvalVTGas~GIG~aiA~~la-~~Ga~Vvi~d~~~~~~~~~-~~~~-~~g~~~~~~~~Dvsd~~~v~~~v~~~~~~~G 81 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFA-RHGANLILLDISPEIEKLA-DELC-GRGHRCTAVVADVRDPASVAAAIKRAKEKEG 81 (263)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHH-HHHH-HCCCCEEEEEEECCCHHHHHHHHHHHHHHHC
T ss_conf 99889994737799999999999-8799899996987999999-9998-3699179999417999999999999999839
Q ss_pred ----HHCCCC------CCCCCCCCHHHCCCC---HHHHHH-HHH-HHC--CCCCCEEEEEECCCH-HH-HHHHHHHHHCC
Q ss_conf ----313583------113455654440110---558999-998-744--778873899634657-88-78866777508
Q gi|254780465|r 210 ----FCHSVN------LSGINSINWARIMAQ---IVYYFV-SSI-ALG--SPNRNISFSVPTGNF-GD-IFAGYMAKMMG 270 (469)
Q Consensus 210 ----~~~~~~------l~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~--~~~~~i~f~VPtGNf-Gn-i~Ag~~Ak~MG 270 (469)
|...-. +....--.|-+++-- -+||.. +.+ .+. ..++-|+++=-+|.+ |. -.+.|-|-|-|
T Consensus 82 ~iDiLVNNAGi~~~~~~~~~~~e~w~~~~~vNl~g~f~~~~~~~p~m~~~~~G~IInisS~~g~~~~~~~~~~Y~asKaa 161 (263)
T PRK08226 82 RIDILVNNAGVCRLGNFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAA 161 (263)
T ss_pred CCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCCCCHHHHHHHHH
T ss_conf 98699989977899990129999999999997299999999999999983899899997653304489973889999999
Q ss_pred CCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 987705872367633567753222010-23455656420
Q gi|254780465|r 271 LPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 271 LPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
+- -|+|.+.. +|.+ .-.+.+++|-+
T Consensus 162 v~------------~lTr~lA~-Ela~~gIrVNaVaPG~ 187 (263)
T PRK08226 162 IV------------GLTKSLAV-EYAQSGIRVNAICPGY 187 (263)
T ss_pred HH------------HHHHHHHH-HHHHCCEEEEEEEECC
T ss_conf 99------------99999999-9624295999997588
No 225
>PRK07049 methionine gamma-lyase; Validated
Probab=54.62 E-value=17 Score=16.94 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=10.0
Q ss_pred CCCCCHHHHHH-CCCCCC
Q ss_conf 88888899986-156787
Q gi|254780465|r 10 DLSLGFCDTIL-SGLATD 26 (469)
Q Consensus 10 ~~~~~f~~a~~-~Gla~D 26 (469)
+.+..++.-++ .|..||
T Consensus 13 ~~~~~~eT~~vh~G~~p~ 30 (427)
T PRK07049 13 NHPLHPETQMMNYGYDPE 30 (427)
T ss_pred CCCCCHHHHHHCCCCCCC
T ss_conf 999998999751898988
No 226
>PRK02991 D-serine dehydratase; Provisional
Probab=54.49 E-value=17 Score=16.93 Aligned_cols=211 Identities=18% Similarity=0.237 Sum_probs=111.0
Q ss_pred CEEEEECCCCCHHHHH--HHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHH-HHCCHH
Q ss_conf 2079971665404679--9986166785599973577676033213113447870899717965888999999-750154
Q gi|254780465|r 133 YITIVGATSGDTGAAA--IKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKN-LFSDVF 209 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa--~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~-~f~D~~ 209 (469)
+..|.|.++|+-|-+. +.|-- +-++.|---.+ ..-=++.+. ....|.+++-++++-.+-.--++ .-.|+
T Consensus 159 ~y~IaVGSTGNLGLSIGImsa~L---GF~vtVHMSaD--AkqWKKd~L--R~~GV~VvE~~~DY~~AV~~gR~~a~~Dp- 230 (443)
T PRK02991 159 QYSIAVGSTGNLGLSIGIMSAAL---GFKVTVHMSAD--ARQWKKDKL--RSHGVTVVEYEGDYGVAVEEGRKAAESDP- 230 (443)
T ss_pred CCEEEEECCCCCCHHHHHHHHHH---CCCEEEEECCC--HHHHHHHHH--HHCCCEEEEECCCHHHHHHHHHHHHHCCC-
T ss_conf 77689864775203698888760---78369984303--788999999--87597899955747999999999872199-
Q ss_pred HHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHC----------CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 313583113455654440110558999998744----------7788738996346578878866777508987705872
Q gi|254780465|r 210 FCHSVNLSGINSINWARIMAQIVYYFVSSIALG----------SPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIA 279 (469)
Q Consensus 210 ~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~----------~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~A 279 (469)
.-+.+--=||.+.. |+ |--|..++. +...|+-+-.|+|=-|-=-. +| -|| |++-.
T Consensus 231 --~~~FVDDEnS~~LF--lG----YavAa~RLk~Ql~~~gi~Vd~~hPLfVYLPCGVGG~PGG--Va--fGL---K~~fG 295 (443)
T PRK02991 231 --NCYFIDDENSRTLF--LG----YAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGG--VA--FGL---KLAFG 295 (443)
T ss_pred --CCEEECCCCCHHHH--HH----HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCHHH--HH--HHH---HHHHC
T ss_conf --85675488817888--77----899899999999975985279997079953788877057--88--868---98715
Q ss_pred CCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHH--HHHH------------HCCCHHHHHHHHHHHCCCCCCC
Q ss_conf 3676335677532220102345565642001340137889--9987------------0970899999987520265105
Q gi|254780465|r 280 TNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERL--LFEI------------SGRNSLLVKEAFYSLENKKYFR 345 (469)
Q Consensus 280 tN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERl--lf~l------------~~~d~~~v~~~m~~l~~~g~~~ 345 (469)
|-+|-||. -||.||+|=+++.+-.-.- .+|+ -++-+..|...|+.+
T Consensus 296 ----d~VhcfFa---------EPthsPcmllg~~Tglhd~isV~D~Gldn~T~ADGLAVgR~S~fvg~~m~~l------- 355 (443)
T PRK02991 296 ----DHVHCFFA---------EPTHSPCMLLGVMTGLHDQISVQDIGIDNRTAADGLAVGRASGFVGRAMERL------- 355 (443)
T ss_pred ----CCEEEEEE---------CCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH-------
T ss_conf ----84389984---------7875678999986478999853212777764556640267138899999987-------
Q ss_pred CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH
Q ss_conf 5202211000121342138899999999999863959838339999999998
Q gi|254780465|r 346 IDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALAC 397 (469)
Q Consensus 346 i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~ 397 (469)
....+.++|++.......+.+..|+.+.|-.+.|+.+-...
T Consensus 356 -----------l~G~~Tv~D~~ly~~l~~l~~~e~i~lEPSA~Ag~~Gp~~l 396 (443)
T PRK02991 356 -----------LDGVYTVSDETLYDLLGLLADTEGIRLEPSALAGMAGPARV 396 (443)
T ss_pred -----------HCEEEEECHHHHHHHHHHHHHHHCCEECCHHHCCCCCHHHH
T ss_conf -----------47538816699999999998860976586454105244988
No 227
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=54.49 E-value=17 Score=16.93 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=9.4
Q ss_pred CCHHHHHHHHHHHCCC
Q ss_conf 7089999998752026
Q gi|254780465|r 326 RNSLLVKEAFYSLENK 341 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~~ 341 (469)
.++.+|.++.++-..-
T Consensus 310 ~nA~~vA~~L~~hp~V 325 (437)
T PRK05613 310 ENAIKVAEFLNNHEKV 325 (437)
T ss_pred HHHHHHHHHHHCCCCC
T ss_conf 9999999998509994
No 228
>PRK11595 gluconate periplasmic binding protein; Provisional
Probab=54.38 E-value=15 Score=17.21 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=28.9
Q ss_pred CCCHHHCCCCHHHHHHHHHHHCCCCC--CEEEEEECC---------CHHHHHHHHHHHHCCCCCC
Q ss_conf 56544401105589999987447788--738996346---------5788788667775089877
Q gi|254780465|r 221 SINWARIMAQIVYYFVSSIALGSPNR--NISFSVPTG---------NFGDIFAGYMAKMMGLPIE 274 (469)
Q Consensus 221 SIN~~Ril~Q~vyYf~a~~~~~~~~~--~i~f~VPtG---------NfGni~Ag~~Ak~MGLPI~ 274 (469)
-..+++.+++....-|.......... .+.+-||.- |=...+|-.+|+++|+|+.
T Consensus 86 ~~~l~~~la~~l~~~~~~~~~~~~~~~~D~IvPVPlh~~R~~~RGfNQa~~lA~~la~~l~~p~~ 150 (227)
T PRK11595 86 RSELASALARLLLLEVLHARRSTGLQLPDRIVSVPLWQRRHWRRGFNQSDLLCRPLAHWLGCDYD 150 (227)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf 67899999999999999850033667878487238998999873788899999999998389963
No 229
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=54.35 E-value=17 Score=16.91 Aligned_cols=72 Identities=11% Similarity=0.186 Sum_probs=45.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|.. +++..|+.-|.|.+..|.. .+-+|.+. ++-.+ +-+++....++++..+.+| .+-++++.+++++...
T Consensus 5 ~gK~a-lITG~s~GIG~aia~~~a~-~Ga~V~i~---~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 77 (245)
T PRK12936 5 TGRKA-LVTGASGGIGEEIARLLHA-QGAIVGLH---GTRVE-KLEALAAELGERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHHH-CCCEEEEE---ECCHH-HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99989-9927476899999999998-69999998---29999-999999983896699991379999999999999997
No 230
>PRK07832 short chain dehydrogenase; Provisional
Probab=54.13 E-value=17 Score=16.89 Aligned_cols=73 Identities=14% Similarity=0.225 Sum_probs=42.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
|+..|-+|+|| -|.|.+..|.. .+-++++..=.. +..++.+ ++....++.+..+++| .+.|+|+.+++++...
T Consensus 1 K~alITGassG-IG~a~A~~la~-~Ga~v~l~~r~~~~l~~~~~-~l~~~g~~~~~~~~~Dvsd~~~v~~~~~~~~~~ 75 (272)
T PRK07832 1 KRCFVTGAASG-IGRATALRLAA-QGAELFLTDRDADGLAQTVA-DARALGGTVPEHRALDISDYDAVAAFAADIHAA 75 (272)
T ss_pred CEEEEECCCHH-HHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 97999472019-99999999998-89989999898899999999-998458971478856689999999999999997
No 231
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.94 E-value=17 Score=16.87 Aligned_cols=74 Identities=9% Similarity=0.125 Sum_probs=45.7
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7982079971665-4046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSG-DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSG-DTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.+|...|-+|+|| --|.|.+.+|. ..+-+|++.|-..+.-..- .++....+. ...+.+| .+-++|+.+++++-.
T Consensus 5 ~GK~alVTGaa~~~GiG~aiA~~la-~~GA~V~i~~~~~~~~~~~-~~~~~~~~~-~~~~~~Dvs~~~~v~~~~~~~~~ 80 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQNDKLKGRV-EEFAAQLGS-DIVLQCDVAEDASIDAMFAELGK 80 (262)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHH-HHHHHHCCC-CEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9987999899997259999999999-8799999982777899999-999975498-28998889999999999999999
No 232
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=53.86 E-value=17 Score=16.86 Aligned_cols=75 Identities=11% Similarity=0.151 Sum_probs=46.5
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 7982079971665-4046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSG-DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSG-DTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|...|.+|++| --|.|.+.+|. ..+-+|++.|-..+..+ +-++.....+ +.+.+.+| .+.+++++++.++-.+
T Consensus 4 ~GK~alITGaag~~GIG~aiA~~la-~~GA~V~i~~~~~~~~~-~~~~l~~~~g-~~~~~~~Dvs~~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACF-EQGAELAFTYLNDALKK-RVEPIAQELG-SPYVYELDVSKEEHFKSLAESIKKD 80 (274)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHH-HHHHHHHHCC-CCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9987999899998379999999999-86999999848878999-9999998629-9769990289999999999999998
No 233
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128 The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM) , .; GO: 0000746 conjugation.
Probab=53.54 E-value=11 Score=18.18 Aligned_cols=94 Identities=20% Similarity=0.327 Sum_probs=62.0
Q ss_pred HHCC-CCC--CHHHHHHHHHHHHHH-------------CCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 7515-789--989999999998630-------------476678604772488254662138981206823888999999
Q gi|254780465|r 61 LFIG-QEI--KSSKLRDIVNRSYHC-------------FRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMD 124 (469)
Q Consensus 61 ~f~~-~~i--~~~~l~~ii~~ay~~-------------f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~ 124 (469)
.|+. ..+ ++.++...+.++=.. |.-.+..+++.=-+-.++ |+||-|+|=|=.+|+-| |
T Consensus 156 ~~~rG~~l~~~~~~~~~~lk~~~r~lkkqGvGnGk~Sdi~i~g~~l~K~~sE~Qh~--L~~GTtG~GKs~~lr~L---L- 229 (613)
T TIGR02759 156 QFIRGSQLASSPKELAKKLKKSKRALKKQGVGNGKASDIKIGGLPLIKKGSEVQHI--LIHGTTGSGKSVALRKL---L- 229 (613)
T ss_pred HCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCE--EEECCCCCHHHHHHHHH---H-
T ss_conf 01136423068799999999876546541677865463000780678777742252--66454174389999999---9-
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 9973179820799716654046799986166785599973577
Q gi|254780465|r 125 HILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG 167 (469)
Q Consensus 125 ~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g 167 (469)
..+++++++.+|+ |+|++-..-|. .++.+| +|=|-+
T Consensus 230 ~~iR~rGd~AIiY-----DkgC~f~~~fy-d~~~Dv-iLNP~D 265 (613)
T TIGR02759 230 RWIRQRGDRAIIY-----DKGCTFVSRFY-DPSQDV-ILNPLD 265 (613)
T ss_pred HHHHHCCCEEEEE-----ECCCCCCCCCC-CCCCCE-EECCCC
T ss_conf 9998639858998-----25742021326-888874-606744
No 234
>PRK08589 short chain dehydrogenase; Validated
Probab=53.47 E-value=17 Score=16.82 Aligned_cols=160 Identities=16% Similarity=0.233 Sum_probs=80.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCCHH
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750154
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSDVF 209 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D~~ 209 (469)
+.|..+++..|+--|.|.+..|. ..+-+|++..=..+..+..+ ++. ..+.++..+.+| .+-++|+++|.++...
T Consensus 5 ~gKvalVTGas~GIG~aiA~~la-~~Ga~Vv~~d~~~~~~~~~~-~i~-~~g~~~~~~~~Dvsd~~~v~~~v~~~~~~-- 79 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIAEAVSETVD-KIK-SNGGKAKAYHVDISDEQQVKDFASDIKEQ-- 79 (272)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHH-HHH-HCCCCEEEEEECCCCHHHHHHHHHHHHHH--
T ss_conf 97989997825699999999999-86999999838278999999-999-55994899996079999999999999998--
Q ss_pred HHCCCC-C----------CCCC--CC-CHHHCCCC---HHHHHH-HHH-HHCCC-CCCEEEEEECCCHHHH-HHHHHHHH
Q ss_conf 313583-1----------1345--56-54440110---558999-998-74477-8873899634657887-88667775
Q gi|254780465|r 210 FCHSVN-L----------SGIN--SI-NWARIMAQ---IVYYFV-SSI-ALGSP-NRNISFSVPTGNFGDI-FAGYMAKM 268 (469)
Q Consensus 210 ~~~~~~-l----------~s~N--SI-N~~Ril~Q---~vyYf~-a~~-~~~~~-~~~i~f~VPtGNfGni-~Ag~~Ak~ 268 (469)
| .++. | ..+. +. .|-|++-- -+|+.. +.+ .+.+. +.-|+++=-+|-.|.. .++|-|-|
T Consensus 80 ~-G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~f~~~~~~~p~m~~~gG~IVnisS~~g~~~~~~~~~Y~asK 158 (272)
T PRK08589 80 F-GHIDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQGGSIINTSSFSGQAADLYRSGYNAAK 158 (272)
T ss_pred H-CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCCCCCHHHHHHH
T ss_conf 2-998789989866788887100999999999999829999999999999997599079991234367789866899999
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCC
Q ss_conf 0898770587236763356775322201023455656420
Q gi|254780465|r 269 MGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 (469)
Q Consensus 269 MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsM 308 (469)
.|+- -|+|.+..--=+..-.+.+++|-.
T Consensus 159 aal~------------~lTr~lA~E~a~~gIrVNaVaPG~ 186 (272)
T PRK08589 159 GAVI------------NFTKSIAIEYGRDGIRANAIAPGT 186 (272)
T ss_pred HHHH------------HHHHHHHHHHHHCCEEEEEEEECC
T ss_conf 9999------------999999999722593999996488
No 235
>PRK06182 short chain dehydrogenase; Validated
Probab=53.37 E-value=17 Score=16.81 Aligned_cols=68 Identities=13% Similarity=0.268 Sum_probs=44.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++..+++..|+--|-|.+..|.. .+-+|++.-- ....+++ ....+++++.+| .+-++|+.+++++...
T Consensus 3 ~Kv~lITGassGIG~a~a~~la~-~G~~V~~~~r--~~~~l~~-----l~~~~~~~~~~Dvt~~~~v~~~~~~i~~~ 71 (273)
T PRK06182 3 KKVALVTGASSGIGKATARKLIA-EGFTVYGAAR--RVDKMED-----LASLGIHPLALDVTDEASMKAAVATILAE 71 (273)
T ss_pred CCEEEEECCCHHHHHHHHHHHHH-CCCEEEEEEC--CHHHHHH-----HHHCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 69899906320999999999998-7998999979--8999999-----99679979998589999999999999998
No 236
>PRK08569 rpl18p 50S ribosomal protein L18P; Reviewed
Probab=52.63 E-value=18 Score=16.73 Aligned_cols=40 Identities=23% Similarity=0.187 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCC---CCCCHHHHHHHHHHHHH
Q ss_conf 0899999987520265105520221100012134---21388999999999998
Q gi|254780465|r 327 NSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA---KRASMEDVNSVIKSVLE 377 (469)
Q Consensus 327 d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s---~svsDeet~~~Ik~~y~ 377 (469)
++..|.++|+.+++. +.+..|+. .-++.+++.+..+++.+
T Consensus 144 ~G~HIa~Y~~~lkee-----------~y~~qFs~yl~~g~~p~~l~~~~~~~~~ 186 (193)
T PRK08569 144 RGEHIAEYAESLKEE-----------LYKKRFSKYLERGLDPEDLPEHFEEVKE 186 (193)
T ss_pred CCHHHHHHHHHHHHH-----------HHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 676699999971037-----------8999999999859997788999999999
No 237
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=52.47 E-value=17 Score=16.79 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=15.5
Q ss_pred EECCCHHHHHHHH---HHHHCCCCCCEEEEECCCCCHHHH
Q ss_conf 6346578878866---777508987705872367633567
Q gi|254780465|r 252 VPTGNFGDIFAGY---MAKMMGLPIEKLIIATNENDTLVR 288 (469)
Q Consensus 252 VPtGNfGni~Ag~---~Ak~MGLPI~kli~AtN~NdiL~r 288 (469)
-+.|+|| + |.| -.|-|+.-=++.|+ ||..+.-.+
T Consensus 166 ~~~Gs~g-~-a~fSF~~~K~ittGeGG~iv-tnd~~l~~~ 202 (379)
T PRK11658 166 RHIGARG-T-AIFSFHAIKNITCAEGGLIV-TDDEELADR 202 (379)
T ss_pred CCCCCCC-C-EEEECCCCCCCCCCCCEEEE-ECCHHHHHH
T ss_conf 8667624-4-57856666678777874999-699999999
No 238
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=52.06 E-value=18 Score=16.67 Aligned_cols=75 Identities=8% Similarity=0.120 Sum_probs=47.3
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--CCCEEECCCCEEEEEEC-CCHHHHHHHHHHH
Q ss_conf 31798207997166540467999861667855999735776760332--13113447870899717-9658889999997
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ--KQMTTSEASNINVIAVQ-SSFDDCQKIVKNL 204 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~--~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~ 204 (469)
.-++|.. +++..|+--|.|.+..|. ..+.+|++..-.. ...++ +++- ..+..++.+.+| .+.|+++.+++++
T Consensus 11 ~L~gK~a-lITGgs~GIG~~ia~~la-~~Ga~V~i~~r~~--~~~~~~~~~l~-~~g~~~~~~~~Dv~~~~~v~~~~~~~ 85 (259)
T PRK06124 11 SLAGQVA-LVTGSARGLGLEIARALA-EAGAHVLVNGRNA--ARVEAAVAALR-AAGGAAEALVFDISDEEAVAAAFARI 85 (259)
T ss_pred CCCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCH--HHHHHHHHHHH-HCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 9999989-992867489999999999-8799999996988--99999999999-65995899995179999999999999
Q ss_pred HCC
Q ss_conf 501
Q gi|254780465|r 205 FSD 207 (469)
Q Consensus 205 f~D 207 (469)
..+
T Consensus 86 ~~~ 88 (259)
T PRK06124 86 DAE 88 (259)
T ss_pred HHH
T ss_conf 997
No 239
>PRK05580 primosome assembly protein PriA; Validated
Probab=51.70 E-value=18 Score=16.63 Aligned_cols=67 Identities=15% Similarity=0.107 Sum_probs=48.0
Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHC
Q ss_conf 62138981206823888999999997317982079971665404679998616678559997357767603321
Q gi|254780465|r 102 ELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQK 175 (469)
Q Consensus 102 ELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~ 175 (469)
-|.||.|+|=|- ....++....+++ ++...||+..-++| .-.++.|+.+=+-++.++ |.++|+-||.
T Consensus 189 ~LL~GvTGSGKT---evYl~li~~~l~~-GkqvLiLvPEI~lt-~q~~~rl~~~fg~~v~v~--HS~ls~~eR~ 255 (699)
T PRK05580 189 FLLDGVTGSGKT---EVYLQAIAEALAQ-GKQALVLVPEIALT-PQLLARFRARFGARVAVL--HSGLSDGERY 255 (699)
T ss_pred EEEECCCCCHHH---HHHHHHHHHHHHC-CCCEEEEECCHHHH-HHHHHHHHHHHCCCEEEE--CCCCCHHHHH
T ss_conf 787478986079---9999999999973-99789991767878-999999998709957996--4889857999
No 240
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.43 E-value=19 Score=16.60 Aligned_cols=74 Identities=9% Similarity=0.084 Sum_probs=44.0
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7982079971665-4046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSG-DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSG-DTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.+|...|.+|+++ --|.|.+.+|. ..+-+|++.|-..... ++.+-..........+.+| .+.++|+++|+++..
T Consensus 9 ~GK~alITGaag~~GIG~aiA~~la-~~GA~V~i~~~~~~~~--~~~~~l~~~~g~~~~~~~Dvtd~~~v~~~v~~~~~ 84 (272)
T PRK08159 9 QGKRGLILGVANNRSIAWGIAKACR-AAGAELAFTYQGDALK--KRVEPLAAELGAFVVGHCDVTDEASIDAVFETLEK 84 (272)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEEEECCCHHHH--HHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8999999889998689999999999-8699999974866899--99999998649818998378999999999999999
No 241
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=51.23 E-value=19 Score=16.58 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=46.3
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+.+..|++..|+--|.|.+..|. ..+-+|++.+-...- .. ++ ....++..+.+| .+-++++++|+++..
T Consensus 6 ~gKvalVTGas~GIG~aia~~la-~~Ga~V~i~~~~~~~--~~-~~---~~~~~~~~~~~Dvt~~~~v~~~v~~~~~ 75 (254)
T PRK06463 6 KGKVALITGGSRGIGRAIAEKFL-KEGAKVAILYNSSED--KA-KE---LKEKGVETFKCDVSNRDQVRKAKEEIHK 75 (254)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEECCCCHH--HH-HH---HHHCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 98989994847789999999999-889999996499789--99-99---9866988999738999999999999999
No 242
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=51.03 E-value=15 Score=17.20 Aligned_cols=60 Identities=15% Similarity=0.311 Sum_probs=38.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC------CCCHHHHCCCEEECCCCEEEEEECCCHHHH
Q ss_conf 820799716654046799986166785599973577------676033213113447870899717965888
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG------RISVVQQKQMTTSEASNINVIAVQSSFDDC 197 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g------~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDc 197 (469)
+++.|++| |..|++.+.....+.-.+-++||--. ..-+++.. .+..+.++... .|++.||
T Consensus 1 rKI~IIGa--G~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~--~~~~~~~~~i~--~~~~~~~ 66 (306)
T cd05291 1 RKVVIIGA--GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDA--LAFLPSPVKIK--AGDYSDC 66 (306)
T ss_pred CEEEEECC--CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH--HHHCCCCEEEE--ECCHHHH
T ss_conf 95999996--9889999999985799877999818987017699988701--33059973996--0887884
No 243
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=50.73 E-value=19 Score=16.53 Aligned_cols=17 Identities=6% Similarity=-0.035 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHCCCC
Q ss_conf 70899999987520265
Q gi|254780465|r 326 RNSLLVKEAFYSLENKK 342 (469)
Q Consensus 326 ~d~~~v~~~m~~l~~~g 342 (469)
.++.++.+|.++-..-.
T Consensus 265 ~nA~~lA~~L~~hp~V~ 281 (405)
T PRK08776 265 ENADAIAALLDGHAAVN 281 (405)
T ss_pred HHHHHHHHHHHHCCCCC
T ss_conf 99999999997098968
No 244
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=50.69 E-value=19 Score=16.53 Aligned_cols=95 Identities=12% Similarity=0.140 Sum_probs=49.6
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHH-----HHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 21100012134213889999999999986395983833999999-----9998747998399997188434988899980
Q gi|254780465|r 350 HLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHA-----ALACRKSSSTPMVTLATAHPSKFPDTVKAAS 424 (469)
Q Consensus 350 ~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~a-----a~~~~~~~~~p~VvLATAHPaKFpe~V~~Ai 424 (469)
...++...-.+++++.+-+.+.|.+.-..++ ---|.+-.|+-+ ...++... -+.|-..+
T Consensus 418 svtrmatlad~grit~~~ve~ei~rlr~~w~-~~~p~~l~~llg~~a~aldlfdrmq---------------le~v~~vc 481 (531)
T COG4650 418 SVTRMATLADSGRITLDVVEDEINRLRYNWQ-ESRPSALTALLGAEAEALDLFDRMQ---------------LEHVIAIC 481 (531)
T ss_pred HHHHHHHHHCCCCEEHHHHHHHHHHHHHHHH-HCCCCHHHHCCCCCHHHHHHHHHHH---------------HHHHHHHH
T ss_conf 9999988712783008878999999998764-1386023303466527765788888---------------99999998
Q ss_pred CCCCCCCHHHHHHHCCCCCEEECCCCHHHHHHHHHH
Q ss_conf 879888988988741721101068999999999996
Q gi|254780465|r 425 GIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKK 460 (469)
Q Consensus 425 g~~~~~P~~L~~l~~k~e~~~~l~nd~~~ik~fI~~ 460 (469)
-....+.+.=..|++-...-+.-.||-+.+++|+..
T Consensus 482 r~aktls~agr~lf~vsrq~ka~vndadrlrkylar 517 (531)
T COG4650 482 RQAKSLSAAGRQLFDVSRQGKASVNDADRLRKYLAR 517 (531)
T ss_pred HCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 711516577677753333036898708999999998
No 245
>KOG4270 consensus
Probab=50.54 E-value=7.1 Score=19.51 Aligned_cols=11 Identities=9% Similarity=0.398 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q ss_conf 88899999975
Q gi|254780465|r 195 DDCQKIVKNLF 205 (469)
Q Consensus 195 DDcq~~Vk~~f 205 (469)
|+|++.+++++
T Consensus 255 ~~~~q~lr~~~ 265 (577)
T KOG4270 255 DEKVQLLRQCL 265 (577)
T ss_pred HHHHHHHHHHH
T ss_conf 88899999998
No 246
>PRK08862 short chain dehydrogenase; Provisional
Probab=50.14 E-value=19 Score=16.47 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=41.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--CCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 798207997166540467999861667855999735776760332--13113447870899717-96588899999975
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ--KQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~--~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
++|.+.|-+|+|| -|.|.+..|. ..+-++++.. .+ -..+++ .++.. .+.+++.+.++ .+-++++.++.++.
T Consensus 4 k~Kv~lITGas~G-IG~aiA~~~A-~~Ga~Vii~~-r~-~~~l~~~~~~i~~-~g~~~~~~~~d~~~~~~v~~~~~~i~ 77 (227)
T PRK08862 4 KNSIILITSAGSV-LGRTISCHFA-RLGATLILCD-QD-QSALNDTYEQCSA-LTDNVYSYQLKDFSQESIRHLFDAIE 77 (227)
T ss_pred CCCEEEEECCCCH-HHHHHHHHHH-HCCCEEEEEE-CC-HHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf 9999999798879-9999999999-8799999996-99-9999999999997-58974899951661999999999999
No 247
>PRK12747 short chain dehydrogenase; Provisional
Probab=50.10 E-value=19 Score=16.46 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=41.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH-CCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 798207997166540467999861667855999735776760332-13113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ-KQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~-~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|.. +++..|+--|.|.+..|.. .+-+|++.|-...- ..++ .......+..++.+.+| -+.++|+.+++++..+
T Consensus 3 ~gKva-lITGas~GIG~aiA~~la~-~Ga~V~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 79 (252)
T PRK12747 3 KGKVA-LVTGASRGIGRAIAKRLAN-DGALVAIHYGNRKE-EAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNE 79 (252)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHHH-CCCEEEEECCCCHH-HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 95999-9948477899999999998-79999996599878-999999999964995799833635679999999999999
No 248
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=49.94 E-value=5.2 Score=20.41 Aligned_cols=156 Identities=14% Similarity=0.208 Sum_probs=93.1
Q ss_pred CCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEE-----CCCHHHHHHHHHHHHCCHH------HHCCCCCCCCCCCC
Q ss_conf 678559997357767603321311344787089971-----7965888999999750154------31358311345565
Q gi|254780465|r 155 KKRINMYILFPEGRISVVQQKQMTTSEASNINVIAV-----QSSFDDCQKIVKNLFSDVF------FCHSVNLSGINSIN 223 (469)
Q Consensus 155 ~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v-----~G~FDDcq~~Vk~~f~D~~------~~~~~~l~s~NSIN 223 (469)
..--++++.||...-.++++.--....+++|.+|.. .++.-=.+.+++.+-+-+. ++. ++---|-|+
T Consensus 340 Ire~DiLlhHPYeSF~~Vv~fl~qAA~DP~VLAIKqTLYRt~~dSpIV~ALi~AA~nGKqVtvlVELkA--RFDEE~NI~ 417 (696)
T COG0855 340 IREGDILLHHPYESFEPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVRALIDAAENGKQVTVLVELKA--RFDEEANIH 417 (696)
T ss_pred HHHCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEEHH--HCCHHHHHH
T ss_conf 863584797861312899999998614998589887787528998799999999980986899999721--137244158
Q ss_pred HHHCC----CCHHHHHHHHHHH-------CCCCCCEE--EEEECCCHHHHHHHHHHHHCCCCCCEEEEECC--CCCHHHH
Q ss_conf 44401----1055899999874-------47788738--99634657887886677750898770587236--7633567
Q gi|254780465|r 224 WARIM----AQIVYYFVSSIAL-------GSPNRNIS--FSVPTGNFGDIFAGYMAKMMGLPIEKLIIATN--ENDTLVR 288 (469)
Q Consensus 224 ~~Ril----~Q~vyYf~a~~~~-------~~~~~~i~--f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN--~NdiL~r 288 (469)
|+|-| +|+||-|..+..- .++++.+. .-+-||||-..+|-.|- -+|| ..|-. .+| +++
T Consensus 418 WAk~LE~AGvhVVyG~~glKtHAKm~lVvRrE~~~lrrY~HlGTGNYn~~TAriYT-D~sl-----~Tad~~i~~D-v~~ 490 (696)
T COG0855 418 WAKRLERAGVHVVYGVVGLKTHAKMLLVVRREGGKLRRYVHLGTGNYNPKTARLYT-DLSL-----LTADPEIGAD-VTD 490 (696)
T ss_pred HHHHHHHCCCEEEECCCCEEEEEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEE-ECHH-----HCCCHHHHHH-HHH
T ss_conf 99999867968996345523012699999830882789997147777856435664-0101-----0477888899-999
Q ss_pred HHH--CCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 753--2220102345565642001340137889998709
Q gi|254780465|r 289 MFD--MGMYRPEIVMETTSPAMDIQIPSNFERLLFEISG 325 (469)
Q Consensus 289 f~~--tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~ 325 (469)
+|+ ||-+++... .+++ ..|-|+-+-++++.+
T Consensus 491 lFn~ltGy~~~~~~-~~L~-----vsP~~~r~~ile~I~ 523 (696)
T COG0855 491 LFNFLTGYARPVRL-NKLL-----VSPFTLRARILELIE 523 (696)
T ss_pred HHHHHCCCCCCCCH-HHHE-----ECCHHHHHHHHHHHH
T ss_conf 99870177764223-3400-----683557899999999
No 249
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=49.87 E-value=20 Score=16.44 Aligned_cols=14 Identities=14% Similarity=0.109 Sum_probs=8.2
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 70899999987520
Q gi|254780465|r 326 RNSLLVKEAFYSLE 339 (469)
Q Consensus 326 ~d~~~v~~~m~~l~ 339 (469)
.++.++.+++++-.
T Consensus 278 ~nA~~vA~~L~~hp 291 (406)
T PRK07810 278 ASALRIAEFLEGHP 291 (406)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 99999999997399
No 250
>pfam11537 DUF3227 Protein of unknown function (DUF3227). This archaeal family of proteins has no known function.
Probab=49.69 E-value=13 Score=17.76 Aligned_cols=86 Identities=16% Similarity=0.216 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHH---HHHHHCCCCC
Q ss_conf 9999999999863959838339999999998747998399997188434988899980879888988---9887417211
Q gi|254780465|r 367 DVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTVKAASGIVPDCPIS---LEQMMRRPEN 443 (469)
Q Consensus 367 et~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~---L~~l~~k~e~ 443 (469)
-+.+|++....+.+ ||--.-+.+..+.. -...+-+|--.|.||.++|++..|...-.--. +..+..++-+
T Consensus 7 iitaTa~e~Lr~~~----p~~e~~LeahL~a~---~n~giEia~eDP~kFkeav~~LFGEysarl~em~ii~el~~k~~k 79 (102)
T pfam11537 7 IITATAIEALKEFA----PGFEATLEAHLNAK---LNAGIEIAGEDPAKFKEAVEELFGEFGARLFEMNIIMELHLKLDK 79 (102)
T ss_pred HHHHHHHHHHHHHC----HHHHHHHHHHHHHH---HCCCEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999858----00799999999877---566611030598999999999999989999999999999844463
Q ss_pred EEECCCCHHHHHHHHHH
Q ss_conf 01068999999999996
Q gi|254780465|r 444 CKVMNKNIDEIKKFIKK 460 (469)
Q Consensus 444 ~~~l~nd~~~ik~fI~~ 460 (469)
.+.+ +|.+++-+.|++
T Consensus 80 ~~ei-~dle~lveeikK 95 (102)
T pfam11537 80 QVEV-NDKEELIAEIKK 95 (102)
T ss_pred CCCC-CCHHHHHHHHHH
T ss_conf 2114-219999999999
No 251
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=49.69 E-value=20 Score=16.42 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHHHC-CCCCCCEEEECC-CCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 899899999999986304-766786047724-882546621389812068238889999999973179820799716654
Q gi|254780465|r 66 EIKSSKLRDIVNRSYHCF-RNAAVTPLIQLN-ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGD 143 (469)
Q Consensus 66 ~i~~~~l~~ii~~ay~~f-~~~~~~pl~~l~-~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGD 143 (469)
-|++++|.+++...|+.. +.--++-++.-+ .+-++-.=.|=|+-.|.+ .+..+++.+...+.+.++.-|+-|--
T Consensus 3 ~Is~e~L~~ll~~~~~~~~~~~~IIDcR~~ey~GGHI~gA~Nip~~~~~~----~~~~~~~~~~~~~~~~iIfhCe~Sq~ 78 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLRRDDYEGGHIKGSINLPAQSCYQ----TLPQVYALFSLAGVKLAIFYCGSSQG 78 (113)
T ss_pred CCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEECCCEECCCHHHHH----HHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 68999999998278744468579998078766887745858657475888----78999887664386499998023342
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 04679998616678
Q gi|254780465|r 144 TGAAAIKAFAGKKR 157 (469)
Q Consensus 144 TGsAa~~a~~~~~~ 157 (469)
.|..++..++...+
T Consensus 79 RGP~~A~~lr~~~r 92 (113)
T cd01443 79 RGPRAARWFADYLR 92 (113)
T ss_pred CHHHHHHHHHHHHH
T ss_conf 01999999999886
No 252
>pfam04458 DUF505 Protein of unknown function (DUF505). Family of uncharacterized prokaryotic proteins.
Probab=48.65 E-value=20 Score=16.31 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=14.7
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 213898120682388899999999731
Q gi|254780465|r 103 LFHGPTLSFKDIAMQFIAELMDHILEE 129 (469)
Q Consensus 103 LfHGPT~aFKD~a~q~l~~~~~~~l~~ 129 (469)
+|-=||-.=+=|++.-+|+.+...++.
T Consensus 189 a~S~P~~~g~~ya~T~lgq~v~~al~~ 215 (591)
T pfam04458 189 AISPPTEKGDAYALTGLGQEVLKALRK 215 (591)
T ss_pred EECCCCCCCCEEEEHHHHHHHHHHHHH
T ss_conf 753687788754416889999999983
No 253
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=48.65 E-value=20 Score=16.31 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 17982079971665404679998616678559997
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
-.++++.|+|| |+.|..++.+++...--++.|.
T Consensus 10 l~~~~vlVIGa--G~~~~~~~~~L~~~g~~~i~v~ 42 (134)
T pfam01488 10 LKGKKVLLIGA--GEMARLAAKHLLSKGAKKITIA 42 (134)
T ss_pred CCCCEEEEECC--CHHHHHHHHHHHHCCCCEEEEE
T ss_conf 14898999996--0999999999997599889995
No 254
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=48.34 E-value=21 Score=16.28 Aligned_cols=160 Identities=11% Similarity=0.209 Sum_probs=78.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCCH
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-96588899999975015
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSDV 208 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D~ 208 (469)
++|...|-+| |+--|.|.+..|. ..+-+|++..-. +-...+.....+.+++.+.+| .+.|+++++|+++...-
T Consensus 4 ~gKvalVTGa-s~GIG~aia~~la-~~Ga~V~i~d~~----~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~v~~~~~~~ 77 (256)
T PRK07067 4 QGKVALLTGA-ASGIGEAVAQRYL-REGARVVLADIK----PARAALAALEIGPAAVAVSLDVTRQDSIDRIVAAAVERF 77 (256)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHH-HCCCEEEEEECC----HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 9988999376-7789999999999-879999999798----899999999819975999984899999999999999981
Q ss_pred H----HHCCC------CCCCCCCCCHHHCCCC---HHHHHH-HHH-HHCC---CCCCEEEEEECCCHHHHH-HHHHHHHC
Q ss_conf 4----31358------3113455654440110---558999-998-7447---788738996346578878-86677750
Q gi|254780465|r 209 F----FCHSV------NLSGINSINWARIMAQ---IVYYFV-SSI-ALGS---PNRNISFSVPTGNFGDIF-AGYMAKMM 269 (469)
Q Consensus 209 ~----~~~~~------~l~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~~---~~~~i~f~VPtGNfGni~-Ag~~Ak~M 269 (469)
. +...- .+.-..--.|-|++-- -+||.. +.+ .+.+ .++-|+++=-+|..|.-. +.|-|-|.
T Consensus 78 G~iDiLVNNAGi~~~~~~~~~~~e~~~~~~~vNl~g~f~~~~~~~~~m~~~~~~G~IVnisS~~g~~~~~~~~~Y~asKa 157 (256)
T PRK07067 78 GGIDILVNNAALFDMAPILEISRDVYDRLFAVNVKGLFFLMQAVAQHMVEQGRGGKIINMASQAGRRGEALVSHYCATKA 157 (256)
T ss_pred CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCCCCCHHHHHHHH
T ss_conf 99989998998899988134999999999998517789999999999998089955999841643668988668999999
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCC
Q ss_conf 89877058723676335677532220102345565642
Q gi|254780465|r 270 GLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPA 307 (469)
Q Consensus 270 GLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~Sps 307 (469)
|+- -|+|.+...-=...-.+.+++|-
T Consensus 158 av~------------~lTr~lA~ela~~gIrVNaV~PG 183 (256)
T PRK07067 158 AVI------------SYTQSAALALARHGINVNAIAPG 183 (256)
T ss_pred HHH------------HHHHHHHHHHHHCCEEEEEEEEC
T ss_conf 999------------99999999970429289999548
No 255
>PRK08628 short chain dehydrogenase; Provisional
Probab=47.81 E-value=21 Score=16.23 Aligned_cols=73 Identities=12% Similarity=0.096 Sum_probs=45.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.+..|++..|+--|.|.+..|... +-++++..-... ..+...-....+.++..+.+| .+.+|++++|+++...
T Consensus 7 gKvalVTG~s~GIG~a~a~~la~~-Ga~v~i~~~~~~--~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~v~~~~~~ 80 (258)
T PRK08628 7 DKVVIVTGGASGIGAAISLRLAEE-GAIPVVFGRSAP--DDEFAEELRALQPRAEFVQVDLQDDAQCRDAVAQTVAK 80 (258)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCC--HHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 998999277778999999999987-998999808802--39999999953997899995279999999999999998
No 256
>PRK08703 short chain dehydrogenase; Provisional
Probab=47.67 E-value=21 Score=16.21 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEECC---CHHHHHHHHHHHH
Q ss_conf 79820799716654046799986166785599973577-6760332131134478708997179---6588899999975
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQS---SFDDCQKIVKNLF 205 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~G---~FDDcq~~Vk~~f 205 (469)
++|.+.|-+|++ --|.|.+..|.. .+-+|++..-.. +..+..+ ++....+..++.+.++- +-+++++++..+.
T Consensus 5 ~gK~~lITGas~-GIG~aiA~~la~-~Ga~V~l~~r~~~~l~~~~~-~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 81 (239)
T PRK08703 5 SDKTILVTGASQ-GLGEQVAKAYAA-AGATVILVARHQKKLEKVYD-AIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIA 81 (239)
T ss_pred CCCEEEEECCCC-HHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 969899948862-899999999998-79989999798889999999-999737995499998505630789999999999
No 257
>PRK06346 consensus
Probab=47.31 E-value=21 Score=16.18 Aligned_cols=72 Identities=17% Similarity=0.267 Sum_probs=44.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-96588899999975
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
++| ..|++..|+--|.|.+..|. ..+-+|++..=.. +..+..+ ++- ..+.+++.+.+| .+.++|+++++++.
T Consensus 4 ~gK-v~lITGgs~GIG~a~a~~la-~~Ga~V~i~~r~~e~~~~~~~-~l~-~~~~~~~~~~~Dv~~~~~v~~~i~~~~ 77 (251)
T PRK06346 4 KGK-VAIVTGAASGMGKSIAELFA-KEGAKVVVADLNLERAQKVVE-EIT-SNGGTAIAVVANVTKQEDIENMVDTAV 77 (251)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHH-HCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998-89994757889999999999-879989999798999999999-999-639908999778898999999999999
No 258
>PRK07245 consensus
Probab=47.10 E-value=6.5 Score=19.77 Aligned_cols=55 Identities=13% Similarity=0.199 Sum_probs=40.3
Q ss_pred EEEECCCCCEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
Q ss_conf 047724882546621389812-06823888999999997317982079971665404
Q gi|254780465|r 90 PLIQLNANEFLLELFHGPTLS-FKDIAMQFIAELMDHILEERDHYITIVGATSGDTG 145 (469)
Q Consensus 90 pl~~l~~~~~vlELfHGPT~a-FKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTG 145 (469)
|--+.+.+--+||+--|.-+- --|+|. .|-+|+..+.++++=++-|+-.+.||.|
T Consensus 88 l~~~~D~~naileIrAGaGG~EA~dwA~-mL~RMY~R~aE~~gwk~evl~~~~ge~~ 143 (337)
T PRK07245 88 LSEPYDHNNAILEIHPGSGGTEAQDWGD-LLLRMYTRFGNANGFKVEVLDYQAGDEA 143 (337)
T ss_pred CCCCCCCCCEEEEEECCCCCHHHHHHHH-HHHHHHHHHHHHCCCCHHHHHCCCCCCC
T ss_conf 6998767883799978989679999999-9999999999976994012106886545
No 259
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=46.82 E-value=22 Score=16.13 Aligned_cols=132 Identities=11% Similarity=0.165 Sum_probs=65.0
Q ss_pred HHHHHHHCC-CCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCC-CCCCCCCC
Q ss_conf 679998616-6785599973577676033213113447870899717965888999999750154313583-11345565
Q gi|254780465|r 146 AAAIKAFAG-KKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVN-LSGINSIN 223 (469)
Q Consensus 146 sAa~~a~~~-~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~-l~s~NSIN 223 (469)
....+-|.. .+.++-++..=.|++...=- ++.. +++.+.=|+-+-+-|+.+-.++ .+..- -+-+.+.+
T Consensus 219 ~~~~~~~g~~~~~~~~v~I~Ggg~ig~~la-~~L~---~~~~v~iIe~d~~~~~~la~~l------~~~~Vi~GD~td~~ 288 (455)
T PRK09496 219 RRVMSELGRLEKPVKRIMIAGGGNIGLYLA-KLLE---KGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQE 288 (455)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCHHHHHHH-HHHH---CCCEEEEECCCHHHHHHHHHHC------CCCEEEECCCCCHH
T ss_conf 999998586546665189987869999999-9874---0883899708989999999747------85399978876889
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCC
Q ss_conf 44401105589999987447788738996346578878866777508987705872367633567753222010234556
Q gi|254780465|r 224 WARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMET 303 (469)
Q Consensus 224 ~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T 303 (469)
. | .+..-..-...+++-.-.=-|+.++.+||++|.+ |.|+-.|..+..+-| +.-.+-.+
T Consensus 289 ~---L----------~e~gi~~aD~~ia~T~~De~Ni~~~llAk~~g~~--~~ia~v~~~~y~~l~------~~lgid~~ 347 (455)
T PRK09496 289 L---L----------EEEGIDEADAFIALTNDDEANILSSLLAKRLGAK--KVIALINRSAYVDLV------QGLGIDIA 347 (455)
T ss_pred H---H----------HHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC--CEEEEECCHHHHHHH------HHCCCCEE
T ss_conf 9---9----------7636455648999038818899999999873997--368884466788765------32488657
Q ss_pred CCCCC
Q ss_conf 56420
Q gi|254780465|r 304 TSPAM 308 (469)
Q Consensus 304 ~SpsM 308 (469)
+||..
T Consensus 348 isp~~ 352 (455)
T PRK09496 348 ISPRQ 352 (455)
T ss_pred ECHHH
T ss_conf 88899
No 260
>PRK07791 short chain dehydrogenase; Provisional
Probab=46.69 E-value=22 Score=16.11 Aligned_cols=74 Identities=19% Similarity=0.256 Sum_probs=43.0
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEC--------CCCCCCHHHH--CCCEEECCCCEEEEEEC-CCHHHHHH
Q ss_conf 9820799716654046799986166785599973--------5776760332--13113447870899717-96588899
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILF--------PEGRISVVQQ--KQMTTSEASNINVIAVQ-SSFDDCQK 199 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vly--------P~g~vS~~Q~--~qmtt~~~~Nv~~i~v~-G~FDDcq~ 199 (469)
+.|..|++..++--|.|.+..|. ..+-+|++-. +...- ..|+ .++... +..+..+..| .+.|+|++
T Consensus 5 ~GKvalVTGas~GIG~aiA~~lA-~~GA~Vvi~D~~~~~~~~~~~~~-~a~~~~~ei~~~-g~~~~~~~~Dvsd~~~v~~ 81 (285)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFA-AEGARVVVNDIGVGLDGSPASGG-AAQAVVDEITAA-GGEAVANGDDIADWDQAAN 81 (285)
T ss_pred CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCHH-HHHHHHHHHHHC-CCEEEEEECCCCCHHHHHH
T ss_conf 99879992867689999999999-86999999837643122445679-999999999974-9839999689999999999
Q ss_pred HHHHHHCC
Q ss_conf 99997501
Q gi|254780465|r 200 IVKNLFSD 207 (469)
Q Consensus 200 ~Vk~~f~D 207 (469)
+|+++...
T Consensus 82 ~v~~~~~~ 89 (285)
T PRK07791 82 LVDAAVET 89 (285)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 261
>PRK12829 short chain dehydrogenase; Provisional
Probab=46.51 E-value=22 Score=16.09 Aligned_cols=157 Identities=15% Similarity=0.278 Sum_probs=80.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++| ..+++..|+--|.|.+..|. ..+-+|++..-.. +..+.++ ...+.+++.+.+| .+.++|+++|+++...
T Consensus 10 ~GK-valVTGgs~GIG~aiA~~la-~~Ga~V~i~~r~~~~~~~~~~----~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~ 83 (264)
T PRK12829 10 DGL-RVLVTGGASGIGRAIAEAFA-EAGARVHVCDVSEAALAATAA----RLPGAKVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH----HCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 999-79994737689999999999-879989999799899999999----747997599996289999999999999997
Q ss_pred HHHHCCCC--------------CCCCCCCCHHHCCCC---HHHHHH-HHH-HHCCC--CCCE-EEEEECCCHHHH-HHHH
Q ss_conf 54313583--------------113455654440110---558999-998-74477--8873-899634657887-8866
Q gi|254780465|r 208 VFFCHSVN--------------LSGINSINWARIMAQ---IVYYFV-SSI-ALGSP--NRNI-SFSVPTGNFGDI-FAGY 264 (469)
Q Consensus 208 ~~~~~~~~--------------l~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~~~--~~~i-~f~VPtGNfGni-~Ag~ 264 (469)
| .++. +....-=.|-|++-- -+||+. +.+ .+.+. ++.| +++--+|..|.- .+.|
T Consensus 84 --~-G~iDiLVNNAGi~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~~IinisS~~~~~~~~~~~~Y 160 (264)
T PRK12829 84 --F-GGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLRASGHGGVIIALSSVAGRLGYPGRTPY 160 (264)
T ss_pred --C-CCCCEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCCCHHH
T ss_conf --3-9998999899899999980239999999999998487899999999999873998089998026547799886789
Q ss_pred HHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 777508987705872367633567753222010-23455656420
Q gi|254780465|r 265 MAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 265 ~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
-|-|-|+- -|+|.+.. +|-+ .-.+.+++|-+
T Consensus 161 ~asKaal~------------~ltr~lA~-E~a~~gIrVNaV~PG~ 192 (264)
T PRK12829 161 AASKWAVV------------GLVKSLAI-ELGPLGIRVNAILPGI 192 (264)
T ss_pred HHHHHHHH------------HHHHHHHH-HHHHHCEEEEEEEECC
T ss_conf 99999999------------99999999-9854094999886288
No 262
>TIGR01817 nifA Nif-specific regulatory protein; InterPro: IPR010113 This entry represents NifA, a DNA-binding regulatory protein for nitrogen fixation. Not included in this group are: the homologue in Aquifex aeolicus (which lacks nitrogenase), transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. In diazotrophic proteobacteria, the sigma54-dependent activator NifA activates transcription of the nif (nitrogen fixation) genes by a conserved mechanism common to members of the enhancer binding protein family. Although NifA proteins have similar domain structures, both transcriptional regulation of nifA expression and posttranslational regulation of NifA activity by oxygen and fixed nitrogen vary significantly from one organism to another. In Klebsiella pneumoniae and Azotobacter vinelandii, nifA is co-ordinately transcribed with a second gene, nifL, whose product inhibits NifA activity in response to oxygen and fixed nitrogen .; GO: 0003677 DNA binding, 0016563 transcription activator activity, 0009399 nitrogen fixation.
Probab=46.34 E-value=12 Score=17.89 Aligned_cols=113 Identities=17% Similarity=0.275 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHC-----------C----CCCC-EEEEECCCCCHHHHHHHCCCHH-----CCCCCCCCCCCCCCCCHHHH
Q ss_conf 887886677750-----------8----9877-0587236763356775322201-----02345565642001340137
Q gi|254780465|r 258 GDIFAGYMAKMM-----------G----LPIE-KLIIATNENDTLVRMFDMGMYR-----PEIVMETTSPAMDIQIPSNF 316 (469)
Q Consensus 258 Gni~Ag~~Ak~M-----------G----LPI~-kli~AtN~NdiL~rf~~tG~y~-----~~~~~~T~SpsMDI~v~SNf 316 (469)
|-|...|=||.+ | |-++ |||||||+| |..-...|.++ +-.|++=.=|.. =
T Consensus 316 GEISPaFQAKLLRVLQEGEFERVGG~~TlKVdVRlvaATNrd--LE~aV~~GeFRaDLYYRinVvPl~lPPL-------R 386 (574)
T TIGR01817 316 GEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRD--LEEAVAKGEFRADLYYRINVVPLILPPL-------R 386 (574)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCEEEEEEEEEEECCCCC--HHHHHHCCCCCCHHHHHHHHHHHHCCCC-------C
T ss_conf 467856888998875210025327872488736788613735--5889727897302355442223407877-------7
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCC---CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHH-HCCCEECCC
Q ss_conf 8899987097089999998752026510---552022110001213421388999999999998-639598383
Q gi|254780465|r 317 ERLLFEISGRNSLLVKEAFYSLENKKYF---RIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLE-KSNYLVDPH 386 (469)
Q Consensus 317 ERllf~l~~~d~~~v~~~m~~l~~~g~~---~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~-~~gyiiDPH 386 (469)
|| .+.=+...+.+.++|..++.= .+.+..++.|.+.-+.+=| -|-.++|+++-- ..+-.|+||
T Consensus 387 ER-----~~DIP~LA~~fL~kf~~en~R~mL~~~~~Ai~~Lm~c~wPGNV--RELENC~eRtAtLs~~~~It~~ 453 (574)
T TIGR01817 387 ER-----REDIPLLAEAFLEKFNRENGRPMLTLSPSAIRVLMSCKWPGNV--RELENCVERTATLSRSGTITRS 453 (574)
T ss_pred CC-----CCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHCCCCCCCC--EEHHHHHHHHHHHCCCCCCCCC
T ss_conf 87-----3116899999999876651872032267899897517899974--0044378778754168851642
No 263
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain; InterPro: IPR012821 Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by IPR012822 from INTERPRO..
Probab=46.30 E-value=12 Score=18.03 Aligned_cols=57 Identities=25% Similarity=0.429 Sum_probs=36.6
Q ss_pred CHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHH---------HHHHHHCCCCCCEEEE-ECCCCCH
Q ss_conf 5444011055899999874477887389963465788788---------6677750898770587-2367633
Q gi|254780465|r 223 NWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFA---------GYMAKMMGLPIEKLII-ATNENDT 285 (469)
Q Consensus 223 N~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~A---------g~~Ak~MGLPI~kli~-AtN~Ndi 285 (469)
|-.-.|+|+ +-.|.+.+..+.++-=.|.|=+|.= =|+|.|.|||.++|.| +.-.||-
T Consensus 126 ~~~p~l~~~------~~~Lr~~~~~~~~~ls~~~FLDv~P~RAS~~~A~Ryls~~wGlpLe~~Lvag~~g~De 192 (241)
T TIGR02471 126 EDEPSLKQI------RQRLRQQELAVKVILSLGAFLDVLPLRASKGLALRYLSYRWGLPLEQLLVAGDSGNDE 192 (241)
T ss_pred CCCCCHHHH------HHHHHHCCCEEEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCHHHEEEEECCCCCH
T ss_conf 778787899------9998615874779860467454342037704899999998279745814540688854
No 264
>PRK02287 hypothetical protein; Provisional
Probab=45.71 E-value=22 Score=16.11 Aligned_cols=64 Identities=13% Similarity=0.238 Sum_probs=34.1
Q ss_pred EEEEECCCCC--CCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCC
Q ss_conf 5999735776--760332131134478708997179658889999997501543135831134556544401
Q gi|254780465|r 159 NMYILFPEGR--ISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIM 228 (469)
Q Consensus 159 ~v~vlyP~g~--vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril 228 (469)
+-+||-|.++ +|+--+. +....| ...||++.--.+........-.. +.-=.|.++|.+||||.-
T Consensus 39 ~givL~P~~~~~lsp~D~~-iv~~~G----i~vvDCSW~~~~~~~~~~~~~~~-R~LP~LvAaNPVNYGkP~ 104 (169)
T PRK02287 39 GAIVLDPFAEKALSPADRE-IVEKRG----IVALDCSWEKAERVFFFKLAGNH-RRLPFLLAANPVNYGKPC 104 (169)
T ss_pred CEEEECCCCCCEECHHHHH-HHHHCC----EEEEECCHHHHHHHHHHHCCCCC-CCCCHHHCCCCCCCCCCC
T ss_conf 8089779978237873688-998688----78998825776666665136876-666503124886668876
No 265
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=44.87 E-value=23 Score=15.93 Aligned_cols=129 Identities=13% Similarity=0.112 Sum_probs=62.1
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECC--C------CCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHH
Q ss_conf 207997166540467999861667855999735--7------76760332131134478708997179658889999997
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFP--E------GRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNL 204 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP--~------g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~ 204 (469)
++.|++| +|..|++.+.......-.+=++||- + |..-+++ +..+..+.++++ ...++.+||
T Consensus 2 KV~IiGA-aG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~--~~~~~~~~~~~i-~~~~d~~~~------- 70 (309)
T cd05294 2 KVSIIGA-SGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY--DALAAAGIDAEI-KISSDLSDV------- 70 (309)
T ss_pred EEEEECC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHH--CCCCCCCCCCEE-EECCCHHHH-------
T ss_conf 8999999-97699999999983799875999605564342311235545--034336887679-827988996-------
Q ss_pred HCCHHHHCCCCCCCCCCCCHHHCCCCH--------HHHHHH-HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 501543135831134556544401105--------589999-98744778873899634657887886677750898770
Q gi|254780465|r 205 FSDVFFCHSVNLSGINSINWARIMAQI--------VYYFVS-SIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEK 275 (469)
Q Consensus 205 f~D~~~~~~~~l~s~NSIN~~Ril~Q~--------vyYf~a-~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~k 275 (469)
.|.+. -+.++. ..|--+|. +=-+-. .-++.+.... .+.+=.+|=-|+.+.+..|..|+|=+|
T Consensus 71 -~daDi----vVitAG---~~rk~g~tR~dLl~~Na~I~~~i~~~i~~~~p~-~ivivvtNPvDv~t~~~~k~sg~p~~r 141 (309)
T cd05294 71 -AGSDI----VIITAG---VPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPD-TKILVVTNPVDVMTYKALKESGFDKNR 141 (309)
T ss_pred -CCCCE----EEECCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHCCCCHHC
T ss_conf -89999----998789---889959987899998999999999876426998-499976896577999999966988203
Q ss_pred EEEECC
Q ss_conf 587236
Q gi|254780465|r 276 LIIATN 281 (469)
Q Consensus 276 li~AtN 281 (469)
++-...
T Consensus 142 viG~gt 147 (309)
T cd05294 142 VFGLGT 147 (309)
T ss_pred EEEECC
T ss_conf 887121
No 266
>TIGR01512 ATPase-IB2_Cd cadmium-translocating P-type ATPase; InterPro: IPR006404 These sequences describe the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterised members include P37617 from SWISSPROT from Escherichia coli, Q10866 from SWISSPROT from Mycobacterium tuberculosis and Q59998 from SWISSPROT from Synechocystis PCC6803. The cadmium P-type ATPases have been characterised as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species . This family and that describing the copper-ATPases (IPR006403 from INTERPRO) are well separated, and thus the copper-ATPases can be typed as IB1 and the cadmium-ATPases as IB2. ; GO: 0005524 ATP binding, 0016818 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=44.18 E-value=12 Score=18.00 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=8.4
Q ss_pred EEEEEECCCHHHHHH
Q ss_conf 389963465788788
Q gi|254780465|r 248 ISFSVPTGNFGDIFA 262 (469)
Q Consensus 248 i~f~VPtGNfGni~A 262 (469)
+..|+|..-++=|..
T Consensus 200 L~iS~P~A~~~ai~~ 214 (494)
T TIGR01512 200 LVISTPVAYLAAISA 214 (494)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899978999999865
No 267
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=43.59 E-value=24 Score=15.89 Aligned_cols=67 Identities=21% Similarity=0.264 Sum_probs=43.5
Q ss_pred HHHCCCCCEEEEEC-C-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEE-----CCCCEEEEEECCCH
Q ss_conf 97317982079971-6-6540467999861667855999735776760332131134-----47870899717965
Q gi|254780465|r 126 ILEERDHYITIVGA-T-SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS-----EASNINVIAVQSSF 194 (469)
Q Consensus 126 ~l~~~~~~~~il~A-T-SGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~-----~~~Nv~~i~v~G~F 194 (469)
.+++.+..+.|++| | ||.|=+|.+-++.+ +.+++.+||-.-...-|.+.+... .+.++....+.|..
T Consensus 8 ~~~~~~~~~ivitAPTgsGKT~Aa~lp~l~~--~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~~~~~~~~~ 81 (357)
T TIGR03158 8 ALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKAT 81 (357)
T ss_pred HHHCCCCCEEEEECCCCCCHHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 9976899869998999856999999999738--9879997778999999999999999874423464402114643
No 268
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=43.09 E-value=25 Score=15.74 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=45.0
Q ss_pred CCCCEEEEECCCC-CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 7982079971665-4046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSG-DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSG-DTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|+..|.+|+|| --|.|.+..|. ..+.+|++.|=.....+.- ++.....+ +...+.+| .+.++|+.+|.++...
T Consensus 6 ~GK~alITGaa~~~GIG~aiA~~La-~~GA~V~i~~~~e~~~~~~-~~~~~~~g-~~~~~~~Dvsd~~~v~~~v~~~~~~ 82 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLA-AQGAELAFTYQGDALGKRV-KPLAESLG-SDLVLPCDVEDIASVDAVFEALEKK 82 (271)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHH-HHHHHHCC-CCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9997999799998549999999999-8699999981866889999-99999649-8189983799999999999999998
No 269
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=42.91 E-value=25 Score=15.72 Aligned_cols=64 Identities=22% Similarity=0.300 Sum_probs=36.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCH--HHH-CCCEEECCCCEEEEEECCCHHHH
Q ss_conf 79820799716654046799986166785599973577-6760--332-13113447870899717965888
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISV--VQQ-KQMTTSEASNINVIAVQSSFDDC 197 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~--~Q~-~qmtt~~~~Nv~~i~v~G~FDDc 197 (469)
..+++.|++| |..|++.+.......-.+ ++||=-. +... ... .+..+..+.+..+ .-.|+++||
T Consensus 6 ~~~KV~IIGa--G~VG~~~A~~l~~~~l~e-ivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v-~~~~dy~~~ 73 (322)
T PTZ00082 6 PRKKISLIGS--GNIGGVMAYLIQLKNLAD-VVLFDIVPNIPAGKALDIMHANVMAGSNCKV-IGTNSYDDI 73 (322)
T ss_pred CCCCEEEECC--CHHHHHHHHHHHCCCCCE-EEEEECCCCCCHHHHHHHHCCCCCCCCCCEE-EECCCHHHH
T ss_conf 7982999896--989999999996389977-9999788980088999876636446888579-837999997
No 270
>PRK07775 short chain dehydrogenase; Provisional
Probab=42.68 E-value=25 Score=15.70 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=44.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.+|..+++..|+--|.|.+..|. ..+.+|++..=.. +..++.+ ++.. .+..++.+.+| .+.++++.+|+++..
T Consensus 9 ~~KtAlVTGAssGIG~aiA~~la-~~G~~V~l~~R~~e~l~~~~~-~l~~-~g~~~~~~~~Dvtd~~~v~~~v~~~~~ 83 (275)
T PRK07775 9 ARRPAIVAGASSGIGAATAIELA-AHGFPVALGARRVEKCEEIVD-KIRA-DGGEAVAFPLDVTDPDSVKSFVAQATE 83 (275)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CCCCEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 99979994623599999999999-879989999898999999999-9996-499489999128999999999999999
No 271
>PRK06179 short chain dehydrogenase; Provisional
Probab=42.57 E-value=25 Score=15.69 Aligned_cols=67 Identities=12% Similarity=0.202 Sum_probs=43.1
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++++.+++..|+--|.|.+..|.. .+.+|+..--. ....+ ...+++.+.+| .+-++|+.+++++...
T Consensus 3 ~~KvalITGassGIG~a~A~~la~-~G~~V~~~~r~--~~~~~-------~~~~~~~~~~Dvtd~~~v~~~~~~~~~~ 70 (270)
T PRK06179 3 NKKVALVTGASSGIGRATAEALAR-AGYRVFGTSRN--PARAT-------PIPGVELLELDVTDDASVQAAVQEVIAR 70 (270)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECC--HHHHH-------CCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 995899907246999999999998-79999999689--77730-------5489789991079999999999999998
No 272
>TIGR00457 asnS asparaginyl-tRNA synthetase; InterPro: IPR004522 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . AsparaginyltRNA synthetase (6.1.1.22 from EC) is an alpha2 dimer that belongs to class IIb. There is a striking similarity between asparaginyl-tRNA synthetases and archaeal/eukaryotic type aspartyl-tRNA synthetases (IPR004523 from INTERPRO) and a striking divergence of bacterial type aspartyl-tRNA synthetases (IPR004524 from INTERPRO). This family, AsnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.; GO: 0000166 nucleotide binding, 0004816 asparagine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006421 asparaginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=42.48 E-value=25 Score=15.68 Aligned_cols=290 Identities=15% Similarity=0.163 Sum_probs=126.6
Q ss_pred CCHHHHHHHCCCCHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHH-HHCCCCCCC----EEEECCCCCEEEEECCCCCCCC
Q ss_conf 898899877099989999-9999875157899899999999986-304766786----0477248825466213898120
Q gi|254780465|r 38 LSEKEIKDLRGLSYQEIA-LFIFRLFIGQEIKSSKLRDIVNRSY-HCFRNAAVT----PLIQLNANEFLLELFHGPTLSF 111 (469)
Q Consensus 38 ~~~~~~~~~~~~sy~e~a-~~il~~f~~~~i~~~~l~~ii~~ay-~~f~~~~~~----pl~~l~~~~~vlELfHGPT~aF 111 (469)
=+.+.|.+.+.|-++--. .+|+ .+|..|.+|. ..|...+-+ |+-.=++-.--=|||.=-||-|
T Consensus 124 hs~efLr~~~HLr~Rt~~~~Avm-----------rvR~~l~~ai~~yF~~~gF~~V~~PilT~~d~EGAGElF~v~TLdl 192 (495)
T TIGR00457 124 HSLEFLRDIAHLRLRTNTLGAVM-----------RVRNALSQAIHEYFQKNGFVKVSPPILTSNDCEGAGELFKVSTLDL 192 (495)
T ss_pred CCHHHHHCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCCCCEEECCCEEECCCCCCCCCCCEEEEHHH
T ss_conf 87677632763777898877899-----------9999999999987604786786886311368888754332200324
Q ss_pred CCCHHHHHHH---HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHH----CCCEEECC
Q ss_conf 6823888999---999997317982079971665404679998616678559997357767--60332----13113447
Q gi|254780465|r 112 KDIAMQFIAE---LMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI--SVVQQ----KQMTTSEA 182 (469)
Q Consensus 112 KD~a~q~l~~---~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v--S~~Q~----~qmtt~~~ 182 (469)
.-+--.- +. --+|| + +-+=|+-|+==-+=+.|.|++ +|+-|=|-=|- |.-.| ==|.-
T Consensus 193 ~~lp~~~-g~~df~~~fF----g-k~ayLTVSGQL~~E~~A~AL~-----kvyTfGPTFRAEkS~T~RHLsEFWMiE--- 258 (495)
T TIGR00457 193 EKLPRND-GKIDFSKDFF----G-KEAYLTVSGQLYAEAYALALS-----KVYTFGPTFRAEKSNTSRHLSEFWMIE--- 258 (495)
T ss_pred HCCCCCC-CCCCCCCCCC----C-CEEEEEECCHHHHHHHHHHHC-----CCEECCCCEECCCCCCCCCHHHHHHHH---
T ss_conf 2153326-8887630248----8-601233022789999999747-----814458740042864870111221011---
Q ss_pred CCEEEEEECCCHHHHHHHHHHH----HCC-HHHH-------CC---CC--------------CCCCCCCCHHHCCCCHHH
Q ss_conf 8708997179658889999997----501-5431-------35---83--------------113455654440110558
Q gi|254780465|r 183 SNINVIAVQSSFDDCQKIVKNL----FSD-VFFC-------HS---VN--------------LSGINSINWARIMAQIVY 233 (469)
Q Consensus 183 ~Nv~~i~v~G~FDDcq~~Vk~~----f~D-~~~~-------~~---~~--------------l~s~NSIN~~Ril~Q~vy 233 (469)
.=+-=+.++.+-.=.+++||.+ +.+ +++- .. +. -.-+|| ||.||-=.
T Consensus 259 PE~AF~~l~d~~~~~E~~~k~~~k~VL~~~qellPkqfi~~~enn~~~~L~~~~~~~~~~~l~~~i~~-~F~~i~Y~--- 334 (495)
T TIGR00457 259 PEMAFANLNDLLQLIETLIKYIIKAVLENQQELLPKQFICSQENNLLKFLEKNFDKDLIKKLENIINN-KFARITYT--- 334 (495)
T ss_pred HHEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHCCHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHC-CCCEECHH---
T ss_conf 20000013333899999999999998305245042010377713799986641275677522566622-67600478---
Q ss_pred HHHHHHHHCCC--CCCEEEEEECCCHHHHHH----HHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCC-CCCCCCCC
Q ss_conf 99999874477--887389963465788788----667775089877058723676335677532220102-34556564
Q gi|254780465|r 234 YFVSSIALGSP--NRNISFSVPTGNFGDIFA----GYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPE-IVMETTSP 306 (469)
Q Consensus 234 Yf~a~~~~~~~--~~~i~f~VPtGNfGni~A----g~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~-~~~~T~Sp 306 (469)
-|---|... .+.-+|=+|-=+||.=++ =|+|=..+-| +=|+-||= ++-|+.-=|+.. +=-+|..
T Consensus 335 --~Ai~iL~~~~~~~~~~Fe~~d~~wG~DL~~eHER~LaE~~Fk~--qPvfV~~Y----Pk~~KaFYMk~NS~D~~tV~- 405 (495)
T TIGR00457 335 --DAIEILKESDNKEKKNFEYEDFEWGIDLQTEHERFLAEEYFKP--QPVFVTDY----PKDIKAFYMKLNSDDGKTVA- 405 (495)
T ss_pred --HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC--CCEEEECC----CCCCCCHHCCCCCCCCCEEE-
T ss_conf --9999987421114643588861348886336899876315898--88899738----85558010536678887478-
Q ss_pred CCCCCCHHHHHHHHHHHHCCC--HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEEC
Q ss_conf 200134013788999870970--899999987520265105520221100012134213889999999999986395983
Q gi|254780465|r 307 AMDIQIPSNFERLLFEISGRN--SLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVD 384 (469)
Q Consensus 307 sMDI~v~SNfERllf~l~~~d--~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiD 384 (469)
||||.+|.- +=+..|+. -+....|++.+++ .-++.+-.+.+-.+. .+||+ +
T Consensus 406 a~DlL~P~G----iGEIiGGS~Re~dld~L~~r~k~--------------------~g~d~~G~l~WY~Dl-RKyGs--~ 458 (495)
T TIGR00457 406 AVDLLAPKG----IGEIIGGSEREDDLDKLEERMKE--------------------MGLDTDGALNWYLDL-RKYGS--V 458 (495)
T ss_pred EEEEECCCC----EEEEECCCCCHHHHHHHHHHHHH--------------------CCCCCCCCCHHHHHH-CCEEC--C
T ss_conf 999837896----26651675432268999999996--------------------486887750432641-51205--6
Q ss_pred CCHHHHHH
Q ss_conf 83399999
Q gi|254780465|r 385 PHTAVGIH 392 (469)
Q Consensus 385 PHTAvG~~ 392 (469)
||+.=|+.
T Consensus 459 PH~GFGLG 466 (495)
T TIGR00457 459 PHSGFGLG 466 (495)
T ss_pred CCCCCCHH
T ss_conf 64664324
No 273
>PRK07671 cystathionine beta-lyase; Provisional
Probab=42.48 E-value=25 Score=15.68 Aligned_cols=81 Identities=16% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC--C
Q ss_conf 38889999999973179820799716654046799986166785599973577676033213113447870899717--9
Q gi|254780465|r 115 AMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ--S 192 (469)
Q Consensus 115 a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~--G 192 (469)
||.-+..++. .+ +.+.++++.-..-|.| -.-+..+..+-+|++- ++.......+.+. ..+|...|=+| +
T Consensus 74 GmaAi~a~l~-~~-~~Gd~iv~~~~~YggT-~~l~~~~l~~~Gi~v~-fvd~~d~~~~~~a-----i~~~Tklv~~Esps 144 (377)
T PRK07671 74 GMAAITAVMM-LF-SSGDHVILTDDVYGGT-YRVMTKVLNRFGIEHT-FVDTTNLEEVEEA-----IRPNTKAIYVETPT 144 (377)
T ss_pred HHHHHHHHHH-HH-CCCCEEEECCCCCCCH-HHHHHHHHHHCCCEEE-EECCCCHHHHHHH-----CCCCCEEEEEECCC
T ss_conf 8899999999-86-8999899828982778-9999988863697699-9438886889964-----78884499997899
Q ss_pred C----HHHHHHHHHHH
Q ss_conf 6----58889999997
Q gi|254780465|r 193 S----FDDCQKIVKNL 204 (469)
Q Consensus 193 ~----FDDcq~~Vk~~ 204 (469)
| .-|.+.+++-+
T Consensus 145 NP~l~v~Di~~ia~iA 160 (377)
T PRK07671 145 NPLLKITDIKKISTLA 160 (377)
T ss_pred CCCCEECCHHHHHHHH
T ss_conf 9887501679999999
No 274
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=42.23 E-value=25 Score=15.66 Aligned_cols=53 Identities=6% Similarity=-0.001 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 89999998752026510552022110001213421388999999999998639
Q gi|254780465|r 328 SLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSN 380 (469)
Q Consensus 328 ~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~g 380 (469)
++.+-+.|++.+++-.=++.--.++.+-+.+...-++.+++.+.|.+.-+--+
T Consensus 334 ~~~l~~~m~~dKK~~gG~l~~vLl~~IG~~~~~~dv~~~~i~~al~~l~e~~~ 386 (390)
T PRK06203 334 PDSLLRGLEEFREHLGGELTVTLLEGIGRGIEVHEIDLSLYRQAIDRLQEWAG 386 (390)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHHHHC
T ss_conf 99999999987631399899995601697688489999999999999999828
No 275
>PRK06139 short chain dehydrogenase; Provisional
Probab=42.08 E-value=26 Score=15.64 Aligned_cols=73 Identities=19% Similarity=0.282 Sum_probs=44.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.+.|-+|+| --|.|.+..|.. .+-++++.--.. +..++++. ... .+..++.+.+| .+.|+++.+++++..
T Consensus 5 ~gKvvlITGASs-GIG~aiA~~~A~-~Ga~Vvl~~R~~~~L~~~a~e-~~~-~G~~~~~v~~DVsd~~~v~~~~~~~~~ 79 (324)
T PRK06139 5 HGAVVVITGASS-GIGRATAEAFAR-RGARLVLAARDEEALFEVAEE-CRA-LGAEVLVVPTDVTHADQVQALATQAAS 79 (324)
T ss_pred CCCEEEEECHHH-HHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHH-HHH-CCCCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 997799938254-999999999998-799899998999999999999-995-499489997667885789999999999
No 276
>PRK08251 short chain dehydrogenase; Provisional
Probab=41.79 E-value=26 Score=15.61 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=43.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHHHHCCCEE-ECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 982079971665404679998616678559997357-7676033213113-447870899717-9658889999997501
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPE-GRISVVQQKQMTT-SEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~-g~vS~~Q~~qmtt-~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.|.+.|.+|+| .-|.|.+..|... +-++++.--. .+..++.+ ++.. ..+.+++.+.+| .+.++|+++++++..+
T Consensus 2 ~K~vlITGAss-GIG~alA~~la~~-G~~v~l~~r~~~~l~~~~~-el~~~~~~~~v~~~~~Dvsd~~~v~~~~~~~~~~ 78 (248)
T PRK08251 2 RQKILITGASS-GLGAGMAREFAAK-GRDLALCARRTDRLEELKA-ELLARYPGIKVAVAALDVNDHDQVFEVFAEFSDE 78 (248)
T ss_pred CCEEEEECCCC-HHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 99899947863-9999999999987-9989999898889999999-9987379973999978678689999999999998
No 277
>PRK05993 short chain dehydrogenase; Provisional
Probab=41.66 E-value=26 Score=15.60 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=41.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+|.+.|-+|+|| -|-|.+..|... +-+|+..- .. ..++++ ...++++++.+| .+.++++.+|+++..
T Consensus 4 ~K~vlITGassG-IG~alA~~la~~-G~~V~~~~-R~-~~~l~~-----l~~~~~~~~~~Dv~d~~~v~~~v~~~~~ 71 (277)
T PRK05993 4 KRSILITGCSSG-IGAYCAHALQKR-GWRVFATC-RK-PEDIAA-----LEAEGLEAFYLDYAEPESIAALVAQVLE 71 (277)
T ss_pred CCEEEEECCCCH-HHHHHHHHHHHC-CCEEEEEE-CC-HHHHHH-----HHHCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 868999256869-999999999987-99999997-99-999999-----9848981999726677999999999999
No 278
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=41.44 E-value=26 Score=15.57 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=5.8
Q ss_pred CHHHHHHHHHHH
Q ss_conf 658889999997
Q gi|254780465|r 193 SFDDCQKIVKNL 204 (469)
Q Consensus 193 ~FDDcq~~Vk~~ 204 (469)
+.+|..+..+++
T Consensus 157 ~~~~~~~aa~~L 168 (254)
T cd01173 157 DLEDAKAAARAL 168 (254)
T ss_pred CHHHHHHHHHHH
T ss_conf 999999999999
No 279
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=41.31 E-value=26 Score=15.56 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=9.9
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 78998999999999863
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYH 81 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~ 81 (469)
+.|+++.+.++|+.|-.
T Consensus 29 ~~id~~~~~~~i~~aie 45 (391)
T COG1453 29 GSIDEENANETIDYAIE 45 (391)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 87449999999999997
No 280
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=40.64 E-value=17 Score=16.79 Aligned_cols=88 Identities=19% Similarity=0.331 Sum_probs=43.1
Q ss_pred CCCC-EEEEECCCCCHHHHHHHCCCHHCC-----CCCC-CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCC--C
Q ss_conf 9877-058723676335677532220102-----3455-65642001340137889998709708999999875202--6
Q gi|254780465|r 271 LPIE-KLIIATNENDTLVRMFDMGMYRPE-----IVME-TTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLEN--K 341 (469)
Q Consensus 271 LPI~-kli~AtN~NdiL~rf~~tG~y~~~-----~~~~-T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~--~ 341 (469)
.|++ |+|+|||+| |.+++..|.++.+ .|.+ |+-| . -.-+--.+.|. ..+++.+.. .
T Consensus 378 ~~vDVRIIAATN~n--L~~~i~~G~FReDLYYRLNV~~i~iPP-L-ReR~eDI~~L~-----------~~Fl~k~s~~~~ 442 (560)
T COG3829 378 IPVDVRIIAATNRN--LEKMIAEGTFREDLYYRLNVIPITIPP-L-RERKEDIPLLA-----------EYFLDKFSRRYG 442 (560)
T ss_pred EEEEEEEEECCCCC--HHHHHHCCCCHHHHEEEECEEEECCCC-C-CCCCCHHHHHH-----------HHHHHHHHHHCC
T ss_conf 35678999425758--999986396165530030401114777-2-33820189999-----------999999998728
Q ss_pred CCC-CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 510-5520221100012134213889999999999
Q gi|254780465|r 342 KYF-RIDSEHLQKMSLSFSAKRASMEDVNSVIKSV 375 (469)
Q Consensus 342 g~~-~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~ 375 (469)
..+ .++++.+..+...=|.+-| -|..+.|.+.
T Consensus 443 ~~v~~ls~~a~~~L~~y~WPGNV--RELeNviER~ 475 (560)
T COG3829 443 RNVKGLSPDALALLLRYDWPGNV--RELENVIERA 475 (560)
T ss_pred CCCCCCCHHHHHHHHHCCCCCHH--HHHHHHHHHH
T ss_conf 87666899999999868999609--9999999999
No 281
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.17 E-value=27 Score=15.44 Aligned_cols=135 Identities=17% Similarity=0.131 Sum_probs=66.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CC-CHHHHC-CCEEECCCCEEEEEECCCHHHHHHH---HH
Q ss_conf 79820799716654046799986166785599973577--67-603321-3113447870899717965888999---99
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RI-SVVQQK-QMTTSEASNINVIAVQSSFDDCQKI---VK 202 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~v-S~~Q~~-qmtt~~~~Nv~~i~v~G~FDDcq~~---Vk 202 (469)
...++.|++| |..|++.+.+...+.-.+=++||=.. +. ...... +..+..+ +. .+...|+++||... |=
T Consensus 2 ~r~Kv~IIGa--G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~h~~~~~~-~~-~v~~~~d~~~~~~aDvVVi 77 (312)
T cd05293 2 PRNKVTVVGV--GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLK-NP-KIEADKDYSVTANSKVVIV 77 (312)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC-CC-EEEECCCHHHHCCCCEEEE
T ss_conf 9886999897--888999999999669988799993889833268888660401279-85-5993799999689999998
Q ss_pred HHH-CCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 975-01543135831134556544401105589999987447788738996346578878866777508987705872
Q gi|254780465|r 203 NLF-SDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIA 279 (469)
Q Consensus 203 ~~f-~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~A 279 (469)
.+= .-++-..+.-|-..|.--.-.+.++ +.+.... .+++=.+|==|+.+..+.|..|+|=+|++-.
T Consensus 78 tAG~~~k~g~~R~dLl~~N~~I~~~i~~~----------i~~~~p~-~ivivvsNPvDv~t~~~~k~sg~p~~rviG~ 144 (312)
T cd05293 78 TAGARQNEGESRLDLVQRNVDIFKGIIPK----------LVKYSPN-AILLVVSNPVDIMTYVAWKLSGLPKHRVIGS 144 (312)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHH----------HHHCCCC-CEEEECCCCHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 89999998988899999889999999999----------8841998-4699668918999999999629982267872
No 282
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=40.09 E-value=27 Score=15.44 Aligned_cols=111 Identities=14% Similarity=0.065 Sum_probs=45.5
Q ss_pred HHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCE
Q ss_conf 63047667860477248825466213898120682388899999999731798207997166540467999861667855
Q gi|254780465|r 80 YHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRIN 159 (469)
Q Consensus 80 y~~f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~ 159 (469)
|++..+|.+..|. +.+ .+|-.|-.+.-=-=||.-+..++ .+-+.+.++.+--..-|.| -...+.+-.+-+|+
T Consensus 44 Y~R~~nPt~~~lE---~~l--a~LEg~~~a~~~sSGmAAi~a~l--a~~~~Gd~iv~~~~~Yg~t-~~~~~~~l~~~GI~ 115 (379)
T PRK06176 44 YSRSGNPTRFALE---ELI--ADLEGGVKGFAFASGLAGIHAVF--SLFQSGDHVLLGDDVYGGT-FRLFDKVLVKNGLS 115 (379)
T ss_pred CCCCCCHHHHHHH---HHH--HHHHCCCCEEECCCHHHHHHHHH--HHHCCCCEEEEECCCCCCH-HHHHHHHHHCCCEE
T ss_conf 4089885499999---999--99829865331255799999999--9868999899818988877-67459876447849
Q ss_pred EEEECCCCCCCHHHHCCCEEECCCCEEEEEEC--CC----HHHHHHHHHHH
Q ss_conf 99973577676033213113447870899717--96----58889999997
Q gi|254780465|r 160 MYILFPEGRISVVQQKQMTTSEASNINVIAVQ--SS----FDDCQKIVKNL 204 (469)
Q Consensus 160 v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~--G~----FDDcq~~Vk~~ 204 (469)
+-.. ....+.++++. ..+|...+=+| +| .-|...+++-+
T Consensus 116 ~~~v-d~~d~~~~~~~-----i~~~Tklv~~EspsNP~l~v~Di~~ia~ia 160 (379)
T PRK06176 116 CTII-DTSDLSQIKKA-----IKPNTKALYLETPSNPLLKITDLAQCASVA 160 (379)
T ss_pred EEEE-CCCCHHHHHHH-----CCCCCEEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 9986-78676889965-----687745999977999876015858999999
No 283
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=39.83 E-value=28 Score=15.41 Aligned_cols=169 Identities=14% Similarity=0.141 Sum_probs=79.2
Q ss_pred CCCCCEEEEECC-CCCHHHHH---HHHHCCCCCCEEEEECCCCCCCHHHHCCCEEEC---CCCEEEEEECCCHHHHHHHH
Q ss_conf 179820799716-65404679---998616678559997357767603321311344---78708997179658889999
Q gi|254780465|r 129 ERDHYITIVGAT-SGDTGAAA---IKAFAGKKRINMYILFPEGRISVVQQKQMTTSE---ASNINVIAVQSSFDDCQKIV 201 (469)
Q Consensus 129 ~~~~~~~il~AT-SGDTGsAa---~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~---~~Nv~~i~v~G~FDDcq~~V 201 (469)
..++.++|.+.| ||.|.+-. ++.+-..+.-..++|||-.-...-|..-+-... +..|....-+|+-..-.+
T Consensus 83 ~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r-- 160 (851)
T COG1205 83 REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEER-- 160 (851)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHH--
T ss_conf 779988997899885458989999999830866508998043776766999999999847875135443488967888--
Q ss_pred HHHHCCHHHHCCCCCCCCCCC-CHHHCCCCHHHHHHHHHHHCCCCCCEE---EEEECCCHHHHHHHHHHHHC------CC
Q ss_conf 997501543135831134556-544401105589999987447788738---99634657887886677750------89
Q gi|254780465|r 202 KNLFSDVFFCHSVNLSGINSI-NWARIMAQIVYYFVSSIALGSPNRNIS---FSVPTGNFGDIFAGYMAKMM------GL 271 (469)
Q Consensus 202 k~~f~D~~~~~~~~l~s~NSI-N~~Ril~Q~vyYf~a~~~~~~~~~~i~---f~VPtGNfGni~Ag~~Ak~M------GL 271 (469)
+.+...+ ..+-+ -|-- =+-=+|++.--+.|.+.++. =|+ +-+=-|-||.-.|..+=+.+ |=
T Consensus 161 ~~~~~~p---p~Ill--TNpdMLh~~llr~~~~~~~~~~~Lk----~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~ 231 (851)
T COG1205 161 RAIIRNP---PDILL--TNPDMLHYLLLRNHDAWLWLLRNLK----YLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGS 231 (851)
T ss_pred HHHHHCC---CCEEE--ECHHHHHHHHHCCCCCHHHHHHCCC----EEEEECCEECCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9987389---97898--3889998986368822788873275----8998444121560378899999999999724589
Q ss_pred CCCEEEE--ECCCCCH--HHHHHHCCCHHCCCCCCCCCCCCCCC
Q ss_conf 8770587--2367633--56775322201023455656420013
Q gi|254780465|r 272 PIEKLII--ATNENDT--LVRMFDMGMYRPEIVMETTSPAMDIQ 311 (469)
Q Consensus 272 PI~kli~--AtN~Ndi--L~rf~~tG~y~~~~~~~T~SpsMDI~ 311 (469)
+. ++|| ||=.|.- ..+++. .--...+...-+|++++-
T Consensus 232 ~~-q~i~~SAT~~np~e~~~~l~~--~~f~~~v~~~g~~~~~~~ 272 (851)
T COG1205 232 PL-QIICTSATLANPGEFAEELFG--RDFEVPVDEDGSPRGLRY 272 (851)
T ss_pred CC-EEEEEECCCCCHHHHHHHHCC--CCCEEECCCCCCCCCCEE
T ss_conf 96-289983124682889998628--721463147888878748
No 284
>PRK06500 short chain dehydrogenase; Provisional
Probab=39.61 E-value=28 Score=15.39 Aligned_cols=71 Identities=11% Similarity=0.164 Sum_probs=44.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|. .|++..|+--|.|.+..|.. .+-+|++.+=... .+++. ....+.+++.+..| .+-++++.+++++-.
T Consensus 5 ~gK~-~lITGas~GIG~aiA~~la~-~Ga~V~i~~r~~~--~l~~~--~~~l~~~~~~~~~Dv~~~~~~~~~~~~~~~ 76 (249)
T PRK06500 5 QGKT-ALITGGTSGIGLETARQFAA-EGARVAITGRDAA--TLEAA--RAELGEDALVIRNDAGSVAAQRALAQALAE 76 (249)
T ss_pred CCCE-EEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHH--HHHHCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9988-99937687899999999998-7999999969989--99999--998589759999517999999999999999
No 285
>PRK06484 short chain dehydrogenase; Validated
Probab=39.50 E-value=28 Score=15.37 Aligned_cols=232 Identities=15% Similarity=0.152 Sum_probs=98.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCC--CCCCCHHHH---------HHHHHHHHHHCCCCC
Q ss_conf 789989999999998630476678604772488254662138981--206823888---------999999997317982
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTL--SFKDIAMQF---------IAELMDHILEERDHY 133 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~~~~vlELfHGPT~--aFKD~a~q~---------l~~~~~~~l~~~~~~ 133 (469)
|--++++++++++++...|..-|++ .. +.+ + .-+.+|+. ...|+--.+ +.+.+-..+++++..
T Consensus 59 Dvsd~~~v~~~v~~~~~~~G~iDiL--VN-NAG--i-~~~~~~~~~~~~e~~~~~~~vNl~g~f~~~~~~~p~m~~~gg~ 132 (530)
T PRK06484 59 DVSDEAQVEHAMDGLLQQFGRIDVL--VN-NAG--I-GPTMRATLDTPLEDFDRAIAVNLEGPYLVAREALRLMGRHGAA 132 (530)
T ss_pred ECCCHHHHHHHHHHHHHHCCCCCEE--EE-CCC--C-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
T ss_conf 4899999999999999972999899--98-998--9-9889861009999999999987299999999999987762573
Q ss_pred EEEEECCCCCHHH----------HHHHHH-------CCCCCCEEEEECCCCCCCHHHHCCCEE------ECCCCEEEEEE
Q ss_conf 0799716654046----------799986-------166785599973577676033213113------44787089971
Q gi|254780465|r 134 ITIVGATSGDTGA----------AAIKAF-------AGKKRINMYILFPEGRISVVQQKQMTT------SEASNINVIAV 190 (469)
Q Consensus 134 ~~il~ATSGDTGs----------Aa~~a~-------~~~~~i~v~vlyP~g~vS~~Q~~qmtt------~~~~Nv~~i~v 190 (469)
++-+.-.+|-.|. ||+.++ .+..+|+|=..-|--=-++.-+.+... ...+. .++.-
T Consensus 133 IInisS~~g~~~~~~~~~Y~asKaal~~lTkslA~Ela~~gIRVNaVaPG~I~T~m~~~~~~~~~~~~~~~~~~-iPlgR 211 (530)
T PRK06484 133 IVNVASLAGLVANPKRAAYSASKAGVISLTRSLACELAPKGIRVNAVAPGYVRTEMVAELERAGKLDRSAVRGR-IPMGR 211 (530)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHCCHHHHHHHHCC-CCCCC
T ss_conf 89998331045799968899999999999999999863409499999637888711433310564479999717-99888
Q ss_pred CCCHHHHHHHHHHHHCCHH-HHCCC------CCCCCCCC---CHHHCCCCHHHHHHHHHHHCCC--CCCEEEEEECCC--
Q ss_conf 7965888999999750154-31358------31134556---5444011055899999874477--887389963465--
Q gi|254780465|r 191 QSSFDDCQKIVKNLFSDVF-FCHSV------NLSGINSI---NWARIMAQIVYYFVSSIALGSP--NRNISFSVPTGN-- 256 (469)
Q Consensus 191 ~G~FDDcq~~Vk~~f~D~~-~~~~~------~l~s~NSI---N~~Ril~Q~vyYf~a~~~~~~~--~~~i~f~VPtGN-- 256 (469)
-|.-+|.-..|-=+..|+. +-... ..++.++. +|.+..-|. ..+-+..+ ..+ +++=||.
T Consensus 212 ~g~PeeiA~~v~FLaSd~asyITG~~i~VDGG~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~kGK--valVTGaa~ 284 (530)
T PRK06484 212 LARPDEIAEAVHFLASAQASYITGSTLVVDGGWDAYNQSGKAHTAQMPHPG-----AEFMRPVPVRAGR--VVCVTGGAS 284 (530)
T ss_pred CCCHHHHHHHHHHHCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCH-----HHCCCCCCCCCCC--EEEECCCCC
T ss_conf 789999999999976833258889879983893153788876644467855-----6515777677898--999928767
Q ss_pred -HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -7887886677750898770587236763356775322201023455656420013401378899
Q gi|254780465|r 257 -FGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLL 320 (469)
Q Consensus 257 -fGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERll 320 (469)
.|-..|-.+|+. |- +++++--..+-+.+..+. .. -+.++-..|+....-.++++
T Consensus 285 GIG~aiA~~la~~-GA---~Vvi~d~~~~~~~~~~~~--~g----~~~~~~~~Dv~~~~~v~~~v 339 (530)
T PRK06484 285 GIGAAIADRFAAL-GD---RVAIIDSDGEEAVKLREI--LG----GEHLSWQVDITDEASVESAF 339 (530)
T ss_pred HHHHHHHHHHHHC-CC---EEEEEECCHHHHHHHHHH--CC----CCCEEEEECCCCHHHHHHHH
T ss_conf 8999999999988-79---899995888999999997--39----97369995389999999999
No 286
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=39.17 E-value=28 Score=15.34 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=19.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHH
Q ss_conf 17982079971665404679998616678559997357767603
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVV 172 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~ 172 (469)
+-+.+.+|++..+|-+...++.-.....--+|.|| +|+++.+
T Consensus 62 k~Kgk~VViV~~~g~~a~~fa~~Lvk~Gf~rVcvL--~GGi~~l 103 (105)
T cd01525 62 NYKGKIIVIVSHSHKHAALFAAFLVKCGVPRVCIL--DGGINAL 103 (105)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEE--CCHHHHH
T ss_conf 75898299988998679999999998499869993--3827531
No 287
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=39.10 E-value=14 Score=17.51 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHHHHHHH
Q ss_conf 78998999999999863
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYH 81 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~ 81 (469)
+|-...+|++.+.+-|+
T Consensus 55 Pd~~~~~Lr~aiA~~~g 71 (358)
T PRK07392 55 PDPDYRELREALAQHHQ 71 (358)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 99568999999999859
No 288
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF; InterPro: IPR012729 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the divergent clade of putative ThiF proteins as found in Campylobacter..
Probab=38.86 E-value=28 Score=15.39 Aligned_cols=111 Identities=21% Similarity=0.302 Sum_probs=69.6
Q ss_pred ECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
Q ss_conf 34657887886677750898770587236763356775322201023455656420013401378899987097089999
Q gi|254780465|r 253 PTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVK 332 (469)
Q Consensus 253 PtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~ 332 (469)
=-|-+|---|==+||- | |++|+.- =-|+--|||+.|.-|.++.=-..++-
T Consensus 28 GlGGLGS~~AinLAR~-G--igkLiLv---------------------------DfDvvepsNLnRQqY~~s~~G~~Kte 77 (200)
T TIGR02354 28 GLGGLGSNVAINLARA-G--IGKLILV---------------------------DFDVVEPSNLNRQQYKVSDVGKKKTE 77 (200)
T ss_pred ECCCCHHHHHHHHHHH-C--CCCEEEE---------------------------EECEECCCCCCHHHHHHHHCCCHHHH
T ss_conf 0161168999999873-0--2202566---------------------------40432366561325787624862179
Q ss_pred HHHHHHCCCCCCC--------CCCHHHHHHHC--CCCCCCCCHHHHHHHHHHHHHHC---CCEECCCHHHHHHHHHH
Q ss_conf 9987520265105--------52022110001--21342138899999999999863---95983833999999999
Q gi|254780465|r 333 EAFYSLENKKYFR--------IDSEHLQKMSL--SFSAKRASMEDVNSVIKSVLEKS---NYLVDPHTAVGIHAALA 396 (469)
Q Consensus 333 ~~m~~l~~~g~~~--------i~~~~l~~l~~--~f~s~svsDeet~~~Ik~~y~~~---gyiiDPHTAvG~~aa~~ 396 (469)
.+-+.+++-..|. ++++.++++=+ ++.....|..|++..|-..+.++ .|+++ |=|+++...
T Consensus 78 Alke~i~einPy~~ie~~d~ki~E~N~~~~fkdaDiv~EAFDna~aKam~~n~vl~~ykdk~li~---ASGlAGy~D 151 (200)
T TIGR02354 78 ALKENISEINPYVEIEIIDEKIDEENLDKLFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKKLIA---ASGLAGYDD 151 (200)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE---ECCCCCCCC
T ss_conf 99987865088421231102127667987840674788716998899999999997678645876---026645242
No 289
>PRK12828 short chain dehydrogenase; Provisional
Probab=38.45 E-value=29 Score=15.26 Aligned_cols=133 Identities=12% Similarity=0.197 Sum_probs=67.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 798207997166540467999861667855999735776-76033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-ISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++| ..+++..|+--|.|.+..|. ..+-+|++...... ..+..+ ...+.+.+.+.+| .+.++++++|+++...
T Consensus 6 ~gK-valITGas~GIG~aia~~la-~~Ga~V~i~~~~~~~~~~~~~----~~~~~~~~~~~~Dvt~~~~~~~~v~~~~~~ 79 (239)
T PRK12828 6 QGK-VVAITGGFGGLGRATAAWLA-ARGARVALIGRGAAPLSQTLP----GVPADALRIGGIDLVDPQAARRAVDEVNRQ 79 (239)
T ss_pred CCC-EEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH----HHHCCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 989-89994725489999999999-879989999798778999998----751788569996079999999999999998
Q ss_pred HHHHCCCC-------------CCCCCCCCHHHCCCC---HHHHHH-HHH-HHC--CCCCCEEEEEECCCHHHH-HHHHHH
Q ss_conf 54313583-------------113455654440110---558999-998-744--778873899634657887-886677
Q gi|254780465|r 208 VFFCHSVN-------------LSGINSINWARIMAQ---IVYYFV-SSI-ALG--SPNRNISFSVPTGNFGDI-FAGYMA 266 (469)
Q Consensus 208 ~~~~~~~~-------------l~s~NSIN~~Ril~Q---~vyYf~-a~~-~~~--~~~~~i~f~VPtGNfGni-~Ag~~A 266 (469)
| .++. +.-...=-|-|++-- -+|+.. +.+ .+. ..++-|+++--+|..|.- .+.|-|
T Consensus 80 --~-G~iDilVnNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IInisS~~~~~~~~~~~~Y~a 156 (239)
T PRK12828 80 --F-GRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALKAGPGMGAYAA 156 (239)
T ss_pred --C-CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCCCHHHHH
T ss_conf --3-9997999897789999904499999999999996999999999999998769986999977786777999689999
Q ss_pred HHCCC
Q ss_conf 75089
Q gi|254780465|r 267 KMMGL 271 (469)
Q Consensus 267 k~MGL 271 (469)
-|.|+
T Consensus 157 sKaal 161 (239)
T PRK12828 157 AKAGV 161 (239)
T ss_pred HHHHH
T ss_conf 99999
No 290
>TIGR01420 pilT_fam twitching motility protein; InterPro: IPR006321 These represent the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction . Members of this family may be found in some species that do not have type IV pili but have related structures for DNA uptake and natural transformation. ; GO: 0005524 ATP binding, 0006810 transport.
Probab=38.41 E-value=29 Score=15.26 Aligned_cols=136 Identities=19% Similarity=0.328 Sum_probs=69.6
Q ss_pred CCCCC----CCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 15678----78632861078889889987709998999999998751578998999--9999998630476678604772
Q gi|254780465|r 21 SGLAT----DGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFRLFIGQEIKSSKL--RDIVNRSYHCFRNAAVTPLIQL 94 (469)
Q Consensus 21 ~Gla~----DGGL~vP~~~p~~~~~~~~~~~~~sy~e~a~~il~~f~~~~i~~~~l--~~ii~~ay~~f~~~~~~pl~~l 94 (469)
.|++| ||.|-.|...|.|+++.. .+++++||++-- +-..+++ ..=++=||+- ++ +-+.
T Consensus 21 aG~PP~~R~~G~~~~~~~~~plt~~~~--------~~l~~~~l~~th--~~~~~~f~~~~E~Dfs~~~---~~---~~Rf 84 (350)
T TIGR01420 21 AGLPPAIRIDGDLRTRIGFEPLTPEDT--------QKLLREILSSTH--EKQREEFEENGELDFSFSL---PG---LARF 84 (350)
T ss_pred CCCCEEEEECCCEECCCCCCCCCHHHH--------HHHHHHHCCCCC--HHHHHHHHHCCCCCEEEEE---CC---CCEE
T ss_conf 377403754783103446789898999--------999998638456--5777505650664446630---67---3221
Q ss_pred CCCCE--------EEEECCCCCCCCCCCHHHHHH-HHHHHHHHCCCCCEEEEECC-CCCH-HHHHHHHHCCCC-CCEEE-
Q ss_conf 48825--------466213898120682388899-99999973179820799716-6540-467999861667-85599-
Q gi|254780465|r 95 NANEF--------LLELFHGPTLSFKDIAMQFIA-ELMDHILEERDHYITIVGAT-SGDT-GAAAIKAFAGKK-RINMY- 161 (469)
Q Consensus 95 ~~~~~--------vlELfHGPT~aFKD~a~q~l~-~~~~~~l~~~~~~~~il~AT-SGDT-GsAa~~a~~~~~-~i~v~- 161 (469)
--|.| ||-+---+=.-|+-+|+ | ..|..++.+...=+.|-|+| ||-| --||+=-+-|+. .-+++
T Consensus 85 RvN~f~QRg~~a~vlR~ip~~Ip~fe~LGL---P~~v~~~~a~~~~GLiLVTGPTGSGKSTTlAsmIDyIN~~~~~HIiT 161 (350)
T TIGR01420 85 RVNAFKQRGGVALVLRLIPSKIPTFEELGL---PRPVLRELAERPRGLILVTGPTGSGKSTTLASMIDYINKNKAGHIIT 161 (350)
T ss_pred EEHHHHHCCHHHHHHHHCCCCCCCHHHCCC---CHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 220323500064232311534621666379---87899999836699389876889867899999997874038888256
Q ss_pred ------EECCCCCCCHHHHCC
Q ss_conf ------973577676033213
Q gi|254780465|r 162 ------ILFPEGRISVVQQKQ 176 (469)
Q Consensus 162 ------vlyP~g~vS~~Q~~q 176 (469)
.+|++. =|=|++++
T Consensus 162 IEDPIEyvh~~~-~sli~QRE 181 (350)
T TIGR01420 162 IEDPIEYVHKNK-RSLINQRE 181 (350)
T ss_pred EECCEEEEECCC-EEEEECCC
T ss_conf 317731410477-02454362
No 291
>PRK05872 short chain dehydrogenase; Provisional
Probab=38.35 E-value=29 Score=15.25 Aligned_cols=71 Identities=7% Similarity=0.154 Sum_probs=44.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|...|-+| |+--|.|.+..|.. .+-++++.-= ++-.-.+.....+.++..+.+| .+.++|+.+++++..
T Consensus 8 ~gKvalITGa-ssGIG~aiA~~la~-~Ga~Vvl~dr----~~~~l~~~~~~lg~~~~~~~~DVtd~~~v~~~v~~i~~ 79 (296)
T PRK05872 8 DGKVVFVTGA-ARGVGAELARRLHA-RGAKVALVDL----EEAELAALAAELGDRVLTVVADVTDLAAMQAAAEEAVE 79 (296)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHH-CCCEEEEEEC----CHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9987999271-05899999999998-7998999989----99999999998388738999827999999999999999
No 292
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=38.32 E-value=29 Score=15.25 Aligned_cols=44 Identities=23% Similarity=0.323 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 8999999997317982079971665404679998616678559997
Q gi|254780465|r 118 FIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 118 ~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
++..+-++....+++++.|++| |-+|.|++.++....--++.|+
T Consensus 109 ~~~~l~~~~~~~~~k~vlIlGa--GGaarai~~al~~~g~~~i~i~ 152 (275)
T PRK00258 109 FVRDLERLGLDLKGKRILLLGA--GGAARAVILPLLELGVAEITIV 152 (275)
T ss_pred HHHHHHHHCCCCCCCEEEEECC--CCHHHHHHHHHHHCCCCEEEEE
T ss_conf 9999998487856875999888--7107999999997699989999
No 293
>PRK06482 short chain dehydrogenase; Provisional
Probab=38.04 E-value=29 Score=15.22 Aligned_cols=70 Identities=9% Similarity=0.158 Sum_probs=43.3
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 20799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
+..+++..|+--|-|.+..+... +-+|+.-.- +...+++ +....+++++++.+| .+.++|+..|++++..
T Consensus 3 Kv~lITGaSsGiG~ala~~l~~~-G~~Vi~t~R--~~~~l~~--l~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~ 73 (276)
T PRK06482 3 KTWFITGASSGFGRGLTERLLAR-GDRVAATVR--RPDALDD--LKARYGERLWVLQLDVTDTAAVRAVVDRAFAE 73 (276)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEEC--CHHHHHH--HHHHCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 78999158659999999999988-998999978--9899999--99866995799995379999999999999998
No 294
>KOG1383 consensus
Probab=37.80 E-value=30 Score=15.20 Aligned_cols=138 Identities=13% Similarity=0.091 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHHC--CCCCCCEEEECCCC---CEEEEECCCCCCCCCC----CHHHHHHHHHHHHHHCCC-CCEEE
Q ss_conf 99899999999986304--76678604772488---2546621389812068----238889999999973179-82079
Q gi|254780465|r 67 IKSSKLRDIVNRSYHCF--RNAAVTPLIQLNAN---EFLLELFHGPTLSFKD----IAMQFIAELMDHILEERD-HYITI 136 (469)
Q Consensus 67 i~~~~l~~ii~~ay~~f--~~~~~~pl~~l~~~---~~vlELfHGPT~aFKD----~a~q~l~~~~~~~l~~~~-~~~~i 136 (469)
..++++.+++.++|+.| -|+++.|.++--.+ .+++.|||||-.+|-- -....++....|+..+.. +.+..
T Consensus 91 ~~~~~~~~l~~~~~~k~N~l~~d~fp~~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~i~~ 170 (491)
T KOG1383 91 WGEPELDKLIMEAYNKFNPLHPDEFPVVRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDK 170 (491)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 48831346899987504756741143358999999999999846996456755446516888898999999974059887
Q ss_pred EECCCCCHHHHHHHHHCCCCCCEEEE--ECCCCCCCHHHHCCCEEECCCCEEEEEE------CCCHHHHHHHHHHHHC
Q ss_conf 97166540467999861667855999--7357767603321311344787089971------7965888999999750
Q gi|254780465|r 137 VGATSGDTGAAAIKAFAGKKRINMYI--LFPEGRISVVQQKQMTTSEASNINVIAV------QSSFDDCQKIVKNLFS 206 (469)
Q Consensus 137 l~ATSGDTGsAa~~a~~~~~~i~v~v--lyP~g~vS~~Q~~qmtt~~~~Nv~~i~v------~G~FDDcq~~Vk~~f~ 206 (469)
=.-.++-+.-||.+-|+..=.+.+-- +-|....-++ ..|.-...+|+..+.. .|.+||.+.+-+.+..
T Consensus 171 p~iv~~~~v~~a~eK~a~yf~v~l~~V~~~~~~~~~D~--~k~~~~i~eNti~lV~~~~~~p~G~~e~ve~l~~l~~e 246 (491)
T KOG1383 171 PNIVTPQNVHAAFEKAARYFEVELREVPLDEGDYRVDP--GKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLE 246 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHEEEEEEEEECCCCCEEECH--HHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 10021588999999987667999976503632257629--99998753463799997588876730159999999998
No 295
>PRK05693 short chain dehydrogenase; Provisional
Probab=37.74 E-value=30 Score=15.19 Aligned_cols=66 Identities=12% Similarity=0.225 Sum_probs=41.0
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 0799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 134 ITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 134 ~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
+.+++..|+--|-|.+..|.. .+.+|+..-= +...+.+ ..+.++..+.+| .+.++|+.+++++...
T Consensus 3 vvlITGassGIG~alA~~la~-~G~~V~~~~R--~~~~l~~-----l~~~~~~~~~~Dvtd~~~i~~~~~~~~~~ 69 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKA-AGYEVWATAR--KAEDVEA-----LAAAGFTAVQLDVNDGAALARLAEELEAE 69 (274)
T ss_pred EEEECCCCCHHHHHHHHHHHH-CCCEEEEEEC--CHHHHHH-----HHHCCCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 899948885899999999998-7999999979--9999999-----98489918998469989999999999997
No 296
>TIGR01182 eda 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related . They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=37.64 E-value=30 Score=15.18 Aligned_cols=54 Identities=19% Similarity=0.474 Sum_probs=37.5
Q ss_pred HHHHHHHHCC-CCCCEEEEECCCCCCCH--HHHCCCEEECCCCEEEEE----------ECCCHHHHHHHHHHHH
Q ss_conf 4679998616-67855999735776760--332131134478708997----------1796588899999975
Q gi|254780465|r 145 GAAAIKAFAG-KKRINMYILFPEGRISV--VQQKQMTTSEASNINVIA----------VQSSFDDCQKIVKNLF 205 (469)
Q Consensus 145 GsAa~~a~~~-~~~i~v~vlyP~g~vS~--~Q~~qmtt~~~~Nv~~i~----------v~G~FDDcq~~Vk~~f 205 (469)
|.+++.|++| .++|+ |-|-|+||. .|+ -. .-+||-+++ =.|++|+-++++|++.
T Consensus 136 G~~~lkAL~GPf~~v~---F~PTGGi~l~N~~~--YL--a~p~v~c~GGSWl~P~~~~~~g~wd~i~~l~r~a~ 202 (205)
T TIGR01182 136 GVKMLKALAGPFPQVR---FCPTGGINLDNARD--YL--ALPNVACVGGSWLVPKDLIAAGDWDEITELAREAL 202 (205)
T ss_pred HHHHHHHHCCCCCCCC---CCCCCCCCHHHHHH--HH--CCCCEEEEECCCCCCHHHHHCCCHHHHHHHHHHHH
T ss_conf 0899997316578984---51479998878999--97--18937998163146478875899679999999998
No 297
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=37.56 E-value=30 Score=15.17 Aligned_cols=121 Identities=22% Similarity=0.262 Sum_probs=64.5
Q ss_pred EEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC------CCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 079971665404679998616678559997357------76760332131134478708997179658889999997501
Q gi|254780465|r 134 ITIVGATSGDTGAAAIKAFAGKKRINMYILFPE------GRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSD 207 (469)
Q Consensus 134 ~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~------g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D 207 (469)
+.|++| |..|++.+......+-.+-++||=. |..-+++.. .+.. ..+.+-..|++.||. |
T Consensus 1 V~IIGa--G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~--~~~~--~~~~~~~~~~~~~~~--------d 66 (300)
T cd00300 1 ITIIGA--GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHA--SAFL--ATGTIVRGGDYADAA--------D 66 (300)
T ss_pred CEEECC--CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHC--CCCC--CCCEEECCCCHHHHC--------C
T ss_conf 989896--8899999999986799887999818998115688887725--6346--885398279889967--------9
Q ss_pred HHHH------------CCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 5431------------3583113455654440110558999998744778873899634657887886677750898770
Q gi|254780465|r 208 VFFC------------HSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEK 275 (469)
Q Consensus 208 ~~~~------------~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~k 275 (469)
.++. .+..|-..|.--.-.+.+ ++.+.+..- +.+=.+|==|+.+..+.|..|+|=+|
T Consensus 67 aDvvVitaG~~rkpg~tR~dll~~Na~I~k~i~~----------~i~~~~p~~-ivivvtNPvDv~t~~~~k~sg~p~~r 135 (300)
T cd00300 67 ADIVVITAGAPRKPGETRLDLINRNAPILRSVIT----------NLKKYGPDA-IILVVSNPVDILTYVAQKLSGLPKNR 135 (300)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH----------HHHHCCCCC-EEEECCCCHHHHHHHHHHHHCCCHHH
T ss_conf 9999987898999799889999988899999999----------998419971-89985796699999999961988442
Q ss_pred EEEE
Q ss_conf 5872
Q gi|254780465|r 276 LIIA 279 (469)
Q Consensus 276 li~A 279 (469)
++-.
T Consensus 136 viG~ 139 (300)
T cd00300 136 VIGS 139 (300)
T ss_pred EEEC
T ss_conf 8753
No 298
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.31 E-value=30 Score=15.15 Aligned_cols=74 Identities=19% Similarity=0.310 Sum_probs=44.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
++|...|-+|+ +--|.|.+..|. ..+.++++..-.. +..+..+ ++. ..+.+++.+.+| .+-++|+.+|+++...
T Consensus 5 ~gKvalITGas-~GIG~aiA~~la-~~Ga~V~l~~r~~~~l~~~~~-~i~-~~g~~~~~~~~Dvtd~~~v~~~v~~~~~~ 80 (238)
T PRK07666 5 QGKNALITGAG-RGIGRAVAIALA-KEGVNVGLLARSEENLKAVAK-EVE-AEGVKAVIATADVSDYEEVTTAIETLKNG 80 (238)
T ss_pred CCCEEEEECCC-CHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHH-HCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 99989991637-789999999999-879989999899999999999-999-55992799993079999999999999998
No 299
>pfam06309 Torsin Torsin. This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterized by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of (pfam00004) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia.
Probab=37.09 E-value=30 Score=15.12 Aligned_cols=79 Identities=25% Similarity=0.255 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 98999999998751578998999999999863047667860477248825466213898120682388899999999731
Q gi|254780465|r 50 SYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEE 129 (469)
Q Consensus 50 sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~ 129 (469)
.+..|-..+-....|..+- ++++-+|...|-. +..|-+ -+.=-|||||+.=|-+..+++|+-+ |-...
T Consensus 15 ~~~~Le~~L~~~lfGQhla----~~~v~~al~~~l~-~~~p~K------pLVlSfHG~tGtGKn~vs~liA~~L-y~~G~ 82 (127)
T pfam06309 15 NYHGLERDLARRLFGQHLV----KQLVVRSVKGHWE-NPKPRK------PLVLSFHGWTGTGKNFVAEIIADNL-YRDGL 82 (127)
T ss_pred CHHHHHHHHHHHCCCHHHH----HHHHHHHHHHHHC-CCCCCC------CEEEEECCCCCCCHHHHHHHHHHHH-HHCCC
T ss_conf 7799999998753477989----9999999999974-899999------7488701899987989999999998-75434
Q ss_pred CCCCEEEEECC
Q ss_conf 79820799716
Q gi|254780465|r 130 RDHYITIVGAT 140 (469)
Q Consensus 130 ~~~~~~il~AT 140 (469)
+.+-+....||
T Consensus 83 ~S~~Vh~fi~~ 93 (127)
T pfam06309 83 RSPYVHHFVAT 93 (127)
T ss_pred CCCCEEEECCC
T ss_conf 78756884242
No 300
>KOG2452 consensus
Probab=36.91 E-value=22 Score=16.06 Aligned_cols=38 Identities=24% Similarity=0.194 Sum_probs=23.8
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHH-HCCCEECCCHHHH
Q ss_conf 0001213421388999999999998-6395983833999
Q gi|254780465|r 353 KMSLSFSAKRASMEDVNSVIKSVLE-KSNYLVDPHTAVG 390 (469)
Q Consensus 353 ~l~~~f~s~svsDeet~~~Ik~~y~-~~gyiiDPHTAvG 390 (469)
.....|...|+.|+=+.....++-+ +-|-.+|-.|+-|
T Consensus 688 aagr~fi~~sihd~fv~~~vee~~~~~ig~pldr~t~hg 726 (881)
T KOG2452 688 AAGRLFVEDSIHDEFVRRVVEEVRKMKVGNPLDRDTDHG 726 (881)
T ss_pred HHCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 312154122235899999999998603589655655568
No 301
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase; InterPro: IPR011284 This entry represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis found in many plant and bacterial species. This enzyme is involved in type II fatty acid biosynthesis, where the individual metabolic transformations are carried out by different enzymes rather than by a single enzyme as occurs in type I fatty acid biosynthesis . Structural studies show that the enzyme is a tetramer which forms a typical Rossman fold , . Unlike other members of the short-chain dehydrogenase/reductase superfamily, the enzyme undergoes a marked conformational change upon binding of the NADP(H)cofactor. This conformational change aligns the side chains of the catalytic triad at the active site in an active conformation and increases the affinity of the enzyme for its substrate.; GO: 0004316 3-oxoacyl-[acyl-carrier-protein] reductase activity, 0051287 NAD binding, 0006633 fatty acid biosynthetic process.
Probab=36.81 E-value=31 Score=15.09 Aligned_cols=143 Identities=22% Similarity=0.295 Sum_probs=86.3
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCCHHHHC
Q ss_conf 99716654046799986166785599973577--676033213113447870899717-965888999999750154313
Q gi|254780465|r 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSDVFFCH 212 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D~~~~~ 212 (469)
+++..|.=-|.|.+..|+ +++.+|++-|=.+ +..++.+ .+... |-.+..+.+| .++|+|+++|+++..+.. -+
T Consensus 2 lVTGasRGIG~AIA~~LA-~~Ga~V~i~y~~~e~~~~~~~~-e~~~~-G~~a~~~~~dvs~~~~~~~~~~~~~~~~G-iD 77 (238)
T TIGR01830 2 LVTGASRGIGRAIALKLA-KEGAKVIITYRTSEEGAEEVVE-EIKEL-GVKAAGVVLDVSDREDVKALVEEAEEELG-ID 77 (238)
T ss_pred EECCCCCHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHHHH-HHHHC-CCEEEEEEECCCCHHHHHHHHHHHHHHHC-CE
T ss_conf 671678616799999998-6799599965982578889999-99856-97599996038888999999999999829-90
Q ss_pred C--------------------------CCCCCCCCCCHHHCCCCHHHHHHHHHHHC--CCCCCEEE-EE--ECCCHHHHH
Q ss_conf 5--------------------------83113455654440110558999998744--77887389-96--346578878
Q gi|254780465|r 213 S--------------------------VNLSGINSINWARIMAQIVYYFVSSIALG--SPNRNISF-SV--PTGNFGDIF 261 (469)
Q Consensus 213 ~--------------------------~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~--~~~~~i~f-~V--PtGNfGni~ 261 (469)
= .+|+|+ +| +.|-| ...+- +.++-||+ || =+||.| =
T Consensus 78 iLVNNAGITrD~Ll~RMk~edWd~Vi~~NL~g~-----F~-~t~~v-----~~~M~K~R~GrIINisSVVG~~GN~G--Q 144 (238)
T TIGR01830 78 ILVNNAGITRDNLLMRMKEEDWDAVINVNLKGV-----FN-LTQAV-----LRPMIKQRSGRIINISSVVGLMGNAG--Q 144 (238)
T ss_pred EEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHH-----HH-HHHHH-----HHHHHHHCCCCEEEEEEHHHHHCCCC--H
T ss_conf 899787413430100488556899998612668-----78-88998-----89887506743486100200006874--2
Q ss_pred HHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCC
Q ss_conf 8667775089877058723676335677532220102345565642
Q gi|254780465|r 262 AGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPA 307 (469)
Q Consensus 262 Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~Sps 307 (469)
|=|-|-|=|| |+ ++|-+..-.=++.-++-..+|=
T Consensus 145 aNYaASKAG~-IG-----------ftKSlAkElasRnItVNaVAPG 178 (238)
T TIGR01830 145 ANYAASKAGV-IG-----------FTKSLAKELASRNITVNAVAPG 178 (238)
T ss_pred HHHHHHHHHH-HH-----------HHHHHHHHCCCCCCEEEEECCC
T ss_conf 6788887558-99-----------9999998603687058887489
No 302
>pfam04034 DUF367 Domain of unknown function (DUF367).
Probab=36.44 E-value=23 Score=15.95 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=29.8
Q ss_pred EEECCCCC--CCHHHHCCCEEECCCCEEEEEECCCHHHHHHH-HHHHHCCHHHHCCCCCCCCCCCCHHHCC
Q ss_conf 99735776--76033213113447870899717965888999-9997501543135831134556544401
Q gi|254780465|r 161 YILFPEGR--ISVVQQKQMTTSEASNINVIAVQSSFDDCQKI-VKNLFSDVFFCHSVNLSGINSINWARIM 228 (469)
Q Consensus 161 ~vlyP~g~--vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~-Vk~~f~D~~~~~~~~l~s~NSIN~~Ril 228 (469)
+||-|.++ +|+--+. +.... . ...||++.-..... .+++-. ..-+.-=.|.++|.+||||.-
T Consensus 1 IvL~P~~~~~lsp~D~~-ii~~~--G--i~vvDCSW~~~~~~~f~~~~~-~~~R~LP~LvAaNPVNYGKP~ 65 (128)
T pfam04034 1 LVLTPFAEIALSPEDKD-IVERS--G--IAVVDCSWARLEEVPFKKIRG-RHERLLPFLVAANPVNYGKPC 65 (128)
T ss_pred CEECCCCCCCCCHHHHH-HHHHC--C--EEEEECCHHHCCHHHHHHHCC-CCCCCCCHHHCCCCCCCCCCC
T ss_conf 95489888510888899-99968--9--889989501010336766047-887666504324886668876
No 303
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=36.43 E-value=20 Score=16.44 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=9.6
Q ss_pred CCCCHHHHHHHHHHHH
Q ss_conf 7899899999999986
Q gi|254780465|r 65 QEIKSSKLRDIVNRSY 80 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay 80 (469)
+|-...+|++.+.+-|
T Consensus 53 Pd~~~~~Lr~~iA~~~ 68 (356)
T PRK08056 53 PDADYFHLHQALARHH 68 (356)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 9824899999999982
No 304
>PRK06483 short chain dehydrogenase; Provisional
Probab=36.25 E-value=31 Score=15.03 Aligned_cols=68 Identities=10% Similarity=0.149 Sum_probs=42.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 9820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
+|.+ +++..|+--|.|.+..|.. .+-+|++.+-... ...++ ....++..+.+| .+-++++.+++++..
T Consensus 2 ~ktV-lVTGas~GIG~aiA~~la~-~Ga~Vvi~~r~~~-~~~~~-----l~~~~~~~~~~Dv~~~~~v~~~~~~~~~ 70 (236)
T PRK06483 2 SAPI-LITGAGQRIGLALAKHLLA-QGQPVIVSYRSHY-PAIDE-----LRQAGATCIQADFSTNAGIMAFIDELKQ 70 (236)
T ss_pred CCEE-EEECCCCHHHHHHHHHHHH-CCCEEEEEECCCH-HHHHH-----HHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 9879-9978998899999999998-8998999959847-99999-----9856998999227999999999999999
No 305
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=36.19 E-value=31 Score=15.03 Aligned_cols=78 Identities=4% Similarity=0.071 Sum_probs=45.2
Q ss_pred HCCCCCEEEEECCCC-CHHHHHHHHHCCCCCCEEEEECCCCCCCHHH--HCCCEEECCCCEEEEEEC-CCHHHHHHHHHH
Q ss_conf 317982079971665-4046799986166785599973577676033--213113447870899717-965888999999
Q gi|254780465|r 128 EERDHYITIVGATSG-DTGAAAIKAFAGKKRINMYILFPEGRISVVQ--QKQMTTSEASNINVIAVQ-SSFDDCQKIVKN 203 (469)
Q Consensus 128 ~~~~~~~~il~ATSG-DTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q--~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~ 203 (469)
.-++|...|-+|++| --|.|.+..|. ..+-+|+|-|-...-...+ -+++... +.....+.+| .+-+++++++++
T Consensus 4 ~L~GK~alVTGaag~~GiG~aia~~la-~~GA~V~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dvs~~~~v~~~~~~ 81 (259)
T PRK07370 4 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYLPDEKGRFEKKVRELTEP-LNPSLFLPCNVQDDAQIEEVFET 81 (259)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH-HCCCEEEEEECCCCCHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHH
T ss_conf 999998999798998579999999999-8699999994787013589999999841-28648999128999999999999
Q ss_pred HHCC
Q ss_conf 7501
Q gi|254780465|r 204 LFSD 207 (469)
Q Consensus 204 ~f~D 207 (469)
+...
T Consensus 82 ~~~~ 85 (259)
T PRK07370 82 IKQK 85 (259)
T ss_pred HHHH
T ss_conf 9998
No 306
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=36.08 E-value=31 Score=15.02 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=32.9
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH
Q ss_conf 4787089971796588899999975015431358311345565444011055899999874
Q gi|254780465|r 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIAL 241 (469)
Q Consensus 181 ~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~ 241 (469)
..+|| .+++-|..-|+|.+|+.+-. ....+.+.--..|....+.-++.-+...|.|.
T Consensus 63 I~~~I-g~~~sG~~~D~~~lv~~~r~---~a~~~~~~~~~~i~v~~l~~~ls~~~q~~tq~ 119 (227)
T cd03750 63 ITPHI-GMVYSGMGPDFRVLVKKARK---IAQQYYLVYGEPIPVSQLVREIASVMQEYTQS 119 (227)
T ss_pred ECCCE-EEEEEECCCCHHHHHHHHHH---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 65975-89996256008999999999---99999999699734999999999999997345
No 307
>PRK07776 consensus
Probab=36.05 E-value=31 Score=15.01 Aligned_cols=71 Identities=17% Similarity=0.108 Sum_probs=43.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 798207997166540467999861667855999735776-76033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-ISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|.. +++..++--|.|.+..|. ..+-+|++.+.... .-+..+ ...++.+..+..| .+.|+++++++++..
T Consensus 7 ~gKv~-lITG~~~GIG~aiA~~la-~~Ga~V~i~~~~~~~l~~~~~----~l~~~~~~~~~~Dv~~~~~~~~~~~~~~~ 79 (252)
T PRK07776 7 TGRTA-IVTGASRGIGLAIAQALA-AAGANVVITARKQEALDEAAA----QLGAERALGVAGHAVDEEHAREAVDLTLE 79 (252)
T ss_pred CCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH----HHCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 99989-994778799999999999-879989999798899999999----84799579999742899999999999999
No 308
>PRK04309 DNA-directed RNA polymerase subunit A''; Validated
Probab=35.70 E-value=32 Score=14.98 Aligned_cols=35 Identities=6% Similarity=0.058 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 099989999999987515789989999999998630
Q gi|254780465|r 47 RGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHC 82 (469)
Q Consensus 47 ~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~ 82 (469)
.+|+ .++..++....-..-|++..++.++...-..
T Consensus 14 ~~~~-~~i~e~~~~~i~~~gi~~~~irsvlt~~~~~ 48 (381)
T PRK04309 14 SELP-ESLKEELEEKVKKYGLTEEEVEEIIKEVVRE 48 (381)
T ss_pred CCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 7998-7899999999988699899999999999998
No 309
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=35.37 E-value=32 Score=14.94 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=45.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
-++|.+ +++..|+.-|.|.+..|. ..+.+|+++--. +..+. .+.+++.+.+| .+.++++.+++++...
T Consensus 6 l~gK~a-lITG~s~GIG~aia~~la-~~Ga~V~~~~r~-------~~~l~--~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 74 (253)
T PRK08220 6 FSGKTV-WVTGAAQGIGYAVALAFV-EAGAKVIGFDQA-------FEQLN--EQYPFATFVLDVADAAAVAQVCQRLLAE 74 (253)
T ss_pred CCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEECC-------HHHHH--CCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 999989-995885689999999999-879999999788-------77874--8997799997379999999999999997
No 310
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=34.85 E-value=33 Score=14.89 Aligned_cols=56 Identities=7% Similarity=-0.051 Sum_probs=31.9
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHH
Q ss_conf 787089971796588899999975015431358311345565444011055899999874
Q gi|254780465|r 182 ASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIAL 241 (469)
Q Consensus 182 ~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~ 241 (469)
.+|+ .+++-|-.-||+.+++.+- .....+.+.---.|+.-.+.-.+.-+...|.|-
T Consensus 66 ~~~i-g~~~sGl~~D~~~li~~~r---~ea~~y~~~~~~~i~v~~La~~ls~~~q~yTq~ 121 (215)
T cd03754 66 TDEI-GCVMTGMIADSRSQVQRAR---YEAAEFKYKYGYEMPVDVLAKRIADINQVYTQH 121 (215)
T ss_pred CCCE-EEEEEECCHHHHHHHHHHH---HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 8987-9999706177999999999---999999998099988999999999999997177
No 311
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=22 Score=16.05 Aligned_cols=59 Identities=27% Similarity=0.317 Sum_probs=31.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 57899899999999986304766786047724882546621389812068238889999999
Q gi|254780465|r 64 GQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDH 125 (469)
Q Consensus 64 ~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~ 125 (469)
|.|..+..|.-.+-+-|.+-.+..---=+.|... .+ |--|||+|=|-+=+|.||++++-
T Consensus 65 GQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KS-NI--LLiGPTGsGKTlLAqTLAk~LnV 123 (408)
T COG1219 65 GQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKS-NI--LLIGPTGSGKTLLAQTLAKILNV 123 (408)
T ss_pred CCHHHHCEEEEEEEHHHHHHHCCCCCCCEEEEEC-CE--EEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6254310346641068899860488776353203-17--99888997577999999998489
No 312
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=34.52 E-value=33 Score=14.85 Aligned_cols=268 Identities=13% Similarity=0.201 Sum_probs=115.8
Q ss_pred CCCCCHHHHHHHCCCCHHHHHH---HHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCC-CCCC
Q ss_conf 7888988998770999899999---99987515789989999999998630476678604772488254662138-9812
Q gi|254780465|r 35 IPRLSEKEIKDLRGLSYQEIAL---FIFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHG-PTLS 110 (469)
Q Consensus 35 ~p~~~~~~~~~~~~~sy~e~a~---~il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~~~~vlELfHG-PT~a 110 (469)
.|.++.++|.+.-+- -.++|. +.+....++++.++.-.+|.+..+..++. + .++ .| .-|| -|++
T Consensus 98 ~p~~~~~~l~~~vPe-L~~ia~i~~~~l~ni~S~nM~P~~W~~iA~~i~~~~~~-g-------~DG-~V--ItHGTDTMa 165 (421)
T PRK04183 98 TPAFTAEDLLRAVPE-LADIANIKAEVLFNILSENMTPEYWQEIAEAVAEEIEN-G-------ADG-VV--VAHGTDTMH 165 (421)
T ss_pred EECCCHHHHHHHCCC-HHHEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHC-C-------CCE-EE--EEECCCHHH
T ss_conf 435899999874804-44368899999714654537989999999999998666-8-------987-99--921675299
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECC--CCCHHH--------HHHHHHCCCCCCEEEE----------ECCCCCCC
Q ss_conf 068238889999999973179820799716--654046--------7999861667855999----------73577676
Q gi|254780465|r 111 FKDIAMQFIAELMDHILEERDHYITIVGAT--SGDTGA--------AAIKAFAGKKRINMYI----------LFPEGRIS 170 (469)
Q Consensus 111 FKD~a~q~l~~~~~~~l~~~~~~~~il~AT--SGDTGs--------Aa~~a~~~~~~i~v~v----------lyP~g~vS 170 (469)
..+..|.+.++..++.+++.+|- ++..++ |+..|......+-++. +|+-.|+.
T Consensus 166 -------yTAsALSFml~~~~KPVVlTGSQrp~~~~sSDa~~NL~~Av~~A~s~~~eV~Vvfh~~~~D~~~~l~rG~rvr 238 (421)
T PRK04183 166 -------YTAAALSFMLRKTPVPIVFVGAQRSSDRPSSDAAMNLIAAVLAATSDIAEVVVVMHGETSDTYCALHRGTRVR 238 (421)
T ss_pred -------HHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEEEECCCEE
T ss_conf -------9999999996389998899687778888686079999999998647999877997231477636888615358
Q ss_pred HHHHCCCEEECCCCEEEEEE-CCCHHHHHHHHHHHHCCHHHHC----CCCCCC--CCCCCHHHCCCCHHH-HHHHHHHHC
Q ss_conf 03321311344787089971-7965888999999750154313----583113--455654440110558-999998744
Q gi|254780465|r 171 VVQQKQMTTSEASNINVIAV-QSSFDDCQKIVKNLFSDVFFCH----SVNLSG--INSINWARIMAQIVY-YFVSSIALG 242 (469)
Q Consensus 171 ~~Q~~qmtt~~~~Nv~~i~v-~G~FDDcq~~Vk~~f~D~~~~~----~~~l~s--~NSIN~~Ril~Q~vy-Yf~a~~~~~ 242 (469)
..--...-+....|.-+++. +++-.+ ..+.. +.++ ...+.. -..+-..++-|-+-= .+-++++-
T Consensus 239 K~hts~~dAF~S~N~~pLa~v~~~~~~------~~~~~-~~~~r~~~~~~~~~~l~~~V~llk~~PG~~~~~l~~~~~~- 310 (421)
T PRK04183 239 KMHTSRRDAFQSINDTPLAKVDPETGK------VKLSR-DYRKRGEKELELNDKLEEKVALVKFYPGMDPEILDFYVDK- 310 (421)
T ss_pred ECCCCCCCCCCCCCCCCEEEEECCCCE------EEECC-CCCCCCCCCEEECCCCCCCEEEEEECCCCCHHHHHHHHHC-
T ss_conf 735797422459899820799658735------88344-4566788860415567882799997799899999999746-
Q ss_pred CCCCCEEE-EEECCCHHHHHHHHH--HHHCCCCCCEEEEECCC-CC-HHHHHHHCCC-HHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 77887389-963465788788667--77508987705872367-63-3567753222-0102345565642001340137
Q gi|254780465|r 243 SPNRNISF-SVPTGNFGDIFAGYM--AKMMGLPIEKLIIATNE-ND-TLVRMFDMGM-YRPEIVMETTSPAMDIQIPSNF 316 (469)
Q Consensus 243 ~~~~~i~f-~VPtGNfGni~Ag~~--Ak~MGLPI~kli~AtN~-Nd-iL~rf~~tG~-y~~~~~~~T~SpsMDI~v~SNf 316 (469)
.-+-|.+ ..=.||...-+...+ |.+-|.|| +.+|-. +. +--....+|. ...-.+. ++-|..--.-+
T Consensus 311 -g~kGIVleg~G~Gnvp~~l~~~i~~a~~~Gi~V---V~tSQc~~G~V~~~vY~~Gr~l~~~GvI----~g~DMt~EaA~ 382 (421)
T PRK04183 311 -GYKGIVIEGTGLGHVSTDLIPSIKRATDDGVPV---VMTSQCLYGRVNMNVYSTGRELLAAGVI----PGEDMLPEVAY 382 (421)
T ss_pred -CCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEE---EEECCCCCCCCCCCHHHHHHHHHHCCCC----CCCCCCHHHHH
T ss_conf -987899971658999989999999999889989---9968889786370133667999978857----67998999999
Q ss_pred HHHHHHHHCC-CHHHHHHHHHH
Q ss_conf 8899987097-08999999875
Q gi|254780465|r 317 ERLLFEISGR-NSLLVKEAFYS 337 (469)
Q Consensus 317 ERllf~l~~~-d~~~v~~~m~~ 337 (469)
-.|.|.+... |.+.++++|.+
T Consensus 383 ~KLmwlLg~~~d~~~ik~~m~~ 404 (421)
T PRK04183 383 VKLMWVLGNTDDLEEVKELMLT 404 (421)
T ss_pred HHHHHHHCCCCCHHHHHHHHCC
T ss_conf 9999996699999999999707
No 313
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=34.47 E-value=33 Score=14.85 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=14.7
Q ss_pred EEEEEECCCHHHHHHHHHHH--HCCCCC
Q ss_conf 38996346578878866777--508987
Q gi|254780465|r 248 ISFSVPTGNFGDIFAGYMAK--MMGLPI 273 (469)
Q Consensus 248 i~f~VPtGNfGni~Ag~~Ak--~MGLPI 273 (469)
+-+.+-+..|+.+.+ +++ .++|||
T Consensus 236 vmv~~~~~G~~a~~~--L~~~~~~~lpI 261 (407)
T TIGR03332 236 LLFNVFAYGLDVLQS--LAEDDEIPVPI 261 (407)
T ss_pred EEEECCCCCHHHHHH--HHHCCCCCCEE
T ss_conf 999576555999999--98478988438
No 314
>PRK09620 hypothetical protein; Provisional
Probab=34.40 E-value=33 Score=14.84 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=40.7
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCH
Q ss_conf 9971665404679998616678559997357767603321311344787089971796588899999975015
Q gi|254780465|r 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDV 208 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~ 208 (469)
|=-.+||-+|.|.+.++..+ +-+|.+++-.....+ +.....+.+..+++ .+|++..+++++..+
T Consensus 23 ItN~SSGkmG~aiA~~a~~~-GA~Vtli~g~~~~~p-------~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~ 86 (229)
T PRK09620 23 HTNMAKGTIGRIIAEELISK-GAHVIYLHGYFAEKP-------NDINNQLELHPFEG-IIDLQDKMKSIITHE 86 (229)
T ss_pred ECCCCCHHHHHHHHHHHHHC-CCEEEEEECCCCCCC-------CCCCCCCEEEEEEE-HHHHHHHHHHHHCCC
T ss_conf 27768239999999999977-997999945887789-------87788835898500-999999999984567
No 315
>KOG1511 consensus
Probab=34.31 E-value=17 Score=16.81 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=7.1
Q ss_pred CHHHHHHHHHHHHCCC
Q ss_conf 5788788667775089
Q gi|254780465|r 256 NFGDIFAGYMAKMMGL 271 (469)
Q Consensus 256 NfGni~Ag~~Ak~MGL 271 (469)
.++-..|.-+++..|+
T Consensus 151 a~sv~lAtall~~~g~ 166 (397)
T KOG1511 151 AISVALATALLRLAGL 166 (397)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999997356
No 316
>PRK12744 short chain dehydrogenase; Provisional
Probab=34.06 E-value=34 Score=14.80 Aligned_cols=160 Identities=10% Similarity=0.250 Sum_probs=74.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEEC-CCCCC-CHHHHCCCEE--ECCCCEEEEEEC-CCHHHHHHHHHHH
Q ss_conf 79820799716654046799986166785599973-57767-6033213113--447870899717-9658889999997
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILF-PEGRI-SVVQQKQMTT--SEASNINVIAVQ-SSFDDCQKIVKNL 204 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vly-P~g~v-S~~Q~~qmtt--~~~~Nv~~i~v~-G~FDDcq~~Vk~~ 204 (469)
++|...|-+| |+--|.|.+..|. ..+-++++++ -..+- ...++ .... ..+..+..+.+| .+-++|++++.++
T Consensus 7 ~gKvalVTGg-s~GIG~aiA~~la-~~Ga~vv~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~ 83 (257)
T PRK12744 7 KGKVVLIAGG-AKNLGGLIARDLA-AQGAKAVAIHYNSAATKADAEE-TVAAVKAAGAKAVAFQADLTTAAAVEKLFDDA 83 (257)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHH-HCCCEEEEEECCCCCCHHHHHH-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9998999288-7589999999999-8799899993787436899999-99999973992899976889999999999999
Q ss_pred HCCHHHHCCCC-------------CCCCCCCCHHHCCCC---HHHHHH--HHHHHCCCCCCEEEEE-ECCCHHHHHHHHH
Q ss_conf 50154313583-------------113455654440110---558999--9987447788738996-3465788788667
Q gi|254780465|r 205 FSDVFFCHSVN-------------LSGINSINWARIMAQ---IVYYFV--SSIALGSPNRNISFSV-PTGNFGDIFAGYM 265 (469)
Q Consensus 205 f~D~~~~~~~~-------------l~s~NSIN~~Ril~Q---~vyYf~--a~~~~~~~~~~i~f~V-PtGNfGni~Ag~~ 265 (469)
... | .++. +.....-.|-+++-- .+|++. +...+.+.++-|+++. -.+.+..-++.|-
T Consensus 84 ~~~--~-G~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~m~~~G~ii~i~ss~~~~~~~~~~~Y~ 160 (257)
T PRK12744 84 KAA--F-GRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTPFYSAYA 160 (257)
T ss_pred HHH--C-CCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHCCCCCHHHHH
T ss_conf 998--0-9988999766445677233322888888988887669999999999874189499998115446789518899
Q ss_pred HHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCC
Q ss_conf 775089877058723676335677532220102345565642
Q gi|254780465|r 266 AKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPA 307 (469)
Q Consensus 266 Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~Sps 307 (469)
|-|-|+- -|+|.+..--=...-.+.+++|-
T Consensus 161 asKaav~------------~ltr~lA~ela~~gIrVNaVaPG 190 (257)
T PRK12744 161 GSKAPVE------------HFTRAASKEFGARGISVTAVGPG 190 (257)
T ss_pred HHHHHHH------------HHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 9999999------------99999999965449699999638
No 317
>TIGR01235 pyruv_carbox pyruvate carboxylase; InterPro: IPR005930 In the postabsorptive state, blood glucose concentration is kept constant by a combination of glycogenolysis and gluconeogenesis. During prolonged fasting, when hepatic glycogen is exhausted, gluconeogenesis becomes the only source of plasma glucose. Gluconeogenesis (the production of new glucose molecules) occurs mainly in liver and, to a small extent, in kidneys. Pyruvate carboxylase (6.4.1.1 from EC), a member of the biotin-dependent enzyme family, catalyses the ATP-dependent carboxylation of pyruvate to oxaloacetate, thus playing a crucial role in gluconeogenesis. ATP + pyruvate + HCO3- = ADP + phosphate + oxaloacetate Most well characterised forms of active enzyme consist of four identical subunits arranged in a tetrahedron-like structure. Each subunit contains three functional domains: the biotin carboxylation domain, the transcarboxylation domain and the biotin carboxyl carrier domain.; GO: 0004736 pyruvate carboxylase activity, 0006094 gluconeogenesis, 0005737 cytoplasm.
Probab=33.82 E-value=12 Score=17.84 Aligned_cols=352 Identities=19% Similarity=0.231 Sum_probs=160.1
Q ss_pred HHHHHHHHHHCCCCCCCEEE-ECCCCCEEEEECCCCCCCCCCCHHHHHHHHH-HHHHHCCCCCEEEEECCCCCHHHHHHH
Q ss_conf 99999986304766786047-7248825466213898120682388899999-999731798207997166540467999
Q gi|254780465|r 73 RDIVNRSYHCFRNAAVTPLI-QLNANEFLLELFHGPTLSFKDIAMQFIAELM-DHILEERDHYITIVGATSGDTGAAAIK 150 (469)
Q Consensus 73 ~~ii~~ay~~f~~~~~~pl~-~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~-~~~l~~~~~~~~il~ATSGDTGsAa~~ 150 (469)
++++..=...+|-..|+|-+ ..=+++|-||.|=|-|. |+|||||-..= ++.-.-|..--||+-= =-+.
T Consensus 563 QSLLATRvRthDL~~IA~~~ah~l~~lfSLE~WGGATF---DVA~RFL~EDPWeRL~~lR~~vPN~lfQ-------MLLR 632 (1169)
T TIGR01235 563 QSLLATRVRTHDLAKIAPTTAHALPNLFSLECWGGATF---DVAMRFLHEDPWERLEDLRKEVPNILFQ-------MLLR 632 (1169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHCCCHHH---HHHHHHCCCCHHHHHHHHHHHCCCHHHH-------HHHH
T ss_conf 76787887788665301268887303300020586116---7876515788379999998546852468-------8875
Q ss_pred HHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCC-HHHHCCCC------CCCCCCCC
Q ss_conf 861667855999735776760332131134478708997179658889999997501-54313583------11345565
Q gi|254780465|r 151 AFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSD-VFFCHSVN------LSGINSIN 223 (469)
Q Consensus 151 a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D-~~~~~~~~------l~s~NSIN 223 (469)
+. |---+-=||++=|-.+=++---+ |=-|+-| || |-+-|+.+-.- .+.++.-. .-+--=.|
T Consensus 633 gA----NaVGYtnYPDNvv~~Fv~qa~~~--GiD~FRv-----FD-sLN~l~~l~l~~dAv~~~gkv~EAAicYtGDil~ 700 (1169)
T TIGR01235 633 GA----NAVGYTNYPDNVVKKFVKQAAQS--GIDIFRV-----FD-SLNWLENLKLGMDAVKEAGKVVEAAICYTGDILD 700 (1169)
T ss_pred HH----HHHCCCCCCHHHHHHHHHHHHHC--CCEEEEC-----CC-CCCCCCCCHHHHHHHHHCCCEEEEEEEEECCCCC
T ss_conf 41----00002477534899999988846--8307870-----01-1133210201636777509979999752003268
Q ss_pred HHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHH----HH--------HC-CCCCCEEEEE-----------
Q ss_conf 444011055899999874477887389963465788788667----77--------50-8987705872-----------
Q gi|254780465|r 224 WARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYM----AK--------MM-GLPIEKLIIA----------- 279 (469)
Q Consensus 224 ~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~----Ak--------~M-GLPI~kli~A----------- 279 (469)
.+|-==-.-||---+-+|.+.|--| .+| ==+||.+ || +. +||| +|+-=
T Consensus 701 ~~r~KYdL~YYt~lA~eL~~aGaHI-L~i------KDMAGlLKP~AAk~L~~ALre~~PD~Pi-H~HTHDtSG~ava~~~ 772 (1169)
T TIGR01235 701 PARKKYDLKYYTNLAEELVKAGAHI-LGI------KDMAGLLKPAAAKLLIKALREKIPDLPI-HLHTHDTSGAAVASML 772 (1169)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCE-EEE------HHHHCCCHHHHHHHHHHHHHHCCCCCCE-EEECCCCHHHHHHHHH
T ss_conf 8897437788999999999709803-430------1011244289999999999732799856-8626661268999999
Q ss_pred ---CCCCCHHHHHHH--CCC-H--HCCCCCCCCCC-CCCCC-CHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCC----
Q ss_conf ---367633567753--222-0--10234556564-20013-4013788999870970899999987520265105----
Q gi|254780465|r 280 ---TNENDTLVRMFD--MGM-Y--RPEIVMETTSP-AMDIQ-IPSNFERLLFEISGRNSLLVKEAFYSLENKKYFR---- 345 (469)
Q Consensus 280 ---tN~NdiL~rf~~--tG~-y--~~~~~~~T~Sp-sMDI~-v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~---- 345 (469)
.==-|++.-.++ +|. - +...++.+++= -.|-+ ++...+||=+|+ +.+|.++-.|+.+-..+
T Consensus 773 aaveAGvDvvDvAv~smSG~TSQPS~~a~~~aL~G~~~dpgln~~~v~~ls~YW-----e~~R~~Ya~FEstt~lKsP~~ 847 (1169)
T TIGR01235 773 AAVEAGVDVVDVAVDSMSGLTSQPSLGALVAALEGSERDPGLNVEDVRELSAYW-----EEVRKLYAAFESTTDLKSPDS 847 (1169)
T ss_pred HHHHCCCCEEHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH-----HHHHHHHHHHHCCCCCCCCCC
T ss_conf 998758861145676410450033389999972789898888989998987889-----999744211110367887785
Q ss_pred -C-----CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC----EE--CCCHH-HHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf -5-----20221100012134213889999999999986395----98--38339-999999998747998399997188
Q gi|254780465|r 346 -I-----DSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNY----LV--DPHTA-VGIHAALACRKSSSTPMVTLATAH 412 (469)
Q Consensus 346 -i-----~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gy----ii--DPHTA-vG~~aa~~~~~~~~~p~VvLATAH 412 (469)
+ |.-.+..|+ |-+.++-=.+--+..|+.|.+-|+ |+ =|-+= ||=-|..--.++-... =|.+-|.
T Consensus 848 evY~hE~PGGQytNL~--~QA~~lGLg~~w~~vk~aYr~aN~llGDIvKVTPSSKVVGDlAlfMV~n~LT~~-dV~~~~~ 924 (1169)
T TIGR01235 848 EVYLHEIPGGQYTNLQ--FQAKSLGLGDRWEEVKKAYREANQLLGDIVKVTPSSKVVGDLALFMVSNDLTED-DVVEKAE 924 (1169)
T ss_pred CCCCCCCCCCHHHHHH--HHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCCHH-HHHCCCC
T ss_conf 4333578850446799--998654831268999999999877519838983787226547876430301568-7313345
Q ss_pred CCCCHHHHHHHHCCC----C-CCCHHHHHHHCCC--CCEEEC------CCCHHHHHHHHHHHH
Q ss_conf 434988899980879----8-8898898874172--110106------899999999999611
Q gi|254780465|r 413 PSKFPDTVKAASGIV----P-DCPISLEQMMRRP--ENCKVM------NKNIDEIKKFIKKRN 462 (469)
Q Consensus 413 PaKFpe~V~~Aig~~----~-~~P~~L~~l~~k~--e~~~~l------~nd~~~ik~fI~~k~ 462 (469)
-.-|||+|-.-+.-. + -.|+.|++.-=|. ++++.= |-|++++|+-|+++-
T Consensus 925 ~l~FP~SVv~~l~G~iGqP~gGFPE~l~~~vLk~k~~~~t~RPG~~L~p~dld~~k~~l~~~~ 987 (1169)
T TIGR01235 925 ELDFPDSVVEFLKGDIGQPHGGFPEPLRKKVLKGKEKPITVRPGELLEPLDLDKIKKDLQEKH 987 (1169)
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 778746899983377783348887256889960889750117876678576688999999862
No 318
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=33.67 E-value=34 Score=14.76 Aligned_cols=50 Identities=28% Similarity=0.416 Sum_probs=36.1
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHHCCCEEE
Q ss_conf 317982079971665404679998616678559997357767--60332131134
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI--SVVQQKQMTTS 180 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v--S~~Q~~qmtt~ 180 (469)
+-++.++.|++| |--|+.++.... ..++.-+.+.-.+.| |.+||+++.+.
T Consensus 21 kL~~s~VlIVGa--GGLGs~~a~~La-~aGVG~l~ivD~D~Ve~SNL~RQ~L~~~ 72 (337)
T PRK12475 21 KIREKHVLIIGA--GALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTE 72 (337)
T ss_pred HHHCCCEEEECC--CHHHHHHHHHHH-HCCCCEEEEEECCEECCCCCCCCCCCCH
T ss_conf 986396999977--777899999999-8289869998499831446745300222
No 319
>pfam03853 YjeF_N YjeF-related protein N-terminus.
Probab=33.45 E-value=35 Score=14.73 Aligned_cols=59 Identities=15% Similarity=0.380 Sum_probs=29.7
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHH---CC-CCCCEEEEECCCCCCCHHHHCCCE
Q ss_conf 9999999973179820799716654046799986---16-678559997357767603321311
Q gi|254780465|r 119 IAELMDHILEERDHYITIVGATSGDTGAAAIKAF---AG-KKRINMYILFPEGRISVVQQKQMT 178 (469)
Q Consensus 119 l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~---~~-~~~i~v~vlyP~g~vS~~Q~~qmt 178 (469)
.++.+........+++.|+| -.|+.|.-+..+. +. --.+.++.+.|..+.|+.-++|+.
T Consensus 16 ~a~~i~~~~~~~~~~v~il~-G~GNNGGDGlv~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~ 78 (170)
T pfam03853 16 VARVIRKLLSPAGKRVLVLC-GPGNNGGDGLAAARHLAQRGYKVTVLLLNPDEKLSEDARRALE 78 (170)
T ss_pred HHHHHHHHCCCCCCEEEEEE-CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHH
T ss_conf 99999986187788699998-7998728899999999987990799996785559999999999
No 320
>pfam09872 DUF2099 Uncharacterized protein conserved in archaea (DUF2099). This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.29 E-value=19 Score=16.48 Aligned_cols=30 Identities=27% Similarity=0.377 Sum_probs=18.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCEECCCHHH
Q ss_conf 421388999999999998639598383399
Q gi|254780465|r 360 AKRASMEDVNSVIKSVLEKSNYLVDPHTAV 389 (469)
Q Consensus 360 s~svsDeet~~~Ik~~y~~~gyiiDPHTAv 389 (469)
|+-+.-.-+.+.|.++-++.|+++||+||-
T Consensus 119 SGLv~TtPIpevi~~Ie~~ggiVLd~~tA~ 148 (257)
T pfam09872 119 SGLVETTPIPEVIDKIEEKGGIVLDPETAK 148 (257)
T ss_pred EEEEECCCCHHHHHHHHHCCCEEECCCCCC
T ss_conf 301436663999999987698785665551
No 321
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=33.13 E-value=35 Score=14.70 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=44.1
Q ss_pred CCCCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716-654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGAT-SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|...|-+|+ ++--|.|.+.+|. ..+-++++-|-.++..+--+ +.....+. ...+.+| .+-|++++++.++-.
T Consensus 5 ~gK~~lVTGa~~~~GIG~aia~~la-~~Ga~v~~~~~~~~~~~~~~-~~~~~~g~-~~~~~~Dv~~~~~v~~~~~~~~~ 80 (261)
T PRK08690 5 QGKKILITGMISERSIAYGIAKACR-EQGAELAFTYVVDKLEERVR-KMAAELDS-ELVFRCDVASDDEINQVFADLGK 80 (261)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHH-HCCCEEEEECCCCHHHHHHH-HHHHHCCC-CEEEECCCCCHHHHHHHHHHHHH
T ss_conf 9988999898786389999999999-85999999737615599999-99987398-08998899999999999999999
No 322
>TIGR00623 sula cell division inhibitor SulA; InterPro: IPR004596 All proteins in this family for which the functions are known are cell division inhibitors. In Escherichia coli, SulA is one of the SOS regulated genes. Accumulation of SulA causes rapid cessation of cell division and the appearance of long, non-septate filaments. The expression of SulA is repressed by LexA. The N-terminus of SulA may be involved in recognising the cell division apparatus.; GO: 0009432 SOS response, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=32.98 E-value=15 Score=17.25 Aligned_cols=30 Identities=10% Similarity=0.267 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHHH--HHCCCEECCCHHHHHH
Q ss_conf 38899999999999--8639598383399999
Q gi|254780465|r 363 ASMEDVNSVIKSVL--EKSNYLVDPHTAVGIH 392 (469)
Q Consensus 363 vsDeet~~~Ik~~y--~~~gyiiDPHTAvG~~ 392 (469)
.+++|..+..+..- +.+|+|+-|-.+++-.
T Consensus 122 LTEee~~~L~~AA~~G~a~GFIMRP~r~~s~~ 153 (168)
T TIGR00623 122 LTEEEHAKLVEAAEEGNAMGFIMRPVRAISQP 153 (168)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCHHCCCC
T ss_conf 47678999999985389712533780210345
No 323
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=32.62 E-value=36 Score=14.64 Aligned_cols=46 Identities=20% Similarity=0.338 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC--CHHHHCCCEE
Q ss_conf 982079971665404679998616678559997357767--6033213113
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI--SVVQQKQMTT 179 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v--S~~Q~~qmtt 179 (469)
+.++.|++| |==||+++.-+++ .++.-+.+.=.+.| |-+||+++.+
T Consensus 21 ~s~VLiiGa--GgLGs~~~~~LA~-AGVG~i~i~D~D~V~~SNLqRQ~Lf~ 68 (210)
T TIGR02356 21 ASHVLIIGA--GGLGSPAALYLAA-AGVGTITIVDDDHVDLSNLQRQILFA 68 (210)
T ss_pred HCCEEEEEE--CHHHHHHHHHHHH-CCCCEEEEEECCEECHHHCHHHHHHC
T ss_conf 086599972--6145689999982-88837899851677010120554303
No 324
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=32.62 E-value=29 Score=15.27 Aligned_cols=75 Identities=13% Similarity=0.246 Sum_probs=35.6
Q ss_pred CCCEEEEECCCCCHHHH---HHHHHCCCC-CCEEEEECCCCCCCHHHHCCCEEECC--CCEEEEEECCCHHHHHHHHHHH
Q ss_conf 98207997166540467---999861667-85599973577676033213113447--8708997179658889999997
Q gi|254780465|r 131 DHYITIVGATSGDTGAA---AIKAFAGKK-RINMYILFPEGRISVVQQKQMTTSEA--SNINVIAVQSSFDDCQKIVKNL 204 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsA---a~~a~~~~~-~i~v~vlyP~g~vS~~Q~~qmtt~~~--~Nv~~i~v~G~FDDcq~~Vk~~ 204 (469)
.+++ ++++-+|+.|.= |+.-.+... .+.++.+.+..++..-|.++.....+ ..+...+.+..+.+|.-+|..+
T Consensus 49 ~~~v-~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~~~v~~~~~~~~~~~~dvIVDal 127 (203)
T COG0062 49 ARRV-LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIGGVVKIKELEDEPESADVIVDAL 127 (203)
T ss_pred CCEE-EEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCCEEEEEC
T ss_conf 8779-999889986278999999998679846999707987760899999888516884134033446665378999804
Q ss_pred HC
Q ss_conf 50
Q gi|254780465|r 205 FS 206 (469)
Q Consensus 205 f~ 206 (469)
|-
T Consensus 128 fG 129 (203)
T COG0062 128 FG 129 (203)
T ss_pred EE
T ss_conf 20
No 325
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=32.54 E-value=30 Score=15.16 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=8.5
Q ss_pred CCCEEEEEE-CCCHHHHHHHHHHH
Q ss_conf 787089971-79658889999997
Q gi|254780465|r 182 ASNINVIAV-QSSFDDCQKIVKNL 204 (469)
Q Consensus 182 ~~Nv~~i~v-~G~FDDcq~~Vk~~ 204 (469)
++.++.++| +|.|--|-.||+.+
T Consensus 67 g~~i~llcVLKG~~~F~aDLv~~l 90 (231)
T PTZ00149 67 NEEFHIICLLKGSRGFFSALLKHL 90 (231)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 981799999646278899999998
No 326
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=32.49 E-value=36 Score=14.63 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEEC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCC
Q ss_conf 789989999999998630476678604772-4882546621389812068238889999999973179820799716654
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYHCFRNAAVTPLIQL-NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGD 143 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l-~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGD 143 (469)
+-+..+...+.+.+|...=+ -......+ ...+.-.=||+||-++-|-..+..++..+. +...+.. -.|.
T Consensus 6 ~ivGQe~v~~~L~~A~~~~R--~~~~~~~~~~~~~~HAyLF~Gp~G~Gk~~~A~~~A~~l~--C~~~~~~------~cg~ 75 (395)
T PRK07940 6 RLVGQDAVVAELRAAARAAR--ADSAHSAAAGSGMTHAWLFTGPPGSGRSNAARAFAAALQ--CTDPGVP------GCGE 75 (395)
T ss_pred HHCCCHHHHHHHHHHHHHCC--CCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHC--CCCCCCC------CCCC
T ss_conf 31592999999999998363--434433334687660376368998788999999999966--9999999------9987
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 046799986166785599973577
Q gi|254780465|r 144 TGAAAIKAFAGKKRINMYILFPEG 167 (469)
Q Consensus 144 TGsAa~~a~~~~~~i~v~vlyP~g 167 (469)
. ..-.-+....+-++.++.|.|
T Consensus 76 C--~~C~~i~~g~hpDv~~i~p~~ 97 (395)
T PRK07940 76 C--RACRTVLAGTHPDVRVVVPEG 97 (395)
T ss_pred C--HHHHHHHCCCCCCEEEEECCC
T ss_conf 8--789998768998718982687
No 327
>TIGR01975 isoAsp_dipep beta-aspartyl peptidase; InterPro: IPR010229 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of proteins include metallopeptidases belonging to the MEROPS peptidase family M38 (clan MJ, beta-aspartyl dipeptidase family). This entry includes the beta-aspartyl dipeptidase from Escherichia coli, (3.4.19.5 from EC, IadA), which degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This entry also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that may have an equivalent in function. This family shows homology to dihydroorotases. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerisation, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase..
Probab=32.24 E-value=35 Score=14.73 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCEEE---EEEC-CCHHHHHHHHHHHHC---CCCCCEEEEECCCCCHHHHHHHCCCHHCCCC
Q ss_conf 55899999874477887389---9634-657887886677750---8987705872367633567753222010234
Q gi|254780465|r 231 IVYYFVSSIALGSPNRNISF---SVPT-GNFGDIFAGYMAKMM---GLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300 (469)
Q Consensus 231 ~vyYf~a~~~~~~~~~~i~f---~VPt-GNfGni~Ag~~Ak~M---GLPI~kli~AtN~NdiL~rf~~tG~y~~~~~ 300 (469)
-..-||+.++..+.+..|++ +.|- -.=|.+.++==-||| |+||.|+=-+|-.|-.++-|=.+|.|..-.+
T Consensus 229 ~~~LFE~g~~fa~~GG~iDlTss~~p~~~~egev~p~eGlk~~l~~gvPle~vT~sSDgnGS~P~Fde~g~l~~~~v 305 (391)
T TIGR01975 229 NRELFEAGLEFAKKGGTIDLTSSIDPQFRKEGEVKPAEGLKKLLEAGVPLEKVTFSSDGNGSLPLFDENGELKGLGV 305 (391)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEE
T ss_conf 75689999999973980876027888755355437678999999638975235642357887463767874633576
No 328
>PRK06181 short chain dehydrogenase; Provisional
Probab=32.21 E-value=36 Score=14.60 Aligned_cols=72 Identities=18% Similarity=0.349 Sum_probs=43.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 820799716654046799986166785599973577-676033213113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
|...|-+| |+--|.|.+..|. ..+-++++..-.. +..++.+ ++. ..+..+..+.+| .+-|+|+++++++...
T Consensus 2 Kv~lITGa-ssGIG~a~A~~la-~~Ga~vvl~~r~~~~l~~~~~-~l~-~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~ 75 (263)
T PRK06181 2 KVVIITGA-SEGIGRALAVRLA-RAGARLVLAARNEERLASLAQ-ELA-NYGAEALVVATDVSDAEACERLIEAAVAH 75 (263)
T ss_pred CEEEEECC-CCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHH-HCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 99999581-0199999999999-879989999889999999999-999-54996799980799999999999999998
No 329
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=31.74 E-value=37 Score=14.55 Aligned_cols=213 Identities=18% Similarity=0.244 Sum_probs=115.1
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHC
Q ss_conf 20799716654046799986166785599973577676033213113447870899717965888999999750154313
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCH 212 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~ 212 (469)
+..|.|+++|+-|-..-- ....=+-++.|--..+ ..-=++.+.- ..+|.+++-++++..+-.--++.....+ .
T Consensus 134 ~y~iaVGSTGNLGLSIGI-msa~LGF~v~VHMSaD--AkqWKKd~LR--~~GV~VvE~~~DYs~AV~~gR~~a~~DP--~ 206 (404)
T cd06447 134 QYSIAVGSTGNLGLSIGI-MAAALGFKVTVHMSAD--AKQWKKDKLR--SKGVTVVEYETDYSKAVEEGRKQAAADP--M 206 (404)
T ss_pred CCEEEEECCCCCHHHHHH-HHHHCCCCEEEECCCC--HHHHHHHHHH--HCCCEEEEECCCHHHHHHHHHHHHHCCC--C
T ss_conf 576898537752057999-9986078679971566--4778999998--6598799952877999999999874099--7
Q ss_pred CCCCCCCCCCCHHHCCCCHHHHHHHHHHHC----------CCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 583113455654440110558999998744----------7788738996346578878866777508987705872367
Q gi|254780465|r 213 SVNLSGINSINWARIMAQIVYYFVSSIALG----------SPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNE 282 (469)
Q Consensus 213 ~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~----------~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~ 282 (469)
-+.+--=||.+.. ++ |--|..++. +...|+-+-+|+|=-|-=-. +| -|| |++-.
T Consensus 207 ~~FVDDEnS~~LF--lG----YavAa~rLk~QL~~~gi~Vd~~hPLfVYLPCGVGG~PGG--Va--fGL---K~~fG--- 270 (404)
T cd06447 207 CYFVDDENSRDLF--LG----YAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGG--VA--FGL---KLIFG--- 270 (404)
T ss_pred EEEECCCCHHHHH--HH----HHHHHHHHHHHHHHCCCEECCCCCEEEEECCCCCCCCHH--HH--HHH---HHHHC---
T ss_conf 2795188717788--77----899999999999982973369987189963787876058--88--879---98824---
Q ss_pred CCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHH--HHH------------HCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 63356775322201023455656420013401378899--987------------0970899999987520265105520
Q gi|254780465|r 283 NDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLL--FEI------------SGRNSLLVKEAFYSLENKKYFRIDS 348 (469)
Q Consensus 283 NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERll--f~l------------~~~d~~~v~~~m~~l~~~g~~~i~~ 348 (469)
|-+|-|| +-+|.||+|=.+..+-.-.-+ +|+ -++-+..|.+.|+.+
T Consensus 271 -d~VhcfF---------aEPthsPcmllG~~Tglhd~isV~D~Gldn~T~ADGLAVgR~S~fvg~~m~~l---------- 330 (404)
T cd06447 271 -DNVHCFF---------AEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPL---------- 330 (404)
T ss_pred -CCEEEEE---------ECCCCCHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHH----------
T ss_conf -8438998---------47875678999887568889853421677764555650367217899999987----------
Q ss_pred HHHHHHHCCCC-CCCCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHH
Q ss_conf 22110001213-42138899999999999863959838339999999998
Q gi|254780465|r 349 EHLQKMSLSFS-AKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALAC 397 (469)
Q Consensus 349 ~~l~~l~~~f~-s~svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~ 397 (469)
++ .+.++|++.....+.+.+..|+.+.|-.+.|+.+-...
T Consensus 331 ---------l~G~~Tv~D~~ly~~l~~l~~~e~i~lEPSA~Ag~~Gp~~l 371 (404)
T cd06447 331 ---------LSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQV 371 (404)
T ss_pred ---------HCEEEEECHHHHHHHHHHHHHHCCCEECCHHHCCCCCHHHH
T ss_conf ---------48538816899999999998751976476344305155998
No 330
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=31.68 E-value=37 Score=14.54 Aligned_cols=354 Identities=11% Similarity=0.067 Sum_probs=165.2
Q ss_pred CCCCCCCCCCCCCCCCCHHHH-----HHHCCCCHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHHCCCCCCCEEEEC
Q ss_conf 678786328610788898899-----8770999899999999875157899---89999999998630476678604772
Q gi|254780465|r 23 LATDGGLYIPKYIPRLSEKEI-----KDLRGLSYQEIALFIFRLFIGQEIK---SSKLRDIVNRSYHCFRNAAVTPLIQL 94 (469)
Q Consensus 23 la~DGGL~vP~~~p~~~~~~~-----~~~~~~sy~e~a~~il~~f~~~~i~---~~~l~~ii~~ay~~f~~~~~~pl~~l 94 (469)
+..-||-||||.+-. ..++| .-+.+..|.+--.+.++.|+|-.-| .+.+.+-+.+-+ .+
T Consensus 279 fG~fGG~~vpe~L~~-~l~el~~~~~~~~~d~~F~~e~~~~l~~y~GRptpl~~a~~~~~~l~~~~------------g~ 345 (695)
T PRK13802 279 WGQFGGRYVPEALIT-ALDELERVYTQAKADPEFHKEFMTLQQRYVGRPSPLTEAPRFAALVKEKT------------GL 345 (695)
T ss_pred CCCCCCEECCHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCC------------CC
T ss_conf 668688858388899-99999999999855999999999999962899983412278999873326------------88
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCC--HH
Q ss_conf 4882546621389812068238889999999973179820799716654046799986166785599973577676--03
Q gi|254780465|r 95 NANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRIS--VV 172 (469)
Q Consensus 95 ~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS--~~ 172 (469)
+...|+=-=--..|+|+|=- ..+++.+ +.++.+|+-+|--.-.|--|.|.+.+++ .=++++.|+-=...+. +.
T Consensus 346 ga~iylKREDLnhtGaHKiN--n~lgQal--lAKrmGkkriiaETGAGQhGvAtAta~A-~~GleC~VyMG~~D~~rQ~~ 420 (695)
T PRK13802 346 DARIFLKREDLNHTGAHKIN--NALGQAL--LVKRMGKTRVIAETGAGQHGVATATVCA-MLGLKCRIYMGQIDARRQAL 420 (695)
T ss_pred CCEEEEEECCCCCCCCCHHH--HHHHHHH--HHHHHCCCEEEECCCCCHHHHHHHHHHH-HHCCCEEEEECCCCHHHCCH
T ss_conf 85699841124677764166--5999999--9998099648833586277899999999-80996399964664000337
Q ss_pred HHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHH---CCCCCCCCCCCCHHHC---CCCHHHHHHHHHHHCC-CC
Q ss_conf 321311344787089971796588899999975015431---3583113455654440---1105589999987447-78
Q gi|254780465|r 173 QQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFC---HSVNLSGINSINWARI---MAQIVYYFVSSIALGS-PN 245 (469)
Q Consensus 173 Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~---~~~~l~s~NSIN~~Ri---l~Q~vyYf~a~~~~~~-~~ 245 (469)
...-|-.. |-+| +.|+-.---....+.+.+.|+--. ..+-++|+=.-.+... .-|.|---.+-.|+.. .+
T Consensus 421 nv~rM~ll-GA~V--v~v~~Gs~tLkdAinEAlrdwv~~~~~t~Y~lGSv~GPhP~P~~Vr~fQsVIG~Ear~Q~~e~~G 497 (695)
T PRK13802 421 NVARMRML-GAEV--VEVTLGDKILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAKQQLQDWYG 497 (695)
T ss_pred HHHHHHHC-CCEE--EEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79999986-9889--98158862078999999999985866405872464578854899999999989999999999848
Q ss_pred -CCEEEEE-ECC---CHHHHHHHHHHHH----CCCCCC------EEEEECC-----CCCHHHHHHHCCCH-HCCCCCCC-
Q ss_conf -8738996-346---5788788667775----089877------0587236-----76335677532220-10234556-
Q gi|254780465|r 246 -RNISFSV-PTG---NFGDIFAGYMAKM----MGLPIE------KLIIATN-----ENDTLVRMFDMGMY-RPEIVMET- 303 (469)
Q Consensus 246 -~~i~f~V-PtG---NfGni~Ag~~Ak~----MGLPI~------kli~AtN-----~NdiL~rf~~tG~y-~~~~~~~T- 303 (469)
+..+.+| ..| ||.-++..|+.-+ .|.--. .-.+|+= +--+||-+-+-=.- +.....+|
T Consensus 498 ~~lPD~vvACVGGGSNa~G~f~pFl~d~~V~ligVEa~G~g~~~g~haa~~~~g~g~~GvlhG~~sylLqd~~Gqi~~~~ 577 (695)
T PRK13802 498 IDHPDAICACVGGGSNAIGVMNAFLDDERVNLYGYEAGGNGPESGKHAIRFAPGTGQLGMFQGAKSYLLETDEGQTLDTY 577 (695)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCCC
T ss_conf 99998599804775888875565318834014643214578777741332057899863066632034558897888998
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCE
Q ss_conf -5642001340137889998709708999999875202651055202211000121342138899999999999863959
Q gi|254780465|r 304 -TSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYL 382 (469)
Q Consensus 304 -~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyi 382 (469)
+|.-+|-. +-+...+.|. ..|. ....+++|+|.++.-+.+-...|++
T Consensus 578 SIsAGLdYp--------------GvGPeha~L~----d~GR--------------v~y~~~tD~EaleAf~~l~r~EGIi 625 (695)
T PRK13802 578 SISAGLDYA--------------SVGPEHAWLK----DIGR--------------VNYSWATDEEAMNAFRDLSQTEGII 625 (695)
T ss_pred CCCCCCCCC--------------CCCHHHHHHH----HCCC--------------EEEEECCHHHHHHHHHHHHHHCCCE
T ss_conf 667899999--------------8798999987----5698--------------5999428899999999999834984
Q ss_pred ECCCHHHHHHHHHHHHH----CC-C-CCEEEEECCCCCCCHHHHHHHHCCCCC
Q ss_conf 83833999999999874----79-9-839999718843498889998087988
Q gi|254780465|r 383 VDPHTAVGIHAALACRK----SS-S-TPMVTLATAHPSKFPDTVKAASGIVPD 429 (469)
Q Consensus 383 iDPHTAvG~~aa~~~~~----~~-~-~p~VvLATAHPaKFpe~V~~Aig~~~~ 429 (469)
--|-++-+++.+.+.-. +. . .-+|+-=.-|.-|--.++.+-.|...+
T Consensus 626 PAlESsHAvA~a~k~A~~~~~~g~~~~iivvnlSGrGdkD~~t~~~~~g~~~~ 678 (695)
T PRK13802 626 PAIESSHAVAGAYKAAADLKAKGYDKAVMIVNISGRGDKDMATAGKWFGYLTD 678 (695)
T ss_pred ECCHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHCCCCH
T ss_conf 05726899999999998678456887289997468973029899999487524
No 331
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=31.53 E-value=37 Score=14.53 Aligned_cols=158 Identities=14% Similarity=0.133 Sum_probs=79.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH-HHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCC--
Q ss_conf 98207997166540467999861667855999735776760-332131134478708997179658889999997501--
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV-VQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSD-- 207 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~-~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D-- 207 (469)
.+++.=+||.+| .+.+-.....+..++.-.-=.....+ -|+..-.....+.|.++ + +|.+...|..-.+
T Consensus 45 ~~~IlDlGaG~G---~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~--~---~Di~~~~~~~~~~~f 116 (248)
T COG4123 45 KGRILDLGAGNG---ALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI--E---ADIKEFLKALVFASF 116 (248)
T ss_pred CCEEEEECCCCC---HHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEE--H---HHHHHHHHCCCCCCC
T ss_conf 876988368946---89999745587780799981799999999988618613401676--4---308876542365654
Q ss_pred ------HHHHCCCCCCCCCCCC-HHHCCCCHHHH--HHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEE-
Q ss_conf ------5431358311345565-44401105589--9999874477887389963465788788667775089877058-
Q gi|254780465|r 208 ------VFFCHSVNLSGINSIN-WARIMAQIVYY--FVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI- 277 (469)
Q Consensus 208 ------~~~~~~~~l~s~NSIN-~~Ril~Q~vyY--f~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli- 277 (469)
+++-+...-...|... .+|-+...-.- .-+..++.++++.+.|+.|...+..|+. +.++|++..+++.
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~ei~~--~l~~~~~~~k~i~~ 194 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAEIIE--LLKSYNLEPKRIQF 194 (248)
T ss_pred CEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHH--HHHHCCCCCEEEEE
T ss_conf 7899598987875334867466556632228899999999997467978999955888899999--99866987158998
Q ss_pred EECCCCCHHHHHHHCCCHHCC
Q ss_conf 723676335677532220102
Q gi|254780465|r 278 IATNENDTLVRMFDMGMYRPE 298 (469)
Q Consensus 278 ~AtN~NdiL~rf~~tG~y~~~ 298 (469)
|.+..+..-+|.+-++....+
T Consensus 195 V~p~~~k~A~~vLv~~~k~~~ 215 (248)
T COG4123 195 VYPKIGKAANRVLVEAIKGGK 215 (248)
T ss_pred ECCCCCCCCEEEEEEEECCCC
T ss_conf 627888751699999860888
No 332
>PTZ00072 40S ribosomal protein S13; Provisional
Probab=31.42 E-value=37 Score=14.51 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=47.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHCCC
Q ss_conf 13889999999999986395983833999999999874799839999718843498889998087988898898874172
Q gi|254780465|r 362 RASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRP 441 (469)
Q Consensus 362 svsDeet~~~Ik~~y~~~gyiiDPHTAvG~~aa~~~~~~~~~p~VvLATAHPaKFpe~V~~Aig~~~~~P~~L~~l~~k~ 441 (469)
..+.+|+.+.|-+..++ |+ +-+-+|+. +|..-+.|.|-+.|-. |... |.+.-|..|++|+.|..|+.+-
T Consensus 24 ~~~~~eve~~I~klakk-G~---t~SqIG~~----LRD~~gip~Vk~vtG~--ki~~-ILk~~gl~p~iPEDL~~LikKA 92 (148)
T PTZ00072 24 KLSSRDVVDQICKLAKK-GL---TPSQIGVY----LRDSMGIPQVKNVTGR--KILR-ILKHRGLAPEIPEDLYFLIKKA 92 (148)
T ss_pred CCCHHHHHHHHHHHHHC-CC---CHHHCCCE----ECCCCCCCCEEECCCC--HHHH-HHHHCCCCCCCCHHHHHHHHHH
T ss_conf 79999999999999977-99---98771201----3345775532111356--3999-9998799899958999999999
Q ss_pred CC
Q ss_conf 11
Q gi|254780465|r 442 EN 443 (469)
Q Consensus 442 e~ 443 (469)
-+
T Consensus 93 v~ 94 (148)
T PTZ00072 93 VQ 94 (148)
T ss_pred HH
T ss_conf 99
No 333
>cd01701 Pol_zeta Pol_zeta, a member of the Y-family of DNA polymerases. Y-family polymerases can transverse normal replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at higher error rate. The Y-family has no 3'-5' exonuclease activity. Pol zeta has also been named Rev1; this subfamily is mainly present in eukaryotes.
Probab=31.19 E-value=37 Score=14.49 Aligned_cols=79 Identities=13% Similarity=0.214 Sum_probs=34.2
Q ss_pred CCCCEEEEEECCCHH-----------HHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 478708997179658-----------889999997501543135831134556544401105589999987447788738
Q gi|254780465|r 181 EASNINVIAVQSSFD-----------DCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNIS 249 (469)
Q Consensus 181 ~~~Nv~~i~v~G~FD-----------Dcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~ 249 (469)
-.+.|.+++||-.|= +...+++++= +...++.+|+.-=-|-.-++|+.+ +..+.+++. .
T Consensus 140 ~~~~vE~~SIDEaylDvt~~~~~~~~~~~~~a~~Ir--~~I~~~tglt~SiGIa~nK~lAKi------As~~~KP~G--~ 209 (405)
T cd01701 140 YTDNIEAVSCDEALVDITSLLEETYELPEELAETIR--NEIKETTGCSASVGIGPNILLARL------ATRKAKPNG--Q 209 (405)
T ss_pred HCCCCEECCCCCEEEECCCCHHHCCCCHHHHHHHHH--HHHHHHHCCCEEECCCCCHHHHHH------HHHHCCCCC--C
T ss_conf 597514512332467335411112677999999999--999998799756443764999999------887369987--3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 996346578878866777508987705
Q gi|254780465|r 250 FSVPTGNFGDIFAGYMAKMMGLPIEKL 276 (469)
Q Consensus 250 f~VPtGNfGni~Ag~~Ak~MGLPI~kl 276 (469)
++||.++.-.. .-.|||++|
T Consensus 210 ~~i~~~~~~~~-------L~~lpv~~i 229 (405)
T cd01701 210 YYLSPEKVEEF-------LDTLPVKDL 229 (405)
T ss_pred CCCCHHHHHHH-------HHHCCCCCC
T ss_conf 23687899999-------985521115
No 334
>KOG0733 consensus
Probab=31.14 E-value=38 Score=14.48 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=24.4
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHH-HHHCCCCCEEEEECCCCCHHHHHHHHHCCC-CCCEEEEEC
Q ss_conf 21389812068238889999999-973179820799716654046799986166-785599973
Q gi|254780465|r 103 LFHGPTLSFKDIAMQFIAELMDH-ILEERDHYITIVGATSGDTGAAAIKAFAGK-KRINMYILF 164 (469)
Q Consensus 103 LfHGPT~aFKD~a~q~l~~~~~~-~l~~~~~~~~il~ATSGDTGsAa~~a~~~~-~~i~v~vly 164 (469)
|+|||-++=|-+=++-++.=+.. |++...- -|+..-||.+-...-+-|... .+.-++||.
T Consensus 227 LlHGPPGCGKT~lA~AiAgel~vPf~~isAp--eivSGvSGESEkkiRelF~~A~~~aPcivFi 288 (802)
T KOG0733 227 LLHGPPGCGKTSLANAIAGELGVPFLSISAP--EIVSGVSGESEKKIRELFDQAKSNAPCIVFI 288 (802)
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEEECCH--HHHCCCCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 6448998647899999752128854851414--6531557522899999999873669759985
No 335
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=31.05 E-value=38 Score=14.47 Aligned_cols=67 Identities=19% Similarity=0.269 Sum_probs=42.1
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 99716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
|++..|+--|.|.+..|. ..+-+|++.+-.. +.....+ ++.. .+ +++.+..| .+.+|++++|+++..
T Consensus 4 lITGas~GIG~aiA~~la-~~Ga~V~i~~r~~~~l~~~~~-~l~~-~g-~~~~~~~Dv~~~~~v~~~v~~~~~ 72 (259)
T PRK08340 4 LVTASSRGIGFNVARELL-KKGARVVISSRNEENLEKALK-ELKE-LG-EVYAIKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred EEECCCCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHH-HHHH-CC-CEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 997587789999999999-879999999799899999999-9874-18-879999636998999999999999
No 336
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.98 E-value=38 Score=14.46 Aligned_cols=59 Identities=25% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHCCCEECCCHHHHHHHHH----H----HHHCCCCCEEEEECCCCCCCHHHHHHHHC
Q ss_conf 999999999998639598383399999999----9----87479983999971884349888999808
Q gi|254780465|r 366 EDVNSVIKSVLEKSNYLVDPHTAVGIHAAL----A----CRKSSSTPMVTLATAHPSKFPDTVKAASG 425 (469)
Q Consensus 366 eet~~~Ik~~y~~~gyiiDPHTAvG~~aa~----~----~~~~~~~p~VvLATAHPaKFpe~V~~Aig 425 (469)
+...+.|| .|++.=.++|--|++...... . ++.-.+.--+++=|+||.-|+|.+.--+.
T Consensus 113 ~~l~~~~k-~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvhp~~l~e~~~~rir 179 (235)
T COG2874 113 DLLLEFIK-RWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVHPSALDEDVLTRIR 179 (235)
T ss_pred HHHHHHHH-HHCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCHHHHHHHH
T ss_conf 99975577-52377899953437765264999999999999987289789999473433789999998
No 337
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=30.85 E-value=19 Score=16.51 Aligned_cols=22 Identities=32% Similarity=0.381 Sum_probs=15.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 1389812068238889999999
Q gi|254780465|r 104 FHGPTLSFKDIAMQFIAELMDH 125 (469)
Q Consensus 104 fHGPT~aFKD~a~q~l~~~~~~ 125 (469)
-=|||+|=|=+=+|.||+.|+-
T Consensus 157 LiGPTGSGKTLLAqTLA~~L~V 178 (452)
T TIGR00382 157 LIGPTGSGKTLLAQTLARILNV 178 (452)
T ss_pred EECCCCCCHHHHHHHHHHHCCC
T ss_conf 5468885268999999987388
No 338
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=30.73 E-value=38 Score=14.44 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=4.9
Q ss_pred CCCCCCCCCCH
Q ss_conf 65642001340
Q gi|254780465|r 303 TTSPAMDIQIP 313 (469)
Q Consensus 303 T~SpsMDI~v~ 313 (469)
-.=||.||..|
T Consensus 342 g~yPAIdvl~S 352 (435)
T PRK08472 342 GIYPPINILNS 352 (435)
T ss_pred CCCCCCCCCCC
T ss_conf 99998486314
No 339
>TIGR02939 RpoE_Sigma70 RNA polymerase sigma factor RpoE; InterPro: IPR014286 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognized by the major sigma factors , . This entry represents the clade of sigma factors called RpoE. These proteins are variously annotated as sigma-24, sigma-E factor, sigma-H factor, fecI-like sigma factor or alternative sigma factor AlgU.; GO: 0003677 DNA binding, 0003700 transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, 0006355 regulation of transcription DNA-dependent.
Probab=30.52 E-value=24 Score=15.82 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHCCCC
Q ss_conf 899999987520265
Q gi|254780465|r 328 SLLVKEAFYSLENKK 342 (469)
Q Consensus 328 ~~~v~~~m~~l~~~g 342 (469)
...|.+.|+.|.++=
T Consensus 131 ~~~v~~a~~aLPE~L 145 (192)
T TIGR02939 131 EQTVNKALEALPEDL 145 (192)
T ss_pred HHHHHHHHHHCCHHH
T ss_conf 999999986172678
No 340
>cd02152 OAT Ornithine acetyltransferase (OAT) family; also referred to as ArgJ. OAT catalyzes the first and fifth steps in arginine biosynthesis, coupling acetylation of glutamate with deacetylation of N-acetylornithine, which allows recycling of the acetyl group in the arginine biosynthetic pathway. Members of this family may experience feedback inhibition by L-arginine. The active enzyme is a heterotetramer of two alpha and two beta chains, where the alpha and beta chains are the result of autocatalytic cleavage. OATs found in the clavulanic acid biosynthesis gene cluster catalyze the fifth step only, and may utilize acetyl acceptors other than glutamate.
Probab=30.48 E-value=38 Score=14.41 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=23.1
Q ss_pred EEEECC--CHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHH
Q ss_conf 997179--6588899999975015431358311345565444011055
Q gi|254780465|r 187 VIAVQS--SFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIV 232 (469)
Q Consensus 187 ~i~v~G--~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~v 232 (469)
.+.|.| +..||..+-+.+-+..-++..+ ..+-=|||||+.-+=
T Consensus 270 ~v~V~gA~s~~~A~~vA~sIanSpLVKtAi---~G~DPNWGRI~~AiG 314 (390)
T cd02152 270 EVTVTGAASEEDARKVARAIANSPLVKTAI---FGEDPNWGRILAAVG 314 (390)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCHHHHHHH---HCCCCCHHHHHHHCC
T ss_conf 999927889999999999874487888898---467998889998706
No 341
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=30.38 E-value=39 Score=14.40 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=17.4
Q ss_pred HHHHCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 9973179820799716-65404679998616678559997
Q gi|254780465|r 125 HILEERDHYITIVGAT-SGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 125 ~~l~~~~~~~~il~AT-SGDTGsAa~~a~~~~~~i~v~vl 163 (469)
..++...+.-|+|||| ||-| --.|+-.+ .-|--.+|+
T Consensus 23 ~~l~~G~~~QtLLGvTGsGKT-FT~AnVIa-~~~rPTLV~ 60 (667)
T TIGR00631 23 EGLEAGEKEQTLLGVTGSGKT-FTMANVIA-QVQRPTLVL 60 (667)
T ss_pred HHHHCCCCCEEEEEEECCCHH-HHHHHHHH-HHCCCEEEE
T ss_conf 998568871478532148627-88989999-847984998
No 342
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006257 This group of sequences represent one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria, but not the Gram-positive bacteria.; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006090 pyruvate metabolic process, 0045254 pyruvate dehydrogenase complex.
Probab=30.31 E-value=14 Score=17.43 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=10.8
Q ss_pred CCCEEEEECCCCCCCHHHHCC
Q ss_conf 785599973577676033213
Q gi|254780465|r 156 KRINMYILFPEGRISVVQQKQ 176 (469)
Q Consensus 156 ~~i~v~vlyP~g~vS~~Q~~q 176 (469)
.+-=.=||-|.| .+++|-.|
T Consensus 178 ~GYLAKILVP~G-T~~~~~~~ 197 (584)
T TIGR01349 178 EGYLAKILVPEG-TRDVQLNT 197 (584)
T ss_pred CCEEEEEECCCC-CCCCCCCC
T ss_conf 761899872888-75663788
No 343
>PRK08265 short chain dehydrogenase; Provisional
Probab=30.01 E-value=39 Score=14.35 Aligned_cols=156 Identities=16% Similarity=0.156 Sum_probs=77.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCCHHH
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-9658889999997501543
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSDVFF 210 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D~~~ 210 (469)
.|..+++..|+--|.|.+..|.. .+-+|++..=.. ... .+.....+..++.+..| .+-++++.+++++....
T Consensus 6 gKvalVTGgs~GIG~aia~~la~-~Ga~V~i~~~~~--~~~--~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~f-- 78 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVA-AGACVAILDIDA--DNG--AAVAASLGERARFIATDITDDAAIERAVATAVARF-- 78 (261)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCH--HHH--HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH--
T ss_conf 99899948776899999999998-799899997988--999--99999819972899813899999999999999981--
Q ss_pred HCCCC-C-----------CCCCCCCHHHCCCCHH-HHHHH---HH-HHCCC-CCCEEEEEECCCHHHHH-HHHHHHHCCC
Q ss_conf 13583-1-----------1345565444011055-89999---98-74477-88738996346578878-8667775089
Q gi|254780465|r 211 CHSVN-L-----------SGINSINWARIMAQIV-YYFVS---SI-ALGSP-NRNISFSVPTGNFGDIF-AGYMAKMMGL 271 (469)
Q Consensus 211 ~~~~~-l-----------~s~NSIN~~Ril~Q~v-yYf~a---~~-~~~~~-~~~i~f~VPtGNfGni~-Ag~~Ak~MGL 271 (469)
.++. | .....-.|-+.+---+ -.|+. .+ .+.+. ++-|+++=-+|..|.-. +.|-|-|.|+
T Consensus 79 -G~iDiLVNNAg~~~~~~~~~~~e~w~~~~~vNl~~~~~~~q~~~~~m~~~~G~IInisS~~~~~~~~~~~~Y~asKaal 157 (261)
T PRK08265 79 -GGLDILVNLACTYVDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLKRGGGAIVNFTSISAKVAQTGRWLYPASKAAI 157 (261)
T ss_pred -CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf -9987899857557887343999999999999839999999999999987697799996533045788850679999999
Q ss_pred CCCEEEEECCCCCHHHHHHHCCCHHC-CCCCCCCCCCC
Q ss_conf 87705872367633567753222010-23455656420
Q gi|254780465|r 272 PIEKLIIATNENDTLVRMFDMGMYRP-EIVMETTSPAM 308 (469)
Q Consensus 272 PI~kli~AtN~NdiL~rf~~tG~y~~-~~~~~T~SpsM 308 (469)
- -|+|.+.. +|.+ .-.+.++||.+
T Consensus 158 ~------------~ltk~lA~-e~a~~gIrVN~IaPG~ 182 (261)
T PRK08265 158 R------------QLTRSMAM-DLAPDGIRVNSVSPGW 182 (261)
T ss_pred H------------HHHHHHHH-HHHHHCEEEEEEEECC
T ss_conf 9------------99999999-9741092998885587
No 344
>PTZ00325 malate dehydrogenase; Provisional
Probab=29.85 E-value=39 Score=14.34 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=28.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 82079971665404679998616678559997357
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPE 166 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~ 166 (469)
.++.|++| +|..|++.+.+....+-.+-++|+--
T Consensus 2 ~KV~IIGA-~G~VG~s~A~~l~~~~~~~elvL~Di 35 (313)
T PTZ00325 2 FKVAVLGA-AGGIGQPLSLLLKRNPYVSTLSLYDI 35 (313)
T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 38999899-98699999999983899777999808
No 345
>TIGR01886 dipeptidase dipeptidase PepV; InterPro: IPR011291 Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site . The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This entry represents a small clade of dipeptidase enzymes from the Lactobacillaceae, which belong to MEROPS peptidase family M20A. The Lactococcus lactis enzyme has been shown to act on a wide range of dipeptides, but not larger peptides. The enzyme from Lactobacillus delbrueckii was originally characterised as a Xaa-His dipeptidase, specifically a carnosinase (beta-Ala-His) by complementation of an Escherichia coli mutant. Further study, including the crystallisation of the enzyme , has shown it to also be a non-specific dipeptidase. This group also includes enzymes from Streptococcus and Enterococcus..
Probab=29.84 E-value=39 Score=14.33 Aligned_cols=36 Identities=17% Similarity=0.191 Sum_probs=18.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCC--EEEEECC
Q ss_conf 79820799716654046799986166785--5999735
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRI--NMYILFP 165 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i--~v~vlyP 165 (469)
-.|++--++.|.=.||=+=+.-+-...-+ -=|+|-|
T Consensus 144 ~~KKIrFvvGtnEEtgW~d~DYYf~Hee~PlPDfgFSP 181 (480)
T TIGR01886 144 LSKKIRFVVGTNEETGWVDMDYYFKHEETPLPDFGFSP 181 (480)
T ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 65417678607656676342300023788878834488
No 346
>KOG2728 consensus
Probab=29.82 E-value=39 Score=14.33 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=36.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEE------------------ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 2068238889999999973179820799------------------7166540467999861667855999735776760
Q gi|254780465|r 110 SFKDIAMQFIAELMDHILEERDHYITIV------------------GATSGDTGAAAIKAFAGKKRINMYILFPEGRISV 171 (469)
Q Consensus 110 aFKD~a~q~l~~~~~~~l~~~~~~~~il------------------~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~ 171 (469)
++-|.+. ++..+++......++++..+ --++|..|+|.++.|- ..+-.|+-||-+...-|
T Consensus 10 ~~~d~~s-~~~eFi~~q~s~~~rrIVlVTSGGTtVPLE~ntVRFiDNFSaGtRGAaSAE~Fl-~agYaVIFl~R~~Sl~P 87 (302)
T KOG2728 10 SLDDPGS-LIEEFIKLQASLQGRRIVLVTSGGTTVPLEQNTVRFIDNFSAGTRGAASAEYFL-AAGYAVIFLYRERSLFP 87 (302)
T ss_pred CCCCHHH-HHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCEEEEECCCCCCCCCHHHHHHH-HCCCEEEEEEECCCCCC
T ss_conf 5663567-999999987405586499994498572135572576505576776503189998-67945999860466664
Q ss_pred HHHC
Q ss_conf 3321
Q gi|254780465|r 172 VQQK 175 (469)
Q Consensus 172 ~Q~~ 175 (469)
.-|.
T Consensus 88 y~R~ 91 (302)
T KOG2728 88 YTRH 91 (302)
T ss_pred CCCC
T ss_conf 2024
No 347
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=29.76 E-value=28 Score=15.39 Aligned_cols=51 Identities=12% Similarity=0.293 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHH------HCCC----------C----CCCEEEECCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 78998999999999863------0476----------6----78604772488254662138981206823888
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYH------CFRN----------A----AVTPLIQLNANEFLLELFHGPTLSFKDIAMQF 118 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~------~f~~----------~----~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~ 118 (469)
.+|++..++++-.+|-. .|.+ + +++ ..+.....|-+.++--|- .|||=--+
T Consensus 32 G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~-~~~fet~k~~~tIiDaPG--HrdFvknm 102 (428)
T COG5256 32 GEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVA-HSKFETDKYNFTIIDAPG--HRDFVKNM 102 (428)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEE-EEEEECCCCEEEEEECCC--HHHHHHHH
T ss_conf 797989999999999861977168999853886678666689977-788643770589960784--67789876
No 348
>pfam01960 ArgJ ArgJ family. Members of the ArgJ family catalyse the first EC:2.3.1.1 and fifth steps EC:2.3.1.35 in arginine biosynthesis.
Probab=29.47 E-value=40 Score=14.29 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=19.1
Q ss_pred EEEECC--CHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHH
Q ss_conf 997179--6588899999975015431358311345565444011055
Q gi|254780465|r 187 VIAVQS--SFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIV 232 (469)
Q Consensus 187 ~i~v~G--~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~v 232 (469)
.+.|.| +-+|+..+.+.+-+..-.+..+ -.+-=|||||+.-+=
T Consensus 267 ~V~V~gA~s~~~A~~iA~sIa~S~LVKTAi---~G~DpNWGRI~~AiG 311 (387)
T pfam01960 267 EVTVTGAASEEDARKVARAIANSPLVKTAI---FGEDPNWGRILAAVG 311 (387)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCHHHHHHH---HCCCCCHHHHHHHCC
T ss_conf 999927889999999999974486888998---468988889998706
No 349
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.30 E-value=40 Score=14.27 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHH
Q ss_conf 820799716654046799986166785599973577--676033213113447870899717-9658889999997
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNL 204 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~ 204 (469)
.|..|++..++--|.|.+..|. ..+-+|++.+-.. ...++.+ ++.. .|..+..+..| .+-++|+.+|+.+
T Consensus 9 GKvalVTGas~GIGraiA~~lA-~~GA~Vvi~d~~~~~~~~~~~~-ei~~-~G~~~~~~~~Dvsd~~~v~~lv~~~ 81 (303)
T PRK07792 9 GKVAVVTGAAAGLGRAEALGLA-RLGATVVVNDIASALDASDVLD-EIRA-AGAKAVAVAGDISQRATADELVATA 81 (303)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHH-HHHH-CCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9989992886689999999999-8699999971897247999999-9984-4993899966768999999999999
No 350
>PRK07208 hypothetical protein; Provisional
Probab=28.95 E-value=41 Score=14.23 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=11.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 982079971665404679998616678559997
Q gi|254780465|r 131 DHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 131 ~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
++++.|++| |=||.+|++-.+. .+.++.||
T Consensus 3 ~kkv~IiGA--G~~GL~aA~~L~~-~g~~v~vl 32 (474)
T PRK07208 3 KKSVVIIGA--GPAGLTAAYELVK-RGYPVTIL 32 (474)
T ss_pred CCEEEEECC--CHHHHHHHHHHHH-CCCCEEEE
T ss_conf 875999897--6899999999986-89975999
No 351
>PRK07582 cystathionine gamma-lyase; Validated
Probab=28.66 E-value=41 Score=14.20 Aligned_cols=12 Identities=33% Similarity=0.418 Sum_probs=6.3
Q ss_pred CCHHHHHHHHHH
Q ss_conf 708999999875
Q gi|254780465|r 326 RNSLLVKEAFYS 337 (469)
Q Consensus 326 ~d~~~v~~~m~~ 337 (469)
+++.++.+|.++
T Consensus 255 ~nA~~lA~~L~~ 266 (370)
T PRK07582 255 QNALAVAELLRE 266 (370)
T ss_pred HHHHHHHHHHHC
T ss_conf 789999999970
No 352
>TIGR02389 RNA_pol_rpoA2 DNA-directed RNA polymerase, subunit A''; InterPro: IPR012757 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme . The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length . The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kD, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of the archaeal A'' subunit of the DNA-directed RNA polymerase. The example from Methanococcus jannaschii contains an intein.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006350 transcription.
Probab=28.63 E-value=4.6 Score=20.81 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=14.1
Q ss_pred CCCCCCCHHHHHH-HHHHHHCCCHHHHHHHHHHHCCCC
Q ss_conf 4200134013788-999870970899999987520265
Q gi|254780465|r 306 PAMDIQIPSNFER-LLFEISGRNSLLVKEAFYSLENKK 342 (469)
Q Consensus 306 psMDI~v~SNfER-llf~l~~~d~~~v~~~m~~l~~~g 342 (469)
|+|-|=-.-++++ .-| |.+++.+.=++++.+.
T Consensus 98 P~MtIYL~~ey~~dyay-----drE~a~~va~kie~t~ 130 (397)
T TIGR02389 98 PLMTIYLEDEYEKDYAY-----DREKAEEVAKKIEATK 130 (397)
T ss_pred CEEEEEECCCCCCCCCC-----CHHHHHHHHHHHHHCC
T ss_conf 63799627886322456-----6789999998752033
No 353
>pfam03846 SulA Cell division inhibitor SulA.
Probab=28.60 E-value=33 Score=14.91 Aligned_cols=54 Identities=22% Similarity=0.386 Sum_probs=32.8
Q ss_pred HHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCC-----HHHHHHHCCCHHC
Q ss_conf 744778873899634657887886677750898770587236763-----3567753222010
Q gi|254780465|r 240 ALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEND-----TLVRMFDMGMYRP 297 (469)
Q Consensus 240 ~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~Nd-----iL~rf~~tG~y~~ 297 (469)
|+..+.|-+-+.-|- ....--.-+..|||++|++--...|. ...|.+.+|.|+-
T Consensus 55 Qlg~qSRWlLWltPq----qkLsr~WL~~sGLPl~Kv~ql~~~~~~~tv~aMeKAL~tGNySv 113 (119)
T pfam03846 55 QLGQQSRWQLWLTPQ----QKLSREWVQQSGLPLDKVMQLSQINPLHTVESMERALRTGNYSV 113 (119)
T ss_pred HHCCCCEEEEEECCH----HHHHHHHHHHCCCCHHHHHEECCCCHHHHHHHHHHHHHCCCCEE
T ss_conf 837354268886701----67669999982998136201056871638999999997099448
No 354
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=28.28 E-value=35 Score=14.73 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.9
Q ss_pred ECCCHHHHHHHHHHHH
Q ss_conf 1796588899999975
Q gi|254780465|r 190 VQSSFDDCQKIVKNLF 205 (469)
Q Consensus 190 v~G~FDDcq~~Vk~~f 205 (469)
++|+||+|..+||++.
T Consensus 46 iEg~~del~~~ik~~~ 61 (100)
T COG0011 46 IEGELDELMEAVKEAH 61 (100)
T ss_pred EEECHHHHHHHHHHHH
T ss_conf 9862999999999999
No 355
>pfam06606 consensus
Probab=28.22 E-value=24 Score=15.88 Aligned_cols=176 Identities=23% Similarity=0.332 Sum_probs=91.1
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHHCCCCCCCEEEE-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98999999998751578998999999999-863047667860477-2488254662138981206823888999999997
Q gi|254780465|r 50 SYQEIALFIFRLFIGQEIKSSKLRDIVNR-SYHCFRNAAVTPLIQ-LNANEFLLELFHGPTLSFKDIAMQFIAELMDHIL 127 (469)
Q Consensus 50 sy~e~a~~il~~f~~~~i~~~~l~~ii~~-ay~~f~~~~~~pl~~-l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l 127 (469)
.|+++|.+ |.++.+++.++.+-+++ ||.+||-..|+.+.+ .++..|
T Consensus 2 ~Y~~iAi~----F~~e~~d~~~I~~Wv~~FaYQGFDa~~vi~lv~e~gg~~W---------------------------- 49 (243)
T pfam06606 2 NYQEIAIE----FADQAIDEEEIREWVNEFAYQGFDARRVISLLKELGGLDW---------------------------- 49 (243)
T ss_pred CHHHHHHH----HHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCH----------------------------
T ss_conf 49999999----8661125899999999988737789999999999747457----------------------------
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 31798207997166540467999861667855999735776760332131134478708997179658889999997501
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSD 207 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D 207 (469)
++.-|+++||+-|-|+--+....-.. |+| ...|+.+-.-
T Consensus 50 ~eDvK~MIvL~LTRGNKp~kM~~kMS-----------~eG------------------------------k~~v~~Lv~~ 88 (243)
T pfam06606 50 EQDAKKMIVLSLTRGNKPSKMMKKMS-----------EEG------------------------------KAEVALLVAK 88 (243)
T ss_pred HHHHHHHHEEHHCCCCCHHHHHHHHC-----------HHH------------------------------HHHHHHHHHH
T ss_conf 89888783011205897689999848-----------877------------------------------8999999999
Q ss_pred HHHHCC------CCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCC-CCEEEEEC
Q ss_conf 543135------83113455654440110558999998744778873899634657887886677750898-77058723
Q gi|254780465|r 208 VFFCHS------VNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLP-IEKLIIAT 280 (469)
Q Consensus 208 ~~~~~~------~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLP-I~kli~At 280 (469)
-.+++. +.||-+ +.-|+.+-+|...++..|+.+. |.-=+.+++-|-+.|=-| .-+||--+
T Consensus 89 Y~Lk~gnPgR~dlTLSRv-aaA~agwTcqa~~~v~~~lpVt------------g~~Md~ls~~YPr~MMHpsFAGlID~~ 155 (243)
T pfam06606 89 YKLKEGNPGRDDLTLSRV-AAAFAGWTCQALPVLSESLPVT------------GTTMDALSGTYPRAMMHPSFAGLIDPS 155 (243)
T ss_pred HHCCCCCCCCCCCCHHHH-HHHHCCCEEEHHHHHHHHCCCC------------CCHHHHHCCCCCHHHHCCHHHCCCCCC
T ss_conf 812358988674309999-9985255000099998764877------------510765357773776071232227876
Q ss_pred CCCCHHHHHHHCCCHHCCCCCCCCCCCCCCC
Q ss_conf 6763356775322201023455656420013
Q gi|254780465|r 281 NENDTLVRMFDMGMYRPEIVMETTSPAMDIQ 311 (469)
Q Consensus 281 N~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~ 311 (469)
=.++.+....+....-.-.+.+|+-|++.=.
T Consensus 156 Lp~~~~~~i~dAH~Lfll~FSkTIN~slRg~ 186 (243)
T pfam06606 156 LPEDSFKAILDAHRLFLLEFSKTINPSLRGM 186 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
T ss_conf 8868999999998899999862168120378
No 356
>PRK00876 nadE NAD synthetase; Reviewed
Probab=28.13 E-value=42 Score=14.14 Aligned_cols=86 Identities=15% Similarity=0.252 Sum_probs=48.0
Q ss_pred HHHH-HHHHHCCCCCEEEEECCCCCHHHHHHHHHC----CCCCCEEEEECCCCCCCHHHH--CC-CEEECCCCEEEEEEC
Q ss_conf 9999-999731798207997166540467999861----667855999735776760332--13-113447870899717
Q gi|254780465|r 120 AELM-DHILEERDHYITIVGATSGDTGAAAIKAFA----GKKRINMYILFPEGRISVVQQ--KQ-MTTSEASNINVIAVQ 191 (469)
Q Consensus 120 ~~~~-~~~l~~~~~~~~il~ATSGDTGsAa~~a~~----~~~~i~v~vlyP~g~vS~~Q~--~q-mtt~~~~Nv~~i~v~ 191 (469)
..++ ++.++..+++. ++.+=||---||...+.. |.+++..++| |....++-.. .+ +....|-+-..+.|.
T Consensus 20 v~fir~~v~~~~~~kG-~VlGlSGGIDSAv~a~Lav~AlG~e~V~gl~M-P~~~s~~~s~~~a~~la~~lGi~~~~idI~ 97 (325)
T PRK00876 20 RAFIREQVLGTLKRRG-VVLGLSGGIDSSVTLALCVRALGKDRVLGLLM-PERDSSPDSLRLGRMLAESLGVEYVVEDIS 97 (325)
T ss_pred HHHHHHHHHHCCCCCE-EEEECCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 9999999985169867-99968768889999999999748551699978-865688778999999999819935998448
Q ss_pred ------CCHHHHHHHHHHHHCC
Q ss_conf ------9658889999997501
Q gi|254780465|r 192 ------SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 192 ------G~FDDcq~~Vk~~f~D 207 (469)
|.++.-+..+++++-+
T Consensus 98 ~~l~~~~~y~~~d~~i~~~~p~ 119 (325)
T PRK00876 98 PALEALGCYERRDEAIRRVVPE 119 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9998754313568888750333
No 357
>pfam09761 consensus
Probab=27.94 E-value=42 Score=14.12 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=14.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 75157899899999999986304
Q gi|254780465|r 61 LFIGQEIKSSKLRDIVNRSYHCF 83 (469)
Q Consensus 61 ~f~~~~i~~~~l~~ii~~ay~~f 83 (469)
.+.++++.+..+++++.++|.-|
T Consensus 86 eY~~~ei~d~i~~aVLk~~Y~mF 108 (454)
T pfam09761 86 EYIEAEIRDRILRAVLKQCYSMF 108 (454)
T ss_pred EECCCCHHHHHHHHHHHHHHHHH
T ss_conf 00366044789999999999999
No 358
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=27.93 E-value=42 Score=14.11 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=21.4
Q ss_pred HCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 317982079971665404679998616678559997
Q gi|254780465|r 128 EERDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 128 ~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
...+|++.|+++ |=.|-+|+.-.+ +.+.+|.|+
T Consensus 134 ~~tgkkVAVIGa--GPAGLsaA~~La-~~G~~VtVf 166 (560)
T PRK12771 134 PDTGKRVAVIGG--GPAGLSAAYQLR-RLGHAVTIF 166 (560)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHH-HCCCEEEEE
T ss_conf 778998999897--789999999999-769858996
No 359
>KOG1611 consensus
Probab=27.79 E-value=43 Score=14.10 Aligned_cols=67 Identities=19% Similarity=0.364 Sum_probs=39.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEE
Q ss_conf 81206823888999999997317982079971665404679998616678559997357767603321311344787089
Q gi|254780465|r 108 TLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINV 187 (469)
Q Consensus 108 T~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~ 187 (469)
|+|=+-+|+.++- .+++ .+.+.++.||-+|-..| -++.+.-+-...|||.
T Consensus 9 tGaNRGIGlgLVk----~llk--~~~i~~iiat~r~~e~a------------------------~~~l~~k~~~d~rvHi 58 (249)
T KOG1611 9 TGANRGIGLGLVK----ELLK--DKGIEVIIATARDPEKA------------------------ATELALKSKSDSRVHI 58 (249)
T ss_pred ECCCCCHHHHHHH----HHHC--CCCCEEEEEECCCHHHH------------------------HHHHHHHHCCCCCEEE
T ss_conf 6267621077889----9835--78847999844796776------------------------5787876325885279
Q ss_pred EEECCCHHH-HHHHHHHH
Q ss_conf 971796588-89999997
Q gi|254780465|r 188 IAVQSSFDD-CQKIVKNL 204 (469)
Q Consensus 188 i~v~G~FDD-cq~~Vk~~ 204 (469)
++++=+.|+ ..+.|+++
T Consensus 59 i~Ldvt~deS~~~~~~~V 76 (249)
T KOG1611 59 IQLDVTCDESIDNFVQEV 76 (249)
T ss_pred EEEECCCHHHHHHHHHHH
T ss_conf 987336577799999998
No 360
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=27.55 E-value=43 Score=14.07 Aligned_cols=62 Identities=16% Similarity=0.305 Sum_probs=38.9
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 997166540467999861667855999735776760332131134478708997179658889999997501
Q gi|254780465|r 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSD 207 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D 207 (469)
|=--+||-+|.|.++++..+ +-+|.+++=.+.+.+ ....++..+.|+.. ++....+++.+.+
T Consensus 20 IsN~SSGk~G~aiA~~~~~~-Ga~Vtli~g~~~~~p--------~~~~~~~~i~v~ta-~em~~~~~~~~~~ 81 (228)
T PRK06732 20 ITNHSTGQLGKIIAETFLQA-GHEVTLVTTKTAVKP--------EPHPNLSIIEIENV-DDLLATLKPLVPH 81 (228)
T ss_pred ECCCCHHHHHHHHHHHHHHC-CCEEEEEECCCCCCC--------CCCCCEEEEEECCH-HHHHHHHHHHCCC
T ss_conf 67678149999999999978-998999956775688--------98898589994589-9999999974789
No 361
>PRK06523 short chain dehydrogenase; Provisional
Probab=27.46 E-value=43 Score=14.06 Aligned_cols=67 Identities=13% Similarity=0.267 Sum_probs=43.6
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 179820799716654046799986166785599973577676033213113447870899717-9658889999997501
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
-++|.. +++..|+--|.|.+..|. ..+.+|++.. + + .....+.+++.+.+| .+.++|+++|+++...
T Consensus 7 L~gK~a-lITG~s~GIG~aia~~la-~~Ga~V~~~~---r-~------~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~ 74 (260)
T PRK06523 7 LAGKRA-LVTGGTKGIGAATVARFR-EAGARVVTTA---R-S------RPDDLPEGVEFVAADLTTAEGCAAVARAVLER 74 (260)
T ss_pred CCCCEE-EEECCCCHHHHHHHHHHH-HCCCEEEEEE---C-C------CCCCCCCCCEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 999989-994757699999999999-8799999994---8-8------40137986289983799999999999999997
No 362
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=27.25 E-value=44 Score=14.03 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCHHH
Q ss_conf 887886677750898770587236763356
Q gi|254780465|r 258 GDIFAGYMAKMMGLPIEKLIIATNENDTLV 287 (469)
Q Consensus 258 Gni~Ag~~Ak~MGLPI~kli~AtN~NdiL~ 287 (469)
.+-.|+|+|+++|-. +||.+|+..-+..
T Consensus 116 sDs~a~~~A~~l~a~--~li~~~~vdGiy~ 143 (203)
T cd04240 116 SDSIAAWLAKKLGAK--RLVIVTDVDGIYE 143 (203)
T ss_pred HHHHHHHHHHHCCCC--EEEEEECCCCCCC
T ss_conf 189999999975988--5899856775518
No 363
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=27.22 E-value=44 Score=14.03 Aligned_cols=55 Identities=25% Similarity=0.288 Sum_probs=34.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 20013401378899987097089999998752026510552022110001213421388999999999
Q gi|254780465|r 307 AMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKS 374 (469)
Q Consensus 307 sMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~ 374 (469)
|+|..++.|||.|. .+|.+++-.+.. +.|++. |+.-..++.+.| ||+|-..++..
T Consensus 20 ~vd~~~~~~y~~l~--------~Ki~~vFp~L~~-~~f~l~---wkDedgD~I~~S-SDeEL~~Al~~ 74 (87)
T cd06402 20 AIDEDVSTSYEYLV--------EKVAAVFPSLRG-KNFQLF---WKDEEGDLVAFS-SDEELVMALGS 74 (87)
T ss_pred ECCCCCCCCHHHHH--------HHHHHHCCCCCC-CCEEEE---EECCCCCEEEEE-CHHHHHHHHHH
T ss_conf 60798772689999--------999986826578-846999---975899989981-66999999862
No 364
>pfam04135 Nop10p Nucleolar RNA-binding protein, Nop10p family. Nop10p is a nucleolar protein that is specifically associated with H/ACA snoRNAs. It is essential for normal 18S rRNA production and rRNA pseudouridylation by the ribonucleoprotein particles containing H/ACA snoRNAs (H/ACA snoRNPs). Nop10p is probably necessary for the stability of these RNPs.
Probab=27.10 E-value=20 Score=16.30 Aligned_cols=12 Identities=33% Similarity=0.733 Sum_probs=9.1
Q ss_pred EEECCCCCCCHH
Q ss_conf 997188434988
Q gi|254780465|r 407 TLATAHPSKFPD 418 (469)
Q Consensus 407 vLATAHPaKFpe 418 (469)
....||||+|+.
T Consensus 26 ~t~~ahParFSP 37 (53)
T pfam04135 26 PTKSAHPARFSP 37 (53)
T ss_pred CCCCCCCCCCCC
T ss_conf 467678998897
No 365
>TIGR02128 G6PI_arch bifunctional phosphoglucose/phosphomannose isomerase; InterPro: IPR011857 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyzes the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals . Three classes of PMI have been defined . These bifunctional isomerases form a distinct phylogenetic cluster within the larger phosphoglucose isomerase (PGI) superfamily . They show relatively low sequence identity to other PGIs, but contain similar structural elements and show almost complete conservation of the catalytic residues in the active site, indicating they use a similar catalytic mechanism . The family appears to have originated in the archaea, with the bacterial proteins being acquired through horizontal transfer.; GO: 0004347 glucose-6-phosphate isomerase activity, 0004476 mannose-6-phosphate isomerase activity.
Probab=27.08 E-value=44 Score=14.01 Aligned_cols=157 Identities=21% Similarity=0.332 Sum_probs=90.4
Q ss_pred CEEEEE-CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHC--CCCCCEEEEECCCCCCCHHH
Q ss_conf 254662-1389812068238889999999973179820799716-6540467999861--66785599973577676033
Q gi|254780465|r 98 EFLLEL-FHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGAT-SGDTGAAAIKAFA--GKKRINMYILFPEGRISVVQ 173 (469)
Q Consensus 98 ~~vlEL-fHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~AT-SGDTGsAa~~a~~--~~~~i~v~vlyP~g~vS~~Q 173 (469)
.+.++. |.+|+..-||+.+ ++.. +++..+++.+ ||.| .=.++++. -+++.++++.==-|+.++
T Consensus 47 ~~~~~~~~~~Pvfvv~DY~~---p~~v-------~~~~~lIAvSYSGNT-~ETl~~~e~A~~~~~~~~aITSGG~L~e-- 113 (338)
T TIGR02128 47 ELLLEKSFEVPVFVVKDYRL---PAFV-------DGKTLLIAVSYSGNT-EETLSAVEEAKKKGAKVIAITSGGKLEE-- 113 (338)
T ss_pred HHHHHHCCCCCEEEECCCCC---CCCC-------CCCEEEEEEECCCCH-HHHHHHHHHHHHCCCCEEEEECCCHHHH--
T ss_conf 98653247888888707789---6988-------985179998617866-8999999999865795599944853886--
Q ss_pred HCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCCCC-CCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 21311344787089971796588899999975015431358311-34556544401105589999987447788738996
Q gi|254780465|r 174 QKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLS-GINSINWARIMAQIVYYFVSSIALGSPNRNISFSV 252 (469)
Q Consensus 174 ~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~-s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~V 252 (469)
|-. .+|+-++.|-+.|. .+..|. | .+||+ +.+.........-.++
T Consensus 114 ---~A~--e~g~~~i~iP~G~q----------------PR~a~pys--------fiPyl---~~~~~~~~~~~~g~d~-- 159 (338)
T TIGR02128 114 ---MAK--EEGLDVIKIPKGLQ----------------PRAALPYS--------FIPYL---LTALILMLIKPLGIDI-- 159 (338)
T ss_pred ---HCC--CCCCCEEEECCCCC----------------CCCCCCHH--------HHHHH---HHHHHHHHHCCCCCCH--
T ss_conf ---301--14875688288611----------------32104056--------89999---9999997621247424--
Q ss_pred ECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHH--CCCCCCCCC-CCCCCCCH
Q ss_conf 34657887886677750898770587236763356775322201--023455656-42001340
Q gi|254780465|r 253 PTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYR--PEIVMETTS-PAMDIQIP 313 (469)
Q Consensus 253 PtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~--~~~~~~T~S-psMDI~v~ 313 (469)
|+..+. .|--=++++-.+.+|+-+..-+.+-.|. +-++.-+.+ |-. .++
T Consensus 160 ------~~~~~~----~gd~~E~l~~~~~~~k~~~~~LA~~i~~G~riPvIy~~~G~~~--~iA 211 (338)
T TIGR02128 160 ------EEAERV----LGDLKERLIEDTEKLKALAKRLAEEIYNGYRIPVIYSSSGPTR--PIA 211 (338)
T ss_pred ------HHHHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH--HHH
T ss_conf ------366667----8887765320165235789999999867920518870788714--776
No 366
>PRK07806 short chain dehydrogenase; Provisional
Probab=27.07 E-value=44 Score=14.01 Aligned_cols=73 Identities=10% Similarity=0.196 Sum_probs=43.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--CCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHCC
Q ss_conf 8207997166540467999861667855999735776760332--13113447870899717-9658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQ--KQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~--~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~D 207 (469)
.|..+++..|.--|.|.+..|. ..+-+|++-|-.. ....++ .++.. .|.....+..| .+-++|+.+++++-..
T Consensus 6 gKvalVTGas~GIG~aiA~~la-~~Ga~Vvi~~~~~-~~~a~~~~~~i~~-~g~~a~~~~~Dvtd~~~v~~l~~~~~~~ 81 (248)
T PRK07806 6 GKIALVTGSSRGIGAEVAKYLA-GAGAHVVVNYRNK-AARAEKVVAEIRA-AGGRASAVGADLTDEASVAALMDAIRAE 81 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCC-HHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9889993788599999999999-8799899983895-6899999999996-1983999978999999999999999998
No 367
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=26.90 E-value=44 Score=13.99 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=5.7
Q ss_pred CCEEEEECCCCCCC
Q ss_conf 85599973577676
Q gi|254780465|r 157 RINMYILFPEGRIS 170 (469)
Q Consensus 157 ~i~v~vlyP~g~vS 170 (469)
+-+++++.|..-..
T Consensus 30 ~~~~lil~Pt~~L~ 43 (144)
T cd00046 30 GGQVLVLAPTRELA 43 (144)
T ss_pred CCEEEEECCHHHHH
T ss_conf 97699974679999
No 368
>PRK09074 consensus
Probab=26.88 E-value=44 Score=13.99 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=14.9
Q ss_pred EECC-CHHHHHHHHHHHHCCC----CCCEEEEECCCCCHHHHHHHCCC
Q ss_conf 6346-5788788667775089----87705872367633567753222
Q gi|254780465|r 252 VPTG-NFGDIFAGYMAKMMGL----PIEKLIIATNENDTLVRMFDMGM 294 (469)
Q Consensus 252 VPtG-NfGni~Ag~~Ak~MGL----PI~kli~AtN~NdiL~rf~~tG~ 294 (469)
||+| .=|-.-+-.+|+.+|+ ||+ -|-.+.||++-.+
T Consensus 365 I~vGpGRGSaAGSLVaY~LgIT~vDPi~-------y~LlFERFLNpeR 405 (1149)
T PRK09074 365 IPVGPGRGSGAGSLVAYALTITDLDPLR-------FSLLFERFLNPER 405 (1149)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCHH-------CCCCHHHHCCCCC
T ss_conf 8647887727889999982787658020-------4741887614445
No 369
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=26.71 E-value=44 Score=13.97 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=43.8
Q ss_pred EEECCCCCHHHHHHHCCCHHCCCCCCCCC-----CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCC
Q ss_conf 87236763356775322201023455656-----42001340137889998709708999999875202
Q gi|254780465|r 277 IIATNENDTLVRMFDMGMYRPEIVMETTS-----PAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLEN 340 (469)
Q Consensus 277 i~AtN~NdiL~rf~~tG~y~~~~~~~T~S-----psMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~ 340 (469)
|-=.+.+.+++..|-++.+..+.++..+. =.-||.-+||-+|+|-.+....+.......+.++.
T Consensus 26 vYLH~d~s~~tnvFC~~~Lc~e~vi~~l~~nfv~wgwDvt~~sN~~~fl~~~~~~~gs~as~t~r~~~~ 94 (136)
T cd02990 26 IYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKT 94 (136)
T ss_pred EEECCCCCCCHHHHHHHHHCHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHCHHHHHHHHHCCC
T ss_conf 996279864401778865040999999983655832015765678999999987506489999983652
No 370
>PRK08278 short chain dehydrogenase; Provisional
Probab=26.65 E-value=45 Score=13.96 Aligned_cols=73 Identities=11% Similarity=0.047 Sum_probs=43.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC-CH----H-H-HCCCEEECCCCEEEEEEC-CCHHHHHHHHHH
Q ss_conf 82079971665404679998616678559997357767-60----3-3-213113447870899717-965888999999
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI-SV----V-Q-QKQMTTSEASNINVIAVQ-SSFDDCQKIVKN 203 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v-S~----~-Q-~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~ 203 (469)
.|..+++..|+--|.|.+..|.. .+-+|++.+-...- .. + + ..+... .+.++..+.+| .+-++|+.+|++
T Consensus 6 gKvalVTGas~GIG~aiA~~la~-~Ga~Vvi~~r~~~~~~~l~~~~~~~a~e~~~-~g~~~~~~~~Dv~~~~~v~~~v~~ 83 (273)
T PRK08278 6 GKTLFITGASRGIGLAIALRAAR-DGANIVIAAKTAEPHPKLPGTIHTAAAEIEA-AGGQALPLVGDVRDEDQVAAAVAK 83 (273)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 99899948765999999999998-7998999967722213345489999999997-499089997117999999999999
Q ss_pred HHC
Q ss_conf 750
Q gi|254780465|r 204 LFS 206 (469)
Q Consensus 204 ~f~ 206 (469)
+..
T Consensus 84 ~~~ 86 (273)
T PRK08278 84 TVE 86 (273)
T ss_pred HHH
T ss_conf 999
No 371
>PRK01810 DNA polymerase IV; Validated
Probab=26.65 E-value=45 Score=13.96 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=4.6
Q ss_pred HHHHHHHHHHCC
Q ss_conf 999999998639
Q gi|254780465|r 369 NSVIKSVLEKSN 380 (469)
Q Consensus 369 ~~~Ik~~y~~~g 380 (469)
..+|-.+-++||
T Consensus 369 ~~aiD~In~rfG 380 (410)
T PRK01810 369 LAVIDQINDKYG 380 (410)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999998757
No 372
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=26.52 E-value=45 Score=13.95 Aligned_cols=164 Identities=19% Similarity=0.167 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCH
Q ss_conf 78998999999999863047667860477248825466213898120682388899999999731798207997166540
Q gi|254780465|r 65 QEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDT 144 (469)
Q Consensus 65 ~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDT 144 (469)
.||++++.++++.+-. -++-++. +..| +--|=|..-.=. +..+..-++..+..+++.+ |+.+-||-.
T Consensus 4 ~eItp~ea~~~~~~ga------vliDVRe--~~E~--~~GhIpgA~~ip--~~~le~~~~~~~pdkd~~i-vvyC~sG~R 70 (379)
T PRK08762 4 HEISPAQARARALQGA------VLIDVRQ--AHER--ASGQAEGALAIA--QGFLELQPATHLPDHDREI-VLICQSGKR 70 (379)
T ss_pred CCCCHHHHHHHHHCCC------EEEECCC--HHHH--HCCCCCCCEECC--HHHHHHHHHHCCCCCCCEE-EEECCCCHH
T ss_conf 4658999999987898------8998988--7899--578887888788--2445541330188999859-999999879
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHHHCCCC--CCCCCCC
Q ss_conf 46799986166785599973577676033213113447870899717965888999999750154313583--1134556
Q gi|254780465|r 145 GAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVN--LSGINSI 222 (469)
Q Consensus 145 GsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~~~~~~--l~s~NSI 222 (469)
++-|+...+..---+|..| .|++..-++.-+ +++--.-.-+-|+ |.+++. +
T Consensus 71 S~~Aa~~L~~~Gy~~V~~l--~GG~~aW~~aGl---------PvErp~~~~~~~~----------~~eRYsRqi------ 123 (379)
T PRK08762 71 SAHAAADLRELGYRRVASV--AGGTSAWRDAGL---------PLERPTLLTDEQD----------FLERYSRHL------ 123 (379)
T ss_pred HHHHHHHHHHCCCCCCEEC--CCCHHHHHHCCC---------CCCCCCCCCHHHH----------HHHHHHHEE------
T ss_conf 9999999997699660886--574999997799---------8555886881130----------344312011------
Q ss_pred CHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 5444011055899999874477887389963465788788667775089877058723
Q gi|254780465|r 223 NWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIAT 280 (469)
Q Consensus 223 N~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~At 280 (469)
+||++=. -.-.++... . ..+|=.|..|...|-|+|.- | |++|.++-
T Consensus 124 ----~lp~iG~--~GQ~kL~~a--~-VlivG~GGLGs~~a~yLA~a-G--VG~i~lvD 169 (379)
T PRK08762 124 ----RLPQVGE--EGQRRLARA--R-VLLIGAGGLGSPAAFYLAAA-G--VGHLRIAD 169 (379)
T ss_pred ----CCCCCCH--HHHHHHHHC--C-EEEECCCHHHHHHHHHHHHH-C--CCEEEEEE
T ss_conf ----5622699--999999739--7-89988875579999999983-7--97589762
No 373
>PTZ00117 malate dehydrogenase; Provisional
Probab=26.35 E-value=45 Score=13.93 Aligned_cols=203 Identities=19% Similarity=0.179 Sum_probs=86.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHH---CCCEEECCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 8207997166540467999861667855999735776-760332---131134478708997179658889999997501
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR-ISVVQQ---KQMTTSEASNINVIAVQSSFDDCQKIVKNLFSD 207 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~-vS~~Q~---~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D 207 (469)
+++.|++| |..|++++.+.... ++.=++||=... ..+-|. .+..+..+.+...++ .|++.||..
T Consensus 2 ~KV~IIGa--G~VG~~~A~~l~~~-~~~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~-~~dy~~~~d-------- 69 (313)
T PTZ00117 2 KKISIIGS--GQIGAIVGLLLLQE-NLGDVYLYDVIEGVPQGKALDLKHFSTIIGVNANILG-TNNYEDIKD-------- 69 (313)
T ss_pred CEEEEECC--CHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEE-CCCHHHHCC--------
T ss_conf 78999897--98999999999708-9987999958898308899887724203689857983-799999689--------
Q ss_pred HHHHCCCCCCCCCCCCHHHCCCCHHH--------HHHH-HHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 54313583113455654440110558--------9999-98744778873899634657887886677750898770587
Q gi|254780465|r 208 VFFCHSVNLSGINSINWARIMAQIVY--------YFVS-SIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLII 278 (469)
Q Consensus 208 ~~~~~~~~l~s~NSIN~~Ril~Q~vy--------Yf~a-~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli~ 278 (469)
.+ +-+.++. ..|--+|.=- -+-. .-++.+.... .+.+=..|==|+.+.++.|..|+|=+|++-
T Consensus 70 aD----iVVitAG---~~rk~g~tR~dLl~~N~~I~~~i~~~i~~~~p~-aiiivvtNPvDimt~v~~k~sg~p~~rViG 141 (313)
T PTZ00117 70 SD----VIVITAG---VQRKEGMTREDLIGVNGKIMKSVAESVKKHCPN-AFVICVSNPLDIMVNVFKKKSGLPHEKICG 141 (313)
T ss_pred CC----EEEECCC---CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHCCCHHHEEE
T ss_conf 99----9998989---989979988999987677788888776235898-089978994899999999862898677670
Q ss_pred ECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHH-----
Q ss_conf 236763356775322201023455656420013401378899987097089999998752026510552022110-----
Q gi|254780465|r 279 ATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQK----- 353 (469)
Q Consensus 279 AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~----- 353 (469)
... ...++-|.++|-+..+-++..|..++ +.+.|.-.++......
T Consensus 142 ~gt----------------------------~LDsaR~r~~la~~l~v~~~~V~~~V--iGeHGds~vp~wS~~~v~G~p 191 (313)
T PTZ00117 142 MAG----------------------------ILDTSRFRCLLARKLKVKPSDVSAVV--LGGHGDLMVPLTRYVSIGGIP 191 (313)
T ss_pred CCC----------------------------EEEHHHHHHHHHHHHCCCCCCEEEEE--EECCCCCEEEEEEECCCCCCC
T ss_conf 044----------------------------02088999999999689922137778--605689478645202658961
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHCCCEEC
Q ss_conf 0012134213889999999999986395983
Q gi|254780465|r 354 MSLSFSAKRASMEDVNSVIKSVLEKSNYLVD 384 (469)
Q Consensus 354 l~~~f~s~svsDeet~~~Ik~~y~~~gyiiD 384 (469)
+.+...-...++++..+.++++-..-..++.
T Consensus 192 l~~~~~~~~~~~~~~~ei~~~~~~~g~~ii~ 222 (313)
T PTZ00117 192 LSEFVKKNKISHSEINEIIKKTRFMGGEIIK 222 (313)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8998542687889999999998516623888
No 374
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.33 E-value=45 Score=13.92 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=55.3
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEE
Q ss_conf 46621389812068238889999999973179820799716654046799986166785599973577676033213113
Q gi|254780465|r 100 LLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTT 179 (469)
Q Consensus 100 vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt 179 (469)
-|++-||-|.+== .+.|++++...-+.+.++.-+++-||=+ +|.++-..+ .|..+=.++ ..-+.-++.+.+
T Consensus 46 ~lpi~~gqtis~P----~~vA~m~~~L~~~~g~~VLEIGtGsGY~-aAvla~l~~--~V~siEr~~--~L~~~A~~~L~~ 116 (209)
T COG2518 46 ALPIGCGQTISAP----HMVARMLQLLELKPGDRVLEIGTGSGYQ-AAVLARLVG--RVVSIERIE--ELAEQARRNLET 116 (209)
T ss_pred CCCCCCCCEECCC----HHHHHHHHHHCCCCCCEEEEECCCCHHH-HHHHHHHHC--EEEEEEECH--HHHHHHHHHHHH
T ss_conf 6447899350574----7999999974899998688877783099-999999748--499999719--999999999997
Q ss_pred ECCCCEEEEEECCC
Q ss_conf 44787089971796
Q gi|254780465|r 180 SEASNINVIAVQSS 193 (469)
Q Consensus 180 ~~~~Nv~~i~v~G~ 193 (469)
..-.||+++.=||+
T Consensus 117 lg~~nV~v~~gDG~ 130 (209)
T COG2518 117 LGYENVTVRHGDGS 130 (209)
T ss_pred CCCCCEEEEECCCC
T ss_conf 69873499978855
No 375
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.24 E-value=45 Score=13.91 Aligned_cols=32 Identities=25% Similarity=0.267 Sum_probs=27.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCC
Q ss_conf 2079971665404679998616678559997357
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPE 166 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~ 166 (469)
++.|++| |..|++.+.......-++=++||=-
T Consensus 2 KI~IIGa--G~VG~~~A~~l~~~~l~~el~L~Di 33 (308)
T cd05292 2 KVAIVGA--GFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 7999994--8889999999986799887999918
No 376
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=25.96 E-value=23 Score=15.89 Aligned_cols=34 Identities=26% Similarity=0.190 Sum_probs=27.1
Q ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCC
Q ss_conf 7886677750898770587236763356775322201023
Q gi|254780465|r 260 IFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299 (469)
Q Consensus 260 i~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~ 299 (469)
.+|-.+||+.|+|= .-.|.+|+++-+.|.-.+..
T Consensus 23 ~tA~~lak~lg~~K------k~vN~~LY~L~k~g~v~~~~ 56 (68)
T smart00550 23 STALQLAKNLGLPK------KEVNRVLYSLEKKGKVCKQG 56 (68)
T ss_pred CHHHHHHHHHCCCH------HHHHHHHHHHHHCCCEECCC
T ss_conf 03999999949989------99999999999748831069
No 377
>cd00424 Pol_Y Y-family of DNA polymerases. Pol_Y's can transverse replication-blocking DNA lesions, such as cyclobutane pyrimidine dimers resulting from UV damage, at the cost of an elevated error rate. The Y-family has no 3'-5' exonuclease activity. In addition to possessing a topology akin to a right hand, with "thumb", "fingers" and "palm" motifs, like polymerases from the A-, B-, C- and X-families, the Y-family has a unique "little finger" motif. Expression of Y-family polymerases is often induced by DNA damage. These polymerases are phylogenetically unrelated to classical DNA polymerases.
Probab=25.92 E-value=35 Score=14.70 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=11.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 134213889999999999986
Q gi|254780465|r 358 FSAKRASMEDVNSVIKSVLEK 378 (469)
Q Consensus 358 f~s~svsDeet~~~Ik~~y~~ 378 (469)
|.....+.+++...++..-++
T Consensus 247 f~~~~~~~~~i~~~l~~l~~~ 267 (341)
T cd00424 247 LGRNSRNRKEVKNILRKLLEK 267 (341)
T ss_pred CCCCCCCHHHHHHHHHHHHHH
T ss_conf 899899999999999999999
No 378
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=25.87 E-value=46 Score=13.87 Aligned_cols=19 Identities=11% Similarity=0.240 Sum_probs=11.6
Q ss_pred CCCHHHHHHHHHHHHHHCC
Q ss_conf 8998999999999863047
Q gi|254780465|r 66 EIKSSKLRDIVNRSYHCFR 84 (469)
Q Consensus 66 ~i~~~~l~~ii~~ay~~f~ 84 (469)
--+.+++.+++.+||..-.
T Consensus 129 v~~~~~ip~~i~~Af~~A~ 147 (550)
T COG0028 129 VRSPEDIPEVVARAFRIAL 147 (550)
T ss_pred ECCHHHHHHHHHHHHHHHH
T ss_conf 6899999999999999985
No 379
>TIGR00832 acr3 arsenical-resistance protein; InterPro: IPR004706 The arsenical-resistance protein ACR3 is an integral membrane protein involved in resistance to arsenic compounds. This family also includes several bacterial hypothetical proteins.; GO: 0016021 integral to membrane.
Probab=25.79 E-value=26 Score=15.56 Aligned_cols=55 Identities=22% Similarity=0.225 Sum_probs=36.6
Q ss_pred HHHHHHHHCCCC--CCEEEEECCCCCHHHHHHHCCCHHCCCCCC-CCCCCCCCCCHHHHHH
Q ss_conf 886677750898--770587236763356775322201023455-6564200134013788
Q gi|254780465|r 261 FAGYMAKMMGLP--IEKLIIATNENDTLVRMFDMGMYRPEIVME-TTSPAMDIQIPSNFER 318 (469)
Q Consensus 261 ~Ag~~Ak~MGLP--I~kli~AtN~NdiL~rf~~tG~y~~~~~~~-T~SpsMDI~v~SNfER 318 (469)
.+-++|++.|++ =.+--|++.+.-.|.|.+..- +-+..++ |.+-|+ |+-|.|||=
T Consensus 281 ~~y~L~~~l~~~rsdtqrecscdqelllkrvwGrk--sceasy~~~~~~af-t~aSN~FEL 338 (375)
T TIGR00832 281 LTYVLAKKLGLSRSDTQRECSCDQELLLKRVWGRK--SCEASYSITAPAAF-TGASNNFEL 338 (375)
T ss_pred HHHHHHHHHCCCCCCCCHHHCHHHHHHHHHHHCCC--CCCCCHHHHHHHHH-HHCCCHHHH
T ss_conf 99999987189822120010103788888761330--00020777888998-732611999
No 380
>pfam02097 Filo_VP35 Filoviridae VP35.
Probab=25.74 E-value=24 Score=15.81 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=15.5
Q ss_pred CCEEEEECCCCCH--HHHHHHHHCCCCC
Q ss_conf 8207997166540--4679998616678
Q gi|254780465|r 132 HYITIVGATSGDT--GAAAIKAFAGKKR 157 (469)
Q Consensus 132 ~~~~il~ATSGDT--GsAa~~a~~~~~~ 157 (469)
.++-.||-|+|-+ -+||.+|+++-.+
T Consensus 121 AKYDlLVmtTGRaTatAAAteAYw~EHg 148 (321)
T pfam02097 121 AKYDLLVMTTGRATATAAATDAYWNEHG 148 (321)
T ss_pred HHHCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7524577742765530788899998649
No 381
>PRK10595 SOS cell division inhibitor; Provisional
Probab=25.70 E-value=35 Score=14.73 Aligned_cols=34 Identities=21% Similarity=0.491 Sum_probs=21.4
Q ss_pred HHHHHHCCCCCCEEEEECCCC-----CHHHHHHHCCCHHC
Q ss_conf 667775089877058723676-----33567753222010
Q gi|254780465|r 263 GYMAKMMGLPIEKLIIATNEN-----DTLVRMFDMGMYRP 297 (469)
Q Consensus 263 g~~Ak~MGLPI~kli~AtN~N-----diL~rf~~tG~y~~ 297 (469)
-|+ +..|||++|++--+..| |...|.+.+|.|+-
T Consensus 74 ~Wl-~~sGLPl~KvmQl~~~~p~~Tv~aMekAL~sGnySv 112 (167)
T PRK10595 74 EWV-QSSGLPLTKVMQISQLSPCHTVESMERALRTGNYSV 112 (167)
T ss_pred HHH-HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 999-973997257420114680527999999985498348
No 382
>pfam00106 adh_short short chain dehydrogenase. This family contains a wide variety of dehydrogenases.
Probab=25.66 E-value=46 Score=13.84 Aligned_cols=71 Identities=13% Similarity=0.157 Sum_probs=42.7
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH-HHHC-CCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 7997166540467999861667855999735776760-3321-3113447870899717-965888999999750
Q gi|254780465|r 135 TIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV-VQQK-QMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 135 ~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~-~Q~~-qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.+++..|+--|.|.+..|... +-+++++.=...-++ .++. +-....+..++.+.+| .+.|+++++++++..
T Consensus 3 ~lITGas~GIG~aia~~la~~-Ga~~vv~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~ 76 (167)
T pfam00106 3 VLITGGTGGLGLALARWLAAE-GARHLVLVSRRGDAPGAAELVAELEALGAEVTVAACDVADRDALAALLAALPA 76 (167)
T ss_pred EEEECCCCHHHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999897878999999999987-99489996599676899999999995598599998469999999999999999
No 383
>TIGR02627 rhamnulo_kin rhamnulokinase; InterPro: IPR013449 Rhamnulokinase (2.7.1.5 from EC) is an enzyme that catalyzes the second step in rhamnose catabolism.; GO: 0008993 rhamnulokinase activity, 0019301 rhamnose catabolic process.
Probab=25.65 E-value=27 Score=15.51 Aligned_cols=32 Identities=19% Similarity=0.168 Sum_probs=21.9
Q ss_pred HHHHCCCCCEEEEECCCCCHHHHHHHHHCCCC
Q ss_conf 99731798207997166540467999861667
Q gi|254780465|r 125 HILEERDHYITIVGATSGDTGAAAIKAFAGKK 156 (469)
Q Consensus 125 ~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~ 156 (469)
+.-.-..+++.|+.-.|=||+||++.+=..-+
T Consensus 218 ~~~~~~~~~~pV~~VAtHDTASAVva~P~~~~ 249 (460)
T TIGR02627 218 LWEELDGDQVPVVAVATHDTASAVVAAPLQDE 249 (460)
T ss_pred HHHCCCCCCCCEEEECCCCCCCCEEECCCCCC
T ss_conf 77315797223363066762202032576768
No 384
>TIGR00461 gcvP glycine dehydrogenase; InterPro: IPR003437 This family consists of glycine cleavage system P-proteins (1.4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T . The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0006544 glycine metabolic process, 0005961 glycine dehydrogenase complex (decarboxylating).
Probab=25.60 E-value=12 Score=17.83 Aligned_cols=17 Identities=35% Similarity=0.433 Sum_probs=10.6
Q ss_pred EEECCCCCHHHHHHHHH
Q ss_conf 99716654046799986
Q gi|254780465|r 136 IVGATSGDTGAAAIKAF 152 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~ 152 (469)
|--|+==|-|-||+||.
T Consensus 130 ~AnASLLDEgTAAaEAM 146 (965)
T TIGR00461 130 VANASLLDEGTAAAEAM 146 (965)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 65453321788999999
No 385
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=25.50 E-value=47 Score=13.82 Aligned_cols=23 Identities=26% Similarity=0.263 Sum_probs=18.4
Q ss_pred CCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 787089971796588899999975
Q gi|254780465|r 182 ASNINVIAVQSSFDDCQKIVKNLF 205 (469)
Q Consensus 182 ~~Nv~~i~v~G~FDDcq~~Vk~~f 205 (469)
.+|| .+++-|--=|++.+|+.+-
T Consensus 67 ~~~i-g~a~sGl~~D~~~lv~~~r 89 (212)
T cd03751 67 DRHI-GIAVAGLLADGRHLVSRAR 89 (212)
T ss_pred CCCE-EEEEEECCHHHHHHHHHHH
T ss_conf 4882-7999857574899999999
No 386
>PRK02551 hypothetical protein; Provisional
Probab=25.38 E-value=47 Score=13.81 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=8.9
Q ss_pred EEECC--CHHHHHH---HHHHHHCCCC
Q ss_conf 96346--5788788---6677750898
Q gi|254780465|r 251 SVPTG--NFGDIFA---GYMAKMMGLP 272 (469)
Q Consensus 251 ~VPtG--NfGni~A---g~~Ak~MGLP 272 (469)
+|-|| |||+.|+ --+|+|.+.|
T Consensus 99 VigsGN~NFg~~f~~ag~~ia~k~~vP 125 (154)
T PRK02551 99 IIGSGNRNFNNQYCLTAKQYAKRFGFP 125 (154)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 984067837899999999999972997
No 387
>PRK05967 cystathionine beta-lyase; Provisional
Probab=25.11 E-value=47 Score=13.77 Aligned_cols=14 Identities=7% Similarity=0.059 Sum_probs=7.5
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 70899999987520
Q gi|254780465|r 326 RNSLLVKEAFYSLE 339 (469)
Q Consensus 326 ~d~~~v~~~m~~l~ 339 (469)
.|+.++.+++++-.
T Consensus 268 ~nA~~lA~~L~~hp 281 (392)
T PRK05967 268 KSALEIARWLEGRP 281 (392)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 98999999997199
No 388
>KOG1759 consensus
Probab=24.90 E-value=48 Score=13.75 Aligned_cols=32 Identities=28% Similarity=0.549 Sum_probs=24.4
Q ss_pred EEECCCHHHHHHHHHHHHCCCCCCEEEEECCCC
Q ss_conf 963465788788667775089877058723676
Q gi|254780465|r 251 SVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEN 283 (469)
Q Consensus 251 ~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~N 283 (469)
.||+| |=--..--+||-||.|=+++.+--..+
T Consensus 14 ~V~~~-fe~elt~~lAkimgkP~~~i~V~l~~~ 45 (115)
T KOG1759 14 KVPDG-FEKELTKALAKIMGKPEDYIMVELAGG 45 (115)
T ss_pred CCCCC-HHHHHHHHHHHHHCCCHHHEEEEECCC
T ss_conf 67833-999999999999579756589996489
No 389
>COG3429 Glucose-6-P dehydrogenase subunit [Carbohydrate transport and metabolism]
Probab=24.75 E-value=37 Score=14.49 Aligned_cols=55 Identities=18% Similarity=0.388 Sum_probs=30.9
Q ss_pred CCCCCHHHCCCCHHHHHHHHHHHCC-C-----CCCEEEEEECCCHHH-----HHHHHHHHHCCC-CCCEEE
Q ss_conf 4556544401105589999987447-7-----887389963465788-----788667775089-877058
Q gi|254780465|r 219 INSINWARIMAQIVYYFVSSIALGS-P-----NRNISFSVPTGNFGD-----IFAGYMAKMMGL-PIEKLI 277 (469)
Q Consensus 219 ~NSIN~~Ril~Q~vyYf~a~~~~~~-~-----~~~i~f~VPtGNfGn-----i~Ag~~Ak~MGL-PI~kli 277 (469)
.--.||.|+-. +=-...+..+ + .++|.-+-=+|-=|| +||||+|.+.+- |+.++.
T Consensus 157 daDL~WsRla~----WreLlAsa~D~P~rr~a~~~Id~v~v~y~kgn~a~allyaGWlAsRL~wtPv~r~~ 223 (314)
T COG3429 157 DADLAWSRLAY----WRELLASAFDAPPRRQAHEEIDSVTVSYEKGNPALALLYAGWLASRLQWTPVRRLT 223 (314)
T ss_pred CCCCCHHHHHH----HHHHHHHHCCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 55412778689----99999985379933442665023787246788389999989999871677613321
No 390
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=24.69 E-value=48 Score=13.72 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=5.8
Q ss_pred CCCCCCCCCCCCH
Q ss_conf 5565642001340
Q gi|254780465|r 301 METTSPAMDIQIP 313 (469)
Q Consensus 301 ~~T~SpsMDI~v~ 313 (469)
.+-.-||+|+..|
T Consensus 338 ~~g~yPAIDvl~S 350 (435)
T PRK07721 338 NKGQFPAVNVLKS 350 (435)
T ss_pred HCCCCCCCCCCCC
T ss_conf 6699998088616
No 391
>pfam02149 KA1 Kinase associated domain 1.
Probab=24.66 E-value=24 Score=15.82 Aligned_cols=19 Identities=37% Similarity=0.824 Sum_probs=15.1
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 1389812068238889999
Q gi|254780465|r 104 FHGPTLSFKDIAMQFIAEL 122 (469)
Q Consensus 104 fHGPT~aFKD~a~q~l~~~ 122 (469)
--|||..|||++-.++..+
T Consensus 26 i~G~~w~yk~l~~~il~el 44 (46)
T pfam02149 26 LSGPQWQYKDLAAKILSEL 44 (46)
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 1488257999999999970
No 392
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=24.64 E-value=48 Score=13.72 Aligned_cols=38 Identities=5% Similarity=0.093 Sum_probs=14.5
Q ss_pred CCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHH
Q ss_conf 6785599973577676033213113447870899717965888
Q gi|254780465|r 155 KKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDC 197 (469)
Q Consensus 155 ~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDc 197 (469)
..+|.++..=-.+ ...-|-.+|++. .++++ .++ +|++.
T Consensus 138 ~~GV~ifaVGVG~-~~~~eL~~IAs~-p~~~~--~~~-~f~~L 175 (186)
T cd01480 138 HLGIKIFFVAVGS-QNEEPLSRIACD-GKSAL--YRE-NFAEL 175 (186)
T ss_pred HCCCEEEEEEECC-CCHHHHHHHHCC-CCCEE--EEC-CHHHH
T ss_conf 8798999999474-887999998589-97389--736-89987
No 393
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=24.60 E-value=48 Score=13.71 Aligned_cols=82 Identities=21% Similarity=0.293 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCC-CEEEEECCCCCCCHHHHCCCEEECC
Q ss_conf 138981206823888999999997317982079971665404679998616678-5599973577676033213113447
Q gi|254780465|r 104 FHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSEA 182 (469)
Q Consensus 104 fHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~-i~v~vlyP~g~vS~~Q~~qmtt~~~ 182 (469)
=||-|.+ +-.+.+++++..--+.+.++..+++.||=. +|.++-.-+..+ +..+=.+| ...+.-++-+....-
T Consensus 54 g~g~tis----~P~~~a~ml~~L~l~~~~~VLeIGtGsGY~-tAlla~lvg~~g~V~siE~~~--~l~~~A~~~l~~~~~ 126 (214)
T PRK13942 54 GYGQTIS----AIHMVAIMCELLDLDEGQKVLEIGTGSGYH-AAVVAEIVGKSGKVTTIERIP--ELAEKAKKNLKKLGY 126 (214)
T ss_pred CCCCEEC----HHHHHHHHHHHHCCCCCCEEEEECCCCCHH-HHHHHHHHCCCCCEEEEECCH--HHHHHHHHHHHHHCC
T ss_conf 9997887----499999999972799999799967995299-999999747678579997179--999999999986376
Q ss_pred CCEEEEEECC
Q ss_conf 8708997179
Q gi|254780465|r 183 SNINVIAVQS 192 (469)
Q Consensus 183 ~Nv~~i~v~G 192 (469)
+||..+.-+|
T Consensus 127 ~nv~~~~gdg 136 (214)
T PRK13942 127 ENVEVILGDG 136 (214)
T ss_pred CCEEEEECCC
T ss_conf 8758985675
No 394
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=24.42 E-value=49 Score=13.69 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=18.8
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHH
Q ss_conf 662138981206823888999999
Q gi|254780465|r 101 LELFHGPTLSFKDIAMQFIAELMD 124 (469)
Q Consensus 101 lELfHGPT~aFKD~a~q~l~~~~~ 124 (469)
.-|||||.+.-|--++..+++-+.
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 100379999978999999999965
No 395
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1; InterPro: IPR004403 These proteins are translation factors that have been characterised in eukaryotes as the non-GTP-binding subunit of a cytosolic heterodimer that acts as a translation release factor for all three stop codons. Members of this orthologous family are found in Eukarya and Archaea. The name used should be eRF1 for the Archaea and aRF1 for the Eukarya. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=24.34 E-value=38 Score=14.42 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=7.5
Q ss_pred CCEEEEECCCCCCCCCCCHHH
Q ss_conf 825466213898120682388
Q gi|254780465|r 97 NEFLLELFHGPTLSFKDIAMQ 117 (469)
Q Consensus 97 ~~~vlELfHGPT~aFKD~a~q 117 (469)
++-+.-|+==|-.--=|++-+
T Consensus 28 GTeLiSLyIPP~~~I~dv~~~ 48 (425)
T TIGR00108 28 GTELISLYIPPDRQISDVAKH 48 (425)
T ss_pred CCEEEEEEECCCCCCHHHHHH
T ss_conf 724789986788951178888
No 396
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=24.24 E-value=49 Score=13.67 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=14.4
Q ss_pred EEEEEECCCHHHHHH-HHHHHHCCCCC
Q ss_conf 389963465788788-66777508987
Q gi|254780465|r 248 ISFSVPTGNFGDIFA-GYMAKMMGLPI 273 (469)
Q Consensus 248 i~f~VPtGNfGni~A-g~~Ak~MGLPI 273 (469)
+-+.+-++-|+.+.+ .-++...||||
T Consensus 241 vMv~~~~~G~sal~~lr~~~~d~~l~i 267 (412)
T TIGR03326 241 VMVDVVVCGWSALQYIRELTEDLGLAI 267 (412)
T ss_pred EEECCCCCCCHHHHHHHHHHHHCCCEE
T ss_conf 974363246359999998622349779
No 397
>PRK06180 short chain dehydrogenase; Provisional
Probab=24.18 E-value=49 Score=13.66 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=43.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 820799716654046799986166785599973577676033213113447870899717-965888999999750
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.|..+++..|.--|.|.+..|... +-+|++..=. ...+++ +....+.+++.+.+| .+.++++++++++..
T Consensus 4 ~KvvlITGassGIG~aiA~~l~~~-G~~Vi~~~R~--~~~l~~--l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~ 74 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA-GHRVVGTVRS--AAARRD--FEALHPGRALARVLDVTDFDAIDGVVADAEA 74 (277)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHC-CCEEEEEECC--HHHHHH--HHHHCCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 988999178739999999999987-9999999899--999999--9986799579999837999999999999999
No 398
>PRK08303 short chain dehydrogenase; Provisional
Probab=24.09 E-value=50 Score=13.65 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=43.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC--CCCHHH------H-CCCEEECCCCEEEEEEC-CCHHHHHH
Q ss_conf 79820799716654046799986166785599973577--676033------2-13113447870899717-96588899
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG--RISVVQ------Q-KQMTTSEASNINVIAVQ-SSFDDCQK 199 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g--~vS~~Q------~-~qmtt~~~~Nv~~i~v~-G~FDDcq~ 199 (469)
++|...|-+| |.--|.|.+..|. ..+-+|++.+=.. .-++.. + .......|..+..+.+| .+-++++.
T Consensus 7 ~GKvAlVTGa-srGIGraiA~~LA-~~GA~V~i~~r~~~~~~~~~~~~e~l~e~a~~i~~~Gg~~~~v~~Dvsd~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGA-TRGAGRGIAVELG-AAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHH-HCCCEEEEEECCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 9998999088-7589999999999-8799899982761100000120679999999999759908999756899999999
Q ss_pred HHHHHHC
Q ss_conf 9999750
Q gi|254780465|r 200 IVKNLFS 206 (469)
Q Consensus 200 ~Vk~~f~ 206 (469)
+|.++..
T Consensus 85 ~v~~~~~ 91 (305)
T PRK08303 85 LVERIDR 91 (305)
T ss_pred HHHHHHH
T ss_conf 9999999
No 399
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=23.88 E-value=50 Score=13.62 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=34.5
Q ss_pred CCCEEEEECC-CCCH--HHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC
Q ss_conf 9820799716-6540--46799986166785599973577676033213113447870899717
Q gi|254780465|r 131 DHYITIVGAT-SGDT--GAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ 191 (469)
Q Consensus 131 ~~~~~il~AT-SGDT--GsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~ 191 (469)
.++..|++.| ||-+ -+--++.....++..++||=|||.=....+ ...+++|.++..+
T Consensus 23 ~rH~aIlg~TGsGKS~tv~vLl~~l~~~~~~~vlVfDpHgEY~~~~~----~~~~~~v~v~~~~ 82 (218)
T pfam01935 23 SRHFAILGSTGSGKSNTVAVLLEELLEKKGATVLIFDPHGEYGWLLE----DLGPGKVNVITPD 82 (218)
T ss_pred HHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHC----CCCCCCEEEECCC
T ss_conf 42147872699976999999999998547997899828863632321----2478746997388
No 400
>pfam08659 KR KR domain. This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=23.85 E-value=50 Score=13.62 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=42.0
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHC-CCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 799716654046799986166785599973577-67603321-3113447870899717-965888999999750
Q gi|254780465|r 135 TIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQK-QMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 135 ~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~-qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.+++..|+--|.|.+..+...-...+++..-.. ...+.++. +-....+.+++.+.+| .+.++++.++.++..
T Consensus 3 vlITGas~GIG~aia~~la~~Ga~~vvl~~r~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~ 77 (181)
T pfam08659 3 YLVTGGLGGLGLELARWLAERGARHLVLLSRSGAPDPEAEALLAELEARGAEVTVVACDVSDRDAVAALLAEIRA 77 (181)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999687878999999999987997899986897662999999999996599699997568999999988865798
No 401
>pfam02503 PP_kinase Polyphosphate kinase. Polyphosphate kinase (Ppk) catalyses the formation of polyphosphate from ATP, with chain lengths of up to a thousand or more orthophosphate molecules.
Probab=23.64 E-value=19 Score=16.57 Aligned_cols=114 Identities=13% Similarity=0.203 Sum_probs=74.2
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEE-----CCCHHHHHHHHHHHHCCHH------HHCCCCCCCCC
Q ss_conf 616678559997357767603321311344787089971-----7965888999999750154------31358311345
Q gi|254780465|r 152 FAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAV-----QSSFDDCQKIVKNLFSDVF------FCHSVNLSGIN 220 (469)
Q Consensus 152 ~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v-----~G~FDDcq~~Vk~~f~D~~------~~~~~~l~s~N 220 (469)
|.....-++++.||...-+++=+---.+..+++|..|.+ .++.-=.+.|++.+=+-++ ++. ++-=.|
T Consensus 328 F~~I~~~DiLlhhPY~SF~~vv~fl~~AA~DP~V~aIK~TLYR~a~~S~Iv~aLi~AA~nGK~VtvlVELkA--RFDEe~ 405 (678)
T pfam02503 328 FDAIRKKDILLHHPYESFDPVVDFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKA--RFDEEN 405 (678)
T ss_pred HHHHHHCCEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECC--CCCHHH
T ss_conf 999850696884776561279999999837998537877898527988899999999982988999999733--406788
Q ss_pred CCCHHHCC----CCHHHHHHHHHHH-------CCCCCCE--EEEEECCCHHHHHHHHHHH
Q ss_conf 56544401----1055899999874-------4778873--8996346578878866777
Q gi|254780465|r 221 SINWARIM----AQIVYYFVSSIAL-------GSPNRNI--SFSVPTGNFGDIFAGYMAK 267 (469)
Q Consensus 221 SIN~~Ril----~Q~vyYf~a~~~~-------~~~~~~i--~f~VPtGNfGni~Ag~~Ak 267 (469)
-|.|+|-| .|++|-+-.+.-- .+.+..+ ..-+=||||-..||-.|.-
T Consensus 406 NI~wA~~Le~aGv~ViyG~~glKvHaK~~LI~Rre~~~~~~Y~higTGNyn~~TA~~YtD 465 (678)
T pfam02503 406 NIRWARRLEEAGVHVIYGVVGLKTHAKLALVVRREGGGLRRYVHLGTGNYNEKTARLYTD 465 (678)
T ss_pred HHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHEEC
T ss_conf 899999998599299917888500578999999707968999998688859555545540
No 402
>cd06528 RNAP_A'' A'' subunit of Archaeal RNA Polymerase (RNAP). Archaeal RNA polymerase (RNAP), like bacterial RNAP, is a large multi-subunit complex responsible for the synthesis of all RNAs in the cell. The relative positioning of the RNAP core is highly conserved between archaeal RNAP and the three classes of eukaryotic RNAPs. In archaea, the largest subunit is split into two polypeptides, A' and A'', which are encoded by separate genes in an operon. Sequence alignments reveal that the archaeal A'' subunit corresponds to the C-terminal one-third of the RNAPII largest subunit (Rpb1). In subunit A'', several loops in the jaw domain are shorter. The RNAPII Rpb1 interacts with the second-largest subunit (Rpb2) to form the DNA entry and RNA exit channels in addition to the catalytic center of RNA synthesis.
Probab=23.50 E-value=51 Score=13.57 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHCCCEECCC
Q ss_conf 999999999998639598383
Q gi|254780465|r 366 EDVNSVIKSVLEKSNYLVDPH 386 (469)
Q Consensus 366 eet~~~Ik~~y~~~gyiiDPH 386 (469)
+-..+.|+.+|..+|.-+|++
T Consensus 262 ~~lv~Ei~~v~~~qGv~In~r 282 (363)
T cd06528 262 NAIINEIKRTLEEQGLDVDIR 282 (363)
T ss_pred HHHHHHHHHHHHHCCCCCCHH
T ss_conf 999999988886078632057
No 403
>KOG1031 consensus
Probab=23.50 E-value=27 Score=15.45 Aligned_cols=21 Identities=10% Similarity=0.089 Sum_probs=15.4
Q ss_pred CCCCCHHHCCCCHHHHHHHHH
Q ss_conf 455654440110558999998
Q gi|254780465|r 219 INSINWARIMAQIVYYFVSSI 239 (469)
Q Consensus 219 ~NSIN~~Ril~Q~vyYf~a~~ 239 (469)
+|.--+.-.||-.-|-.+..+
T Consensus 663 ~nak~isd~lpfleyelh~~l 683 (1169)
T KOG1031 663 ANAKAISDGLPFLEYELHRQL 683 (1169)
T ss_pred HCHHHHHCCCCHHHHHHHHHH
T ss_conf 153455247832578999999
No 404
>pfam11637 UvsW ATP-dependant DNA helicase UvsW. This family of proteins represents the DNA helicase UvsW from bacteriophage T4. The protein is a member of the monomeric SF2 helicase superfamily and shows structural homology to the eukaryotic SF2 helicase Rad54. UvsW is thought to have a role in recombination and the rescue of stalled replication forks.
Probab=23.29 E-value=23 Score=15.93 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=12.1
Q ss_pred HHCCCCCCCCCCCCCCCCH
Q ss_conf 0102345565642001340
Q gi|254780465|r 295 YRPEIVMETTSPAMDIQIP 313 (469)
Q Consensus 295 y~~~~~~~T~SpsMDI~v~ 313 (469)
|.++.--.-++|||||++-
T Consensus 17 Y~kr~KE~el~~sdDIsvR 35 (54)
T pfam11637 17 YNKRVKEVELKPSDDISVR 35 (54)
T ss_pred HHHHHHHHCCCCCCCCCHH
T ss_conf 9977765156863320089
No 405
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=23.19 E-value=51 Score=13.53 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=14.0
Q ss_pred EEEEEECCCHHHHHHHHHHH--HCCCCC
Q ss_conf 38996346578878866777--508987
Q gi|254780465|r 248 ISFSVPTGNFGDIFAGYMAK--MMGLPI 273 (469)
Q Consensus 248 i~f~VPtGNfGni~Ag~~Ak--~MGLPI 273 (469)
+-+.+-+..|.-+.+ +++ .++|||
T Consensus 237 vmv~~~~~G~~~~~~--L~~~~~~~lpI 262 (411)
T PRK09549 237 LLFNVFAYGLDVLQS--LAEDDEIPVPI 262 (411)
T ss_pred EEEECCCCCHHHHHH--HHHCCCCCCEE
T ss_conf 999655363999999--98477889467
No 406
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=23.17 E-value=52 Score=13.53 Aligned_cols=92 Identities=16% Similarity=0.296 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCEEEECC-CCCE----EEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCEEEE
Q ss_conf 57899899999999986304766786047724-8825----46621389812068238889999999973-179820799
Q gi|254780465|r 64 GQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLN-ANEF----LLELFHGPTLSFKDIAMQFIAELMDHILE-ERDHYITIV 137 (469)
Q Consensus 64 ~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~-~~~~----vlELfHGPT~aFKD~a~q~l~~~~~~~l~-~~~~~~~il 137 (469)
|..|+++++.+++++ ++++ |.-+- +..| +-.=-|=|...|.|+.- .++.... .+++++ |+
T Consensus 1 g~~isp~e~~~~i~~-------~~~~-liDVR~~~E~~~Ghi~gA~nip~~~f~~~~~-----~~~~~~~~~k~k~i-vv 66 (101)
T cd01518 1 GTYLSPAEWNELLED-------PEVV-LLDVRNDYEYDIGHFKGAVNPDVDTFREFPF-----WLDENLDLLKGKKV-LM 66 (101)
T ss_pred CCCCCHHHHHHHHHC-------CCEE-EEECCCHHHHHCCEEEEEECCCCCCHHHHHH-----HHHHHHCCCCCCEE-EE
T ss_conf 963399999999818-------9919-9989697998078530318588302444279-----99872121438769-99
Q ss_pred ECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCH
Q ss_conf 7166540467999861667855999735776760
Q gi|254780465|r 138 GATSGDTGAAAIKAFAGKKRINMYILFPEGRISV 171 (469)
Q Consensus 138 ~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~ 171 (469)
-+.||-....|+.-++..---+|+.| .|+++.
T Consensus 67 yC~~G~RS~~Aa~~L~~~Gf~~V~~L--~GGi~~ 98 (101)
T cd01518 67 YCTGGIRCEKASAYLKERGFKNVYQL--KGGILK 98 (101)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCEEEE--CCHHHH
T ss_conf 85998279999999998498706896--635897
No 407
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; InterPro: IPR005863 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF, 6.3.2.15 from EC), which is required to catalyze the final step in the synthesis of the cytoplasmic precursor of the bacterial cell wall peptidoglycan. ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.. The crystal structure of the MurF apo-enzyme has been determined and refined to 2.3 A resolution. It contains three consecutive open alpha/beta-sheet domains. The topology of the N-terminal domain of MurF is unique, while its central and C-terminal domains exhibit similar mononucleotide and dinucleotide-binding folds to MurD. The apo-enzyme of MurF crystal structure reveals an open conformation with the three domains juxtaposed in a crescent-like arrangement creating a wide-open space where substrates are expected to bind. As such, catalysis is not feasible and significant domain closure is expected upon substrate binding . ; GO: 0005524 ATP binding, 0008766 UDP-N-acetylmuramoylalanyl-D-glutamyl-26-diaminopimelate-D-alanyl-D-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=23.06 E-value=38 Score=14.42 Aligned_cols=84 Identities=21% Similarity=0.352 Sum_probs=50.6
Q ss_pred HHHCCCCCCEEEEEE--CC---CHHHHHHHH-HHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCC-CC
Q ss_conf 874477887389963--46---578878866-777508987705872367633567753222010234556564200-13
Q gi|254780465|r 239 IALGSPNRNISFSVP--TG---NFGDIFAGY-MAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMD-IQ 311 (469)
Q Consensus 239 ~~~~~~~~~i~f~VP--tG---NfGni~Ag~-~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMD-I~ 311 (469)
+++..+++.+.+.+| .| |.-|++|+. +|+-+|+|++.+-.+ +.. .+...=-|. ++
T Consensus 256 f~~~~~~~~~~v~LP~~~G~h~n~~NalaA~Ala~~lG~~~~~~~~g----------L~~--------~~~~~gR~~~~~ 317 (462)
T TIGR01143 256 FTLVTPGGEIEVELPILLGRHPNVENALAAAALALALGLPLEEIAEG----------LSE--------LKPVKGRLEVIQ 317 (462)
T ss_pred EEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHH----------HHH--------CCCCCCCEEEEE
T ss_conf 89986370899983112088188999999999999809888899989----------764--------278876507898
Q ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 401378899987097089999998752026
Q gi|254780465|r 312 IPSNFERLLFEISGRNSLLVKEAFYSLENK 341 (469)
Q Consensus 312 v~SNfERllf~l~~~d~~~v~~~m~~l~~~ 341 (469)
...| =|+|=|.||-|++..+...+-+..-
T Consensus 318 ~~~g-~~~IdD~YNAnp~Sm~AAl~~L~~~ 346 (462)
T TIGR01143 318 TKKG-LTLIDDTYNANPDSMRAALDALARF 346 (462)
T ss_pred ECCC-EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 6487-4898441359889999999996138
No 408
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=23.02 E-value=52 Score=13.51 Aligned_cols=49 Identities=22% Similarity=0.353 Sum_probs=34.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC--CCHHHHCCCEEE
Q ss_conf 1798207997166540467999861667855999735776--760332131134
Q gi|254780465|r 129 ERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR--ISVVQQKQMTTS 180 (469)
Q Consensus 129 ~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~--vS~~Q~~qmtt~ 180 (469)
-++.++.|++| |--|+.++.... ..++.-+.+.=.+. .|.+||+.+.+.
T Consensus 22 L~~a~VlVvGa--GGLGs~~a~~La-~aGVG~i~ivD~D~Ve~SNL~RQ~L~~e 72 (339)
T PRK07688 22 IREKHVLIIGA--GALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTE 72 (339)
T ss_pred HHCCCEEEECC--CHHHHHHHHHHH-HCCCCEEEEEECCEECCCCCCCCCCCCH
T ss_conf 86297899877--777799999999-8489829998099924667886506562
No 409
>PRK07152 nadD putative nicotinate-nucleotide adenylyltransferase; Validated
Probab=22.88 E-value=11 Score=18.15 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=16.9
Q ss_pred CCCHHHHHHHHHHHHHHCCCEECC------CHHHHHHHHHH
Q ss_conf 138899999999999863959838------33999999999
Q gi|254780465|r 362 RASMEDVNSVIKSVLEKSNYLVDP------HTAVGIHAALA 396 (469)
Q Consensus 362 svsDeet~~~Ik~~y~~~gyiiDP------HTAvG~~aa~~ 396 (469)
..++++.++.++ +++.-+++ |.-+|...+++
T Consensus 235 ~~~~~~~~~~~~----~~~~~~~~~~~~llH~~~ga~~~k~ 271 (343)
T PRK07152 235 EWDEEELLKYLK----KYKIKLNNESWYVLHSYVGAYWLKH 271 (343)
T ss_pred CCCHHHHHHHHH----HCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 599999999999----8199755456221279999999999
No 410
>PRK01216 DNA polymerase IV; Validated
Probab=22.84 E-value=48 Score=13.74 Aligned_cols=76 Identities=14% Similarity=0.289 Sum_probs=34.8
Q ss_pred CCCCEEEEEECCCHHH--------------HHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCC
Q ss_conf 4787089971796588--------------89999997501543135831134556544401105589999987447788
Q gi|254780465|r 181 EASNINVIAVQSSFDD--------------CQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNR 246 (469)
Q Consensus 181 ~~~Nv~~i~v~G~FDD--------------cq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~ 246 (469)
-.+.|..++||-.|=| |+.+-++++. +.+|+.-=-|-..++++.++ ..+.+++.
T Consensus 95 ~~~~ve~~SiDEaflDlt~~~~~~~~~~~~a~~ir~~I~~------~~glt~SiGia~nk~lAKiA------s~~~KP~G 162 (351)
T PRK01216 95 YSDKIEIASIDEAYLDITDKVKDFDEAIELARKIKNEILE------KEKITVTVGIGPNKVFAKII------ADMAKPNG 162 (351)
T ss_pred CCCCEEECCCCCEEEECCHHHCCCCCHHHHHHHHHHHHHH------HHCCCEEEEECCCHHHHHHH------HHHCCCCC
T ss_conf 6993686457733563340110488899999999999999------97995688566549999998------87239995
Q ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 7389963465788788667775089877058
Q gi|254780465|r 247 NISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277 (469)
Q Consensus 247 ~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kli 277 (469)
.++||.++.-. ..-.|||+++-
T Consensus 163 --~~~v~~~~~~~-------fl~~lpv~~i~ 184 (351)
T PRK01216 163 --LGVISPEEVKE-------FLNNLDIDDVP 184 (351)
T ss_pred --EEEECHHHHHH-------HHHCCCCCEEC
T ss_conf --79988368999-------87609943854
No 411
>TIGR02673 FtsE cell division ATP-binding protein FtsE; InterPro: IPR005286 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). FtsE is an ABC transporter ATP-binding protein. This protein and its permease partner FtsX, localize to the cell division site. In a number of species, the ftsEX gene pair is located next to ftsY, which encodes the signal recognition particle-docki ng protein.; GO: 0005524 ATP binding, 0051301 cell division.
Probab=22.77 E-value=52 Score=13.48 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=47.3
Q ss_pred CCCE-EEEEECCC-HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEE-EECCCHH
Q ss_conf 7870-89971796-5888999999750154313583113455654440110558999998744778873899-6346578
Q gi|254780465|r 182 ASNI-NVIAVQSS-FDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFS-VPTGNFG 258 (469)
Q Consensus 182 ~~Nv-~~i~v~G~-FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~-VPtGNfG 258 (469)
-+|| .++.|.|. -++-|.=|++++.--.|.+|..-.. +--.+=.=|=| |-.+-.-...++-.+ =||||.=
T Consensus 97 ~eNVAl~L~V~G~~~~~I~~rV~~~L~~vGL~~K~~~~P---~~LSGGEQQRv----aIARAiv~~P~lLLADEPTGNLD 169 (215)
T TIGR02673 97 YENVALPLEVRGKKKREIQRRVEAALRLVGLEHKADAFP---EQLSGGEQQRV----AIARAIVNSPELLLADEPTGNLD 169 (215)
T ss_pred HHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHCCC---CCCCCCHHHHH----HHHHHHHCCCCEEEEECCCCCCC
T ss_conf 341121011138880336789999998528632542572---10047257888----88765304896798778899968
Q ss_pred HHHHHHH----H--HHCCCCCCEEEEECCCCCHHH
Q ss_conf 8788667----7--750898770587236763356
Q gi|254780465|r 259 DIFAGYM----A--KMMGLPIEKLIIATNENDTLV 287 (469)
Q Consensus 259 ni~Ag~~----A--k~MGLPI~kli~AtN~NdiL~ 287 (469)
.-+|-=+ - -+-|. -+|+||..-..+.
T Consensus 170 ~~~~~~iL~ll~~~n~~Gt---TV~vATHD~~L~~ 201 (215)
T TIGR02673 170 PALSERILDLLKELNKRGT---TVIVATHDLELVE 201 (215)
T ss_pred HHHHHHHHHHHHHHHHCCC---EEEEECCCHHHHH
T ss_conf 7678999999999841898---7999807879984
No 412
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=22.77 E-value=52 Score=13.48 Aligned_cols=61 Identities=18% Similarity=0.359 Sum_probs=36.5
Q ss_pred EEECCCCCHHHHHHHHHCCCCCCEEEEEC--CCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCC
Q ss_conf 99716654046799986166785599973--5776760332131134478708997179658889999997501
Q gi|254780465|r 136 IVGATSGDTGAAAIKAFAGKKRINMYILF--PEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSD 207 (469)
Q Consensus 136 il~ATSGDTGsAa~~a~~~~~~i~v~vly--P~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D 207 (469)
+++.-||..|++.+.+.... +.+|.+|- |+.. ..|+ ..+.++.. +.|+++|-..+. ++|.+
T Consensus 2 lV~GatG~iG~~vv~~L~~~-g~~Vr~l~R~~~~~--~~~~-----l~~~gve~--v~gD~~d~~sl~-~al~g 64 (232)
T pfam05368 2 LVFGATGYQGGSVVRASLKA-GHPVRALVRDPKSE--LAKS-----LKAAGVEL--VEGDLDDHESLV-EALKG 64 (232)
T ss_pred EEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCHH--HHHH-----HHHCCCEE--EEECCCCHHHHH-HHHCC
T ss_conf 99896828999999999858-99389997187366--5666-----64179889--990688878999-99679
No 413
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=22.69 E-value=53 Score=13.47 Aligned_cols=54 Identities=17% Similarity=0.229 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCEECCC-HHHHHHHHHHHHH----CCCCCEEEEEC
Q ss_conf 213421388999999999998639598383-3999999999874----79983999971
Q gi|254780465|r 357 SFSAKRASMEDVNSVIKSVLEKSNYLVDPH-TAVGIHAALACRK----SSSTPMVTLAT 410 (469)
Q Consensus 357 ~f~s~svsDeet~~~Ik~~y~~~gyiiDPH-TAvG~~aa~~~~~----~~~~p~VvLAT 410 (469)
.+-.+-.-.+|+.+.|+.+-..+|+++||- |+-+.....+.-. .+..+++.+-|
T Consensus 252 ~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHt 310 (323)
T COG2515 252 HHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHT 310 (323)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 57766876888999999999860951353323288999999986365777783699974
No 414
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase; InterPro: IPR006415 This group describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms . These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis .; GO: 0015444 magnesium-importing ATPase activity, 0015693 magnesium ion transport, 0016021 integral to membrane.
Probab=22.68 E-value=38 Score=14.42 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=6.4
Q ss_pred EECCCHHHHHHHHHHH
Q ss_conf 9838339999999998
Q gi|254780465|r 382 LVDPHTAVGIHAALAC 397 (469)
Q Consensus 382 iiDPHTAvG~~aa~~~ 397 (469)
++||--+..-.|...+
T Consensus 537 FlDPpKest~~AiaaL 552 (892)
T TIGR01524 537 FLDPPKESTKKAIAAL 552 (892)
T ss_pred CCCCCHHHHHHHHHHH
T ss_conf 0688010179999999
No 415
>pfam10767 DUF2593 Protein of unknown function (DUF2593). This family of proteins appear to be restricted to Enterobacteriaceae. Some members in the family are annotated as YbjO however currently there is no known function.
Probab=22.64 E-value=53 Score=13.46 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=34.5
Q ss_pred CCCCCCCCHHHC---CCCHHH--HHH-HHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHC
Q ss_conf 113455654440---110558--999-998744778873899634657887886677750
Q gi|254780465|r 216 LSGINSINWARI---MAQIVY--YFV-SSIALGSPNRNISFSVPTGNFGDIFAGYMAKMM 269 (469)
Q Consensus 216 l~s~NSIN~~Ri---l~Q~vy--Yf~-a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~M 269 (469)
++-.--.||+|. +.|+.- |.+ |.+ ...-|-.|+|..++-+.|+-..+-+|.
T Consensus 66 ~av~~g~NW~RW~yL~~Q~lv~~Yll~aSl---g~~~pelFsI~Ges~~eIlhsLllQKl 122 (144)
T pfam10767 66 FAVLKGRNWGRWGYLLCQIIAVGYLLAASL---GWGYPELFSIEGESKREILHSLLLQKI 122 (144)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 999744632779999999999999999996---458731056648863889999987147
No 416
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC.
Probab=22.42 E-value=53 Score=13.43 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=4.9
Q ss_pred CCCCCCEEEEC
Q ss_conf 76678604772
Q gi|254780465|r 84 RNAAVTPLIQL 94 (469)
Q Consensus 84 ~~~~~~pl~~l 94 (469)
..+|.+|+...
T Consensus 16 ~~pDRVPv~~~ 26 (378)
T cd03308 16 KKPDRVPILSQ 26 (378)
T ss_pred CCCCCEEEECC
T ss_conf 99972402011
No 417
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=22.39 E-value=53 Score=13.42 Aligned_cols=44 Identities=25% Similarity=0.396 Sum_probs=29.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99634657887886677750898770587236763356775322201023455656420013401378899987
Q gi|254780465|r 250 FSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEI 323 (469)
Q Consensus 250 f~VPtGNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l 323 (469)
.+|=.|..|...|-|+|+ +|. ++|..+ =+|..-.||+-|.+|..
T Consensus 3 ~IvG~GGLG~~~a~~La~-aGv--g~i~lv---------------------------D~D~Ve~SNL~RQ~~~~ 46 (174)
T cd01487 3 GIAGAGGLGSNIAVLLAR-SGV--GNLKLV---------------------------DFDVVEPSNLNRQQYFL 46 (174)
T ss_pred EEECCCHHHHHHHHHHHH-HCC--CEEEEE---------------------------ECCCCCCCCHHCCHHHH
T ss_conf 998767889999999998-189--739999---------------------------89946664430132477
No 418
>KOG0822 consensus
Probab=22.38 E-value=53 Score=13.42 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHCCCHH
Q ss_conf 1378899987097089
Q gi|254780465|r 314 SNFERLLFEISGRNSL 329 (469)
Q Consensus 314 SNfERllf~l~~~d~~ 329 (469)
-|+|-.-|+.+.+|+.
T Consensus 328 dNLe~~TYetFEkD~V 343 (649)
T KOG0822 328 DNLENQTYETFEKDPV 343 (649)
T ss_pred HHHHHHHHHHHHCCCH
T ss_conf 4244443556514635
No 419
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.34 E-value=53 Score=13.42 Aligned_cols=72 Identities=6% Similarity=0.097 Sum_probs=44.5
Q ss_pred CCCCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 79820799716-654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 130 RDHYITIVGAT-SGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 130 ~~~~~~il~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
++|...|-++| |.--|.|.+..|. ..+-+|++.+-.. +..+ +.....+.....+.+| .+-+||+++++++..
T Consensus 6 ~GK~~lVTG~~~~~GIG~a~A~~la-~~GA~Vvi~~~~~~~~~~----~~~~~~~~~~~~i~~Dv~~~~~v~~~~~~~~~ 80 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHIARVAQ-EQGAEVVLTGFRRLRLTE----RIAKRLPEPAPVLELDVTNEEHLASLADRVRE 80 (256)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHH-HCCCEEEEEECCCHHHHH----HHHHHCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 9997999899885689999999999-879999998389358999----99986588875999428899999999999999
No 420
>pfam08981 consensus
Probab=22.25 E-value=54 Score=13.41 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 7982079971665404679998616678559997
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYIL 163 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vl 163 (469)
.+=+.+|+.-|||+|+-.+++.+++. ++++++.
T Consensus 24 ~gI~~iVvASssG~TA~k~~e~~~~~-~~~lvvV 56 (181)
T pfam08981 24 LGIKHIVVASSSGETALKAAEALEGT-NLNVVVV 56 (181)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHCCC-CCEEEEE
T ss_conf 69976999807877999999871358-9559999
No 421
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=22.18 E-value=44 Score=14.01 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=9.5
Q ss_pred EECCCCCCCCCCCHH
Q ss_conf 621389812068238
Q gi|254780465|r 102 ELFHGPTLSFKDIAM 116 (469)
Q Consensus 102 ELfHGPT~aFKD~a~ 116 (469)
--|+.||+-|-| |.
T Consensus 33 ~f~~~ptGRFSn-G~ 46 (315)
T cd01837 33 DFPGRPTGRFSN-GR 46 (315)
T ss_pred CCCCCCCCCCCC-CC
T ss_conf 889999988789-88
No 422
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=22.08 E-value=54 Score=13.38 Aligned_cols=83 Identities=12% Similarity=0.085 Sum_probs=40.2
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCHHH---H
Q ss_conf 7997166540467999861667855999735776760332131134478708997179658889999997501543---1
Q gi|254780465|r 135 TIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFF---C 211 (469)
Q Consensus 135 ~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~~---~ 211 (469)
++++..||.+|++.+..... .++.+.++--+ -++. ....+..+ +++++|...+-..+-.-..+ .
T Consensus 2 IlVtGATG~iG~~v~~~L~~-~g~~v~~~~R~-----~~~~-----~~~~~~~v--~~d~~d~~~~~~a~~~~d~~~~~v 68 (285)
T TIGR03649 2 ILLTGGTGKTASRIARLLQA-ASVPFLVASRS-----SSSS-----AGPNEKHV--KFDWLDEDTWDNPFSSDDGMEPEI 68 (285)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCCEEEEECC-----HHHC-----CCCCCCEE--EEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 89998998189999999986-89978999588-----5664-----66667536--864448114888976353231274
Q ss_pred CCCCCCCCCCCCHHHCCCC
Q ss_conf 3583113455654440110
Q gi|254780465|r 212 HSVNLSGINSINWARIMAQ 230 (469)
Q Consensus 212 ~~~~l~s~NSIN~~Ril~Q 230 (469)
..+.+.+-++.|..+...+
T Consensus 69 ~~v~l~~p~~~~~~~~~~~ 87 (285)
T TIGR03649 69 SAVYLVAPPIPDLAPPMIK 87 (285)
T ss_pred EEEEECCCCCCCHHHHHHH
T ss_conf 1899838998776789999
No 423
>KOG0178 consensus
Probab=22.07 E-value=47 Score=13.83 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=15.3
Q ss_pred CCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 47870899717965888999999
Q gi|254780465|r 181 EASNINVIAVQSSFDDCQKIVKN 203 (469)
Q Consensus 181 ~~~Nv~~i~v~G~FDDcq~~Vk~ 203 (469)
..+|| +.+|-|.+-|+.-++..
T Consensus 68 l~d~i-aC~vaGlt~DAnvL~n~ 89 (249)
T KOG0178 68 LNDNI-ACAVAGLTSDANVLKNY 89 (249)
T ss_pred CCCCE-EEEEECCCCCHHHHHHH
T ss_conf 47744-78872355407899999
No 424
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme; InterPro: IPR006316 These sequences represent a family of pyridoxal-phosphate dependent enzymes that are closely related to the beta subunit of tryptophan synthase. ; GO: 0004834 tryptophan synthase activity, 0030170 pyridoxal phosphate binding, 0000162 tryptophan biosynthetic process.
Probab=22.04 E-value=54 Score=13.38 Aligned_cols=328 Identities=18% Similarity=0.202 Sum_probs=176.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHHHCCCCCCCEEEECCC-----C
Q ss_conf 86107888988998770999899999999875157--------8998999999999863047667860477248-----8
Q gi|254780465|r 31 IPKYIPRLSEKEIKDLRGLSYQEIALFIFRLFIGQ--------EIKSSKLRDIVNRSYHCFRNAAVTPLIQLNA-----N 97 (469)
Q Consensus 31 vP~~~p~~~~~~~~~~~~~sy~e~a~~il~~f~~~--------~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~-----~ 97 (469)
.|+.+|..-+.+=.+ .......|..-+=...+.. +||++.| +.|...-. ++||.+=.. +
T Consensus 12 LPe~L~pP~DPeg~r-~p~~~e~L~~ifp~~l~e~E~s~eR~i~IP~Evl-----~~Y~~~GR--PTPL~RA~~LEe~Lg 83 (426)
T TIGR01415 12 LPEPLPPPRDPEGER-EPIKIEKLKRIFPEKLIEQEVSEERWIDIPEEVL-----KAYAKIGR--PTPLIRAKGLEELLG 83 (426)
T ss_pred CCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH-----HHHHHHCC--CCHHHHHHHHHHHHC
T ss_conf 777676887888874-6558676546743677777402243676887899-----99975078--863466544478628
Q ss_pred C-EEEEEC-----CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEECCCCCCC
Q ss_conf 2-546621-----389812068238889999999973179820799716-654046799986166785599973577676
Q gi|254780465|r 98 E-FLLELF-----HGPTLSFKDIAMQFIAELMDHILEERDHYITIVGAT-SGDTGAAAIKAFAGKKRINMYILFPEGRIS 170 (469)
Q Consensus 98 ~-~vlELf-----HGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~AT-SGDTGsAa~~a~~~~~~i~v~vlyP~g~vS 170 (469)
. --+-.| --||+|+|==.+- |+ -|+.++.+-+- |.+=| -|-=|+|+.-|.+- -++++-|+-= |+|
T Consensus 84 t~gr~rIyyK~E~~~~tGSHK~NTA~--Aq--AYYak~~G~k~-l~TETGAGQWG~AlS~A~al-~~L~~~VfMv--r~S 155 (426)
T TIGR01415 84 TPGRARIYYKYESVSPTGSHKINTAI--AQ--AYYAKKEGAKR-LVTETGAGQWGSALSLAGAL-FGLKVKVFMV--RVS 155 (426)
T ss_pred CCCEEEEEEEECCCCCCCCCCHHHHH--HH--HHHHHHCCCEE-EECCCCCCHHHHHHHHHHHH-HCCEEEEEEE--ECC
T ss_conf 99527898740575778885244799--99--99875548437-43236886478999999987-2892589887--412
Q ss_pred ---HHHHCCCEEECCCCEEEEEECCCHHHH-HH-------------------HHHHHHCCHHHHCCCCCCCC-CCCCHHH
Q ss_conf ---033213113447870899717965888-99-------------------99997501543135831134-5565444
Q gi|254780465|r 171 ---VVQQKQMTTSEASNINVIAVQSSFDDC-QK-------------------IVKNLFSDVFFCHSVNLSGI-NSINWAR 226 (469)
Q Consensus 171 ---~~Q~~qmtt~~~~Nv~~i~v~G~FDDc-q~-------------------~Vk~~f~D~~~~~~~~l~s~-NSIN~~R 226 (469)
..|||.|-..-|-.|+ .=-..+=+. .+ .+..++.|++ .++.++|| |+ =
T Consensus 156 f~~KP~Rk~lM~~yGa~V~--PSPS~~T~~GR~~L~e~gP~~PGSLGiAISEA~e~al~~~~--~~Y~lGSVLnh----v 227 (426)
T TIGR01415 156 FQQKPYRKYLMELYGAEVI--PSPSELTEFGRKVLKEDGPDHPGSLGIAISEAIEEALSDED--TKYSLGSVLNH----V 227 (426)
T ss_pred HHCCHHHHHHHHHCCCEEC--CCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC--CEECCCHHHHH----H
T ss_conf 1048468999987088433--68877513468887406777786167899999999970899--44446305666----7
Q ss_pred CCCCHHHHHHHHHHHCCCCCCEEEEEEC----CCHHHHHHHHHHHHC--CCC-CC-EEEEECCC-CCHHHHHHHCCCHHC
Q ss_conf 0110558999998744778873899634----657887886677750--898-77-05872367-633567753222010
Q gi|254780465|r 227 IMAQIVYYFVSSIALGSPNRNISFSVPT----GNFGDIFAGYMAKMM--GLP-IE-KLIIATNE-NDTLVRMFDMGMYRP 297 (469)
Q Consensus 227 il~Q~vyYf~a~~~~~~~~~~i~f~VPt----GNfGni~Ag~~Ak~M--GLP-I~-kli~AtN~-NdiL~rf~~tG~y~~ 297 (469)
||=|+|--..|--|+...++..++.|=+ .|||-+.==+++-++ |=- ++ ++|++--+ --.|+ .|+|+-
T Consensus 228 LlHqTViGLEaKkQlE~~Ge~PD~~~GcVGGGSNFaG~~fPf~~D~Ls~G~~~~~~~fiA~Ep~a~P~lT----~GeY~Y 303 (426)
T TIGR01415 228 LLHQTVIGLEAKKQLEEAGEKPDVIIGCVGGGSNFAGLAFPFVADKLSSGKKFEDLRFIAAEPKACPTLT----KGEYRY 303 (426)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHCCHHHHHHCCCCCEEEEEEEEECCCCCCCCC----CCCCCC
T ss_conf 8876678764555324107999889997338544787750112234147873133478874730177445----764012
Q ss_pred C--CCCCCCCCCC-------CCCCHHHHHH-HHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHH
Q ss_conf 2--3455656420-------0134013788-9998709708999999875202651055202211000121342138899
Q gi|254780465|r 298 E--IVMETTSPAM-------DIQIPSNFER-LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMED 367 (469)
Q Consensus 298 ~--~~~~T~SpsM-------DI~v~SNfER-llf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDee 367 (469)
+ ++. -+.|=+ |--.|+-.-= |- |-+.+..++.+|+. -.+.+..++.+|
T Consensus 304 DfgDs~-~~tPLlKMYTLGhdf~PP~~HAGGLR---YHG~aP~ls~L~~~------------------G~v~A~A~~Q~E 361 (426)
T TIGR01415 304 DFGDSA-GLTPLLKMYTLGHDFIPPPIHAGGLR---YHGVAPTLSLLVNE------------------GLVEARAYDQEE 361 (426)
T ss_pred CCCCHH-HHHHHHHHHHCCCCCCCCCCHHCCHH---HHHHHHHHHHHHHC------------------CCCCCEECCHHH
T ss_conf 577712-33233554415766678850102111---32023799999873------------------853501238789
Q ss_pred HHHHHHHHHHHCCCEECCCHHHHHHHHH----HHHHCCCCCEEEE
Q ss_conf 9999999998639598383399999999----9874799839999
Q gi|254780465|r 368 VNSVIKSVLEKSNYLVDPHTAVGIHAAL----ACRKSSSTPMVTL 408 (469)
Q Consensus 368 t~~~Ik~~y~~~gyiiDPHTAvG~~aa~----~~~~~~~~p~VvL 408 (469)
+.+.++.+-+..|+|-=|=||=++.++. |++..+...+|++
T Consensus 362 ~F~~a~~fA~~EG~vPAPEs~HA~~~a~~~A~K~~~~g~ekvi~f 406 (426)
T TIGR01415 362 VFEAAVLFAKTEGIVPAPESAHAIAAAIDEARKAREEGKEKVILF 406 (426)
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 999999999837864896147899999999872766786038998
No 425
>KOG0173 consensus
Probab=22.03 E-value=54 Score=13.38 Aligned_cols=130 Identities=15% Similarity=0.174 Sum_probs=67.6
Q ss_pred CEEEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECC----------CCCHHHHHHHHHCCCCCC
Q ss_conf 6047724882546621389812068238889999999973179820799716----------654046799986166785
Q gi|254780465|r 89 TPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGAT----------SGDTGAAAIKAFAGKKRI 158 (469)
Q Consensus 89 ~pl~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~AT----------SGDTGsAa~~a~~~~~~i 158 (469)
..+..+.++.|.. -+-|.|=+++--++.++.+++..-..+++.-|++|. -|--|+|.+=+=.+..+-
T Consensus 69 ~KIH~ia~~Iycc---GAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~TGp 145 (271)
T KOG0173 69 EKIHFIAPNIYCC---GAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDPTGP 145 (271)
T ss_pred HHHHHCCCCEEEC---CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCEEEECCCCCCCC
T ss_conf 8776206625870---5774011899999987778988741487771454999999998875575561357724368887
Q ss_pred EEEEECCCCCCCHHHHCCCEEECCCCEEE-------EEECCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHC
Q ss_conf 59997357767603321311344787089-------9717965888999999750154313583113455654440
Q gi|254780465|r 159 NMYILFPEGRISVVQQKQMTTSEASNINV-------IAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARI 227 (469)
Q Consensus 159 ~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~-------i~v~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ri 227 (469)
+++..||+|.... ...++..+.-.-+ +..+=+=|..+.||.++..--=| .-|.|-++|+..=|
T Consensus 146 HLy~i~phGStd~---~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~---nDLgSGsnvdlcVI 215 (271)
T KOG0173 146 HLYSIHPHGSTDK---LPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIF---NDLGSGSNVDLCVI 215 (271)
T ss_pred CEEEECCCCCCCC---CCEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC---CCCCCCCCEEEEEE
T ss_conf 1689737997674---6445524601888999987357665889999999999986420---46578886659998
No 426
>pfam10165 Ric8 Guanine nucleotide exchange factor synembryn. Ric8 is involved in the EGL-30 neurotransmitter signalling pathway. It is a guanine nucleotide exchange factor that regulates neurotransmitter secretion.
Probab=21.98 E-value=54 Score=13.37 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=10.3
Q ss_pred HHHHHHHCCC--CCCCHHHHH
Q ss_conf 8899980879--888988988
Q gi|254780465|r 418 DTVKAASGIV--PDCPISLEQ 436 (469)
Q Consensus 418 e~V~~Aig~~--~~~P~~L~~ 436 (469)
+.|.+.+|.. ++.|..+..
T Consensus 378 ~~INPVTG~~~~~e~~n~~~~ 398 (438)
T pfam10165 378 RAINPITGQVEDAEKPNPMEG 398 (438)
T ss_pred CCCCCCCCCCCCCCCCCCCCC
T ss_conf 777987687678778999887
No 427
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=21.79 E-value=55 Score=13.34 Aligned_cols=146 Identities=12% Similarity=0.173 Sum_probs=79.9
Q ss_pred EECCCCCHHHHHHHCCCHHCC----CCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 723676335677532220102----3455656420013401378899987097089999998752026510552022110
Q gi|254780465|r 278 IATNENDTLVRMFDMGMYRPE----IVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQK 353 (469)
Q Consensus 278 ~AtN~NdiL~rf~~tG~y~~~----~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~m~~l~~~g~~~i~~~~l~~ 353 (469)
..+|.-..+.+-+..|...-+ ++..+.+|.|||.-|.++|.+...+. +....+|..-..+.+.++. +.++-
T Consensus 151 ~~~~~r~~~rkkLr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~----~m~~~~~~~kkkkrk~~Vk-~A~~~ 225 (444)
T COG1220 151 ESSATREKFRKKLREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQ----DMFGNLGGKKKKKRKLKVK-EAKKL 225 (444)
T ss_pred CCHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHH----HHHHHHCCCCCEEEEEEHH-HHHHH
T ss_conf 026799999999975887761799997226787534689985789999999----9998646887303665699-99998
Q ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHCCCE-ECCCHHHHHHH-------HHHHHHCC------------------CCCE--
Q ss_conf 00121342138899999999999863959-83833999999-------99987479------------------9839--
Q gi|254780465|r 354 MSLSFSAKRASMEDVNSVIKSVLEKSNYL-VDPHTAVGIHA-------ALACRKSS------------------STPM-- 405 (469)
Q Consensus 354 l~~~f~s~svsDeet~~~Ik~~y~~~gyi-iDPHTAvG~~a-------a~~~~~~~------------------~~p~-- 405 (469)
+...-...-++.+++...-...-++.|++ +|----++... .+.-...+ ..++
T Consensus 226 L~~eea~KLid~e~i~~eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILF 305 (444)
T COG1220 226 LIEEEADKLIDQEEIKQEAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILF 305 (444)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHCCEEEEEHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCCEEEE
T ss_conf 77778876269999999999998856908973466787437889988664320102103105754431544401443788
Q ss_pred EEEECCCCCCCHHHHHHHHCCCC
Q ss_conf 99971884349888999808798
Q gi|254780465|r 406 VTLATAHPSKFPDTVKAASGIVP 428 (469)
Q Consensus 406 VvLATAHPaKFpe~V~~Aig~~~ 428 (469)
|.-+--|-+|=+|-+-+.-|.-|
T Consensus 306 IasGAFh~sKPSDLiPELQGRfP 328 (444)
T COG1220 306 IASGAFHVAKPSDLIPELQGRFP 328 (444)
T ss_pred EECCCEECCCHHHCCHHHCCCCC
T ss_conf 71482003781321766627773
No 428
>pfam12575 DUF3753 Protein of unknown function (DUF3753). This family of proteins is found in viruses. Proteins in this family are approximately 70 amino acids in length. There is a conserved YLK sequence motif. There are two completely conserved residues (D and F) that may be functionally important.
Probab=21.78 E-value=55 Score=13.34 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCHHHCC
Q ss_conf 79658889999997501543135831134556544401
Q gi|254780465|r 191 QSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIM 228 (469)
Q Consensus 191 ~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NSIN~~Ril 228 (469)
|-+|++--+.||+++.|+.-. ..-++.+++||--++
T Consensus 17 ddDfe~Fi~vV~sVltdk~~~--~~~~~~~~~~~~~li 52 (72)
T pfam12575 17 DDDFENFINVVKSVLTDKKKL--KRRSSNTNSNWIILI 52 (72)
T ss_pred HHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHH
T ss_conf 667999999999997599643--334677750599999
No 429
>PRK00956 thyA thymidylate synthase; Provisional
Probab=21.75 E-value=55 Score=13.34 Aligned_cols=95 Identities=8% Similarity=0.034 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHHHCCHHHHCCCCCCCCCC-CCHHHCCCCHHHHHHHHHHHCCCCCCEEEE-------EECCCHHHHHH
Q ss_conf 7965888999999750154313583113455-654440110558999998744778873899-------63465788788
Q gi|254780465|r 191 QSSFDDCQKIVKNLFSDVFFCHSVNLSGINS-INWARIMAQIVYYFVSSIALGSPNRNISFS-------VPTGNFGDIFA 262 (469)
Q Consensus 191 ~G~FDDcq~~Vk~~f~D~~~~~~~~l~s~NS-IN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~-------VPtGNfGni~A 262 (469)
.|.+|+-+.+++++-.|++= ++.-++.-|- ..--.-+|-.. + ..|+.-.+.+++.. +-.|.--|+++
T Consensus 91 ~g~~DQi~~vi~~Lk~~p~s-RR~i~~~wnp~~~~~~~~~PC~-~---~~qf~v~~~kL~~~~~~RS~D~~lg~p~Ni~~ 165 (208)
T PRK00956 91 PGDVDQIDYIVEKLKEQPNS-RRATAVTWDPPIDTKVDEVPCL-Q---LVQFLIRDNKLYLTVLFRSNDAGGAFPANAIG 165 (208)
T ss_pred CCCCHHHHHHHHHHHCCCCC-CEEEEEEECCCHHCCCCCCCCC-C---EEEEEEECCEEEEEEEEECCCCCCCCCHHHHH
T ss_conf 99841999999997059996-2699985881222157898996-1---89999949928999985624331455516999
Q ss_pred -----HHHHHHCCCCCCEEEEECCCCCHHHHHH
Q ss_conf -----6677750898770587236763356775
Q gi|254780465|r 263 -----GYMAKMMGLPIEKLIIATNENDTLVRMF 290 (469)
Q Consensus 263 -----g~~Ak~MGLPI~kli~AtN~NdiL~rf~ 290 (469)
-++|+..|+.++.++..+..-+|-.+-+
T Consensus 166 ~~~L~~~iA~~~gl~~G~~~~~~~~~HIY~~h~ 198 (208)
T PRK00956 166 LIKLGEYVAEKVGVEPGTYTHHSVSAHIYEHDW 198 (208)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEEEEEECHHHH
T ss_conf 999999999883994059999975379848789
No 430
>COG1780 NrdI Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]
Probab=21.72 E-value=55 Score=13.33 Aligned_cols=26 Identities=35% Similarity=0.659 Sum_probs=14.5
Q ss_pred EEEEEECC--CHHHHHH---HHHHHHCCCCC
Q ss_conf 38996346--5788788---66777508987
Q gi|254780465|r 248 ISFSVPTG--NFGDIFA---GYMAKMMGLPI 273 (469)
Q Consensus 248 i~f~VPtG--NfGni~A---g~~Ak~MGLPI 273 (469)
+.=+|-|| |||+.|| -.+++|.|.|+
T Consensus 76 ~rGViaSGN~NfG~~f~~Ag~~iS~k~~vPl 106 (141)
T COG1780 76 CRGVIASGNRNFGDNFALAGDVISAKCGVPL 106 (141)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCE
T ss_conf 6778852776277888887899998749977
No 431
>KOG2585 consensus
Probab=21.66 E-value=55 Score=13.33 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=10.1
Q ss_pred EEECCCHHHHHH--HHHHHHCCC
Q ss_conf 963465788788--667775089
Q gi|254780465|r 251 SVPTGNFGDIFA--GYMAKMMGL 271 (469)
Q Consensus 251 ~VPtGNfGni~A--g~~Ak~MGL 271 (469)
|=|.-|-|+... -.+ +.+|.
T Consensus 273 cgpgnnggdg~v~gRHL-~~~G~ 294 (453)
T KOG2585 273 CGPGNNGGDGLVCGRHL-AQHGY 294 (453)
T ss_pred ECCCCCCCHHHHHHHHH-HHCCC
T ss_conf 57987531257778899-87086
No 432
>KOG4827 consensus
Probab=21.57 E-value=29 Score=15.30 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=35.2
Q ss_pred EEECCCCCCCHHHHCCCEEECCCCEEEEEECCC----HHHHHHHHHHHHCCHHHHCCCCCCCC
Q ss_conf 997357767603321311344787089971796----58889999997501543135831134
Q gi|254780465|r 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSS----FDDCQKIVKNLFSDVFFCHSVNLSGI 219 (469)
Q Consensus 161 ~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~----FDDcq~~Vk~~f~D~~~~~~~~l~s~ 219 (469)
--|||.|.-|+.|++|.-+.. +-+|+ +.-+|-.....|.|.+|......-|+
T Consensus 34 TdlY~~~Ssspqqqqq~~~iR-------~~~~dpTdldkk~QftlEhaFGdkdF~~anGtfSa 89 (279)
T KOG4827 34 TDLYPLGSSSPQQQQQIEMIR-------AFDGDPTDLDKKAQFTLEHAFGDKDFEAANGTFSA 89 (279)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-------HHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 454346788754432104556-------43389644442335668765062212324664678
No 433
>PRK00082 hrcA heat-inducible transcription repressor; Provisional
Probab=21.30 E-value=44 Score=13.98 Aligned_cols=49 Identities=16% Similarity=0.112 Sum_probs=34.7
Q ss_pred CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEEC
Q ss_conf 4046799986166785599973577676033213113447870899717
Q gi|254780465|r 143 DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQ 191 (469)
Q Consensus 143 DTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~ 191 (469)
++=.-|+.......+.-.+|+.|...-+.+++-++....+..+-++-|-
T Consensus 107 ~~l~~aa~~Ls~lT~~~~vv~~p~~~~~~lk~Ielv~l~~~~~l~vlVt 155 (339)
T PRK00082 107 DVLQEAAQLLSELTGYTAVVLTPELSNSRLKHIELVPLSPHRALAILVT 155 (339)
T ss_pred HHHHHHHHHHHHHHCCEEEEECCCCCCCCEEEEEEEEECCCEEEEEEEE
T ss_conf 9999999999998688599980566643046899998079718999994
No 434
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.26 E-value=56 Score=13.27 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=78.4
Q ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCC----CCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHHHHCCH
Q ss_conf 207997166540467999861667855999735776----7603321311344787089971796588899999975015
Q gi|254780465|r 133 YITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGR----ISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDV 208 (469)
Q Consensus 133 ~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~----vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~ 208 (469)
++.|++| +|..|++.+.+.......+-++|+=-.+ .-+++. +.+ ...+..+.-.++..|| +.|.
T Consensus 2 KV~IIGA-~G~VG~~~A~~l~~~~~~~elvLiDi~~~~g~a~DL~h--~~~--~~~v~~~~~~~~~~~~-------l~da 69 (310)
T cd01337 2 KVAVLGA-AGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSH--INT--PAKVTGYLGPEELKKA-------LKGA 69 (310)
T ss_pred EEEEECC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHC--CCC--CCCEEEEECCCCHHHH-------HCCC
T ss_conf 8999999-98189999999972999776999827742667553216--565--6851257088746677-------4799
Q ss_pred HHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH--HHCCCCCCEEEEECCCCCH-
Q ss_conf 4313583113455654440110558999998744778873899634657887886677--7508987705872367633-
Q gi|254780465|r 209 FFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMA--KMMGLPIEKLIIATNENDT- 285 (469)
Q Consensus 209 ~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~A--k~MGLPI~kli~AtN~Ndi- 285 (469)
++ +-+++. ..|--+|. -+++...+.+ |+..+.- ++-+ |=..++++||.=|+
T Consensus 70 Di---VVitAG----~~rkpG~t------R~dLl~~N~~------------I~k~i~~~i~~~~-p~aiiivvtNPvD~l 123 (310)
T cd01337 70 DV---VVIPAG----VPRKPGMT------RDDLFNINAG------------IVRDLATAVAKAC-PKALILIISNPVNST 123 (310)
T ss_pred CE---EEECCC----CCCCCCCC------HHHHHHHHHH------------HHHHHHHHHHHCC-CCEEEEEEECCHHHH
T ss_conf 99---998789----88997989------8999874078------------8999999998209-984999970834779
Q ss_pred ---HHHHH-HCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf ---56775-32220102345565642001340137889998709708999999
Q gi|254780465|r 286 ---LVRMF-DMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEA 334 (469)
Q Consensus 286 ---L~rf~-~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~d~~~v~~~ 334 (469)
.+.++ .+|.|.++.+.-| + ...++-|-++|-+..+-++.-|..+
T Consensus 124 t~i~~~~~k~~~~~p~~rViG~-T----~LDsaR~r~~la~~l~v~~~~V~a~ 171 (310)
T cd01337 124 VPIAAEVLKKAGVYDPKRLFGV-T----TLDVVRANTFVAELLGLDPAKVNVP 171 (310)
T ss_pred HHHHHHHHHHHCCCCCCCEEEE-E----EHHHHHHHHHHHHHHCCCHHHCEEE
T ss_conf 9999999998179981207876-5----0888999999999959787770667
No 435
>PRK05443 polyphosphate kinase; Provisional
Probab=21.21 E-value=24 Score=15.87 Aligned_cols=114 Identities=14% Similarity=0.193 Sum_probs=72.2
Q ss_pred HCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEE-----CCCHHHHHHHHHHHHCCHH------HHCCCCCCCCC
Q ss_conf 616678559997357767603321311344787089971-----7965888999999750154------31358311345
Q gi|254780465|r 152 FAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAV-----QSSFDDCQKIVKNLFSDVF------FCHSVNLSGIN 220 (469)
Q Consensus 152 ~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v-----~G~FDDcq~~Vk~~f~D~~------~~~~~~l~s~N 220 (469)
|.....-++++.||...-+++=+---.+..+++|..|.+ .++.-=.+.|++.+=+-++ ++. ++-=.|
T Consensus 335 F~~I~~~DiLlhhPY~SF~~vv~fl~~AA~DP~V~aIK~TLYR~a~~S~Iv~aLi~AA~nGK~VtvlVELkA--RFDEe~ 412 (692)
T PRK05443 335 FAAIRKKDILLHHPYESFDPVVEFLRQAAADPDVLAIKQTLYRTSKDSPIVDALIEAAENGKQVTVLVELKA--RFDEEA 412 (692)
T ss_pred HHHHHCCCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECC--CCCHHH
T ss_conf 999861797985777564799999999827998138988898427988899999999982988999999733--406788
Q ss_pred CCCHHHCC----CCHHHHHHHHHHH-------CCCCCCE--EEEEECCCHHHHHHHHHHH
Q ss_conf 56544401----1055899999874-------4778873--8996346578878866777
Q gi|254780465|r 221 SINWARIM----AQIVYYFVSSIAL-------GSPNRNI--SFSVPTGNFGDIFAGYMAK 267 (469)
Q Consensus 221 SIN~~Ril----~Q~vyYf~a~~~~-------~~~~~~i--~f~VPtGNfGni~Ag~~Ak 267 (469)
-|.|+|-| +|++|-+-.+.-- .+.+..+ ..-+=||||-..+|-.|.-
T Consensus 413 NI~wA~~Le~aGv~ViYG~~glKvHaK~~LI~Rre~~~~~~Y~higTGNyn~~TA~~YtD 472 (692)
T PRK05443 413 NIRWARRLEEAGVHVVYGVVGLKTHAKLALVVRREGGKLRRYVHLGTGNYNPKTARLYTD 472 (692)
T ss_pred HHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEECCCCCCHHHHHHEEE
T ss_conf 899999998599299917888500578999999707968999998778849454646540
No 436
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=21.12 E-value=56 Score=13.25 Aligned_cols=132 Identities=20% Similarity=0.214 Sum_probs=71.1
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCC-EEEEE-------CCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 820799716654046799986166785-59997-------3577676033213113447870899717965888999999
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRI-NMYIL-------FPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKN 203 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i-~v~vl-------yP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk~ 203 (469)
+|+.|++| |-||+-.++-.+.++-- +++.| -|+||- .-|.-...=.-|=..|-|+-|=.++.=..
T Consensus 2 kKisvIGA--GfvGaTTAf~lA~KeLard~VLlDiPqvEg~pqGKA-----LDmyEasPv~gFD~kvTGtnnYaDTAnSD 74 (308)
T TIGR01763 2 KKISVIGA--GFVGATTAFLLAEKELARDVVLLDIPQVEGVPQGKA-----LDMYEASPVEGFDVKVTGTNNYADTANSD 74 (308)
T ss_pred CEEEEECC--CCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCH-----HHHHHCCCCCCCCCEEECCCCCHHHCCCC
T ss_conf 55899706--861258999998674067168985055586888633-----22110277663112362578700211883
Q ss_pred HHCC-HHHHCC-----CCCCCCCCCCHHHCCCC-HHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEE
Q ss_conf 7501-543135-----83113455654440110-5589999987447788738996346578878866777508987705
Q gi|254780465|r 204 LFSD-VFFCHS-----VNLSGINSINWARIMAQ-IVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKL 276 (469)
Q Consensus 204 ~f~D-~~~~~~-----~~l~s~NSIN~~Ril~Q-~vyYf~a~~~~~~~~~~i~f~VPtGNfGni~Ag~~Ak~MGLPI~kl 276 (469)
+-.= ..+.+| --|.|.|.- +.|=..| ++ ++ + ..+|.++ --|==++.-...+++.|||=+|.
T Consensus 75 ivViTaG~pRKPGMsReDL~s~Na~-I~R~v~~~i~-------~~-S-pn~iIvv--v~NPlDaMTy~a~~~SGfPKERV 142 (308)
T TIGR01763 75 IVVITAGLPRKPGMSREDLVSVNAD-IVREVTSRIV-------EY-S-PNAIIVV--VSNPLDAMTYVAYKKSGFPKERV 142 (308)
T ss_pred EEEECCCCCCCCCCCHHHHHHHCCH-HHHHHHHHHH-------HC-C-CCCEEEE--ECCCHHHHHHHHHHHCCCCCCCE
T ss_conf 7998167887547887899861334-6899999997-------31-8-9968999--71805789999997158974213
Q ss_pred EEECCC
Q ss_conf 872367
Q gi|254780465|r 277 IIATNE 282 (469)
Q Consensus 277 i~AtN~ 282 (469)
|=-+-.
T Consensus 143 IG~aGV 148 (308)
T TIGR01763 143 IGQAGV 148 (308)
T ss_pred ECCCCC
T ss_conf 236661
No 437
>KOG4249 consensus
Probab=21.11 E-value=29 Score=15.25 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=21.0
Q ss_pred ECCCHHHHHH-----HHHHHHCCCCCCEEEEECCC
Q ss_conf 3465788788-----66777508987705872367
Q gi|254780465|r 253 PTGNFGDIFA-----GYMAKMMGLPIEKLIIATNE 282 (469)
Q Consensus 253 PtGNfGni~A-----g~~Ak~MGLPI~kli~AtN~ 282 (469)
-.||||+|+| +.+++.||+-+..++.-++.
T Consensus 162 ~~~N~~dV~Akges~~~~~~laG~g~gili~~~i~ 196 (408)
T KOG4249 162 KQGNFGDVGAKGESQSTASNLAGLGFGILILGRIG 196 (408)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 52358877543469999999887678888607666
No 438
>cd03681 MM_CoA_mutase_MeaA Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, MeaA-like subfamily; contains various methylmalonyl coenzyme A (CoA) mutase (MCM)-like proteins similar to the Streptomyces cinnamonensis MeaA, Methylobacterium extorquens MeaA and Streptomyces collinus B12-dependent mutase. Members of this subfamily contain an N-terminal MCM domain and a C-terminal coenzyme B12 binding domain. S. cinnamonensis MeaA is a putative B12-dependent mutase which provides methylmalonyl-CoA precursors for the biosynthesis of the monensin polyketide via an unknown pathway. S. collinus B12-dependent mutase may be involved in a pathway for acetate assimilation.
Probab=21.07 E-value=57 Score=13.25 Aligned_cols=10 Identities=10% Similarity=0.577 Sum_probs=4.7
Q ss_pred CCCHHHHHHH
Q ss_conf 1340137889
Q gi|254780465|r 310 IQIPSNFERL 319 (469)
Q Consensus 310 I~v~SNfERl 319 (469)
++.|+-|.|-
T Consensus 298 lglP~~~s~r 307 (407)
T cd03681 298 LGLPRPWDQQ 307 (407)
T ss_pred HCCCCHHHHH
T ss_conf 2289616789
No 439
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=21.07 E-value=57 Score=13.25 Aligned_cols=196 Identities=21% Similarity=0.332 Sum_probs=86.3
Q ss_pred HHHHHHHHC-CCCCEEEE-ECCCCCHHHHHHHHHCC--CCCCEEEEECCCCC--CCHHHHCCCEEECCCCEEEEEECCCH
Q ss_conf 999999731-79820799-71665404679998616--67855999735776--76033213113447870899717965
Q gi|254780465|r 121 ELMDHILEE-RDHYITIV-GATSGDTGAAAIKAFAG--KKRINMYILFPEGR--ISVVQQKQMTTSEASNINVIAVQSSF 194 (469)
Q Consensus 121 ~~~~~~l~~-~~~~~~il-~ATSGDTGsAa~~a~~~--~~~i~v~vlyP~g~--vS~~Q~~qmtt~~~~Nv~~i~v~G~F 194 (469)
|.+|=+|.- +++|+=|. .|-+|.+ .-+..+.. .-.|.|+.|.=+-+ |-|+=|..|-.- .--.+|=|=.+.
T Consensus 142 RaiDGlLTcG~GQRiGIFA~aG~GKS--TLL~~i~~g~~ADv~V~ALIGERGREVREFiE~~lg~e--~~~RsVlVvsTS 217 (430)
T TIGR02546 142 RAIDGLLTCGEGQRIGIFAGAGVGKS--TLLGMIARGASADVNVIALIGERGREVREFIEHLLGEE--GRKRSVLVVSTS 217 (430)
T ss_pred HHHHHHHHCCCCCEEEEEECCCCCHH--HHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHCCCHH--HCCCEEEEEECC
T ss_conf 67543440366530578708886166--89999861898878998602787604788875207830--524248996079
Q ss_pred HH-----HH-----HHHHHHHCCHHHHCCCCCCCCCCCC-HHHCCCCHHHHHHHHHHHCCC-----CCCEEE-EEE----
Q ss_conf 88-----89-----9999975015431358311345565-444011055899999874477-----887389-963----
Q gi|254780465|r 195 DD-----CQ-----KIVKNLFSDVFFCHSVNLSGINSIN-WARIMAQIVYYFVSSIALGSP-----NRNISF-SVP---- 253 (469)
Q Consensus 195 DD-----cq-----~~Vk~~f~D~~~~~~~~l~s~NSIN-~~Ril~Q~vyYf~a~~~~~~~-----~~~i~f-~VP---- 253 (469)
|- |+ +.+-+-|.|+- +++ |-=.-|+- |+|=+=-| .|-.+.+ -.|=.| .+|
T Consensus 218 Drss~eR~~AAy~ATaIAEYFRDQG--k~V-lLmmDSlTRfARA~REi------GLAaGEP~aR~GyPPSVF~~LPRLLE 288 (430)
T TIGR02546 218 DRSSLERLKAAYTATAIAEYFRDQG--KRV-LLMMDSLTRFARALREI------GLAAGEPPARRGYPPSVFSSLPRLLE 288 (430)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCC--CEE-EEEEECHHHHHHHHHHH------HHHCCCCCCCCCCCCCHHHHCCHHHC
T ss_conf 8667999999878879999999739--907-98840277999998778------87537840025778736650750122
Q ss_pred -CCC--HHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHC---CCH--HCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf -465--788788667775089877058723676335677532---220--102345565642001340137889998709
Q gi|254780465|r 254 -TGN--FGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDM---GMY--RPEIVMETTSPAMDIQIPSNFERLLFEISG 325 (469)
Q Consensus 254 -tGN--fGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~t---G~y--~~~~~~~T~SpsMDI~v~SNfERllf~l~~ 325 (469)
+|| =|=|||=|- =|+---|.||++.+-..+ |.. +++=...-..|||||+.| .-|.+-.+..
T Consensus 289 RaG~~e~GSITA~YT---------VLvEgDd~~dP~ADEvRSILDGHIvLsR~LA~~~HyPAIDVLaS--~SRvm~~vv~ 357 (430)
T TIGR02546 289 RAGNSEKGSITALYT---------VLVEGDDMNDPIADEVRSILDGHIVLSRKLAERNHYPAIDVLAS--LSRVMSQVVS 357 (430)
T ss_pred CCCCCCCCCEEEEEE---------EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH--HHHHCCCCCC
T ss_conf 786112962534567---------87627779984366554454236899899974168863566523--6642367788
Q ss_pred C----CHHHHHHHHHHHCC
Q ss_conf 7----08999999875202
Q gi|254780465|r 326 R----NSLLVKEAFYSLEN 340 (469)
Q Consensus 326 ~----d~~~v~~~m~~l~~ 340 (469)
. .+.+++++|...++
T Consensus 358 ~eH~~aA~~lR~LLA~Y~e 376 (430)
T TIGR02546 358 KEHRRAAGKLRRLLAKYKE 376 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999999999999
No 440
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=21.07 E-value=57 Score=13.25 Aligned_cols=174 Identities=13% Similarity=0.177 Sum_probs=86.0
Q ss_pred HHCCCCCCCCCCCCCCCCCCCH-----HHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCE---
Q ss_conf 8615678786328610788898-----89987709998999999998751578998999999999863047667860---
Q gi|254780465|r 19 ILSGLATDGGLYIPKYIPRLSE-----KEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNAAVTP--- 90 (469)
Q Consensus 19 ~~~Gla~DGGL~vP~~~p~~~~-----~~~~~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~f~~~~~~p--- 90 (469)
+.+=|...|| .+----|+-+. ..+.+..+++=.+++. | .+++++++-..+-.++==.|..|.++-
T Consensus 50 ~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~-----l-tGev~p~~R~~~w~~~kVfvaTPQvveNDl 122 (542)
T COG1111 50 IANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAA-----L-TGEVRPEEREELWAKKKVFVATPQVVENDL 122 (542)
T ss_pred HHHHHHHCCC-EEEEECCCCHHHHHHHHHHHHHHCCCHHHEEE-----E-CCCCCHHHHHHHHHHCCEEEECCHHHHHHH
T ss_conf 9999874588-48996589517999999999985898433231-----1-177786889998751778995638777687
Q ss_pred -EEECCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCC
Q ss_conf -4772488254662138981206823888999999997317982079971665404679998616678559997357767
Q gi|254780465|r 91 -LIQLNANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRI 169 (469)
Q Consensus 91 -l~~l~~~~~vlELfHGPT~aFKD~a~q~l~~~~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~v 169 (469)
--.++....+|=.|.---.|--+.|-.++++. |+..+++-+++=|+||-|-+-....+.+.+..--++.|- -++.
T Consensus 123 ~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~--y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevr-TE~d- 198 (542)
T COG1111 123 KAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKE--YLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVR-TEED- 198 (542)
T ss_pred HCCCCCHHHCEEEEECHHHHCCCCCHHHHHHHH--HHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEEE-CCCC-
T ss_conf 617667678058986235541376069999999--998256843798723899987999999983795428984-5788-
Q ss_pred CHHHHCCCEEECCCCEEEEEEC--CCHHHHHHHHHHHHCC
Q ss_conf 6033213113447870899717--9658889999997501
Q gi|254780465|r 170 SVVQQKQMTTSEASNINVIAVQ--SSFDDCQKIVKNLFSD 207 (469)
Q Consensus 170 S~~Q~~qmtt~~~~Nv~~i~v~--G~FDDcq~~Vk~~f~D 207 (469)
.++ +..+ ...-|.-|.|+ .-+++.-.+.++++.+
T Consensus 199 ~DV-~~Yv---~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 199 PDV-RPYV---KKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred CCH-HHHH---CCCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 517-7751---40424899636858999999999999999
No 441
>TIGR02470 sucr_synth sucrose synthase; InterPro: IPR012820 This entry represents sucrose synthase an enzyme that despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyses the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.; GO: 0016157 sucrose synthase activity.
Probab=21.03 E-value=53 Score=13.43 Aligned_cols=56 Identities=18% Similarity=0.418 Sum_probs=42.4
Q ss_pred HHHHHHHCCC-CC-CEEEEECCCCCCCHHHHCCCEE--ECCCCEEEEEECCCHHHHHHHHHHHHCCHH
Q ss_conf 6799986166-78-5599973577676033213113--447870899717965888999999750154
Q gi|254780465|r 146 AAAIKAFAGK-KR-INMYILFPEGRISVVQQKQMTT--SEASNINVIAVQSSFDDCQKIVKNLFSDVF 209 (469)
Q Consensus 146 sAa~~a~~~~-~~-i~v~vlyP~g~vS~~Q~~qmtt--~~~~Nv~~i~v~G~FDDcq~~Vk~~f~D~~ 209 (469)
.+++|+|-++ |- =+|+||-|||... |+.-|=- ++|.=|+++ |+..+|=+++..+-.
T Consensus 245 p~~LE~Fl~~iPmvFnvvilSpHGyFg--Q~~VLG~PDTGGQVVYiL------DQVRaLE~em~~ri~ 304 (790)
T TIGR02470 245 PSVLEAFLGRIPMVFNVVILSPHGYFG--QENVLGLPDTGGQVVYIL------DQVRALENEMLERIK 304 (790)
T ss_pred HHHHHHHHCCCCCCEEEEEECCCCCCC--CCCCCCCCCCCCEEEEEE------HHHHHHHHHHHHHHH
T ss_conf 558999851234100054554664001--477658888886577510------446999999999998
No 442
>pfam11672 DUF3268 Protein of unknown function (DUF3268). This family of proteins has no known function.
Probab=20.84 E-value=33 Score=14.84 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=11.7
Q ss_pred HHHHHHCCCCCCEEEE
Q ss_conf 6677750898770587
Q gi|254780465|r 263 GYMAKMMGLPIEKLII 278 (469)
Q Consensus 263 g~~Ak~MGLPI~kli~ 278 (469)
.|+|++||||.++-++
T Consensus 86 ~wLA~~lgl~~~~cHi 101 (102)
T pfam11672 86 AWLAAKLGLPEEECHI 101 (102)
T ss_pred HHHHHHCCCCHHHCCC
T ss_conf 9999981998776756
No 443
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain; InterPro: IPR005972 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=20.82 E-value=21 Score=16.30 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=76.1
Q ss_pred HHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHCCCEEECCCCEEEEEECCCHHHHHHHHH
Q ss_conf 99997317982079971665404679998616678559997357767603321311344787089971796588899999
Q gi|254780465|r 123 MDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVK 202 (469)
Q Consensus 123 ~~~~l~~~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g~vS~~Q~~qmtt~~~~Nv~~i~v~G~FDDcq~~Vk 202 (469)
....|++-+-+ |+.--|||---+.++ +.+..++-+++=+..+.-+-| .|=+--| | ++ ++=||=....+++
T Consensus 228 ~~~lLEe~Glr--vvA~~sGDgT~~~~~---~~~~akLnli~CyRSmNYi~~-~MEekYG--i-PW-~e~NFfGp~~i~~ 297 (521)
T TIGR01282 228 SRILLEEIGLR--VVAQWSGDGTLAEIE---NTPKAKLNLIHCYRSMNYISR-HMEEKYG--I-PW-MEYNFFGPTKIAE 297 (521)
T ss_pred HHHHHHHCCCE--EEEEECCCHHHHHHH---CCCCCCEEEEEEECCHHHHHH-HHHHHCC--C-CC-EEEECCCHHHHHH
T ss_conf 99999736948--998502626899986---066666468985143668877-8786508--9-83-6873348468999
Q ss_pred ------HHHCCHHHHCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCH-HHHHHHHHHHHCCCCCCE
Q ss_conf ------9750154313583113455654440110558999998744778873899634657-887886677750898770
Q gi|254780465|r 203 ------NLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNF-GDIFAGYMAKMMGLPIEK 275 (469)
Q Consensus 203 ------~~f~D~~~~~~~~l~s~NSIN~~Ril~Q~vyYf~a~~~~~~~~~~i~f~VPtGNf-Gni~Ag~~Ak~MGLPI~k 275 (469)
+.|-|+.++++..-. ++|=-+|+-==. +..+-+-.++.+-..| .|-= =++..+| .-+|+ +
T Consensus 298 sLR~iA~~FDd~~i~~~~E~V------IA~y~~~~~~~i-~~yr~rl~Gk~v~L~v-GGlR~rh~~~a~--~dLGm---~ 364 (521)
T TIGR01282 298 SLRKIAEFFDDPEIKEKAEEV------IAKYQPQVDAVI-AKYRPRLEGKTVMLYV-GGLRPRHVIGAY--EDLGM---E 364 (521)
T ss_pred HHHHHHHHCCCHHHHHHHHHH------HHHHHHHHHHHH-HHHHHHHCCCEEEEEE-CCCCCCHHHHHH--HHCCC---E
T ss_conf 999998546966788888899------998889999999-9998742499999971-789740235446--53885---2
Q ss_pred EEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 58723676335677532220102345565642001340137889
Q gi|254780465|r 276 LIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERL 319 (469)
Q Consensus 276 li~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERl 319 (469)
+|.|= +.|=..-+|++|++.|++--. ..++|+|-+
T Consensus 365 ~igtG------YEFAH~DDY~rR~v~P~ik~~---a~~~~~~~~ 399 (521)
T TIGR01282 365 VIGTG------YEFAHNDDYERREVIPKIKID---ADSKNIEEV 399 (521)
T ss_pred EEEEC------CCCCCCCCCCCCCCCHHHHHH---HHHCCCCCC
T ss_conf 89713------014656654311103123333---200001222
No 444
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=20.74 E-value=57 Score=13.20 Aligned_cols=70 Identities=20% Similarity=0.335 Sum_probs=42.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 820799716654046799986166785599973577-676033213113447870899717-96588899999975
Q gi|254780465|r 132 HYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLF 205 (469)
Q Consensus 132 ~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f 205 (469)
.-++|-+|||| -|-+++.++..+ +-+|++.--.- |.-...+ ++.. ...|+..+.+| ++++.....++++.
T Consensus 7 ~TvvITGansG-IG~eta~~La~~-ga~Vil~~R~~~k~~~a~~-~i~~-~~~~~~~~~lDLssl~SVr~~a~~~~ 78 (322)
T PRK07453 7 GTVLITGASSG-VGLYAAKALAKR-GWHVIMACRSLKKAEAAAQ-ELGI-PPDSYTIIHIDLGDLDSVRRFVDDFR 78 (322)
T ss_pred CEEEEECCCCH-HHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH-HHCC-CCCCEEEEECCCCCHHHHHHHHHHHH
T ss_conf 83999688868-999999999978-9989999799999999999-9618-89877999898899999999999999
No 445
>PRK07041 short chain dehydrogenase; Provisional
Probab=20.70 E-value=58 Score=13.19 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=41.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHH
Q ss_conf 79820799716654046799986166785599973577-676033213113447870899717-9658889999997
Q gi|254780465|r 130 RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNL 204 (469)
Q Consensus 130 ~~~~~~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~ 204 (469)
++|.+.|.++ |+.-|.|.+..|. ..+-+|++.+=+. +.....+. + ..+.+++.+.+| .+.+++++++++.
T Consensus 6 ~gK~~lITGg-s~GIG~aia~~la-~~Ga~V~i~~r~~~~l~~~~~~-~--~~~~~~~~~~~Dv~~~~~v~~~~~~~ 77 (240)
T PRK07041 6 NDQKVLVVGG-SSGIGLAAARAFA-ARGADVTIASRSRERLAAAARA-L--GGPRPVRTAALDITDEAAVDAFFAEA 77 (240)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHH-H--CCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 9998999577-8889999999999-8799999995988999999998-4--78886699984799999999999970
No 446
>PRK10538 3-hydroxy acid dehydrogenase; Provisional
Probab=20.64 E-value=58 Score=13.19 Aligned_cols=66 Identities=9% Similarity=0.168 Sum_probs=44.2
Q ss_pred EEEECCCCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHCCCEEECCCCEEEEEEC-CCHHHHHHHHHHHHC
Q ss_conf 799716654046799986166785599973577-676033213113447870899717-965888999999750
Q gi|254780465|r 135 TIVGATSGDTGAAAIKAFAGKKRINMYILFPEG-RISVVQQKQMTTSEASNINVIAVQ-SSFDDCQKIVKNLFS 206 (469)
Q Consensus 135 ~il~ATSGDTGsAa~~a~~~~~~i~v~vlyP~g-~vS~~Q~~qmtt~~~~Nv~~i~v~-G~FDDcq~~Vk~~f~ 206 (469)
.+++..|+--|.|.+..|.. .+-+|++..-.. +..++++ ..+++++.+.+| .+.++++.+++++..
T Consensus 3 vlVTGassGIG~a~A~~la~-~Ga~Vv~~~r~~~~l~~l~~-----~lg~~~~~~~~Dvsd~~~v~~~~~~~~~ 70 (248)
T PRK10538 3 VLVTGATAGFGECITRRFIQ-NGHKVIATGRRQERLQELKD-----ELGDNLYIAQLDVRNRAAIEEMLASLPA 70 (248)
T ss_pred EEEECCCCHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHH-----HHCCCEEEEEEECCCHHHHHHHHHHHHH
T ss_conf 99988866999999999998-79999999899999999999-----8488679999734888999999999999
No 447
>pfam08064 UME UME (NUC010) domain. This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1.
Probab=20.51 E-value=58 Score=13.17 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=40.9
Q ss_pred CCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6328610788898899877099989999999987515789989999999998630
Q gi|254780465|r 28 GLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHC 82 (469)
Q Consensus 28 GL~vP~~~p~~~~~~~~~~~~~sy~e~a~~il~~f~~~~i~~~~l~~ii~~ay~~ 82 (469)
|=++....||+..---..+..-.+++.|+....-|+ ...++++|..+++..+..
T Consensus 47 g~~is~~~pqI~a~L~saL~~~~L~~~al~~W~~fi-~~L~~~~l~~ll~~~~~~ 100 (107)
T pfam08064 47 GKHISSALPQIMACLQSALEIEELRSEALRCWHVFI-KSLDEEELGPLIDQTFAA 100 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHH
T ss_conf 888888899999999998177067898999999999-868999999899999999
No 448
>PRK07012 consensus
Probab=20.43 E-value=14 Score=17.47 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=43.1
Q ss_pred EECC-CHHHHHHHHHHHHCCC----CCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHH----HHHHHHH
Q ss_conf 6346-5788788667775089----87705872367633567753222010234556564200134013----7889998
Q gi|254780465|r 252 VPTG-NFGDIFAGYMAKMMGL----PIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSN----FERLLFE 322 (469)
Q Consensus 252 VPtG-NfGni~Ag~~Ak~MGL----PI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SN----fERllf~ 322 (469)
||+| .=|-.-+-.+|+.||+ ||+ -|-.+.||++-++-+ =|=+||=.+.+ .-+.+++
T Consensus 358 I~vGPGRGSaAGSLVaY~LgIT~vDPi~-------y~LLFERFLNpeR~s--------mPDIDiDF~~~rR~eVi~Yv~~ 422 (1173)
T PRK07012 358 VPVGPGRGSGAGSLVAYALGITDLDPLR-------YNLLFERFLNPERVS--------MPDFDIDFCQHGRDRVIQYVKE 422 (1173)
T ss_pred CEECCCCCCHHHHHHHHHHCCCCCCCCC-------CCCCHHHHCCCCCCC--------CCCCCCCCCCCCCHHHHHHHHH
T ss_conf 7226887703767999984474438422-------586378861667788--------9999865775452999999999
Q ss_pred HHCCCHHHHHHHHHHHCCCCC-------CCCCCHHHHHHHCC
Q ss_conf 709708999999875202651-------05520221100012
Q gi|254780465|r 323 ISGRNSLLVKEAFYSLENKKY-------FRIDSEHLQKMSLS 357 (469)
Q Consensus 323 l~~~d~~~v~~~m~~l~~~g~-------~~i~~~~l~~l~~~ 357 (469)
-||+|....-..+..++.++. +.++....+++.+.
T Consensus 423 kYG~d~VAqI~Tf~T~~ak~AiRDvgRvlg~~~~~~d~iaK~ 464 (1173)
T PRK07012 423 KYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKL 464 (1173)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC
T ss_conf 863021114666888999999999999858998888778621
No 449
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=20.37 E-value=58 Score=13.15 Aligned_cols=103 Identities=19% Similarity=0.176 Sum_probs=48.9
Q ss_pred EEEEEC--CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 899634--657887886677750898770587236763356775322201023455656420013401378899987097
Q gi|254780465|r 249 SFSVPT--GNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGR 326 (469)
Q Consensus 249 ~f~VPt--GNfGni~Ag~~Ak~MGLPI~kli~AtN~NdiL~rf~~tG~y~~~~~~~T~SpsMDI~v~SNfERllf~l~~~ 326 (469)
.|+.|| -.||.... =|.-+|+| |+|||.-- ++..+..|.. .... | .+.-+.+-|-.+. .
T Consensus 272 vfv~PS~~Egfglv~l--EAmA~G~P----VVat~vgG-~~Evv~~~~~----~~~~--~-----d~~~la~~l~~ll-~ 332 (398)
T cd03796 272 IFLNTSLTEAFCIAIV--EAASCGLL----VVSTRVGG-IPEVLPPDMI----LLAE--P-----DVESIVRKLEEAI-S 332 (398)
T ss_pred EEECCCCCCCCCHHHH--HHHHCCCC----EEECCCCC-CCCEEECCCE----EECC--C-----CHHHHHHHHHHHH-C
T ss_conf 2127654246667999--99983998----99888998-6113418936----8748--9-----9999999999997-6
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCEECCCHHH
Q ss_conf 089999998752026510552022110001213421388999999999998639598383399
Q gi|254780465|r 327 NSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAV 389 (469)
Q Consensus 327 d~~~v~~~m~~l~~~g~~~i~~~~l~~l~~~f~s~svsDeet~~~Ik~~y~~~gyiiDPHTAv 389 (469)
|+...++.++. + .++..+ ..|++.+.+.+.++|++ .+=-||-+-
T Consensus 333 ~~~~~~~~~~~----~--------r~~v~~-----~fsw~~ia~~~~~vY~~--vl~~~~~~~ 376 (398)
T cd03796 333 ILRTGKHDPWS----F--------HNRVKK-----MYSWEDVAKRTEKVYDR--ILQTPNLSL 376 (398)
T ss_pred CHHHHHHHHHH----H--------HHHHHH-----HCCHHHHHHHHHHHHHH--HHCCCCCCH
T ss_conf 99999999999----9--------999999-----69999999999999999--981899139
No 450
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=20.34 E-value=51 Score=13.55 Aligned_cols=46 Identities=22% Similarity=0.306 Sum_probs=23.1
Q ss_pred HCCCEECCCHHHHHH-----HHHH----HHHCCCCCEEEEECCCCCCCHHHHHHH
Q ss_conf 639598383399999-----9999----874799839999718843498889998
Q gi|254780465|r 378 KSNYLVDPHTAVGIH-----AALA----CRKSSSTPMVTLATAHPSKFPDTVKAA 423 (469)
Q Consensus 378 ~~gyiiDPHTAvG~~-----aa~~----~~~~~~~p~VvLATAHPaKFpe~V~~A 423 (469)
..-.++|.-|+.-.. ..+. +++-.+..-+++-|.||.-|++.....
T Consensus 118 ~dvIIIDSlS~l~~~~~~~~~~~~~~~~lk~l~s~gktIilTv~p~~~~e~~l~~ 172 (230)
T PRK08533 118 KDVVIIDSLSSLVSRDASEVQIRDLMAFFKRISSLNKVIILTANPKELPESVLLI 172 (230)
T ss_pred CCEEEEECCHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHH
T ss_conf 9899990531885167778999999999999985898899995633136245442
No 451
>KOG2419 consensus
Probab=20.32 E-value=25 Score=15.76 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCC
Q ss_conf 567878632861
Q gi|254780465|r 22 GLATDGGLYIPK 33 (469)
Q Consensus 22 Gla~DGGL~vP~ 33 (469)
+...+-||--|+
T Consensus 246 sis~~~gl~~~~ 257 (975)
T KOG2419 246 SISEVVGLNDQR 257 (975)
T ss_pred CCCCCCCCCCCC
T ss_conf 322223555654
No 452
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138 This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=20.08 E-value=59 Score=13.11 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=64.8
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCH-HHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCC-------
Q ss_conf 32861078889889987709998-999999998751----578998999999999863047667860477248-------
Q gi|254780465|r 29 LYIPKYIPRLSEKEIKDLRGLSY-QEIALFIFRLFI----GQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNA------- 96 (469)
Q Consensus 29 L~vP~~~p~~~~~~~~~~~~~sy-~e~a~~il~~f~----~~~i~~~~l~~ii~~ay~~f~~~~~~pl~~l~~------- 96 (469)
|=.-++=|.|+...|.-+.+.-- +-=|.+||.-++ ||| ..+.|.+-|.++...-... =||+-=+.+
T Consensus 7 LHL~~~~P~iTa~Fl~FL~~~A~G~AdALYILGDLFeaWIGDD-~~~~l~~~va~~~r~vsd~-GV~~YF~~GNRDFLiG 84 (241)
T TIGR01854 7 LHLSEERPDITALFLDFLREEARGKADALYILGDLFEAWIGDD-DPSALARSVAEAIRAVSDQ-GVPCYFMHGNRDFLIG 84 (241)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCHHHCEECCC-CCCHHHHHHHHHHHHHHCC-CEEEEEECCCCHHHHH
T ss_conf 4588246078999999987523340000221012000114689-7217999999999987328-9079840598515666
Q ss_pred -------------CCEEEEEC-------CCCCCCCCCCHHHH
Q ss_conf -------------82546621-------38981206823888
Q gi|254780465|r 97 -------------NEFLLELF-------HGPTLSFKDIAMQF 118 (469)
Q Consensus 97 -------------~~~vlELf-------HGPT~aFKD~a~q~ 118 (469)
+.-|++|| ||=|||=.|-|=|-
T Consensus 85 ~~Far~aG~~LLPD~~VidLYG~k~Ll~HGDtLCTdD~aYq~ 126 (241)
T TIGR01854 85 KRFAREAGMTLLPDESVIDLYGQKVLLMHGDTLCTDDEAYQA 126 (241)
T ss_pred HHHHHHHCCEECCCHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf 899997088107862465554882799537863020189999
No 453
>KOG1240 consensus
Probab=20.05 E-value=43 Score=14.08 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=7.2
Q ss_pred CCEECC-----CHHHHHHHH
Q ss_conf 959838-----339999999
Q gi|254780465|r 380 NYLVDP-----HTAVGIHAA 394 (469)
Q Consensus 380 gyiiDP-----HTAvG~~aa 394 (469)
-+++-| |+++|+-++
T Consensus 703 PlL~hPN~WIR~~~~~iI~~ 722 (1431)
T KOG1240 703 PLLCHPNLWIRRAVLGIIAA 722 (1431)
T ss_pred HHEECCHHHHHHHHHHHHHH
T ss_conf 03457249999999999999
Done!