RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus
Liberibacter asiaticus str. psy62]
(469 letters)
>gnl|CDD|107203 cd01560, Thr-synth_2, Threonine synthase catalyzes the final step
of threonine biosynthesis. The conversion of
O-phosphohomoserine into threonine and inorganic
phosphate is pyridoxal 5'-phosphate dependent. The
Thr-synth_1 CD includes members from higher plants,
cyanobacteria, archaebacteria and eubacterial groups.
This CD, Thr-synth_2, includes enzymes from fungi and
eubacterial groups, as well as, metazoan threonine
synthase-like proteins..
Length = 460
Score = 586 bits (1513), Expect = e-168
Identities = 221/460 (48%), Positives = 305/460 (66%), Gaps = 4/460 (0%)
Query: 2 KYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFRL 61
KY+STR + + F + +LSGLA DGGLY+P+ +P+LS +EI GLSYQE+A + L
Sbjct: 1 KYVSTRGGNPGVSFSEALLSGLAPDGGLYVPEELPKLSAEEIASWSGLSYQELAFEVLSL 60
Query: 62 FIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAE 121
FIG EI L+ +++R+Y FR+ + PL+QL N ++LELFHGPTL+FKD+A+QF+
Sbjct: 61 FIGDEIPEDDLKSLIDRAYSFFRHPDIAPLVQLGDNLYVLELFHGPTLAFKDMALQFLGR 120
Query: 122 LMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSE 181
L+++ L+ R+ ITI+ ATSGDTG+AAI+ F GK +++ +L+P+G +S +Q+ QMTT
Sbjct: 121 LLEYFLKRRNERITILVATSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLP 180
Query: 182 ASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIAL 241
A N++V+AV+ FDDCQ +VK LF+D F + LS NSINWARI+AQIVYYF + + L
Sbjct: 181 ADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSANSINWARILAQIVYYFYAYLQL 240
Query: 242 GSP--NRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP-E 298
+ FSVPTGNFG+I AGY AK MGLPI+KLI+ATNEND L R F G Y E
Sbjct: 241 LKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNENDVLRRFFKTGRYDRRE 300
Query: 299 IVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSF 358
+ +T SPAMDI SNFERLLF ++GR+ VK E + + E L+K+ F
Sbjct: 301 SLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDF 360
Query: 359 SAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPD 418
S+ S E+ I+ V E++ YL+DPHTAVG+ AA RKS TP V L+TAHP+KFP+
Sbjct: 361 SSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAAERVRKSPGTPGVVLSTAHPAKFPE 420
Query: 419 TVKAASGIVP-DCPISLEQMMRRPENCKVMNKNIDEIKKF 457
VK A G P + P LE + + + + + + +K
Sbjct: 421 AVKEALGEEPVELPEELEGLEDLEKRHEDLLADKELLKSH 460
>gnl|CDD|30844 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 344 bits (884), Expect = 3e-95
Identities = 149/466 (31%), Positives = 212/466 (45%), Gaps = 62/466 (13%)
Query: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
MKY+S R + F +L GL D GL++P P S +EI L GLSY E+A
Sbjct: 1 MKYVSLRCLKCGREFSQALLQGLCPDCGLFLPAEYPYFSLEEIDKLLGLSYPELAWRYLE 60
Query: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
L EI + L + Y A PL LN N ++ EL H PT SFKD M +
Sbjct: 61 LLPVGEIPAVSLGEGGTPLYKAP--ALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLV 118
Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
L + TI+ A+SG+TG A+ A+A + + +++L+P+G++S + QM T
Sbjct: 119 SLAKELG-----AKTILCASSGNTG-ASAAAYAARAGLKVFVLYPKGKVSPGKLAQMLTL 172
Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
A +VIAV +FDD Q++VK + LS +NSIN R+ Q Y F +
Sbjct: 173 GA---HVIAVDGNFDDAQELVKEAANR-----EGLLSAVNSINPYRLEGQKTYAFEIAEQ 224
Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRP--- 297
LG VP GN G++ A Y GLPI K+ A N N F G+Y
Sbjct: 225 LG-WKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEG 283
Query: 298 EIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLS 357
ET +PAMDI PSN+ER LF + L
Sbjct: 284 RETPETIAPAMDIGNPSNWERALFALRESGGL---------------------------- 315
Query: 358 FSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK---SSSTPMVTLATAHPS 414
A S E++ IK + E+ L++PH+AV + A L R+ +V + T H
Sbjct: 316 --AVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGL 373
Query: 415 KFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKK 460
KFPDTV+ A P L ++ P + + + +KK+I +
Sbjct: 374 KFPDTVEEA-------PAELAEIPELPLRVEDADL--EALKKYILQ 410
>gnl|CDD|37827 KOG2616, KOG2616, KOG2616, Pyridoxalphosphate-dependent
enzyme/predicted threonine synthase [Amino acid
transport and metabolism].
Length = 266
Score = 174 bits (441), Expect = 6e-44
Identities = 98/322 (30%), Positives = 154/322 (47%), Gaps = 68/322 (21%)
Query: 158 INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLS 217
++++IL P+GR S +Q+ QMTT N++V V+ +FD+CQ VK +F DV F
Sbjct: 1 VSVFILLPKGRCSPIQELQMTTVLDQNVHVFGVEGNFDECQDPVKTIFGDVEF------- 53
Query: 218 GINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277
+G P R KL+
Sbjct: 54 ---------------------AKMGLPIR----------------------------KLV 64
Query: 278 IATNENDTLVRMFDMGMY-RPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFY 336
IATNEND L R G Y E V T SPAMDI + SNFER+L+ ++G +S + +
Sbjct: 65 IATNENDILHRFVKTGDYELSEKVAATLSPAMDILVSSNFERVLWLLAGSDSQITRALMN 124
Query: 337 SLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALA 396
E ++ E +K+S F+++R S E+ IK + E ++Y++DPHTAV ++
Sbjct: 125 EFERTGSVQVPKELHEKLSEDFTSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYR 184
Query: 397 C--RKSSSTPMVTLATAHPSKFPDTVKAA--------SGIVPDCPISLEQMMRRPENCKV 446
+ S P + L+TAHP+KF + V AA + + P L +MRR +N
Sbjct: 185 QIDKTQPSIPYICLSTAHPAKFAEAVNAALSTPESPYNFVALVHPEELCTLMRREKNWMF 244
Query: 447 MNK-NIDEIKKFIKKRNMESKI 467
M + +I+++K+ I+ + +K
Sbjct: 245 MLRADIEDLKRQIESHLLNTKQ 266
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine..
Length = 244
Score = 132 bits (335), Expect = 2e-31
Identities = 57/202 (28%), Positives = 78/202 (38%), Gaps = 21/202 (10%)
Query: 89 TPLIQLN-------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGATS 141
TPL++L AN +L F PT SFKD + L + E + I+ +T
Sbjct: 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEE--EGKLPKGVIIESTG 58
Query: 142 GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIV 201
G+TG A A A + + I+ PEG S + QM A V+ V FDD +
Sbjct: 59 GNTGIALAAAAA-RLGLKCTIVMPEGA-SPEKVAQM---RALGAEVVLVPGDFDDAIALA 113
Query: 202 KNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNI-SFSVPTGNFGDI 260
K L + + VN N A I Q I + + VP G G+I
Sbjct: 114 KELAEEDPGAYYVN----QFDNPANIAGQGTIGL--EILEQLGGQKPDAVVVPVGGGGNI 167
Query: 261 FAGYMAKMMGLPIEKLIIATNE 282
A LP K+I E
Sbjct: 168 AGIARALKELLPNVKVIGVEPE 189
Score = 37.1 bits (87), Expect = 0.012
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 366 EDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK--SSSTPMVTLATAH 412
E+ I+ + + LV+P +A + AAL K +V + T
Sbjct: 196 EEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGKGKTVVVILTGG 244
>gnl|CDD|144031 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8,
cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 251
Score = 68.5 bits (168), Expect = 4e-12
Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 42/201 (20%)
Query: 89 TPLIQL-------NANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGA 139
TPL++L A +L LE + PT SFKD A + + T+V A
Sbjct: 8 TPLVRLLLLGGLGGARVYLKLESLN-PTGSFKDRGAANLLLRA------LEEGGKTVVEA 60
Query: 140 TSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSEASNIN-VIAVQSSFDDC 197
+SG+TG A A A + + + I+ PEG S + M A I V V +DD
Sbjct: 61 SSGNTGRAL--AAAAARLGLKVTIVVPEG-ASPGKLLLMRALGAEVILVVSDVGGDYDDA 117
Query: 198 QKIVKNLFSDVFFCHSVNLSGINSINWA--RIMAQIVYYFVSSIAL-------GSPNRNI 248
++ + + + L+G NS N I Y +I L G P+
Sbjct: 118 LELAEEAAEE------LALAGGNSYNIGDQYDPNVIAGYG--TIGLEILEQLGGVPDA-- 167
Query: 249 SFSVPTGNFGDIFAGYMAKMM 269
VP G G + AG +
Sbjct: 168 -VVVPVG-GGGLAAGIARGLK 186
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants..
Length = 324
Score = 64.2 bits (157), Expect = 8e-11
Identities = 60/219 (27%), Positives = 94/219 (42%), Gaps = 34/219 (15%)
Query: 107 PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGA--AAIKAFAGKKRINMYILF 164
PT SFKD M + E + A++G+T A AA A AG I +
Sbjct: 49 PTGSFKDRGM---TVAVSKAKELG--VKAVACASTGNTSASLAAYAARAG---IKCVVFL 100
Query: 165 PEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINW 224
P G ++ + Q A V+AV+ +FDD ++V+ L + + + LS NS+N
Sbjct: 101 PAG-KALGKLAQA---LAYGATVLAVEGNFDDALRLVRELAEE----NWIYLS--NSLNP 150
Query: 225 ARIMAQ--IVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMA----KMMGLPIE---K 275
R+ Q I + + P+ + VP GN G+I A + K +GL I+ +
Sbjct: 151 YRLEGQKTIAFEIAEQLGWEVPDYVV---VPVGNGGNITAIWKGFKELKELGL-IDRLPR 206
Query: 276 LIIATNEN-DTLVRMFDMGMYRPEIVMETTSPAMDIQIP 313
++ E +VR F G E V + A I+I
Sbjct: 207 MVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIG 245
>gnl|CDD|30381 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 32.4 bits (74), Expect = 0.30
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 18/101 (17%)
Query: 89 TPLIQLNANEFL--------LELFHGPTLSFKD-IAMQFI--AELMDHILEERDHYITIV 137
TPL++LN LE F+ P S KD IA+ I AE + TIV
Sbjct: 12 TPLVRLNRLSPGTGVEIYAKLESFN-PGGSVKDRIALYMIEDAEKRGLLKPGG----TIV 66
Query: 138 GATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMT 178
ATSG+TG A+ A K + I+ PE +S ++K +
Sbjct: 67 EATSGNTG-IALAMVAAAKGYRLIIVMPET-MSQERRKLLR 105
>gnl|CDD|38790 KOG3583, KOG3583, KOG3583, Uncharacterized conserved protein
[Function unknown].
Length = 279
Score = 30.1 bits (67), Expect = 1.2
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 10/122 (8%)
Query: 83 FRNAAVTPL-IQLNANEFLLELFHGPTLSFK-DIAMQFIAELMDHILEERDHYITIVGAT 140
R+ + +Q +E L G F + ++ D +E + +
Sbjct: 70 LRSHVLVTQRLQYEPDETLQRATEGRVPVFSHALVPDYLRTKPDPEMENEEGQL------ 123
Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200
D AAA A A K+I Y G ++ + + +E++ I + DD K+
Sbjct: 124 --DGEAAAKSADAAVKQIAAYNKNISGLLNHLSKVDREHTESAIEKPIQQTYNRDDTAKL 181
Query: 201 VK 202
V
Sbjct: 182 VA 183
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine..
Length = 291
Score = 30.2 bits (69), Expect = 1.4
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 17/76 (22%)
Query: 89 TPLIQLNA------NEFLLEL-FHGPTLSFKD-IAMQFIAELMDH-ILEERDHYITIVGA 139
TPL++LN E +L F P S KD IA+ I + +L+ TI+
Sbjct: 3 TPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGT---TIIEP 59
Query: 140 TSGDTG-----AAAIK 150
TSG+TG AA K
Sbjct: 60 TSGNTGIGLAMVAAAK 75
>gnl|CDD|37835 KOG2624, KOG2624, KOG2624, Triglyceride lipase-cholesterol esterase
[Lipid transport and metabolism].
Length = 403
Score = 30.0 bits (67), Expect = 1.4
Identities = 29/147 (19%), Positives = 52/147 (35%), Gaps = 27/147 (18%)
Query: 110 SFKDIAMQFIAELMDHILEERDHY-ITIVGATSGDTG--AAAIKAFAGKKRINMYIL--- 163
S+ ++ + ++D+ILE+ + VG + G T + K+I +I
Sbjct: 138 SWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAP 197
Query: 164 --FPEGRISVVQQKQMTTSEA---------------SNINVIAVQSSFDDCQKIVKNLFS 206
FP+ S++ + A SN+ + KI +L S
Sbjct: 198 AAFPKHIKSLLNKFLDPFLGAFSLLPLLFGRKEFLPSNLFIKKFARKICSGSKIFADLCS 257
Query: 207 DVFFCHSVNLSGINSINWARIMAQIVY 233
+ F L G NS NW + +
Sbjct: 258 NFLF----LLVGWNSNNWNTTLLPVYL 280
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 29.0 bits (66), Expect = 3.0
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 92 IQLNANEFLLELFHG---PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAA 148
I +E L + S M L + E Y+ G +S D A
Sbjct: 29 ILAALDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVHT-GRSSNDIVDTA 87
Query: 149 IKAFA 153
++
Sbjct: 88 LRLAL 92
>gnl|CDD|34959 COG5400, COG5400, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 205
Score = 28.4 bits (63), Expect = 4.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Query: 138 GATSGDTGAAAIKAFAGKKRINMYILFPEG 167
G TSG KAF N YIL EG
Sbjct: 62 GETSGGLAKVVEKAFQSYGLPNGYILGEEG 91
>gnl|CDD|144818 pfam01366, PRTP, Herpesvirus processing and transport protein. The
members of this family are associate with capsid
intermediates during packaging of the virus.
Length = 635
Score = 28.4 bits (64), Expect = 4.9
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 284 DTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKY 343
+ V++ + + R + T A + P F+ F I +NSL
Sbjct: 498 EEAVKLLNGFLARRRFLALVTWEAGNRGSPEAFDNHKF-I--KNSLYRH----------- 543
Query: 344 FRIDSEHLQKMSLSF 358
R+D EHL ++ F
Sbjct: 544 -RLDPEHLPSLTHQF 557
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.135 0.385
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,491,761
Number of extensions: 294967
Number of successful extensions: 837
Number of sequences better than 10.0: 1
Number of HSP's gapped: 817
Number of HSP's successfully gapped: 30
Length of query: 469
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 372
Effective length of database: 4,167,664
Effective search space: 1550371008
Effective search space used: 1550371008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)