RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62] (469 letters) >gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated. Length = 462 Score = 638 bits (1649), Expect = 0.0 Identities = 217/462 (46%), Positives = 302/462 (65%), Gaps = 4/462 (0%) Query: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60 MKYISTR + F + +L GLA DGGLY+P+ +P+LS +EI L GLSY E+A I Sbjct: 1 MKYISTRGNAPQVSFSEAVLQGLAPDGGLYVPEELPKLSAEEIDALLGLSYAELAFEILS 60 Query: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120 F+G +I L+ I+ R+Y F + A+ PL+QL+ N ++LELFHGPTL+FKD A+QF+A Sbjct: 61 AFVGDDIPEDDLKAIIARAYTTFDHPAIAPLVQLDDNLYVLELFHGPTLAFKDFALQFLA 120 Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180 +L++++L+ ITI+GATSGDTG+AA +AF GK + + IL+P+G++S VQ+KQMTT Sbjct: 121 QLLEYVLKGEK--ITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTL 178 Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 + NI+V+AV+ +FDDCQ +VK F+D + LS NSIN R++AQIVYYF + + Sbjct: 179 QGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSINIGRLLAQIVYYFYAYLQ 238 Query: 241 LG-SPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299 LG ++FSVP+GNFG+I AGY AK MGLPI++LI+ATNEND L R G+Y P Sbjct: 239 LGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRP 298 Query: 300 VMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFS 359 + T SPAMDI + SNFERLLF++ GR++ V+E LE K + + E L + FS Sbjct: 299 TVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFS 358 Query: 360 AKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDT 419 A S E+ + I+ V E+ YL+DPHTAV AA P V L+TAHP+KFP+ Sbjct: 359 AGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD-PGEPGVVLSTAHPAKFPEV 417 Query: 420 VKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKR 461 V+ A G P P +L + RP V+ + +K F+ + Sbjct: 418 VEEALGEEPPLPAALAGLEDRPLRSTVLPADFAALKAFLLEH 459 >gnl|CDD|161791 TIGR00260, thrC, threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model. Length = 328 Score = 187 bits (478), Expect = 4e-48 Identities = 116/383 (30%), Positives = 176/383 (45%), Gaps = 65/383 (16%) Query: 58 IFRLFIGQEIKSSK-LRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAM 116 ++R + K L D+ FR+ A+ + + N ++LELFH PTLSFKD M Sbjct: 1 VWRYREFLPVTPEKDLVDLGEGVTPLFRSPALVANVGIK-NLYVLELFHNPTLSFKDRGM 59 Query: 117 QFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQ 176 A + LE T++ A++G+TGAAA A+AGK + + IL+P G+IS + Sbjct: 60 ---AVALTKALE--LGNDTVLCASTGNTGAAAA-AYAGKAGVKVVILYPAGKIS---LGK 110 Query: 177 MTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFV 236 + + N V+A+ +FDD Q++VK LF D ++ L+ +NSI R+ Q Y F Sbjct: 111 LAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKE---ALGLNSVNSI-PYRLEGQKTYAFE 166 Query: 237 SSIALG--SPNRNISFSVPT-GNFGDIFAGYMAKMMG----LPIEKLIIATNENDTLVRM 289 + LG +P++ + VP GNFG I G+ K G LP+++ I A D + Sbjct: 167 AVEQLGWEAPDK-VVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAF 225 Query: 290 FDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFY-SLENKKYFRIDS 348 + G + P T S A+DI P+N+ER L E F S N Sbjct: 226 LESGQWEPIEDPATLSTAIDIGNPANWERAL------------ELFRRSNGN-------- 265 Query: 349 EHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTL 408 A+ S E++ IK + + Y V+PH+AV + A L + Sbjct: 266 -----------AEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKG------- 307 Query: 409 ATAHPSKFPDTVKAASGIVPDCP 431 TA P+ V A +G P Sbjct: 308 -TADPA--ERVVCALTGNGLKDP 327 >gnl|CDD|178182 PLN02569, PLN02569, threonine synthase. Length = 484 Score = 75.6 bits (186), Expect = 2e-14 Identities = 78/330 (23%), Positives = 139/330 (42%), Gaps = 69/330 (20%) Query: 107 PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPE 166 T SFKD+ M + ++ + + + + A++GDT AA + A+ I + P Sbjct: 161 HTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAA-LSAYCAAAGIPSIVFLPA 219 Query: 167 GRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWAR 226 +IS+ Q Q + A V+++ + FD C ++++ + ++ + + NS+N R Sbjct: 220 DKISIAQLVQPIANGA---LVLSIDTDFDGCMRLIREVTAE------LPIYLANSLNSLR 270 Query: 227 IMAQ------IVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGY----MAKMMGL--PIE 274 + Q I+ F + P+ I VP GN G+I+A Y M K +GL + Sbjct: 271 LEGQKTAAIEILQQFDWEV----PDWVI---VPGGNLGNIYAFYKGFKMCKELGLVDRLP 323 Query: 275 KLII--ATNENDTLVRMFDMG--MYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLL 330 +L+ A N N L R + G ++P T + A+ I P + +R ++ + N + Sbjct: 324 RLVCAQAANAN-PLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNG-I 381 Query: 331 VKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVG 390 V+EA + E + + A + M + PHT V Sbjct: 382 VEEA-----------TEEELMDAQAE---ADKTGM----------------FLCPHTGVA 411 Query: 391 IHAALACRKS----SSTPMVTLATAHPSKF 416 + A R S + V ++TAH KF Sbjct: 412 LAALKKLRASGVIGPTDRTVVVSTAHGLKF 441 >gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated. Length = 351 Score = 57.0 bits (137), Expect = 9e-09 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 28/183 (15%) Query: 89 TPLIQLN--ANEFLLELFH-----GPTLSFKDIAMQF-IAELMDHILEERDHYITIVGAT 140 TPLI L + E + L+ PT SFKD M +A+ + E ++ A+ Sbjct: 29 TPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAE------AVICAS 82 Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200 +G+T AAA A+A + + YI+ PEG++++ + Q A ++I++Q +FD+ K Sbjct: 83 TGNTSAAA-AAYATRAGLKAYIVIPEGKVALGKLAQAVMYGA---DIISIQGNFDEALKS 138 Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGS-PNRNISFSVPTGNFGD 259 V+ L +V L +NS+N R+ Q F LGS P+ ++P GN G+ Sbjct: 139 VRELAE----TEAVTL--VNSVNPYRLEGQKTAAFEICEQLGSAPD---VLAIPVGNAGN 189 Query: 260 IFA 262 I A Sbjct: 190 ISA 192 >gnl|CDD|180966 PRK07409, PRK07409, threonine synthase; Validated. Length = 353 Score = 55.6 bits (135), Expect = 3e-08 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 58/213 (27%) Query: 89 TPLIQLNANEFLLEL-----FHG--PTLSFKDIAMQF-IAELMDHILEERDHYITIVGAT 140 TPLI LL + + G PT SFKD M + + + + ++ A+ Sbjct: 32 TPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK------AVICAS 85 Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSSFDDCQ 198 +G+T A+A A+A + + ++L PEG+I++ + Q M +E +I + +FDD Sbjct: 86 TGNTSASA-AAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAE-----IIQIDGNFDDAL 139 Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQ------IVYYFVSSIALG-SPNRNISFS 251 +IV+ L + V L +NS+N RI Q IV ALG +P+ Sbjct: 140 EIVRELAEK----YPVTL--VNSVNPYRIEGQKTAAFEIVD------ALGDAPDY---HC 184 Query: 252 VPTGNFGDIFA---GY-----------MAKMMG 270 +P GN G+I A GY + +MMG Sbjct: 185 IPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMG 217 >gnl|CDD|180494 PRK06260, PRK06260, threonine synthase; Validated. Length = 397 Score = 54.9 bits (133), Expect = 5e-08 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 42/193 (21%) Query: 89 TPLIQLNANEFLLEL------FHG--PTLSFKDIAMQF---IA-EL-MDHILEERDHYIT 135 TPL + E L + G PT SFKD M A EL + T Sbjct: 68 TPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK----------T 117 Query: 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSS 193 + A++G+T +A++ A+A + + Y+L P G++++ + Q + ++ V+ V + Sbjct: 118 VACASTGNT-SASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAK-----VLEVDGN 171 Query: 194 FDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQ--IVYYFVSSIALGSPNRNISFS 251 FDD +V L + +NSIN R+ Q I + + P+R + Sbjct: 172 FDDALDMVVEL------AKEGKIYLLNSINPFRLEGQKTIGFEIADQLGWEVPDRVV--- 222 Query: 252 VPTGNFGDIFAGY 264 +P GN G+I A + Sbjct: 223 LPVGNAGNISAIW 235 >gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed. Length = 352 Score = 52.0 bits (124), Expect = 3e-07 Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 26/182 (14%) Query: 89 TPLIQL-NANEFLLELFHG------PTLSFKDIAMQFIAELMDHILEERDHYITIVGATS 141 TPLI L N ++ L +G PT SFKD M +M + + I+ A++ Sbjct: 29 TPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGM-----VMAVAKAKEEGSEAIICAST 83 Query: 142 GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIV 201 G+T A+A A+A + + I+ PEG+I+ ++ + A +I+++ +FDD K V Sbjct: 84 GNTSASA-AAYAARLGMKCIIVIPEGKIA---HGKLAQAVAYGAEIISIEGNFDDALKAV 139 Query: 202 KNLFSDVFFCHSVNLSGINSINWARIMAQIVYYF-VSSIALGSPNRNISFSVPTGNFGDI 260 +N+ ++ + L +NS+N RI Q F + +P+ ++P GN G+I Sbjct: 140 RNIAAE----EPITL--VNSVNPYRIEGQKTAAFEICDQLQRAPD---VLAIPVGNAGNI 190 Query: 261 FA 262 A Sbjct: 191 TA 192 >gnl|CDD|162219 TIGR01136, cysKM, cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. Length = 299 Score = 30.7 bits (70), Expect = 0.88 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 19/77 (24%) Query: 89 TPLIQLN------ANEFLLEL-FHGPTLSFKD-IAMQFI--AELMDHILEERDHYITIVG 138 TPL++LN L +L P+ S KD IA+ I AE +L+ D TI+ Sbjct: 8 TPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEK-RGLLKPGD---TIIE 63 Query: 139 ATSGDTG-----AAAIK 150 ATSG+TG AA K Sbjct: 64 ATSGNTGIALAMVAAAK 80 >gnl|CDD|149495 pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated. This domain is found in bacterial proteins of the SWF/SNF/SWI helicase family to the N-terminus of the SNF2 family N-terminal domain (pfam00176) and together with the Helicase conserved C-terminal domain (pfam00271). The function of the domain is not clear. Length = 376 Score = 30.3 bits (69), Expect = 1.1 Identities = 12/44 (27%), Positives = 22/44 (50%) Query: 327 NSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNS 370 +L K+ +Y L++ + ++ E L+K S R S ED+ Sbjct: 285 RALREKKKYYRLKSGSFLDLEEEELKKFSQLLEDLRLSKEDLGG 328 >gnl|CDD|162221 TIGR01139, cysK, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. Length = 298 Score = 30.0 bits (68), Expect = 1.3 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 19/71 (26%) Query: 89 TPLIQLN------ANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYI----TI 136 TPL++LN AN F+ LE + P+ S KD IA+ I + E+ + TI Sbjct: 8 TPLVRLNRIEGCNANVFVKLEGRN-PSGSVKDRIALNMIWD------AEKRGLLKPGKTI 60 Query: 137 VGATSGDTGAA 147 V TSG+TG A Sbjct: 61 VEPTSGNTGIA 71 >gnl|CDD|130174 TIGR01104, V_PPase, vacuolar-type H(+)-translocating pyrophosphatase. This model describes proton pyrophosphatases from eukaryotes (predominantly plants), archaea and bacteria. It is an integral membrane protein and is suggested to have about 15 membrane spanning domains. Proton translocating inorganic pyrophosphatase, like H(+)-ATPase, acidifies the vacuoles and is pivotal to the vacuolar secondary active transport systems in plants. Length = 697 Score = 29.4 bits (66), Expect = 2.2 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 14/99 (14%) Query: 185 INVIAVQSSFDD----CQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 I+ +A+ + F QK V N +F C +V L WA ++ V + +S A Sbjct: 315 ISWVALPTGFTIFNFGTQKEVSNW--QLFLCVAVGL-------WAGLLIGFVTEYYTSNA 365 Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIA 279 SP ++++ S TG ++ G + I IA Sbjct: 366 Y-SPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA 403 >gnl|CDD|184891 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase subunit A'' fusion protein; Provisional. Length = 509 Score = 29.0 bits (65), Expect = 2.5 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 322 EISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK-SN 380 E NS K FR+ +++++ + K S ++ +++ + E+ Sbjct: 117 EYYEENSNEDVLKVIDDVKKLGFRLPPSVIEEIAKAMKKKELSDDEYEEILRRIREEYER 176 Query: 381 YLVDPHTAVGIHAA 394 VDP+ AVGI AA Sbjct: 177 ARVDPYEAVGIVAA 190 >gnl|CDD|181054 PRK07591, PRK07591, threonine synthase; Validated. Length = 421 Score = 28.0 bits (63), Expect = 5.4 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 22/96 (22%) Query: 107 PTLSFKD----IAMQFIAELMDHILEERDHYITIVGATSGDTG--AAAIKAFAGKKRINM 160 PT SFKD +A+ EL T V S TG A ++ A A + ++ Sbjct: 116 PTHSFKDRVVSVALTAARELG----------FTTVACAS--TGNLANSVAAHAARAGLDS 163 Query: 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDD 196 + P + K + T ++AV ++DD Sbjct: 164 CVFIPAD---LEAGKIVGTL-VYGPTLVAVDGNYDD 195 >gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional. Length = 673 Score = 27.7 bits (61), Expect = 6.1 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Query: 5 STRNVDLSLGFCDT----ILSGLATDGGLYIPKYIPRLSEKEIKDL 46 + + DL LG T + + LA +GG Y +PR+ E+ I DL Sbjct: 320 TAKTADLFLGNAGTAVRPLTAALAVNGGEYRIHGVPRMHERPIGDL 365 >gnl|CDD|178682 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like; Provisional. Length = 1195 Score = 27.9 bits (62), Expect = 6.4 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%) Query: 398 RKSSSTPMVTL-ATAHPSKFPDTVKAASGIVPDCPISLEQMMRRP----ENCKVMNKNID 452 +K + P++ L ATA S D V+A G+V +C + Q RP K ++ Sbjct: 612 QKFPNIPVLALTATATASVKEDVVQAL-GLV-NC-VVFRQSFNRPNLWYSVVPKTKKCLE 668 Query: 453 EIKKFIKK 460 +I KFIK+ Sbjct: 669 DIDKFIKE 676 >gnl|CDD|183302 PRK11761, cysM, cysteine synthase B; Provisional. Length = 296 Score = 27.9 bits (63), Expect = 6.5 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 25/93 (26%) Query: 89 TPLIQL------NANEFLLEL-FHGPTLSFKD---IAMQFIAELMDHILEERDHYITIVG 138 TPL++L N L +L + P S KD ++M AE I T++ Sbjct: 13 TPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG----DTLIE 68 Query: 139 ATSGDTG-----AAAIKAFAGKKRINMYILFPE 166 ATSG+TG AAIK + M ++ PE Sbjct: 69 ATSGNTGIALAMIAAIKGY------RMKLIMPE 95 >gnl|CDD|161721 TIGR00123, cbiM, cobalamin biosynthesis protein CbiM. In Methanobacterium thermoautotrophicum, Archaeoglobus fulgidus, and Methanococcus jannaschii, a second homolog of cbiM is also found. These cbiM-related proteins appear to represent a distinct but less well-conserved orthologous group. Still more distant homologs include sll0383 from Synechocystis sp. and HI1621 from Haemophilus influenzae; the latter protein, from a species that does not synthesize cobalamin, is the most divergent member of the group. The functions of and relationships among the set of proteins homologous to cbiM have not been determined. Length = 214 Score = 27.5 bits (61), Expect = 7.7 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%) Query: 211 CHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYM 265 L ++ A ++ + Y V+S+ L ++F +P F +M Sbjct: 130 ACRAGLRRDVAVFLAAMLGDLATYVVTSVQLA-----LAFPIPHAGFTGSVVKFM 179 >gnl|CDD|163243 TIGR03383, urate_oxi, urate oxidase. Members of this protein family are urate oxidase, also called uricase. This protein contains two copies of the domain described by the uricase model pfam01014. In animals, this enzyme has been lost from primates and birds. Length = 282 Score = 27.2 bits (61), Expect = 9.5 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 13/53 (24%) Query: 302 ETTSPAMDIQIPSNFERLLFEISGRNSL----LVKEAFYSLENKKYFRIDSEH 350 ET SP+ +Q L+ + G+ L V+E S+ NK YF +D Sbjct: 213 ETYSPS--VQ------NTLYLM-GKAVLERFPEVEEVSLSMPNKHYFLVDLSP 256 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.135 0.385 Gapped Lambda K H 0.267 0.0790 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,529,147 Number of extensions: 492264 Number of successful extensions: 1138 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1123 Number of HSP's successfully gapped: 30 Length of query: 469 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 372 Effective length of database: 3,898,497 Effective search space: 1450240884 Effective search space used: 1450240884 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.4 bits)