RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (469 letters)



>gnl|CDD|181710 PRK09225, PRK09225, threonine synthase; Validated.
          Length = 462

 Score =  638 bits (1649), Expect = 0.0
 Identities = 217/462 (46%), Positives = 302/462 (65%), Gaps = 4/462 (0%)

Query: 1   MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
           MKYISTR     + F + +L GLA DGGLY+P+ +P+LS +EI  L GLSY E+A  I  
Sbjct: 1   MKYISTRGNAPQVSFSEAVLQGLAPDGGLYVPEELPKLSAEEIDALLGLSYAELAFEILS 60

Query: 61  LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
            F+G +I    L+ I+ R+Y  F + A+ PL+QL+ N ++LELFHGPTL+FKD A+QF+A
Sbjct: 61  AFVGDDIPEDDLKAIIARAYTTFDHPAIAPLVQLDDNLYVLELFHGPTLAFKDFALQFLA 120

Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
           +L++++L+     ITI+GATSGDTG+AA +AF GK  + + IL+P+G++S VQ+KQMTT 
Sbjct: 121 QLLEYVLKGEK--ITILGATSGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTL 178

Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
           +  NI+V+AV+ +FDDCQ +VK  F+D      + LS  NSIN  R++AQIVYYF + + 
Sbjct: 179 QGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSANSINIGRLLAQIVYYFYAYLQ 238

Query: 241 LG-SPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299
           LG      ++FSVP+GNFG+I AGY AK MGLPI++LI+ATNEND L R    G+Y P  
Sbjct: 239 LGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVATNENDVLTRFLKTGVYDPRP 298

Query: 300 VMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFS 359
            + T SPAMDI + SNFERLLF++ GR++  V+E    LE K  + +  E L  +   FS
Sbjct: 299 TVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFS 358

Query: 360 AKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDT 419
           A   S E+  + I+ V E+  YL+DPHTAV   AA         P V L+TAHP+KFP+ 
Sbjct: 359 AGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAAREYLD-PGEPGVVLSTAHPAKFPEV 417

Query: 420 VKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKR 461
           V+ A G  P  P +L  +  RP    V+  +   +K F+ + 
Sbjct: 418 VEEALGEEPPLPAALAGLEDRPLRSTVLPADFAALKAFLLEH 459


>gnl|CDD|161791 TIGR00260, thrC, threonine synthase.  Involved in threonine
           biosynthesis it catalyses the reaction
           O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
           ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
           the enzyme is distantly related to the serine/threonine
           dehydratases which are also pyridoxal-phosphate
           dependent enzymes. the pyridoxal-phosphate binding site
           is a Lys (K) residues present at residue 70 of the
           model.
          Length = 328

 Score =  187 bits (478), Expect = 4e-48
 Identities = 116/383 (30%), Positives = 176/383 (45%), Gaps = 65/383 (16%)

Query: 58  IFRLFIGQEIKSSK-LRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAM 116
           ++R      +   K L D+       FR+ A+   + +  N ++LELFH PTLSFKD  M
Sbjct: 1   VWRYREFLPVTPEKDLVDLGEGVTPLFRSPALVANVGIK-NLYVLELFHNPTLSFKDRGM 59

Query: 117 QFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQ 176
              A  +   LE      T++ A++G+TGAAA  A+AGK  + + IL+P G+IS     +
Sbjct: 60  ---AVALTKALE--LGNDTVLCASTGNTGAAAA-AYAGKAGVKVVILYPAGKIS---LGK 110

Query: 177 MTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFV 236
           +  +   N  V+A+  +FDD Q++VK LF D     ++ L+ +NSI   R+  Q  Y F 
Sbjct: 111 LAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKE---ALGLNSVNSI-PYRLEGQKTYAFE 166

Query: 237 SSIALG--SPNRNISFSVPT-GNFGDIFAGYMAKMMG----LPIEKLIIATNENDTLVRM 289
           +   LG  +P++ +   VP  GNFG I  G+  K  G    LP+++ I A    D +   
Sbjct: 167 AVEQLGWEAPDK-VVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAF 225

Query: 290 FDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFY-SLENKKYFRIDS 348
            + G + P     T S A+DI  P+N+ER L            E F  S  N        
Sbjct: 226 LESGQWEPIEDPATLSTAIDIGNPANWERAL------------ELFRRSNGN-------- 265

Query: 349 EHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTL 408
                      A+  S E++   IK +  +  Y V+PH+AV + A L   +         
Sbjct: 266 -----------AEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKG------- 307

Query: 409 ATAHPSKFPDTVKAASGIVPDCP 431
            TA P+     V A +G     P
Sbjct: 308 -TADPA--ERVVCALTGNGLKDP 327


>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase.
          Length = 484

 Score = 75.6 bits (186), Expect = 2e-14
 Identities = 78/330 (23%), Positives = 139/330 (42%), Gaps = 69/330 (20%)

Query: 107 PTLSFKDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPE 166
            T SFKD+ M  +   ++ + +     + +  A++GDT AA + A+     I   +  P 
Sbjct: 161 HTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAA-LSAYCAAAGIPSIVFLPA 219

Query: 167 GRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWAR 226
            +IS+ Q  Q   + A    V+++ + FD C ++++ + ++      + +   NS+N  R
Sbjct: 220 DKISIAQLVQPIANGA---LVLSIDTDFDGCMRLIREVTAE------LPIYLANSLNSLR 270

Query: 227 IMAQ------IVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGY----MAKMMGL--PIE 274
           +  Q      I+  F   +    P+  I   VP GN G+I+A Y    M K +GL   + 
Sbjct: 271 LEGQKTAAIEILQQFDWEV----PDWVI---VPGGNLGNIYAFYKGFKMCKELGLVDRLP 323

Query: 275 KLII--ATNENDTLVRMFDMG--MYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLL 330
           +L+   A N N  L R +  G   ++P     T + A+ I  P + +R ++ +   N  +
Sbjct: 324 RLVCAQAANAN-PLYRAYKSGWEEFKPVKANPTFASAIQIGDPVSIDRAVYALKESNG-I 381

Query: 331 VKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVG 390
           V+EA            + E +   +    A +  M                 + PHT V 
Sbjct: 382 VEEA-----------TEEELMDAQAE---ADKTGM----------------FLCPHTGVA 411

Query: 391 IHAALACRKS----SSTPMVTLATAHPSKF 416
           + A    R S     +   V ++TAH  KF
Sbjct: 412 LAALKKLRASGVIGPTDRTVVVSTAHGLKF 441


>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated.
          Length = 351

 Score = 57.0 bits (137), Expect = 9e-09
 Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 28/183 (15%)

Query: 89  TPLIQLN--ANEFLLELFH-----GPTLSFKDIAMQF-IAELMDHILEERDHYITIVGAT 140
           TPLI L   + E  + L+       PT SFKD  M   +A+  +   E       ++ A+
Sbjct: 29  TPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAE------AVICAS 82

Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200
           +G+T AAA  A+A +  +  YI+ PEG++++ +  Q     A   ++I++Q +FD+  K 
Sbjct: 83  TGNTSAAA-AAYATRAGLKAYIVIPEGKVALGKLAQAVMYGA---DIISIQGNFDEALKS 138

Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGS-PNRNISFSVPTGNFGD 259
           V+ L        +V L  +NS+N  R+  Q    F     LGS P+     ++P GN G+
Sbjct: 139 VRELAE----TEAVTL--VNSVNPYRLEGQKTAAFEICEQLGSAPD---VLAIPVGNAGN 189

Query: 260 IFA 262
           I A
Sbjct: 190 ISA 192


>gnl|CDD|180966 PRK07409, PRK07409, threonine synthase; Validated.
          Length = 353

 Score = 55.6 bits (135), Expect = 3e-08
 Identities = 61/213 (28%), Positives = 97/213 (45%), Gaps = 58/213 (27%)

Query: 89  TPLIQLNANEFLLEL-----FHG--PTLSFKDIAMQF-IAELMDHILEERDHYITIVGAT 140
           TPLI       LL +     + G  PT SFKD  M   + +  +   +       ++ A+
Sbjct: 32  TPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGAK------AVICAS 85

Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSSFDDCQ 198
           +G+T A+A  A+A +  +  ++L PEG+I++  + Q  M  +E     +I +  +FDD  
Sbjct: 86  TGNTSASA-AAYAARAGLKAFVLIPEGKIALGKLAQAVMYGAE-----IIQIDGNFDDAL 139

Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQ------IVYYFVSSIALG-SPNRNISFS 251
           +IV+ L       + V L  +NS+N  RI  Q      IV       ALG +P+      
Sbjct: 140 EIVRELAEK----YPVTL--VNSVNPYRIEGQKTAAFEIVD------ALGDAPDY---HC 184

Query: 252 VPTGNFGDIFA---GY-----------MAKMMG 270
           +P GN G+I A   GY           + +MMG
Sbjct: 185 IPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMG 217


>gnl|CDD|180494 PRK06260, PRK06260, threonine synthase; Validated.
          Length = 397

 Score = 54.9 bits (133), Expect = 5e-08
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 42/193 (21%)

Query: 89  TPLIQLNANEFLLEL------FHG--PTLSFKDIAMQF---IA-EL-MDHILEERDHYIT 135
           TPL +    E  L +        G  PT SFKD  M      A EL +           T
Sbjct: 68  TPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGVK----------T 117

Query: 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISV--VQQKQMTTSEASNINVIAVQSS 193
           +  A++G+T +A++ A+A +  +  Y+L P G++++  + Q  +  ++     V+ V  +
Sbjct: 118 VACASTGNT-SASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAK-----VLEVDGN 171

Query: 194 FDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQ--IVYYFVSSIALGSPNRNISFS 251
           FDD   +V  L           +  +NSIN  R+  Q  I +     +    P+R +   
Sbjct: 172 FDDALDMVVEL------AKEGKIYLLNSINPFRLEGQKTIGFEIADQLGWEVPDRVV--- 222

Query: 252 VPTGNFGDIFAGY 264
           +P GN G+I A +
Sbjct: 223 LPVGNAGNISAIW 235


>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed.
          Length = 352

 Score = 52.0 bits (124), Expect = 3e-07
 Identities = 52/182 (28%), Positives = 90/182 (49%), Gaps = 26/182 (14%)

Query: 89  TPLIQL-NANEFLLELFHG------PTLSFKDIAMQFIAELMDHILEERDHYITIVGATS 141
           TPLI L N ++ L    +G      PT SFKD  M     +M     + +    I+ A++
Sbjct: 29  TPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGM-----VMAVAKAKEEGSEAIICAST 83

Query: 142 GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIV 201
           G+T A+A  A+A +  +   I+ PEG+I+     ++  + A    +I+++ +FDD  K V
Sbjct: 84  GNTSASA-AAYAARLGMKCIIVIPEGKIA---HGKLAQAVAYGAEIISIEGNFDDALKAV 139

Query: 202 KNLFSDVFFCHSVNLSGINSINWARIMAQIVYYF-VSSIALGSPNRNISFSVPTGNFGDI 260
           +N+ ++      + L  +NS+N  RI  Q    F +      +P+     ++P GN G+I
Sbjct: 140 RNIAAE----EPITL--VNSVNPYRIEGQKTAAFEICDQLQRAPD---VLAIPVGNAGNI 190

Query: 261 FA 262
            A
Sbjct: 191 TA 192


>gnl|CDD|162219 TIGR01136, cysKM, cysteine synthases.  This model discriminates
           cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
           from cystathionine beta-synthase, a protein found
           primarily in eukaryotes and carrying a C-terminal CBS
           domain lacking from this protein. Bacterial proteins
           lacking the CBS domain but otherwise showing
           resemblamnce to cystathionine beta-synthases and
           considerable phylogenetic distance from known cysteine
           synthases were excluded from the seed and score below
           the trusted cutoff.
          Length = 299

 Score = 30.7 bits (70), Expect = 0.88
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 19/77 (24%)

Query: 89  TPLIQLN------ANEFLLEL-FHGPTLSFKD-IAMQFI--AELMDHILEERDHYITIVG 138
           TPL++LN          L +L    P+ S KD IA+  I  AE    +L+  D   TI+ 
Sbjct: 8   TPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEK-RGLLKPGD---TIIE 63

Query: 139 ATSGDTG-----AAAIK 150
           ATSG+TG      AA K
Sbjct: 64  ATSGNTGIALAMVAAAK 80


>gnl|CDD|149495 pfam08455, SNF2_assoc, Bacterial SNF2 helicase associated.  This
           domain is found in bacterial proteins of the SWF/SNF/SWI
           helicase family to the N-terminus of the SNF2 family
           N-terminal domain (pfam00176) and together with the
           Helicase conserved C-terminal domain (pfam00271). The
           function of the domain is not clear.
          Length = 376

 Score = 30.3 bits (69), Expect = 1.1
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 327 NSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNS 370
            +L  K+ +Y L++  +  ++ E L+K S      R S ED+  
Sbjct: 285 RALREKKKYYRLKSGSFLDLEEEELKKFSQLLEDLRLSKEDLGG 328


>gnl|CDD|162221 TIGR01139, cysK, cysteine synthase A.  This model distinguishes
           cysteine synthase A (CysK) from cysteine synthase B
           (CysM). CysM differs in having a broader specificity
           that also allows the use of thiosulfate to produce
           cysteine thiosulfonate.
          Length = 298

 Score = 30.0 bits (68), Expect = 1.3
 Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 19/71 (26%)

Query: 89  TPLIQLN------ANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYI----TI 136
           TPL++LN      AN F+ LE  + P+ S KD IA+  I +       E+   +    TI
Sbjct: 8   TPLVRLNRIEGCNANVFVKLEGRN-PSGSVKDRIALNMIWD------AEKRGLLKPGKTI 60

Query: 137 VGATSGDTGAA 147
           V  TSG+TG A
Sbjct: 61  VEPTSGNTGIA 71


>gnl|CDD|130174 TIGR01104, V_PPase, vacuolar-type H(+)-translocating
           pyrophosphatase.  This model describes proton
           pyrophosphatases from eukaryotes (predominantly plants),
           archaea and bacteria. It is an integral membrane protein
           and is suggested to have about 15 membrane spanning
           domains. Proton translocating inorganic pyrophosphatase,
           like H(+)-ATPase, acidifies the vacuoles and is pivotal
           to the vacuolar secondary active transport systems in
           plants.
          Length = 697

 Score = 29.4 bits (66), Expect = 2.2
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 14/99 (14%)

Query: 185 INVIAVQSSFDD----CQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
           I+ +A+ + F       QK V N    +F C +V L       WA ++   V  + +S A
Sbjct: 315 ISWVALPTGFTIFNFGTQKEVSNW--QLFLCVAVGL-------WAGLLIGFVTEYYTSNA 365

Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIA 279
             SP ++++ S  TG   ++  G       + I    IA
Sbjct: 366 Y-SPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFAIA 403


>gnl|CDD|184891 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase
           subunit A'' fusion protein; Provisional.
          Length = 509

 Score = 29.0 bits (65), Expect = 2.5
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 322 EISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK-SN 380
           E    NS            K  FR+    +++++ +   K  S ++   +++ + E+   
Sbjct: 117 EYYEENSNEDVLKVIDDVKKLGFRLPPSVIEEIAKAMKKKELSDDEYEEILRRIREEYER 176

Query: 381 YLVDPHTAVGIHAA 394
             VDP+ AVGI AA
Sbjct: 177 ARVDPYEAVGIVAA 190


>gnl|CDD|181054 PRK07591, PRK07591, threonine synthase; Validated.
          Length = 421

 Score = 28.0 bits (63), Expect = 5.4
 Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 22/96 (22%)

Query: 107 PTLSFKD----IAMQFIAELMDHILEERDHYITIVGATSGDTG--AAAIKAFAGKKRINM 160
           PT SFKD    +A+    EL            T V   S  TG  A ++ A A +  ++ 
Sbjct: 116 PTHSFKDRVVSVALTAARELG----------FTTVACAS--TGNLANSVAAHAARAGLDS 163

Query: 161 YILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDD 196
            +  P     +   K + T       ++AV  ++DD
Sbjct: 164 CVFIPAD---LEAGKIVGTL-VYGPTLVAVDGNYDD 195


>gnl|CDD|183343 PRK11861, PRK11861, bifunctional prephenate
           dehydrogenase/3-phosphoshikimate
           1-carboxyvinyltransferase; Provisional.
          Length = 673

 Score = 27.7 bits (61), Expect = 6.1
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 5   STRNVDLSLGFCDT----ILSGLATDGGLYIPKYIPRLSEKEIKDL 46
           + +  DL LG   T    + + LA +GG Y    +PR+ E+ I DL
Sbjct: 320 TAKTADLFLGNAGTAVRPLTAALAVNGGEYRIHGVPRMHERPIGDL 365


>gnl|CDD|178682 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
           Provisional.
          Length = 1195

 Score = 27.9 bits (62), Expect = 6.4
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 398 RKSSSTPMVTL-ATAHPSKFPDTVKAASGIVPDCPISLEQMMRRP----ENCKVMNKNID 452
           +K  + P++ L ATA  S   D V+A  G+V +C +   Q   RP           K ++
Sbjct: 612 QKFPNIPVLALTATATASVKEDVVQAL-GLV-NC-VVFRQSFNRPNLWYSVVPKTKKCLE 668

Query: 453 EIKKFIKK 460
           +I KFIK+
Sbjct: 669 DIDKFIKE 676


>gnl|CDD|183302 PRK11761, cysM, cysteine synthase B; Provisional.
          Length = 296

 Score = 27.9 bits (63), Expect = 6.5
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 25/93 (26%)

Query: 89  TPLIQL------NANEFLLEL-FHGPTLSFKD---IAMQFIAELMDHILEERDHYITIVG 138
           TPL++L        N  L +L  + P  S KD   ++M   AE    I        T++ 
Sbjct: 13  TPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG----DTLIE 68

Query: 139 ATSGDTG-----AAAIKAFAGKKRINMYILFPE 166
           ATSG+TG      AAIK +       M ++ PE
Sbjct: 69  ATSGNTGIALAMIAAIKGY------RMKLIMPE 95


>gnl|CDD|161721 TIGR00123, cbiM, cobalamin biosynthesis protein CbiM.  In
           Methanobacterium thermoautotrophicum, Archaeoglobus
           fulgidus, and Methanococcus jannaschii, a second homolog
           of cbiM is also found. These cbiM-related proteins
           appear to represent a distinct but less well-conserved
           orthologous group. Still more distant homologs include
           sll0383 from Synechocystis sp. and HI1621 from
           Haemophilus influenzae; the latter protein, from a
           species that does not synthesize cobalamin, is the most
           divergent member of the group. The functions of and
           relationships among the set of proteins homologous to
           cbiM have not been determined.
          Length = 214

 Score = 27.5 bits (61), Expect = 7.7
 Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 5/55 (9%)

Query: 211 CHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYM 265
                L    ++  A ++  +  Y V+S+ L      ++F +P   F      +M
Sbjct: 130 ACRAGLRRDVAVFLAAMLGDLATYVVTSVQLA-----LAFPIPHAGFTGSVVKFM 179


>gnl|CDD|163243 TIGR03383, urate_oxi, urate oxidase.  Members of this protein
           family are urate oxidase, also called uricase. This
           protein contains two copies of the domain described by
           the uricase model pfam01014. In animals, this enzyme has
           been lost from primates and birds.
          Length = 282

 Score = 27.2 bits (61), Expect = 9.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 13/53 (24%)

Query: 302 ETTSPAMDIQIPSNFERLLFEISGRNSL----LVKEAFYSLENKKYFRIDSEH 350
           ET SP+  +Q        L+ + G+  L     V+E   S+ NK YF +D   
Sbjct: 213 ETYSPS--VQ------NTLYLM-GKAVLERFPEVEEVSLSMPNKHYFLVDLSP 256


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.321    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0790    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,529,147
Number of extensions: 492264
Number of successful extensions: 1138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1123
Number of HSP's successfully gapped: 30
Length of query: 469
Length of database: 5,994,473
Length adjustment: 97
Effective length of query: 372
Effective length of database: 3,898,497
Effective search space: 1450240884
Effective search space used: 1450240884
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)