RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus
Liberibacter asiaticus str. psy62]
         (469 letters)



>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate,
           beta-family, monomer, lyase; HET: PLP; 2.70A
           {Saccharomyces cerevisiae} SCOP: c.79.1.1
          Length = 514

 Score =  494 bits (1273), Expect = e-140
 Identities = 207/509 (40%), Positives = 299/509 (58%), Gaps = 42/509 (8%)

Query: 1   MKYISTRNVDL-SLGFCDTILSGLATDGGLYIPKYIPRLSEKEI-KDLRGLSYQEIALFI 58
             Y STR+    ++ F + I+ GLATDGGL+IP  IP++ +  +  D   LS+Q++A  I
Sbjct: 6   QVYRSTRSSSPKTISFEEAIIQGLATDGGLFIPPTIPQVDQATLFNDWSKLSFQDLAFAI 65

Query: 59  FRLFIGQ-EIKSSKLRDIVNRSYHCFRNAAVTPLIQL----NANEFLLELFHGPTLSFKD 113
            RL+I Q EI  + L+D++ RSY  FR+  VTPL+Q       N  +LELFHGPT +FKD
Sbjct: 66  MRLYIAQEEIPDADLKDLIKRSYSTFRSDEVTPLVQNVTGDKENLHILELFHGPTYAFKD 125

Query: 114 IAMQFIAELMDHILEE--------RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFP 165
           +A+QF+  L ++ L+             IT+VGATSGDTG+AAI    GKK ++++IL+P
Sbjct: 126 VALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYP 185

Query: 166 EGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWA 225
            GRIS +Q++QMTT    N+  ++V  +FD+CQ IVK +F D  F    N+  +NSINWA
Sbjct: 186 TGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNSINWA 245

Query: 226 RIMAQIVYYFVSSIAL--GSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEN 283
           RI+AQ+ YYF S      G  ++ + F VP+GNFGDI AGY AK MGLPIEKL IATNEN
Sbjct: 246 RILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEN 305

Query: 284 DTLVRMFDMGMY-RPEIVMETTSPAMDIQIPSNFERLLFEISG---------RNSLLVKE 333
           D L R    G+Y R + V  T SPAMDI I SNFERLL+ ++          +   +V  
Sbjct: 306 DILDRFLKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNN 365

Query: 334 AFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKS----NYLVDPHTAV 389
            F  L+    F++D   ++  S  F+++R S E+ +  IK + E S    +Y++DPHTAV
Sbjct: 366 WFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPHTAV 425

Query: 390 GIHAA---LACRKSSSTPMVTLATAHPSKFPDTVKAASGIV-------PDCPISLEQMMR 439
           G+ A    +A     S   ++L+TAHP+KF D V  A              P  L+++  
Sbjct: 426 GVCATERLIAKDNDKSIQYISLSTAHPAKFADAVNNALSGFSNYSFEKDVLPEELKKLST 485

Query: 440 RPENCKVM-NKNIDEIKKFIKKRNMESKI 467
             +  K +   +++ +K  I++   + K+
Sbjct: 486 LKKKLKFIERADVELVKNAIEEELAKMKL 514


>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A
           {Escherichia coli} SCOP: c.79.1.1
          Length = 428

 Score =  320 bits (820), Expect = 6e-88
 Identities = 148/459 (32%), Positives = 226/459 (49%), Gaps = 36/459 (7%)

Query: 1   MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
           MK  + ++ +  + F   +  GL  + GL+ P  +P  S  EI ++  L +   +  I  
Sbjct: 1   MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60

Query: 61  LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
            FIG EI    L + V  ++         P+  + ++   LELFHGPTL+FKD   +F+A
Sbjct: 61  AFIGDEIPQEILEERVRAAFAFPA-----PVANVESDVGCLELFHGPTLAFKDFGGRFMA 115

Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
           +++ HI    D  +TI+ ATSGDTGAA   AF G   + + IL+P G+IS +Q+K   T 
Sbjct: 116 QMLTHI--AGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCT- 172

Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
              NI  +A+   FD CQ +VK  F D     ++ L+  NSIN +R++AQI YYF +   
Sbjct: 173 LGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQ 232

Query: 241 LGSPNRN-ISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299
           L    RN +  SVP+GNFGD+ AG +AK +GLP+++ I ATN NDT+ R    G + P+ 
Sbjct: 233 LPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKA 292

Query: 300 VMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFS 359
              T S AMD+  P+N+ R+            +   + L+   Y  +D E  Q+      
Sbjct: 293 TQATLSNAMDVSQPNNWPRVEEL--------FRRKIWQLKELGYAAVDDETTQQT----- 339

Query: 360 AKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDT 419
                           L++  Y  +PH AV   A            + L TAHP+KF ++
Sbjct: 340 -------------MRELKELGYTSEPHAAVAYRALRDQLN-PGEYGLFLGTAHPAKFKES 385

Query: 420 VKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFI 458
           V+A  G   D P  L +    P     +  +   ++K +
Sbjct: 386 VEAILGETLDLPKELAERADLPLLSHNLPADFAALRKLM 424


>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
           S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
           thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
          Length = 486

 Score =  171 bits (433), Expect = 4e-43
 Identities = 71/400 (17%), Positives = 141/400 (35%), Gaps = 67/400 (16%)

Query: 89  TPLIQLN---------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGA 139
           + L              + ++       T SFKD+ M  +   ++ + + +   + +  A
Sbjct: 131 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 190

Query: 140 TSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199
           ++GDT  AA+ A+     I   +  P  +IS+ Q  Q     A+   V+++ + FD C K
Sbjct: 191 STGDTS-AALSAYCASAGIPSIVFLPANKISMAQLVQP---IANGAFVLSIDTDFDGCMK 246

Query: 200 IVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGD 259
           +++           + +   NS+N  R+  Q                +    VP GN G+
Sbjct: 247 LIR------EITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDW-VIVPGGNLGN 299

Query: 260 IFAGYMA------KMMGLPIEKLIIATNEN-DTLVRMFDMGMY--RPEIVMETTSPAMDI 310
           I+A Y          +   I +++ A   N + L   +  G    +P     T + A+ I
Sbjct: 300 IYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQI 359

Query: 311 QIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNS 370
             P + +R ++ +   N ++ +              + E +  M+               
Sbjct: 360 GDPVSIDRAVYALKKCNGIVEEAT------------EEELMDAMAQ-------------- 393

Query: 371 VIKSVLEKSNYLVDPHTAVGIHAALACRKSS----STPMVTLATAHPSKFPDTV-KAASG 425
                 + +   + PHT V + A    R       +   V ++TAH  KF  +     S 
Sbjct: 394 -----ADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSN 448

Query: 426 IVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMES 465
            +PD            +        +D +K ++    + S
Sbjct: 449 AIPDMACRFSNPPVDVKA--DFGAVMDVLKSYLGSNTLTS 486


>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
           thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
          Length = 351

 Score = 96.4 bits (239), Expect = 1e-20
 Identities = 62/362 (17%), Positives = 120/362 (33%), Gaps = 63/362 (17%)

Query: 89  TPLIQLNANEFLLEL---------FHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVG 138
           TPLI L   E   +             PT SFKD      +++              +  
Sbjct: 29  TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKA------VEGGAQAVAC 82

Query: 139 ATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQ 198
           A++G+T A+A  A+A +  I   ++ P G +      ++  S      ++ V+ +FDD  
Sbjct: 83  ASTGNTAASAA-AYAARAGILAIVVLPAGYV---ALGKVAQSLVHGARIVQVEGNFDDAL 138

Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFG 258
           ++ + L              +NS+N  R+  Q    F   +     +     ++P GN G
Sbjct: 139 RLTQKLTEAFPVAL------VNSVNPHRLEGQKTLAF--EVVDELGDAPHYHALPVGNAG 190

Query: 259 DIFAGYMAKMMGLPIEKLIIATNENDTLVRMFD-MGMYRPEIVMETTSPAMDIQIPSNFE 317
           +I A +M       + K                 + + RP    ET + A+ I  P++++
Sbjct: 191 NITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQ 250

Query: 318 RLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLE 377
             +                                        +  + E++    + +  
Sbjct: 251 GAVRAKEESG------------------------------GVIEAVTDEEILFAYRYLAR 280

Query: 378 KSNYLVDPHTAVGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPIS 433
           +     +P +A  +       +       + +V   T H  K P T +  + + P  P  
Sbjct: 281 EEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAERVAELPPPVPAR 340

Query: 434 LE 435
           LE
Sbjct: 341 LE 342


>1v7c_A Threonine synthase; PLP-dependent enzyme, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, lyase; HET: HEY; 2.00A {Thermus thermophilus}
           SCOP: c.79.1.1 PDB: 1uin_A* 1uim_A*
          Length = 351

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 64/365 (17%), Positives = 109/365 (29%), Gaps = 61/365 (16%)

Query: 89  TPLIQLNANEFLLEL---------FHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGA 139
           TPLI L   E   +             PT SFKD  M         + +  +     V  
Sbjct: 29  TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLA------VSKAVEGGAQAVAC 82

Query: 140 TSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199
            S    AA+  A+A +  I   ++ P G +      ++  S      ++ V+ +FDD  +
Sbjct: 83  ASTGNTAASAAAYAARAGILAIVVLPAGYV---ALGKVAQSLVHGARIVQVEGNFDDALR 139

Query: 200 IVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGD 259
           + + L              +NS+N  R+  Q    F     LG      +  V     G+
Sbjct: 140 LTQKLTEAFPVAL------VNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNA--GN 191

Query: 260 IFAGYMAKMMGLPIEKLIIATNENDTLVRMFD-MGMYRPEIVMETTSPAMDIQIPSNFER 318
           I A +M       + K                 + + RP    ET + A+ I  P++++ 
Sbjct: 192 ITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQG 251

Query: 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK 378
                                  K                 A R               +
Sbjct: 252 A-------------------VRAKEESGGVIEAVTDEEILFAYRYLAR-----------E 281

Query: 379 SNYLVDPHTAVGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPISL 434
                +P +A  +       +       + +V   T H  K P T +  + + P  P  L
Sbjct: 282 EGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAERVAELPPPVPARL 341

Query: 435 EQMMR 439
           E +  
Sbjct: 342 EAVAA 346


>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
           PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
          Length = 360

 Score = 77.3 bits (189), Expect = 6e-15
 Identities = 58/364 (15%), Positives = 109/364 (29%), Gaps = 58/364 (15%)

Query: 89  TPLIQLN--ANEFLLELF-----HGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGAT 140
           TPLI     + +    +        PT SFKD      + +              ++ A+
Sbjct: 39  TPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA------LAHGQRAVLCAS 92

Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200
           +G+T A+A    A        ++        +   ++  +      +I +  +FDDC ++
Sbjct: 93  TGNTSASAAAYAARAGITCAVLIPQG----KIAMGKLAQAVMHGAKIIQIDGNFDDCLEL 148

Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDI 260
            + + +D           +NS+N  RI  Q    F     LG+     +  V        
Sbjct: 149 ARKMAADFPTISL-----VNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITA 203

Query: 261 FAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLL 320
           +     +   L +   +              + +  P    ET + A+ I  P+++   +
Sbjct: 204 YWKGYTEYHQLGLIDKLPRMLGTQAA-GAAPLVLGEPVSHPETIATAIRIGSPASWTSAV 262

Query: 321 FEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSN 380
                        A    + +     D E L    L                  V     
Sbjct: 263 E------------AQQQSKGRFLAASDEEILAAYHL------------------VARVEG 292

Query: 381 YLVDPHTAVGIHAALACRKSSSTP----MVTLATAHPSKFPDTVKAASGIVPDCPISLEQ 436
             V+P +A  I   L             +V   T +  K PDT       V   P+    
Sbjct: 293 VFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTALKDMPSVSPVPVDPVA 352

Query: 437 MMRR 440
           ++ +
Sbjct: 353 VVEK 356


>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
           {Aquifex aeolicus}
          Length = 352

 Score = 65.3 bits (158), Expect = 3e-11
 Identities = 63/366 (17%), Positives = 119/366 (32%), Gaps = 63/366 (17%)

Query: 89  TPLIQLN---------ANEFL-LELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVG 138
           TPLI+ +            +L  E  + PT SFKD  M                   ++ 
Sbjct: 31  TPLIEADNLARAIGFKGKIYLKYEGLN-PTGSFKDRGMTLAISKA-----VEAGKRAVIC 84

Query: 139 ATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQ 198
           A++G+T A+A  A+A +  +  Y+L P+G    V   +++ +      V+A+Q +FDD  
Sbjct: 85  ASTGNTSASAA-AYAARAGLRAYVLLPKGA---VAIGKLSQAMIYGAKVLAIQGTFDDAL 140

Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTG-NF 257
            IV+ +  +           +NS+N  RI  Q    F     LG         V    N 
Sbjct: 141 NIVRKIGENFPVEI------VNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNI 194

Query: 258 GDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFE 317
              + G+  K+     +   +             +    P    +T + A+ I  P +++
Sbjct: 195 TAYWKGF--KIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWK 252

Query: 318 RLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLE 377
                                      +   E   K+         S  ++    K +  
Sbjct: 253 S------------------------ALKAAQESGGKI------DAVSDSEILYAYKLIAS 282

Query: 378 KSNYLVDPHTAVGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPIS 433
                 +P +A  +   +   +         +    T +  K PDT           P  
Sbjct: 283 TEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDTAIKVCEEPITVPPD 342

Query: 434 LEQMMR 439
            +++++
Sbjct: 343 FDEVVK 348


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 64.2 bits (156), Expect = 5e-11
 Identities = 79/564 (14%), Positives = 145/564 (25%), Gaps = 248/564 (43%)

Query: 49  LSYQEIALFIFRLFI--GQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHG 106
           LS+  +      L +       +S+L++  N+                +      EL   
Sbjct: 11  LSHGSLE---HVLLVPTASFFIASQLQEQFNKIL----PEPTEGFAADDEPTTPAELV-- 61

Query: 107 PTLSFKDIAMQFIAEL--------MDHILE------ERD-------HYITIVGATSGDTG 145
               F    + +++ L         D +L       E         H   +      +  
Sbjct: 62  --GKF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH--ALAAKLLQEND 113

Query: 146 AAAIKAFAGKKRI--NMYILFPEGRISVVQQKQMTTSEAS---------NINVIAV---Q 191
              +K     K +  N           ++ ++       S         N  ++A+   Q
Sbjct: 114 TTLVK----TKELIKNYI------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163

Query: 192 SSFDDC-----------QKIVKNLFS--------------DVFFCHSVNLSGINSINW-- 224
            + DD              +V +L                D     +    G+N + W  
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT---QGLNILEWLE 220

Query: 225 -------------ARI------MAQIVYYFVSSIALG-SPNRNISFSVPTGNFGDIFAGY 264
                          I      + Q+ +Y V++  LG +P          G       G 
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP----------GELRSYLKGA 270

Query: 265 MAKMMGLPIEKLIIAT---------NENDTLVRMFDMGMYR-----------PEIVME-- 302
                GL +  + IA          +    +  +F +G  R           P I+ +  
Sbjct: 271 TGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIG-VRCYEAYPNTSLPPSILEDSL 328

Query: 303 -----TTSPAMDIQ-----------------IPSNFERLLFEIS---GRNSLLVK---EA 334
                  SP + I                  +P+  +++  EIS   G  +L+V    ++
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQV--EISLVNGAKNLVVSGPPQS 385

Query: 335 FYSLENKKYFRIDSEHLQKMSLS---------FSAKRAS-----------------MEDV 368
            Y L            L+K             FS +R                   +   
Sbjct: 386 LYGLNL---------TLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLPVASPFHSHLLVPA 435

Query: 369 NSVIKSVLEKSNYLVDP--------HTAVGIHAALACRKSSS------TPMVT------- 407
           + +I   L K+N   +          T  G  + L  R  S          +        
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDG--SDL--RVLSGSISERIVDCIIRLPVKWE 491

Query: 408 LATAHPSK----F-PDTVKAASGI 426
             T   +     F P     ASG+
Sbjct: 492 TTTQFKATHILDFGPG---GASGL 512



 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 62/405 (15%), Positives = 102/405 (25%), Gaps = 171/405 (42%)

Query: 86  AAVTPLIQLNANEFLLELFHG--------PTLSFKDIAMQFIAELMDHILEERDHYITIV 137
            +  PL           L HG        PT SF      FIA  +      ++ +  I+
Sbjct: 4   YSTRPLT----------LSHGSLEHVLLVPTASF------FIASQL------QEQFNKIL 41

Query: 138 GATS----GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSS 193
              +     D          GK     ++ +      V    + +               
Sbjct: 42  PEPTEGFAADDEPTTPAELVGK-----FLGY------VSSLVEPSK-----------VGQ 79

Query: 194 FDDCQKIVKNLFSDVFFC----HSV--NLSGINSINWARIMAQIVYYFVSSIALGSPNRN 247
           FD    +    F + +      H++   L   N     +    I  Y  + I    P   
Sbjct: 80  FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139

Query: 248 IS----F-SVPTGNFG--DIFAGYMAKMMGLPIEKLIIATNEN--DTLVRMFDMGMYRPE 298
            S    F +V  GN     IF G      G           ++  + L  ++    Y   
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGG-----QG---------NTDDYFEELRDLYQT--YHV- 182

Query: 299 IVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSF 358
                                          LV +              +E L    L  
Sbjct: 183 -------------------------------LVGDLIKFS---------AETLS--ELIR 200

Query: 359 SAKRASMEDVNSVIKSVLEK--SNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKF 416
           +   A             EK  +  L +      I   L                +PS  
Sbjct: 201 TTLDA-------------EKVFTQGL-N------ILEWLE---------------NPSNT 225

Query: 417 PDTVKAASGIVP-DCP-ISLEQMMRRPENCKVMNKNIDEIKKFIK 459
           PD     S  +P  CP I + Q+       K++     E++ ++K
Sbjct: 226 PDKDYLLS--IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268



 Score = 45.3 bits (107), Expect = 3e-05
 Identities = 70/338 (20%), Positives = 128/338 (37%), Gaps = 109/338 (32%)

Query: 63   IGQEI-KSSKL-RDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
            +G ++ K+SK  +D+ NR+ + F++     ++ +  N         P     ++ + F  
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN--------PV----NLTIHFGG 1678

Query: 121  ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRIN----MYILFPE-GRISVVQ-- 173
            E    I   R++Y  ++  T  D      K F   K IN     Y    E G +S  Q  
Sbjct: 1679 EKGKRI---RENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSEKGLLSATQFT 1732

Query: 174  QKQMTTSEASNINVIAVQSSFDDCQKIVKNLF-SDVFFC-HSV-------NLSGINSINW 224
            Q  +T  E         +++F+D +   K L  +D  F  HS+       +L+ + SI  
Sbjct: 1733 QPALTLME---------KAAFEDLKS--KGLIPADATFAGHSLGEYAALASLADVMSI-- 1779

Query: 225  ARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEND 284
               + ++V+Y   ++ +  P   +  S    N+G                  +IA N   
Sbjct: 1780 -ESLVEVVFYRGMTMQVAVPRDELGRS----NYG------------------MIAIN--- 1813

Query: 285  TLVRMFDMGMYRP-EIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKY 343
                        P  +    +  A+   +    ER    +  R   LV+   Y++EN++Y
Sbjct: 1814 ------------PGRVAASFSQEALQYVV----ER----VGKRTGWLVEIVNYNVENQQY 1853

Query: 344  -----FR-IDSE-------HLQKMSLSFSAKRASMEDV 368
                  R +D+         LQK+ +    K  S+E+V
Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891


>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
           c.79.1.1 PDB: 1pwh_A* 1pwe_A*
          Length = 372

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 41/318 (12%), Positives = 90/318 (28%), Gaps = 59/318 (18%)

Query: 89  TPLI-------QLNANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGA 139
           TP+            + +L ++    P+ SFK      F           +      V +
Sbjct: 47  TPIRDSMALSKMAGTSVYLKMDSAQ-PSGSFKIRGIGHFCKRW------AKQGCAHFVCS 99

Query: 140 TSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQ 198
           ++G+ G AA  A+A ++  +   I+ P           +   +        V    D+  
Sbjct: 100 SAGNAGMAA--AYAARQLGVPATIVVPGT----TPALTIERLKNEGATCKVVGELLDEAF 153

Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFG 258
           ++ K L  +      +        +                 L      I+ SV  G   
Sbjct: 154 ELAKALAKNNPGWVYIP----PFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLL 209

Query: 259 DIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFER 318
                 + +     +  + + T    +       G  +   + + TS A  + + +    
Sbjct: 210 CGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAG--KLVSLPKITSVAKALGVKTVGS- 266

Query: 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK 378
                             +L+  +   I SE              S ++  + I+  ++ 
Sbjct: 267 -----------------QALKLFQEHPIFSE------------VISDQEAVAAIEKFVDD 297

Query: 379 SNYLVDPHTAVGIHAALA 396
              LV+P     + A  +
Sbjct: 298 EKILVEPACGAALAAVYS 315


>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
           regulation, pyridoxal phosphate, isoleucine
           biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP:
           c.79.1.1 d.58.18.2 d.58.18.2
          Length = 514

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 29/241 (12%)

Query: 86  AAVTPLIQLNA------NEFLLEL-FHGPTLSFKD-IAMQFIAELMDHILEERDHYITIV 137
           A VTPL ++        N  L++     P  SFK   A   +A L      E      ++
Sbjct: 29  AQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGL-----TEEQKAHGVI 83

Query: 138 GATSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDD 196
            A++G+       AF+  +  +   I+ P          ++         V+   ++FD+
Sbjct: 84  TASAGNHAQGV--AFSSARLGVKALIVMPTA----TADIKVDAVRGFGGEVLLHGANFDE 137

Query: 197 CQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGN 256
            +     L     F        +   +   ++A      +  +   +    +   VP G 
Sbjct: 138 AKAKAIELSQQQGFTW------VPPFDHPMVIAGQGTLALELLQQDAHLDRV--FVPVGG 189

Query: 257 FGDIFA-GYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSN 315
            G       + K +   I+ + +   ++  L    D G       +   +  + ++   +
Sbjct: 190 GGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGD 249

Query: 316 F 316
            
Sbjct: 250 E 250


>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
           HET: PLP; 2.00A {Aeropyrum pernix K1} SCOP: c.79.1.1
          Length = 389

 Score = 42.1 bits (98), Expect = 3e-04
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 14/159 (8%)

Query: 83  FRNAAVTPLIQLNANEFL-------LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYI 134
           F     TPL++              LE ++  +LS KD  A++ I+ L   + +      
Sbjct: 91  FERGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGS---- 146

Query: 135 TIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSF 194
            +  ATS + G A   +   +       ++  G      +       A  I      S+ 
Sbjct: 147 LVADATSSNFGVAL--SAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204

Query: 195 DDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVY 233
               +++K+  ++ F   +   +  N     R  A+ ++
Sbjct: 205 HLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIF 243


>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
           defensive protein, jasmonic acid pathway; HET: LLP 15P;
           2.35A {Solanum lycopersicum}
          Length = 366

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 39/339 (11%), Positives = 88/339 (25%), Gaps = 65/339 (19%)

Query: 72  LRDIVN-RSYHCFRNAAVTPLIQLN-------ANEFLLELFHGPTLSFKD-IAMQFIAEL 122
           L DI+    Y        +PL            N ++         SFK   A   ++ L
Sbjct: 46  LVDILASPVYDVAIE---SPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNL 102

Query: 123 MDHILEERDHYITIVGATSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSE 181
               L++      ++ A++G+       A AG++      I+ P     +          
Sbjct: 103 SREELDK-----GVITASAGNHAQGV--ALAGQRLNCVAKIVMPTTTPQIKIDAVRALGG 155

Query: 182 ASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIAL 241
              +       +     ++ +                         + + +         
Sbjct: 156 DVVLYGKTFDEAQTHALELSEKDGLKYIPPFDDPGVIKGQGTIGTEINRQL--------- 206

Query: 242 GSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEN-DTLVRMFDMGMYRPEIV 300
                  +  +P G  G I           P  K+I        ++      G       
Sbjct: 207 ---KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSN 263

Query: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360
           ++T +  + + +   +     +      +LV                             
Sbjct: 264 VDTFADGVAVALVGEYTFAKCQELIDGMVLVAN--------------------------- 296

Query: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK 399
                + +++ IK V ++   +++   AV I  A A  +
Sbjct: 297 -----DGISAAIKDVYDEGRNILETSGAVAIAGAAAYCE 330


>1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type II of
           PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
           SCOP: c.79.1.1 PDB: 1m54_A*
          Length = 435

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 31/228 (13%)

Query: 89  TPLIQLN---------ANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYITIV 137
           TP++++N                E F+    S KD I+++ I +       +     TI+
Sbjct: 109 TPMVRINKIGKKFGLKCELLAKCEFFN-AGGSVKDRISLRMIEDAERDGTLKPGD--TII 165

Query: 138 GATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEA------SNINVIAVQ 191
             TSG+TG     A A   R    I+    ++S  +   +    A      +N    + +
Sbjct: 166 EPTSGNTGIGL--ALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPE 223

Query: 192 SSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFS 251
           S      ++   + +        N S  N +      A  +         G  +  +   
Sbjct: 224 SHVGVAWRLKNEIPNSHILDQYRNAS--NPLAHYDTTADEILQQCD----GKLDMLV--- 274

Query: 252 VPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299
              G  G I           P  ++I    E   L    ++       
Sbjct: 275 ASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT 322


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
            acid synthase, acyl-carrier-protein, beta-ketoacyl
            reductase, beta-ketoacyl synthase, dehydratase; 4.00A
            {Saccharomyces cerevisiae}
          Length = 1688

 Score = 35.6 bits (81), Expect = 0.028
 Identities = 72/346 (20%), Positives = 128/346 (36%), Gaps = 100/346 (28%)

Query: 107  PTLSFKDIAMQFIAELMDHILEERDHYI-----------------TIVGATSGDTGAAAI 149
            P ++  +  +QF+ EL +   + R   +                  +V   S D   A +
Sbjct: 722  PVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQV 781

Query: 150  KAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVF 209
            +    + R N+ + FPE +    Q KQ+  +E        ++   D  + IV   F++V 
Sbjct: 782  EI---QPRANIQLDFPELK-PYKQVKQIAPAE--------LEGLLDLERVIVVTGFAEVG 829

Query: 210  FCHSV------------NLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNF 257
               S             +L G   + W  IM  I Y+          N N+         
Sbjct: 830  PWGSARTRWEMEAFGEFSLEGCVEMAW--IMGFISYH----------NGNLK-------- 869

Query: 258  GDIFAGYMAKMMGLPI-EKLIIATNENDTL----VRMFDMGM---YRPE--------IVM 301
            G  + G++      P+ +K + A  E   L    +R+ +  +   Y PE        IV 
Sbjct: 870  GRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVE 929

Query: 302  ETTSP-AMDIQIPSNFERL------LFEI--SGRNSL-LVKEAFYSLENKKYFRIDSEHL 351
            E   P     +    F+        +FEI  +G  S+ L+K A  +L   K  R D    
Sbjct: 930  EDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGA--TLYIPKALRFDRLVA 987

Query: 352  QKMSLSFSAKRASM-EDVNS--------VIKSVLEK--SNYLVDPH 386
             ++   ++AK   + +D+ S        V+ SV+E   ++ + DP+
Sbjct: 988  GQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPY 1033



 Score = 29.4 bits (65), Expect = 1.6
 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 22/89 (24%)

Query: 130 RDHYITIVGATSGDTGAAAIKAF--AGKKRINMYILFPEGRISVVQQKQMTT-------- 179
           +D Y+ I GA  G  GA  ++     G K     ++    R S    KQ+T         
Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAK-----VVVTTSRFS----KQVTDYYQSIYAK 525

Query: 180 --SEASNINVIAV-QSSFDDCQKIVKNLF 205
             ++ S + V+   Q S  D + +++ ++
Sbjct: 526 YGAKGSTLIVVPFNQGSKQDVEALIEFIY 554


>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D-
            structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB:
            1i6v_D* 2gho_D
          Length = 1265

 Score = 35.4 bits (81), Expect = 0.031
 Identities = 55/434 (12%), Positives = 121/434 (27%), Gaps = 44/434 (10%)

Query: 64   GQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELM 123
            G+ + +  + + V              LIQ++  +    L      +F  + M+  A L+
Sbjct: 618  GRILFARIVGEAVGDEKVAQE------LIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLL 671

Query: 124  DHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEAS 183
            D +        T  G  +   G         K+R          +I    +    T    
Sbjct: 672  DALKYYGFTLSTTSGIIT--IGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRER 729

Query: 184  NINVIAVQSSFDDC--QKIVKNLFSDVFFCHSVNLSGINS-INWARIMAQIVYYFVSSIA 240
               VI + +   +   Q +  N   +  F     ++   +  N  +I        +    
Sbjct: 730  YDQVIQLWTETTEKVTQAVFNNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKP 789

Query: 241  LGSPNRNIS--------------FSVPTGNFGDI-------FAGYMAKMMGLPIEKLIIA 279
             G                      S      G          +GY+ + +     ++++ 
Sbjct: 790  SGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVR 849

Query: 280  TNENDTL----VRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAF 335
              +  T     V +F M      + +   S            R +  + GR     +   
Sbjct: 850  EADCGTTKYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEAL-GRRLEEGRYLS 908

Query: 336  YSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAAL 395
                +      ++  ++++ +       +   V              V    AVG+ AA 
Sbjct: 909  LEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGVVAAE 968

Query: 396  ACRKSSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIK 455
            +      T + T+ T H            G+     +      RRP+   V+++    ++
Sbjct: 969  SI-GEPGTQL-TMRTFHTGGVAVGTDITQGLPRVIELF---EARRPKAKAVISEIDGVVR 1023

Query: 456  KFIKKRNMESKIEP 469
              I++      +  
Sbjct: 1024 --IEEGEDRLSVFV 1035


>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon lyase,
           open twisted alpha/beta; HET: PLP; 2.00A {Williopsis
           saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
          Length = 341

 Score = 35.1 bits (80), Expect = 0.035
 Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 17/125 (13%)

Query: 89  TPLIQLN---------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGA 139
           +P+  LN          N +         L+F    ++ +  ++  I+E    ++  +G 
Sbjct: 16  SPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGG 75

Query: 140 TSGDTGAAAIKAFAGKKRINMYILFPEG-------RISVVQQKQMTTSEASNINVIAVQS 192
              +         A K      ++  +        +    +   +  S     +V  ++ 
Sbjct: 76  RQSNQTRMVAAL-AAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIED 134

Query: 193 SFDDC 197
            FD  
Sbjct: 135 GFDIG 139


>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
           thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
          Length = 322

 Score = 33.3 bits (75), Expect = 0.11
 Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 13/161 (8%)

Query: 89  TPLIQLNA------NEFLLEL-FHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGAT 140
           TPL+ LN            +L    P  S KD I    I++     L +      ++  T
Sbjct: 16  TPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGES-VLIEPT 74

Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200
           SG+TG      F    +    I+     +S  ++  +       +     +       K 
Sbjct: 75  SGNTGVGLA--FTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKA 132

Query: 201 VKNLFS--DVFFCHSVNLSGINSINWARIMAQIVYYFVSSI 239
            + L    + +            I++     +I       I
Sbjct: 133 EEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKI 173


>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
           protein structure initiative, P nysgrc; 2.35A
           {Streptomyces avermitilis}
          Length = 590

 Score = 30.5 bits (68), Expect = 0.87
 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%)

Query: 110 SFKDIAMQFIAELMDHILEERDHYITI-VGATSGDTGAAAIKAFAGKKRINMYILFPEGR 168
           SF + +   + EL   + EE    + + VG       A            N   +   GR
Sbjct: 61  SFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGR 120

Query: 169 ISVVQQKQM 177
           +++   K  
Sbjct: 121 VALTFAKHH 129


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 22/43 (51%)

Query: 332 KEAFYSLENKKYFRIDSEHLQKMSLSF----SAK----RASME 366
           K+A      KK        LQ  SL      SA     +A+ME
Sbjct: 19  KQAL-----KK--------LQA-SLKLYADDSAPALAIKATME 47



 Score = 27.7 bits (60), Expect = 5.3
 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 13/39 (33%)

Query: 373 KSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTL-AT 410
           K  L+K            + A+L      S P + + AT
Sbjct: 19  KQALKK------------LQASLKLYADDSAPALAIKAT 45


>1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR
           {Homo sapiens} SCOP: f.1.4.1 PDB: 1zy3_A 1o0l_A
          Length = 178

 Score = 29.5 bits (66), Expect = 1.6
 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 21/118 (17%)

Query: 188 IAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRN 247
           +   S+     ++   LF                 NW R++A   + F +++   S N+ 
Sbjct: 69  VTPGSAQQRFTQVSDELFQG-------------GPNWGRLVA--FFVFGAALCAESVNKE 113

Query: 248 ISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTS 305
           +         G +   +M   +   +   I ++        ++  G       +   +
Sbjct: 114 ME-----VLVGQV-QEWMVAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLREGN 165


>1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo
           sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A
           1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A*
           1ysn_A* 2o1y_A* 2yxj_A* 1g5j_A
          Length = 218

 Score = 29.2 bits (65), Expect = 2.0
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 21/104 (20%)

Query: 188 IAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRN 247
           I   +++   +++V  LF D              +NW RI+A   + F  ++ + S ++ 
Sbjct: 114 ITPGTAYQSFEQVVNELFRD-------------GVNWGRIVA--FFSFGGALCVESVDKE 158

Query: 248 ISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFD 291
           +             A +MA  +   +E  I      DT V ++ 
Sbjct: 159 MQ------VLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG 196


>3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex,
           apoptosis, alternative splicing, membrane,
           mitochondrion, nucleus, transmembrane; 1.78A {Homo
           sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A*
          Length = 158

 Score = 28.7 bits (64), Expect = 2.8
 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 21/104 (20%)

Query: 191 QSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISF 250
            +++   +++V  LF D              +NW RI+A   + F  ++ + S ++ +  
Sbjct: 66  GTAYQSFEQVVNELFRD-------------GVNWGRIVA--FFSFGGALCVESVDKEMQV 110

Query: 251 SVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGM 294
            V         A +MA  +   +E  I      DT V ++    
Sbjct: 111 LV------SRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNA 148


>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
           histolytica hm-1} PDB: 3bm5_A*
          Length = 343

 Score = 28.7 bits (63), Expect = 3.0
 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 24/233 (10%)

Query: 89  TPLIQLN-----------ANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYIT 135
           TPL++L+               + LE F+ P  S KD +    + + +          + 
Sbjct: 24  TPLVELHGVTEHPRIKKGTRILVKLEYFN-PMSSVKDRVGFNIVYQAIKD--GRLKPGME 80

Query: 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFD 195
           I+ +TSG+TG A  +A A         +     +      +   +E              
Sbjct: 81  IIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAI 140

Query: 196 DCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTG 255
           +    +       +F  +   +  N+        +I                       G
Sbjct: 141 EEVNKMIKENPGKYFVANQFGNPDNTAAHHYTANEIWEDT--------DGEVDIVVSAVG 192

Query: 256 NFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308
             G +              K+I    E   ++     G +  + +     P +
Sbjct: 193 TSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDI 245


>3bzm_A Menaquinone-specific isochorismate synthase; isomerase, menaquinone
           biosynthesis; HET: CIT; 1.95A {Escherichia coli} SCOP:
           d.161.1.1 PDB: 2eua_A* 3bzn_A
          Length = 431

 Score = 28.4 bits (63), Expect = 4.0
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 91  LIQLNANEFLLELFHGPTLSF--KDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAA 148
           L + +    L +L     ++   +D+A QFIA         R+ Y    G  S       
Sbjct: 327 LNKADDVICLHQLQPTAAVAGLPRDLARQFIARHEPF---TREWYAGSAGYLSLQQSEFC 383

Query: 149 I 149
           +
Sbjct: 384 V 384


>3gfh_A Ethanolamine utilization protein EUTL; bacterial mircocompartment,
           shell protein, structural protein; 2.20A {Escherichia
           coli} PDB: 3i87_A 3i82_A
          Length = 225

 Score = 28.3 bits (63), Expect = 4.1
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 119 IAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMT 178
            A  +   L      + ++ A S D    A  A    K+  + +++     +        
Sbjct: 24  FARELK--LPPHIRSLGLISADSDDVTYIA--ADEATKQAMVEVVYGRSLYAGAAHGPSP 79

Query: 179 TSEASNI-----NVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN 223
           T+    I     N   V++  D     ++N  +  +   + + + +  + 
Sbjct: 80  TAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQDTAFLAHVV 129


>3gse_A Menaquinone-specific isochorismate synthase; MENF,yersinia pestis
           CO92, YPO2528, csgid, isomerase; 2.28A {Yersinia pestis}
          Length = 458

 Score = 27.8 bits (61), Expect = 4.9
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 91  LIQLNANEFLLELFHGPTLSF--KDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAA 148
           L + +  + L  L     ++   ++ A QFIA+        R  Y    G  S      +
Sbjct: 348 LSRASDTDCLQRLQPTAAVAGLPREAARQFIAKHELF---SRGWYAGSAGYLSLKRTEFS 404

Query: 149 I 149
           +
Sbjct: 405 V 405


>2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein,
           structural genomics, PSI, protein structure initiative;
           HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2
          Length = 159

 Score = 27.8 bits (62), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 449 KNIDEIKKFIKKRNMESKIE 468
              +EIKK +  R M SK+E
Sbjct: 133 NIKEEIKKLVNSRIMHSKLE 152


>2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel,
           hydrolase; 1.84A {Bacillus SP}
          Length = 610

 Score = 27.7 bits (61), Expect = 6.1
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 41  KEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNA 86
             +K + GLS  +IA+F           ++++ +I       FRN 
Sbjct: 149 SLLKKVGGLSKLDIAMFCLTA-----TNNNQVDEIAEEIMQ-FRNE 188


>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis,
           pentose shunt, structural genomics; 1.55A {Mycobacterium
           tuberculosis}
          Length = 283

 Score = 27.5 bits (60), Expect = 6.1
 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)

Query: 437 MMRRP---ENCKVMNKNIDEIKKFIKK 460
           + R+P    N K MN N  E    ++K
Sbjct: 23  VSRKPLIAGNWK-MNLNHYEAIALVQK 48


>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
           conformational change, cysteine-modified, G-protein
           hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
           2ht6_A*
          Length = 192

 Score = 27.3 bits (59), Expect = 7.0
 Identities = 14/78 (17%), Positives = 28/78 (35%)

Query: 287 VRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRI 346
           + +  +G     +     S +        F+    E S      VKE F  +  +   R 
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174

Query: 347 DSEHLQKMSLSFSAKRAS 364
           DS+   +  L++  ++ S
Sbjct: 175 DSKEKNERRLAYQKRKES 192


>3gg7_A Uncharacterized metalloprotein; structural genomics, unknown
           function, plasmid, PSI-2, protein structure initiative;
           1.50A {Deinococcus radiodurans}
          Length = 254

 Score = 26.9 bits (58), Expect = 9.6
 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 5/44 (11%)

Query: 23  LATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFI----FRLF 62
           L  DG   +P  +  + E  +  +  +   E+   +     RL 
Sbjct: 200 LELDGQAALPWDVKSVVEG-LSKIWQIPASEVERIVKENVSRLL 242


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.321    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,950,752
Number of extensions: 187291
Number of successful extensions: 847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 819
Number of HSP's successfully gapped: 54
Length of query: 469
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 373
Effective length of database: 3,365,806
Effective search space: 1255445638
Effective search space used: 1255445638
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.2 bits)