RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62] (469 letters) >1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, monomer, lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1 Length = 514 Score = 494 bits (1273), Expect = e-140 Identities = 207/509 (40%), Positives = 299/509 (58%), Gaps = 42/509 (8%) Query: 1 MKYISTRNVDL-SLGFCDTILSGLATDGGLYIPKYIPRLSEKEI-KDLRGLSYQEIALFI 58 Y STR+ ++ F + I+ GLATDGGL+IP IP++ + + D LS+Q++A I Sbjct: 6 QVYRSTRSSSPKTISFEEAIIQGLATDGGLFIPPTIPQVDQATLFNDWSKLSFQDLAFAI 65 Query: 59 FRLFIGQ-EIKSSKLRDIVNRSYHCFRNAAVTPLIQL----NANEFLLELFHGPTLSFKD 113 RL+I Q EI + L+D++ RSY FR+ VTPL+Q N +LELFHGPT +FKD Sbjct: 66 MRLYIAQEEIPDADLKDLIKRSYSTFRSDEVTPLVQNVTGDKENLHILELFHGPTYAFKD 125 Query: 114 IAMQFIAELMDHILEE--------RDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFP 165 +A+QF+ L ++ L+ IT+VGATSGDTG+AAI GKK ++++IL+P Sbjct: 126 VALQFVGNLFEYFLQRTNANLPEGEKKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYP 185 Query: 166 EGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWA 225 GRIS +Q++QMTT N+ ++V +FD+CQ IVK +F D F N+ +NSINWA Sbjct: 186 TGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEFNSKHNVGAVNSINWA 245 Query: 226 RIMAQIVYYFVSSIAL--GSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEN 283 RI+AQ+ YYF S G ++ + F VP+GNFGDI AGY AK MGLPIEKL IATNEN Sbjct: 246 RILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEN 305 Query: 284 DTLVRMFDMGMY-RPEIVMETTSPAMDIQIPSNFERLLFEISG---------RNSLLVKE 333 D L R G+Y R + V T SPAMDI I SNFERLL+ ++ + +V Sbjct: 306 DILDRFLKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNN 365 Query: 334 AFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKS----NYLVDPHTAV 389 F L+ F++D ++ S F+++R S E+ + IK + E S +Y++DPHTAV Sbjct: 366 WFQELKTNGKFQVDKSIIEGASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPHTAV 425 Query: 390 GIHAA---LACRKSSSTPMVTLATAHPSKFPDTVKAASGIV-------PDCPISLEQMMR 439 G+ A +A S ++L+TAHP+KF D V A P L+++ Sbjct: 426 GVCATERLIAKDNDKSIQYISLSTAHPAKFADAVNNALSGFSNYSFEKDVLPEELKKLST 485 Query: 440 RPENCKVM-NKNIDEIKKFIKKRNMESKI 467 + K + +++ +K I++ + K+ Sbjct: 486 LKKKLKFIERADVELVKNAIEEELAKMKL 514 >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Length = 428 Score = 320 bits (820), Expect = 6e-88 Identities = 148/459 (32%), Positives = 226/459 (49%), Gaps = 36/459 (7%) Query: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60 MK + ++ + + F + GL + GL+ P +P S EI ++ L + + I Sbjct: 1 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILS 60 Query: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120 FIG EI L + V ++ P+ + ++ LELFHGPTL+FKD +F+A Sbjct: 61 AFIGDEIPQEILEERVRAAFAFPA-----PVANVESDVGCLELFHGPTLAFKDFGGRFMA 115 Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180 +++ HI D +TI+ ATSGDTGAA AF G + + IL+P G+IS +Q+K T Sbjct: 116 QMLTHI--AGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCT- 172 Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 NI +A+ FD CQ +VK F D ++ L+ NSIN +R++AQI YYF + Sbjct: 173 LGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISRLLAQICYYFEAVAQ 232 Query: 241 LGSPNRN-ISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299 L RN + SVP+GNFGD+ AG +AK +GLP+++ I ATN NDT+ R G + P+ Sbjct: 233 LPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVPRFLHDGQWSPKA 292 Query: 300 VMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFS 359 T S AMD+ P+N+ R+ + + L+ Y +D E Q+ Sbjct: 293 TQATLSNAMDVSQPNNWPRVEEL--------FRRKIWQLKELGYAAVDDETTQQT----- 339 Query: 360 AKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDT 419 L++ Y +PH AV A + L TAHP+KF ++ Sbjct: 340 -------------MRELKELGYTSEPHAAVAYRALRDQLN-PGEYGLFLGTAHPAKFKES 385 Query: 420 VKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFI 458 V+A G D P L + P + + ++K + Sbjct: 386 VEAILGETLDLPKELAERADLPLLSHNLPADFAALRKLM 424 >1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486 Score = 171 bits (433), Expect = 4e-43 Identities = 71/400 (17%), Positives = 141/400 (35%), Gaps = 67/400 (16%) Query: 89 TPLIQLN---------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGA 139 + L + ++ T SFKD+ M + ++ + + + + + A Sbjct: 131 SNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCA 190 Query: 140 TSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199 ++GDT AA+ A+ I + P +IS+ Q Q A+ V+++ + FD C K Sbjct: 191 STGDTS-AALSAYCASAGIPSIVFLPANKISMAQLVQP---IANGAFVLSIDTDFDGCMK 246 Query: 200 IVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGD 259 +++ + + NS+N R+ Q + VP GN G+ Sbjct: 247 LIR------EITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDW-VIVPGGNLGN 299 Query: 260 IFAGYMA------KMMGLPIEKLIIATNEN-DTLVRMFDMGMY--RPEIVMETTSPAMDI 310 I+A Y + I +++ A N + L + G +P T + A+ I Sbjct: 300 IYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQI 359 Query: 311 QIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNS 370 P + +R ++ + N ++ + + E + M+ Sbjct: 360 GDPVSIDRAVYALKKCNGIVEEAT------------EEELMDAMAQ-------------- 393 Query: 371 VIKSVLEKSNYLVDPHTAVGIHAALACRKSS----STPMVTLATAHPSKFPDTV-KAASG 425 + + + PHT V + A R + V ++TAH KF + S Sbjct: 394 -----ADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTAHGLKFTQSKIDYHSN 448 Query: 426 IVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMES 465 +PD + +D +K ++ + S Sbjct: 449 AIPDMACRFSNPPVDVKA--DFGAVMDVLKSYLGSNTLTS 486 >3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351 Score = 96.4 bits (239), Expect = 1e-20 Identities = 62/362 (17%), Positives = 120/362 (33%), Gaps = 63/362 (17%) Query: 89 TPLIQLNANEFLLEL---------FHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVG 138 TPLI L E + PT SFKD +++ + Sbjct: 29 TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKA------VEGGAQAVAC 82 Query: 139 ATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQ 198 A++G+T A+A A+A + I ++ P G + ++ S ++ V+ +FDD Sbjct: 83 ASTGNTAASAA-AYAARAGILAIVVLPAGYV---ALGKVAQSLVHGARIVQVEGNFDDAL 138 Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFG 258 ++ + L +NS+N R+ Q F + + ++P GN G Sbjct: 139 RLTQKLTEAFPVAL------VNSVNPHRLEGQKTLAF--EVVDELGDAPHYHALPVGNAG 190 Query: 259 DIFAGYMAKMMGLPIEKLIIATNENDTLVRMFD-MGMYRPEIVMETTSPAMDIQIPSNFE 317 +I A +M + K + + RP ET + A+ I P++++ Sbjct: 191 NITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQ 250 Query: 318 RLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLE 377 + + + E++ + + Sbjct: 251 GAVRAKEESG------------------------------GVIEAVTDEEILFAYRYLAR 280 Query: 378 KSNYLVDPHTAVGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPIS 433 + +P +A + + + +V T H K P T + + + P P Sbjct: 281 EEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAERVAELPPPVPAR 340 Query: 434 LE 435 LE Sbjct: 341 LE 342 >1v7c_A Threonine synthase; PLP-dependent enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics, lyase; HET: HEY; 2.00A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 1uin_A* 1uim_A* Length = 351 Score = 78.6 bits (192), Expect = 3e-15 Identities = 64/365 (17%), Positives = 109/365 (29%), Gaps = 61/365 (16%) Query: 89 TPLIQLNANEFLLEL---------FHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGA 139 TPLI L E + PT SFKD M + + + V Sbjct: 29 TPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLA------VSKAVEGGAQAVAC 82 Query: 140 TSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199 S AA+ A+A + I ++ P G + ++ S ++ V+ +FDD + Sbjct: 83 ASTGNTAASAAAYAARAGILAIVVLPAGYV---ALGKVAQSLVHGARIVQVEGNFDDALR 139 Query: 200 IVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGD 259 + + L +NS+N R+ Q F LG + V G+ Sbjct: 140 LTQKLTEAFPVAL------VNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNA--GN 191 Query: 260 IFAGYMAKMMGLPIEKLIIATNENDTLVRMFD-MGMYRPEIVMETTSPAMDIQIPSNFER 318 I A +M + K + + RP ET + A+ I P++++ Sbjct: 192 ITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQG 251 Query: 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK 378 K A R + Sbjct: 252 A-------------------VRAKEESGGVIEAVTDEEILFAYRYLAR-----------E 281 Query: 379 SNYLVDPHTAVGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPISL 434 +P +A + + + +V T H K P T + + + P P L Sbjct: 282 EGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATAERVAELPPPVPARL 341 Query: 435 EQMMR 439 E + Sbjct: 342 EAVAA 346 >2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360 Score = 77.3 bits (189), Expect = 6e-15 Identities = 58/364 (15%), Positives = 109/364 (29%), Gaps = 58/364 (15%) Query: 89 TPLIQLN--ANEFLLELF-----HGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGAT 140 TPLI + + + PT SFKD + + ++ A+ Sbjct: 39 TPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDA------LAHGQRAVLCAS 92 Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200 +G+T A+A A ++ + ++ + +I + +FDDC ++ Sbjct: 93 TGNTSASAAAYAARAGITCAVLIPQG----KIAMGKLAQAVMHGAKIIQIDGNFDDCLEL 148 Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDI 260 + + +D +NS+N RI Q F LG+ + V Sbjct: 149 ARKMAADFPTISL-----VNSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITA 203 Query: 261 FAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLL 320 + + L + + + + P ET + A+ I P+++ + Sbjct: 204 YWKGYTEYHQLGLIDKLPRMLGTQAA-GAAPLVLGEPVSHPETIATAIRIGSPASWTSAV 262 Query: 321 FEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSN 380 A + + D E L L V Sbjct: 263 E------------AQQQSKGRFLAASDEEILAAYHL------------------VARVEG 292 Query: 381 YLVDPHTAVGIHAALACRKSSSTP----MVTLATAHPSKFPDTVKAASGIVPDCPISLEQ 436 V+P +A I L +V T + K PDT V P+ Sbjct: 293 VFVEPASAASIAGLLKAIDDGWVARGSTVVCTVTGNGLKDPDTALKDMPSVSPVPVDPVA 352 Query: 437 MMRR 440 ++ + Sbjct: 353 VVEK 356 >2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352 Score = 65.3 bits (158), Expect = 3e-11 Identities = 63/366 (17%), Positives = 119/366 (32%), Gaps = 63/366 (17%) Query: 89 TPLIQLN---------ANEFL-LELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVG 138 TPLI+ + +L E + PT SFKD M ++ Sbjct: 31 TPLIEADNLARAIGFKGKIYLKYEGLN-PTGSFKDRGMTLAISKA-----VEAGKRAVIC 84 Query: 139 ATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQ 198 A++G+T A+A A+A + + Y+L P+G V +++ + V+A+Q +FDD Sbjct: 85 ASTGNTSASAA-AYAARAGLRAYVLLPKGA---VAIGKLSQAMIYGAKVLAIQGTFDDAL 140 Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTG-NF 257 IV+ + + +NS+N RI Q F LG V N Sbjct: 141 NIVRKIGENFPVEI------VNSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNI 194 Query: 258 GDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFE 317 + G+ K+ + + + P +T + A+ I P +++ Sbjct: 195 TAYWKGF--KIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIKIGNPYSWK 252 Query: 318 RLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLE 377 + E K+ S ++ K + Sbjct: 253 S------------------------ALKAAQESGGKI------DAVSDSEILYAYKLIAS 282 Query: 378 KSNYLVDPHTAVGIHAALACRKS----SSTPMVTLATAHPSKFPDTVKAASGIVPDCPIS 433 +P +A + + + + T + K PDT P Sbjct: 283 TEGVFCEPASAASVAGLIKLVREGFFKGGEVVTCTLTGNGLKDPDTAIKVCEEPITVPPD 342 Query: 434 LEQMMR 439 +++++ Sbjct: 343 FDEVVK 348 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 64.2 bits (156), Expect = 5e-11 Identities = 79/564 (14%), Positives = 145/564 (25%), Gaps = 248/564 (43%) Query: 49 LSYQEIALFIFRLFI--GQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHG 106 LS+ + L + +S+L++ N+ + EL Sbjct: 11 LSHGSLE---HVLLVPTASFFIASQLQEQFNKIL----PEPTEGFAADDEPTTPAELV-- 61 Query: 107 PTLSFKDIAMQFIAEL--------MDHILE------ERD-------HYITIVGATSGDTG 145 F + +++ L D +L E H + + Sbjct: 62 --GKF----LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH--ALAAKLLQEND 113 Query: 146 AAAIKAFAGKKRI--NMYILFPEGRISVVQQKQMTTSEAS---------NINVIAV---Q 191 +K K + N ++ ++ S N ++A+ Q Sbjct: 114 TTLVK----TKELIKNYI------TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163 Query: 192 SSFDDC-----------QKIVKNLFS--------------DVFFCHSVNLSGINSINW-- 224 + DD +V +L D + G+N + W Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT---QGLNILEWLE 220 Query: 225 -------------ARI------MAQIVYYFVSSIALG-SPNRNISFSVPTGNFGDIFAGY 264 I + Q+ +Y V++ LG +P G G Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP----------GELRSYLKGA 270 Query: 265 MAKMMGLPIEKLIIAT---------NENDTLVRMFDMGMYR-----------PEIVME-- 302 GL + + IA + + +F +G R P I+ + Sbjct: 271 TGHSQGL-VTAVAIAETDSWESFFVSVRKAITVLFFIG-VRCYEAYPNTSLPPSILEDSL 328 Query: 303 -----TTSPAMDIQ-----------------IPSNFERLLFEIS---GRNSLLVK---EA 334 SP + I +P+ +++ EIS G +L+V ++ Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG-KQV--EISLVNGAKNLVVSGPPQS 385 Query: 335 FYSLENKKYFRIDSEHLQKMSLS---------FSAKRAS-----------------MEDV 368 Y L L+K FS +R + Sbjct: 386 LYGLNL---------TLRKAKAPSGLDQSRIPFS-ERKLKFSNRFLPVASPFHSHLLVPA 435 Query: 369 NSVIKSVLEKSNYLVDP--------HTAVGIHAALACRKSSS------TPMVT------- 407 + +I L K+N + T G + L R S + Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDG--SDL--RVLSGSISERIVDCIIRLPVKWE 491 Query: 408 LATAHPSK----F-PDTVKAASGI 426 T + F P ASG+ Sbjct: 492 TTTQFKATHILDFGPG---GASGL 512 Score = 56.5 bits (136), Expect = 1e-08 Identities = 62/405 (15%), Positives = 102/405 (25%), Gaps = 171/405 (42%) Query: 86 AAVTPLIQLNANEFLLELFHG--------PTLSFKDIAMQFIAELMDHILEERDHYITIV 137 + PL L HG PT SF FIA + ++ + I+ Sbjct: 4 YSTRPLT----------LSHGSLEHVLLVPTASF------FIASQL------QEQFNKIL 41 Query: 138 GATS----GDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSS 193 + D GK ++ + V + + Sbjct: 42 PEPTEGFAADDEPTTPAELVGK-----FLGY------VSSLVEPSK-----------VGQ 79 Query: 194 FDDCQKIVKNLFSDVFFC----HSV--NLSGINSINWARIMAQIVYYFVSSIALGSPNRN 247 FD + F + + H++ L N + I Y + I P Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139 Query: 248 IS----F-SVPTGNFG--DIFAGYMAKMMGLPIEKLIIATNEN--DTLVRMFDMGMYRPE 298 S F +V GN IF G G ++ + L ++ Y Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGG-----QG---------NTDDYFEELRDLYQT--YHV- 182 Query: 299 IVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSF 358 LV + +E L L Sbjct: 183 -------------------------------LVGDLIKFS---------AETLS--ELIR 200 Query: 359 SAKRASMEDVNSVIKSVLEK--SNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKF 416 + A EK + L + I L +PS Sbjct: 201 TTLDA-------------EKVFTQGL-N------ILEWLE---------------NPSNT 225 Query: 417 PDTVKAASGIVP-DCP-ISLEQMMRRPENCKVMNKNIDEIKKFIK 459 PD S +P CP I + Q+ K++ E++ ++K Sbjct: 226 PDKDYLLS--IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLK 268 Score = 45.3 bits (107), Expect = 3e-05 Identities = 70/338 (20%), Positives = 128/338 (37%), Gaps = 109/338 (32%) Query: 63 IGQEI-KSSKL-RDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120 +G ++ K+SK +D+ NR+ + F++ ++ + N P ++ + F Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN--------PV----NLTIHFGG 1678 Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRIN----MYILFPE-GRISVVQ-- 173 E I R++Y ++ T D K F K IN Y E G +S Q Sbjct: 1679 EKGKRI---RENYSAMIFETIVDGKLKTEKIF---KEINEHSTSYTFRSEKGLLSATQFT 1732 Query: 174 QKQMTTSEASNINVIAVQSSFDDCQKIVKNLF-SDVFFC-HSV-------NLSGINSINW 224 Q +T E +++F+D + K L +D F HS+ +L+ + SI Sbjct: 1733 QPALTLME---------KAAFEDLKS--KGLIPADATFAGHSLGEYAALASLADVMSI-- 1779 Query: 225 ARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEND 284 + ++V+Y ++ + P + S N+G +IA N Sbjct: 1780 -ESLVEVVFYRGMTMQVAVPRDELGRS----NYG------------------MIAIN--- 1813 Query: 285 TLVRMFDMGMYRP-EIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKY 343 P + + A+ + ER + R LV+ Y++EN++Y Sbjct: 1814 ------------PGRVAASFSQEALQYVV----ER----VGKRTGWLVEIVNYNVENQQY 1853 Query: 344 -----FR-IDSE-------HLQKMSLSFSAKRASMEDV 368 R +D+ LQK+ + K S+E+V Sbjct: 1854 VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891 >1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372 Score = 49.1 bits (116), Expect = 2e-06 Identities = 41/318 (12%), Positives = 90/318 (28%), Gaps = 59/318 (18%) Query: 89 TPLI-------QLNANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGA 139 TP+ + +L ++ P+ SFK F + V + Sbjct: 47 TPIRDSMALSKMAGTSVYLKMDSAQ-PSGSFKIRGIGHFCKRW------AKQGCAHFVCS 99 Query: 140 TSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQ 198 ++G+ G AA A+A ++ + I+ P + + V D+ Sbjct: 100 SAGNAGMAA--AYAARQLGVPATIVVPGT----TPALTIERLKNEGATCKVVGELLDEAF 153 Query: 199 KIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNFG 258 ++ K L + + + L I+ SV G Sbjct: 154 ELAKALAKNNPGWVYIP----PFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLL 209 Query: 259 DIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSNFER 318 + + + + + T + G + + + TS A + + + Sbjct: 210 CGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAG--KLVSLPKITSVAKALGVKTVGS- 266 Query: 319 LLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEK 378 +L+ + I SE S ++ + I+ ++ Sbjct: 267 -----------------QALKLFQEHPIFSE------------VISDQEAVAAIEKFVDD 297 Query: 379 SNYLVDPHTAVGIHAALA 396 LV+P + A + Sbjct: 298 EKILVEPACGAALAAVYS 315 >1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal phosphate, isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514 Score = 42.4 bits (99), Expect = 2e-04 Identities = 36/241 (14%), Positives = 78/241 (32%), Gaps = 29/241 (12%) Query: 86 AAVTPLIQLNA------NEFLLEL-FHGPTLSFKD-IAMQFIAELMDHILEERDHYITIV 137 A VTPL ++ N L++ P SFK A +A L E ++ Sbjct: 29 AQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGL-----TEEQKAHGVI 83 Query: 138 GATSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDD 196 A++G+ AF+ + + I+ P ++ V+ ++FD+ Sbjct: 84 TASAGNHAQGV--AFSSARLGVKALIVMPTA----TADIKVDAVRGFGGEVLLHGANFDE 137 Query: 197 CQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGN 256 + L F + + ++A + + + + VP G Sbjct: 138 AKAKAIELSQQQGFTW------VPPFDHPMVIAGQGTLALELLQQDAHLDRV--FVPVGG 189 Query: 257 FGDIFA-GYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAMDIQIPSN 315 G + K + I+ + + ++ L D G + + + ++ + Sbjct: 190 GGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGD 249 Query: 316 F 316 Sbjct: 250 E 250 >1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix K1} SCOP: c.79.1.1 Length = 389 Score = 42.1 bits (98), Expect = 3e-04 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 14/159 (8%) Query: 83 FRNAAVTPLIQLNANEFL-------LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYI 134 F TPL++ LE ++ +LS KD A++ I+ L + + Sbjct: 91 FERGKPTPLVRSRLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGS---- 146 Query: 135 TIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSF 194 + ATS + G A + + ++ G + A I S+ Sbjct: 147 LVADATSSNFGVAL--SAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204 Query: 195 DDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVY 233 +++K+ ++ F + + N R A+ ++ Sbjct: 205 HLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIF 243 >3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive protein, jasmonic acid pathway; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366 Score = 40.9 bits (95), Expect = 6e-04 Identities = 39/339 (11%), Positives = 88/339 (25%), Gaps = 65/339 (19%) Query: 72 LRDIVN-RSYHCFRNAAVTPLIQLN-------ANEFLLELFHGPTLSFKD-IAMQFIAEL 122 L DI+ Y +PL N ++ SFK A ++ L Sbjct: 46 LVDILASPVYDVAIE---SPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNL 102 Query: 123 MDHILEERDHYITIVGATSGDTGAAAIKAFAGKKR-INMYILFPEGRISVVQQKQMTTSE 181 L++ ++ A++G+ A AG++ I+ P + Sbjct: 103 SREELDK-----GVITASAGNHAQGV--ALAGQRLNCVAKIVMPTTTPQIKIDAVRALGG 155 Query: 182 ASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIAL 241 + + ++ + + + + Sbjct: 156 DVVLYGKTFDEAQTHALELSEKDGLKYIPPFDDPGVIKGQGTIGTEINRQL--------- 206 Query: 242 GSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNEN-DTLVRMFDMGMYRPEIV 300 + +P G G I P K+I ++ G Sbjct: 207 ---KDIHAVFIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSN 263 Query: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360 ++T + + + + + + +LV Sbjct: 264 VDTFADGVAVALVGEYTFAKCQELIDGMVLVAN--------------------------- 296 Query: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRK 399 + +++ IK V ++ +++ AV I A A + Sbjct: 297 -----DGISAAIKDVYDEGRNILETSGAVAIAGAAAYCE 330 >1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435 Score = 40.1 bits (93), Expect = 0.001 Identities = 37/228 (16%), Positives = 69/228 (30%), Gaps = 31/228 (13%) Query: 89 TPLIQLN---------ANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYITIV 137 TP++++N E F+ S KD I+++ I + + TI+ Sbjct: 109 TPMVRINKIGKKFGLKCELLAKCEFFN-AGGSVKDRISLRMIEDAERDGTLKPGD--TII 165 Query: 138 GATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEA------SNINVIAVQ 191 TSG+TG A A R I+ ++S + + A +N + + Sbjct: 166 EPTSGNTGIGL--ALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPE 223 Query: 192 SSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFS 251 S ++ + + N S N + A + G + + Sbjct: 224 SHVGVAWRLKNEIPNSHILDQYRNAS--NPLAHYDTTADEILQQCD----GKLDMLV--- 274 Query: 252 VPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEI 299 G G I P ++I E L ++ Sbjct: 275 ASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT 322 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 35.6 bits (81), Expect = 0.028 Identities = 72/346 (20%), Positives = 128/346 (36%), Gaps = 100/346 (28%) Query: 107 PTLSFKDIAMQFIAELMDHILEERDHYI-----------------TIVGATSGDTGAAAI 149 P ++ + +QF+ EL + + R + +V S D A + Sbjct: 722 PVMADLNGGLQFVPELKEFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQV 781 Query: 150 KAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKIVKNLFSDVF 209 + + R N+ + FPE + Q KQ+ +E ++ D + IV F++V Sbjct: 782 EI---QPRANIQLDFPELK-PYKQVKQIAPAE--------LEGLLDLERVIVVTGFAEVG 829 Query: 210 FCHSV------------NLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNF 257 S +L G + W IM I Y+ N N+ Sbjct: 830 PWGSARTRWEMEAFGEFSLEGCVEMAW--IMGFISYH----------NGNLK-------- 869 Query: 258 GDIFAGYMAKMMGLPI-EKLIIATNENDTL----VRMFDMGM---YRPE--------IVM 301 G + G++ P+ +K + A E L +R+ + + Y PE IV Sbjct: 870 GRPYTGWVDSKTKEPVDDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVE 929 Query: 302 ETTSP-AMDIQIPSNFERL------LFEI--SGRNSL-LVKEAFYSLENKKYFRIDSEHL 351 E P + F+ +FEI +G S+ L+K A +L K R D Sbjct: 930 EDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKLLKGA--TLYIPKALRFDRLVA 987 Query: 352 QKMSLSFSAKRASM-EDVNS--------VIKSVLEK--SNYLVDPH 386 ++ ++AK + +D+ S V+ SV+E ++ + DP+ Sbjct: 988 GQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFIASGITDPY 1033 Score = 29.4 bits (65), Expect = 1.6 Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 22/89 (24%) Query: 130 RDHYITIVGATSGDTGAAAIKAF--AGKKRINMYILFPEGRISVVQQKQMTT-------- 179 +D Y+ I GA G GA ++ G K ++ R S KQ+T Sbjct: 475 KDKYVLITGAGKGSIGAEVLQGLLQGGAK-----VVVTTSRFS----KQVTDYYQSIYAK 525 Query: 180 --SEASNINVIAV-QSSFDDCQKIVKNLF 205 ++ S + V+ Q S D + +++ ++ Sbjct: 526 YGAKGSTLIVVPFNQGSKQDVEALIEFIY 554 >1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D Length = 1265 Score = 35.4 bits (81), Expect = 0.031 Identities = 55/434 (12%), Positives = 121/434 (27%), Gaps = 44/434 (10%) Query: 64 GQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIAELM 123 G+ + + + + V LIQ++ + L +F + M+ A L+ Sbjct: 618 GRILFARIVGEAVGDEKVAQE------LIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLL 671 Query: 124 DHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEAS 183 D + T G + G K+R +I + T Sbjct: 672 DALKYYGFTLSTTSGIIT--IGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRER 729 Query: 184 NINVIAVQSSFDDC--QKIVKNLFSDVFFCHSVNLSGINS-INWARIMAQIVYYFVSSIA 240 VI + + + Q + N + F ++ + N +I + Sbjct: 730 YDQVIQLWTETTEKVTQAVFNNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKP 789 Query: 241 LGSPNRNIS--------------FSVPTGNFGDI-------FAGYMAKMMGLPIEKLIIA 279 G S G +GY+ + + ++++ Sbjct: 790 SGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVAHEIVVR 849 Query: 280 TNENDTL----VRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAF 335 + T V +F M + + S R + + GR + Sbjct: 850 EADCGTTKYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAREVEAL-GRRLEEGRYLS 908 Query: 336 YSLENKKYFRIDSEHLQKMSLSFSAKRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAAL 395 + ++ ++++ + + V V AVG+ AA Sbjct: 909 LEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGVVAAE 968 Query: 396 ACRKSSSTPMVTLATAHPSKFPDTVKAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIK 455 + T + T+ T H G+ + RRP+ V+++ ++ Sbjct: 969 SI-GEPGTQL-TMRTFHTGGVAVGTDITQGLPRVIELF---EARRPKAKAVISEIDGVVR 1023 Query: 456 KFIKKRNMESKIEP 469 I++ + Sbjct: 1024 --IEEGEDRLSVFV 1035 >1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon lyase, open twisted alpha/beta; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A* Length = 341 Score = 35.1 bits (80), Expect = 0.035 Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 17/125 (13%) Query: 89 TPLIQLN---------ANEFLLELFHGPTLSFKDIAMQFIAELMDHILEERDHYITIVGA 139 +P+ LN N + L+F ++ + ++ I+E ++ +G Sbjct: 16 SPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGDYTHLVSIGG 75 Query: 140 TSGDTGAAAIKAFAGKKRINMYILFPEG-------RISVVQQKQMTTSEASNINVIAVQS 192 + A K ++ + + + + S +V ++ Sbjct: 76 RQSNQTRMVAAL-AAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIED 134 Query: 193 SFDDC 197 FD Sbjct: 135 GFDIG 139 >1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A* Length = 322 Score = 33.3 bits (75), Expect = 0.11 Identities = 26/161 (16%), Positives = 48/161 (29%), Gaps = 13/161 (8%) Query: 89 TPLIQLNA------NEFLLEL-FHGPTLSFKD-IAMQFIAELMDHILEERDHYITIVGAT 140 TPL+ LN +L P S KD I I++ L + ++ T Sbjct: 16 TPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGES-VLIEPT 74 Query: 141 SGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQKI 200 SG+TG F + I+ +S ++ + + + K Sbjct: 75 SGNTGVGLA--FTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKA 132 Query: 201 VKNLFS--DVFFCHSVNLSGINSINWARIMAQIVYYFVSSI 239 + L + + I++ +I I Sbjct: 133 EEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKI 173 >3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis} Length = 590 Score = 30.5 bits (68), Expect = 0.87 Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 1/69 (1%) Query: 110 SFKDIAMQFIAELMDHILEERDHYITI-VGATSGDTGAAAIKAFAGKKRINMYILFPEGR 168 SF + + + EL + EE + + VG A N + GR Sbjct: 61 SFVEASRTALRELAARLAEEGFGELPVLVGYLDRSESAQPKYGQPAGAPRNAAAVLHRGR 120 Query: 169 ISVVQQKQM 177 +++ K Sbjct: 121 VALTFAKHH 129 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 30.4 bits (67), Expect = 1.0 Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 22/43 (51%) Query: 332 KEAFYSLENKKYFRIDSEHLQKMSLSF----SAK----RASME 366 K+A KK LQ SL SA +A+ME Sbjct: 19 KQAL-----KK--------LQA-SLKLYADDSAPALAIKATME 47 Score = 27.7 bits (60), Expect = 5.3 Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 13/39 (33%) Query: 373 KSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTL-AT 410 K L+K + A+L S P + + AT Sbjct: 19 KQALKK------------LQASLKLYADDSAPALAIKAT 45 >1mk3_A BCL-W, apoptosis regulator BCL-W; BCL-W protein, apoptotis; NMR {Homo sapiens} SCOP: f.1.4.1 PDB: 1zy3_A 1o0l_A Length = 178 Score = 29.5 bits (66), Expect = 1.6 Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 21/118 (17%) Query: 188 IAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRN 247 + S+ ++ LF NW R++A + F +++ S N+ Sbjct: 69 VTPGSAQQRFTQVSDELFQG-------------GPNWGRLVA--FFVFGAALCAESVNKE 113 Query: 248 ISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTS 305 + G + +M + + I ++ ++ G + + Sbjct: 114 ME-----VLVGQV-QEWMVAYLETRLADWIHSSGGWAEFTALYGDGALEEARRLREGN 165 >1r2d_A Apoptosis regulator BCL-X; monomeric, alpha-helical; 1.95A {Homo sapiens} SCOP: f.1.4.1 PDB: 2b48_A 1r2i_A 1r2h_A 1r2g_A 1r2e_A 1bxl_A 1lxl_A 1maz_A 3cva_X 1ysg_A* 1ysi_A* 1ysn_A* 2o1y_A* 2yxj_A* 1g5j_A Length = 218 Score = 29.2 bits (65), Expect = 2.0 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 21/104 (20%) Query: 188 IAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRN 247 I +++ +++V LF D +NW RI+A + F ++ + S ++ Sbjct: 114 ITPGTAYQSFEQVVNELFRD-------------GVNWGRIVA--FFSFGGALCVESVDKE 158 Query: 248 ISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFD 291 + A +MA + +E I DT V ++ Sbjct: 159 MQ------VLVSRIAAWMATYLNDHLEPWIQENGGWDTFVELYG 196 >3fdl_A Apoptosis regulator BCL-X; helical bundle, peptide-protein complex, apoptosis, alternative splicing, membrane, mitochondrion, nucleus, transmembrane; 1.78A {Homo sapiens} PDB: 3fdm_A 3inq_A* 3io8_A 2o2m_A* 2o2n_A* Length = 158 Score = 28.7 bits (64), Expect = 2.8 Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 21/104 (20%) Query: 191 QSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISF 250 +++ +++V LF D +NW RI+A + F ++ + S ++ + Sbjct: 66 GTAYQSFEQVVNELFRD-------------GVNWGRIVA--FFSFGGALCVESVDKEMQV 110 Query: 251 SVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGM 294 V A +MA + +E I DT V ++ Sbjct: 111 LV------SRIAAWMATYLNDHLEPWIQENGGWDTFVELYGNNA 148 >2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica hm-1} PDB: 3bm5_A* Length = 343 Score = 28.7 bits (63), Expect = 3.0 Identities = 31/233 (13%), Positives = 64/233 (27%), Gaps = 24/233 (10%) Query: 89 TPLIQLN-----------ANEFL-LELFHGPTLSFKD-IAMQFIAELMDHILEERDHYIT 135 TPL++L+ + LE F+ P S KD + + + + + Sbjct: 24 TPLVELHGVTEHPRIKKGTRILVKLEYFN-PMSSVKDRVGFNIVYQAIKD--GRLKPGME 80 Query: 136 IVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFD 195 I+ +TSG+TG A +A A + + + +E Sbjct: 81 IIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAI 140 Query: 196 DCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTG 255 + + +F + + N+ +I G Sbjct: 141 EEVNKMIKENPGKYFVANQFGNPDNTAAHHYTANEIWEDT--------DGEVDIVVSAVG 192 Query: 256 NFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIVMETTSPAM 308 G + K+I E ++ G + + + P + Sbjct: 193 TSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLEGKAKGPHGIQGIGAGFIPDI 245 >3bzm_A Menaquinone-specific isochorismate synthase; isomerase, menaquinone biosynthesis; HET: CIT; 1.95A {Escherichia coli} SCOP: d.161.1.1 PDB: 2eua_A* 3bzn_A Length = 431 Score = 28.4 bits (63), Expect = 4.0 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 91 LIQLNANEFLLELFHGPTLSF--KDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAA 148 L + + L +L ++ +D+A QFIA R+ Y G S Sbjct: 327 LNKADDVICLHQLQPTAAVAGLPRDLARQFIARHEPF---TREWYAGSAGYLSLQQSEFC 383 Query: 149 I 149 + Sbjct: 384 V 384 >3gfh_A Ethanolamine utilization protein EUTL; bacterial mircocompartment, shell protein, structural protein; 2.20A {Escherichia coli} PDB: 3i87_A 3i82_A Length = 225 Score = 28.3 bits (63), Expect = 4.1 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 9/110 (8%) Query: 119 IAELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMT 178 A + L + ++ A S D A A K+ + +++ + Sbjct: 24 FARELK--LPPHIRSLGLISADSDDVTYIA--ADEATKQAMVEVVYGRSLYAGAAHGPSP 79 Query: 179 TSEASNI-----NVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSIN 223 T+ I N V++ D ++N + + + + + + + Sbjct: 80 TAGEVLIMLGGPNPAEVRAGLDAMIAHIENGAAFQWANDAQDTAFLAHVV 129 >3gse_A Menaquinone-specific isochorismate synthase; MENF,yersinia pestis CO92, YPO2528, csgid, isomerase; 2.28A {Yersinia pestis} Length = 458 Score = 27.8 bits (61), Expect = 4.9 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 91 LIQLNANEFLLELFHGPTLSF--KDIAMQFIAELMDHILEERDHYITIVGATSGDTGAAA 148 L + + + L L ++ ++ A QFIA+ R Y G S + Sbjct: 348 LSRASDTDCLQRLQPTAAVAGLPREAARQFIAKHELF---SRGWYAGSAGYLSLKRTEFS 404 Query: 149 I 149 + Sbjct: 405 V 405 >2nrq_A Hypothetical protein ORF-C20_032; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; HET: MSE; 2.60A {Sulfolobus solfataricus} SCOP: d.77.1.2 Length = 159 Score = 27.8 bits (62), Expect = 6.0 Identities = 9/20 (45%), Positives = 12/20 (60%) Query: 449 KNIDEIKKFIKKRNMESKIE 468 +EIKK + R M SK+E Sbjct: 133 NIKEEIKKLVNSRIMHSKLE 152 >2ewf_A Nicking endonuclease N.BSPD6I; helix-turn-helix, beta-alpha-barrel, hydrolase; 1.84A {Bacillus SP} Length = 610 Score = 27.7 bits (61), Expect = 6.1 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Query: 41 KEIKDLRGLSYQEIALFIFRLFIGQEIKSSKLRDIVNRSYHCFRNA 86 +K + GLS +IA+F ++++ +I FRN Sbjct: 149 SLLKKVGGLSKLDIAMFCLTA-----TNNNQVDEIAEEIMQ-FRNE 188 >3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis} Length = 283 Score = 27.5 bits (60), Expect = 6.1 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%) Query: 437 MMRRP---ENCKVMNKNIDEIKKFIKK 460 + R+P N K MN N E ++K Sbjct: 23 VSRKPLIAGNWK-MNLNHYEAIALVQK 48 >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192 Score = 27.3 bits (59), Expect = 7.0 Identities = 14/78 (17%), Positives = 28/78 (35%) Query: 287 VRMFDMGMYRPEIVMETTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRI 346 + + +G + S + F+ E S VKE F + + R Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR 174 Query: 347 DSEHLQKMSLSFSAKRAS 364 DS+ + L++ ++ S Sbjct: 175 DSKEKNERRLAYQKRKES 192 >3gg7_A Uncharacterized metalloprotein; structural genomics, unknown function, plasmid, PSI-2, protein structure initiative; 1.50A {Deinococcus radiodurans} Length = 254 Score = 26.9 bits (58), Expect = 9.6 Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 5/44 (11%) Query: 23 LATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFI----FRLF 62 L DG +P + + E + + + E+ + RL Sbjct: 200 LELDGQAALPWDVKSVVEG-LSKIWQIPASEVERIVKENVSRLL 242 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.321 0.135 0.385 Gapped Lambda K H 0.267 0.0696 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,950,752 Number of extensions: 187291 Number of successful extensions: 847 Number of sequences better than 10.0: 1 Number of HSP's gapped: 819 Number of HSP's successfully gapped: 54 Length of query: 469 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 373 Effective length of database: 3,365,806 Effective search space: 1255445638 Effective search space used: 1255445638 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 58 (26.2 bits)