BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62] (469 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 469 Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 469/469 (100%), Positives = 469/469 (100%) Query: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR Sbjct: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60 Query: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA Sbjct: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120 Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS Sbjct: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180 Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA Sbjct: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240 Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV Sbjct: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300 Query: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA Sbjct: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360 Query: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV 420 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV Sbjct: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV 420 Query: 421 KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP 469 KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP Sbjct: 421 KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP 469 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 27.3 bits (59), Expect = 0.56, Method: Compositional matrix adjust. Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 25/197 (12%) Query: 199 KIVKNLFSDVFFCHSVNLSG-INSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNF 257 +++KN+F F + ++G I + IM Y F +S + P +S+PTG Sbjct: 111 EMLKNVF---FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS 167 Query: 258 GDIFAGYMAKMMG-LP-----IEKLIIATNENDTLVRMFDMGMYRPEIV--METTSPAMD 309 D+F + + + LP IEK ++ ++ F++ ++ P E TSPA Sbjct: 168 VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI-IHNPRKAKDFEWTSPAR- 225 Query: 310 IQIPSNFERLLFE--ISGRNSLLVKEAFYSLENKKYFRIDSEHLQKM--SLSFSAKRASM 365 ERL ++ ++G+ +LL+ + E ++ + QK+ ++ FS ++ Sbjct: 226 -------ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278 Query: 366 EDVNSVIKSVLEKSNYL 382 + +++ + +K+ L Sbjct: 279 SAIKDILQDMSQKNRML 295 >gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust. Identities = 8/23 (34%), Positives = 13/23 (56%) Query: 247 NISFSVPTGNFGDIFAGYMAKMM 269 + F +P G GD + Y+ +MM Sbjct: 242 ELDFDIPIGKHGDCYDRYLVRMM 264 >gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str. psy62] Length = 421 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%) Query: 168 RISVVQQKQMTTS----EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGIN--- 220 +S+ +Q Q T + + +N + V SFD + N S + N SGI+ Sbjct: 221 EVSIFRQDQSTNNSFPYNVAPLNTVEV--SFDPVTGYLANS-SHKAISFNDNTSGIDQQI 277 Query: 221 SINWARIMAQIVYYFV---SSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277 +I+ ++ Q+ F+ S I +P + FSV + DI + +PI +L Sbjct: 278 TIDISK-TTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTR---VPIYRLA 333 Query: 278 IATNENDTLVRMFDMGMYRP 297 IAT ++ +++FD Y P Sbjct: 334 IATVPSEDNLKLFDGNTYLP 353 >gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus Liberibacter asiaticus str. psy62] Length = 737 Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust. Identities = 13/54 (24%), Positives = 25/54 (46%) Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254 V + D+F + ++ +NS+ + I + +S + G + SF VPT Sbjct: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPT 162 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust. Identities = 10/25 (40%), Positives = 18/25 (72%) Query: 149 IKAFAGKKRINMYILFPEGRISVVQ 173 ++A + K+R+ M ++F E ISV+Q Sbjct: 201 LEAVSVKERLEMLLVFMESEISVLQ 225 >gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 23.1 bits (48), Expect = 9.0, Method: Compositional matrix adjust. Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%) Query: 288 RMFDMGMYRPEIVMETTSPAMDIQIPSNFER-LLFEISGRNSLLVKEAFYSLENKKYFR 345 ++ + G+ R +I +ET S +D + F ++ + G+N +LV A++ ++ YF+ Sbjct: 137 KLLESGVERDDIKLETQS--LDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193 >gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Length = 781 Score = 23.1 bits (48), Expect = 9.2, Method: Compositional matrix adjust. Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 7/57 (12%) Query: 143 DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199 D G AA+K ++ +LF + + V Q+ E + I++QS+ + QK Sbjct: 250 DRGYAAVK-------VSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQK 299 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.135 0.385 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 285,381 Number of Sequences: 1233 Number of extensions: 11590 Number of successful extensions: 31 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 26 Number of HSP's gapped (non-prelim): 11 length of query: 469 length of database: 328,796 effective HSP length: 77 effective length of query: 392 effective length of database: 233,855 effective search space: 91671160 effective search space used: 91671160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)