BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus
Liberibacter asiaticus str. psy62]
(469 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780465|ref|YP_003064878.1| threonine synthase [Candidatus Liberibacter asiaticus str. psy62]
Length = 469
Score = 971 bits (2509), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/469 (100%), Positives = 469/469 (100%)
Query: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR
Sbjct: 1 MKYISTRNVDLSLGFCDTILSGLATDGGLYIPKYIPRLSEKEIKDLRGLSYQEIALFIFR 60
Query: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA
Sbjct: 61 LFIGQEIKSSKLRDIVNRSYHCFRNAAVTPLIQLNANEFLLELFHGPTLSFKDIAMQFIA 120
Query: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS
Sbjct: 121 ELMDHILEERDHYITIVGATSGDTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTS 180
Query: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA
Sbjct: 181 EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIA 240
Query: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300
LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV
Sbjct: 241 LGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLIIATNENDTLVRMFDMGMYRPEIV 300
Query: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360
METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA
Sbjct: 301 METTSPAMDIQIPSNFERLLFEISGRNSLLVKEAFYSLENKKYFRIDSEHLQKMSLSFSA 360
Query: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV 420
KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV
Sbjct: 361 KRASMEDVNSVIKSVLEKSNYLVDPHTAVGIHAALACRKSSSTPMVTLATAHPSKFPDTV 420
Query: 421 KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP 469
KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP
Sbjct: 421 KAASGIVPDCPISLEQMMRRPENCKVMNKNIDEIKKFIKKRNMESKIEP 469
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 27.3 bits (59), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 90/197 (45%), Gaps = 25/197 (12%)
Query: 199 KIVKNLFSDVFFCHSVNLSG-INSINWARIMAQIVYYFVSSIALGSPNRNISFSVPTGNF 257
+++KN+F F + ++G I + IM Y F +S + P +S+PTG
Sbjct: 111 EMLKNVF---FEGRKITVTGKIKKLKNRIIMVHPHYIFHNSQDVNFPLIEAVYSLPTGLS 167
Query: 258 GDIFAGYMAKMMG-LP-----IEKLIIATNENDTLVRMFDMGMYRPEIV--METTSPAMD 309
D+F + + + LP IEK ++ ++ F++ ++ P E TSPA
Sbjct: 168 VDLFKKIIVEALSRLPVLPEWIEKDLLQKKSFPSIAEAFNI-IHNPRKAKDFEWTSPAR- 225
Query: 310 IQIPSNFERLLFE--ISGRNSLLVKEAFYSLENKKYFRIDSEHLQKM--SLSFSAKRASM 365
ERL ++ ++G+ +LL+ + E ++ + QK+ ++ FS ++
Sbjct: 226 -------ERLAYDELLAGQIALLLMRKQFKKEIGIPINVEGKIAQKILRNIPFSPTKSQE 278
Query: 366 EDVNSVIKSVLEKSNYL 382
+ +++ + +K+ L
Sbjct: 279 SAIKDILQDMSQKNRML 295
>gi|254780855|ref|YP_003065268.1| NADH dehydrogenase subunit D [Candidatus Liberibacter asiaticus
str. psy62]
Length = 396
Score = 26.2 bits (56), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 247 NISFSVPTGNFGDIFAGYMAKMM 269
+ F +P G GD + Y+ +MM
Sbjct: 242 ELDFDIPIGKHGDCYDRYLVRMM 264
>gi|254780525|ref|YP_003064938.1| flagellar hook protein FlgE [Candidatus Liberibacter asiaticus str.
psy62]
Length = 421
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 17/140 (12%)
Query: 168 RISVVQQKQMTTS----EASNINVIAVQSSFDDCQKIVKNLFSDVFFCHSVNLSGIN--- 220
+S+ +Q Q T + + +N + V SFD + N S + N SGI+
Sbjct: 221 EVSIFRQDQSTNNSFPYNVAPLNTVEV--SFDPVTGYLANS-SHKAISFNDNTSGIDQQI 277
Query: 221 SINWARIMAQIVYYFV---SSIALGSPNRNISFSVPTGNFGDIFAGYMAKMMGLPIEKLI 277
+I+ ++ Q+ F+ S I +P + FSV + DI + +PI +L
Sbjct: 278 TIDISK-TTQLAGGFIPQKSEINGHAPGKPKDFSVSKDGYVDIIYDDGTR---VPIYRLA 333
Query: 278 IATNENDTLVRMFDMGMYRP 297
IAT ++ +++FD Y P
Sbjct: 334 IATVPSEDNLKLFDGNTYLP 353
>gi|254780970|ref|YP_003065383.1| phosphoribosylformylglycinamidine synthase II [Candidatus
Liberibacter asiaticus str. psy62]
Length = 737
Score = 25.4 bits (54), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%)
Query: 201 VKNLFSDVFFCHSVNLSGINSINWARIMAQIVYYFVSSIALGSPNRNISFSVPT 254
V + D+F + ++ +NS+ + I + +S + G + SF VPT
Sbjct: 109 VGGILRDIFTMGARPVAAMNSLRFGAIHHPKTKHLLSGVVAGIAGYSNSFGVPT 162
>gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str.
psy62]
Length = 820
Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 149 IKAFAGKKRINMYILFPEGRISVVQ 173
++A + K+R+ M ++F E ISV+Q
Sbjct: 201 LEAVSVKERLEMLLVFMESEISVLQ 225
>gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 242
Score = 23.1 bits (48), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 288 RMFDMGMYRPEIVMETTSPAMDIQIPSNFER-LLFEISGRNSLLVKEAFYSLENKKYFR 345
++ + G+ R +I +ET S +D + F ++ + G+N +LV A++ ++ YF+
Sbjct: 137 KLLESGVERDDIKLETQS--LDTFQNAQFSSSMIKNMQGKNIILVSSAYHLKRSQLYFQ 193
>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
psy62]
Length = 781
Score = 23.1 bits (48), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 143 DTGAAAIKAFAGKKRINMYILFPEGRISVVQQKQMTTSEASNINVIAVQSSFDDCQK 199
D G AA+K ++ +LF + + V Q+ E + I++QS+ + QK
Sbjct: 250 DRGYAAVK-------VSSQVLFDKQKSGYVLIFQIDEGEIYTVGNISIQSTLQEIQK 299
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.135 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,381
Number of Sequences: 1233
Number of extensions: 11590
Number of successful extensions: 31
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 11
length of query: 469
length of database: 328,796
effective HSP length: 77
effective length of query: 392
effective length of database: 233,855
effective search space: 91671160
effective search space used: 91671160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)